Citrus Sinensis ID: 004835

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------73
Protein Sequence
MMVPKTLMQCKFDSELALTTRLPDLNSHLRVDPTYCLDDMKQNNASAAKTVVVNYANKGTNAETSEYDTIVEGEEKEQFTDLGTTKRIENLVLPLDTTLIDKPSLDNEHEIDVDIRAVSPAAELPVTNRQLRKPSAKTKFLHKDGIDPKGPKLQASRHNKAFDAKEKKQGKRDQISRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTTGNPSHKQCSARPLKISQ
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHcccccccccccccccccccccccEEEEEEEEEEcccEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHccccccEEEEEEEEEEccEEEEEEEccccccHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEcccccccccccHccccccccccccHHHccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccHHHEEEEEEEEEcccEEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEEEEEcccEEEEEEEccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHccEEcccccHHHEEEEccccEEEEccHHHcHHcccccccccEEEccEcccHHHHccccccccccEEHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHcccccHHccHHHHHHHHHccccccccccHHHHHHccccccccccccHHHccccccccccccHHHHHHHHHHccccEcccccccccccccHHHHHHHHHHHHHHccccccccEEEcccccccHHHccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHccccccccccHHHHHccHHHHHcccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mmvpktlmqckfdselalttrlpdlnshlrvdptyclddmkqnnaSAAKTVVVNYAnkgtnaetseydtivegeekeqftdlgttkrienlvlpldttlidkpsldneheidvdiravspaaelpvtnrqlrkpsaktkflhkdgidpkgpklqasrhnkafdakekkqgkrDQISRIMALKatgnhnddqtnakvlpnfesfiveeeegsggygtvyrarrkndgtvvaikcphanaskhYVSNELRMLERFGGKNFIIKYEgcfkcgdsdcfvlehvkhdrpevlkkeidlsQLQWYGYCLFRALASLHKqgivhrdvkpgnflFSCKAVKGYLIDFNLamvgfdgsfnqatlpgtkyvppvngrkvpsakSLVAVKqdtrkgsnlepkdlkRKVVRQTNvhndlgsrniinsqgadgsgitsakeatstrtpaerlreplpcqgRKELISLLQKALrnpnyeasdcpaprrkrvvappgkvgkelvyitpmplhsngiavagaglmnkgpsdlsDLQILLltklhpvpVLIIFYLLLgngkqkkdgpcagtkgfrapevlfrsqhqgpkldiWSAGVTLLYLMIgrtpffgdpeqNIKDIAKLRGSEDLWEVAKlhnressfpedlyaakslppinlpewcklitkrpdflevipsslFDLVdkcltvnprlriSAEDalkheffaPCHEMLRKQKLLrqgssidnttgnpshkqcsarplkisq
Flexible Loop (DISEMBL)
MMVPKTLMQCKFDSELalttrlpdlnsHLRVDPTYCLDDMKQNNASAAKTVVVNYANkgtnaetseydtivegeekeqftdlgttkrienlvlpldttlidkpsldNEHEIDVDIRavspaaelpvtnrqlrkpsaktkflhkdgidpkgpklqasrhnkafdakekkqgkrdQISRIMALKatgnhnddqtnaKVLPNFESFIVEeeegsggygTVYRARRKNDGTVVAIKcphanaskhyvSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSlvavkqdtrkgsnlepkdlkrkvvrqtnvhndlgsrniinsqgadgsgitsakeatstrtpaerlreplpcqgRKELISLLQKALRNPnyeasdcpaprrkrvvappgkvGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFrsqhqgpklDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSidnttgnpshkqcsarplkisq
Low Complexity Region (SEG)
MMVPKTLMQCKFDSELALTTRLPDLNSHLRVDPTYCLDDMKQNNASAAKTVVVNYANKGTNAETSEYDTIVEGEEKEQFTDLGTTKRIENLVLPLDTTLIDKPSLDNEHEIDVDIRAVSPAAELPVTNRQLRKPSAKTKFLHKDGIDPKGPKLQASRHNKAFDAKEKKQGKRDQISRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCpaprrkrvvappgkvGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTTGNPSHKQCSARPLKISQ
Disordered region (IsUnstruct)
********QCKFDSELALTTRLPDLNSHLRVDPTYCLDDMKQNNASAAKTVVVNYANKG*******YDTIV*******FTDLGTTKRIENLVLPLDTTLIDKP*******IDVDI****************************************************************************************************TVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVP************************************************************************************************************************KVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLR********************************
Disordered Region (DISOPRED)
*********C****ELA**********************************************************************************************************************************************************************************VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRK************************************************************************************SLLQKALRNPNYEASDCPAPRRKRVVAPP**VGKELVYITPMPLHSNGIAVAG*************LQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCH************************************
Disordered Region (DISEMBL)
MMVPKTLMQCKFDSELALTTRLPDLNSHLRVDPTYCLDDMKQNNASAAKTVVVNYANKGTNAETSEYDTIVEGEEKEQFTDLGTTKRIENLVLPLDTTLIDKPSLDNEHEIDVDIRAVSPAAELPVTNRQLRKPSAKTKFLHKDGIDPKGPKL********************QISRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGA********************LREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSID********************
Disordered Region (DISPRO)
*MVPKTLMQCKFDSELALTTRLPDLNSHLRVDPTYCL*******************************************************************************************************************************************RIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEM*********GSSIDN*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMVPKTLMQCKFDSELALTTRLPDLNSHLRVDPTYCLDDMKQNNASAAKTVVVNYANKGTNAETSEYDTIVEGEEKEQFTDLGTTKRIENLVLPLDTTLIDKPSLDNEHEIDVDIRAVSPAAELPVTNRQLRKPSAKTKFLHKDGIDPKGPKLQASRHNKAFDAKEKKQGKRDQISRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTTGNPSHKQCSARPLKISQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	728	2.2.26 [Sep-21-2011]
Q54DK3	1061	Probable serine/threonine	yes	no	0.197	0.135	0.346	1e-17
Q9UQY9	429	Cell cycle protein kinase	yes	no	0.199	0.337	0.361	9e-16
P50582	507	Cell cycle serine/threoni	no	no	0.225	0.323	0.337	2e-15
Q8SR85	351	Probable cell division co	yes	no	0.192	0.398	0.355	1e-14
Q8SR83	351	Probable cell division co	yes	no	0.192	0.398	0.348	2e-14
Q9Z0H0	564	Cell division cycle 7-rel	yes	no	0.223	0.289	0.287	4e-13
O00311	574	Cell division cycle 7-rel	yes	no	0.229	0.290	0.286	9e-13
Q6Z8C8	459	Cyclin-dependent kinase F	no	no	0.186	0.296	0.313	1e-11
P06243	507	Cell division control pro	yes	no	0.207	0.297	0.283	7e-11
O80345	479	Cyclin-dependent kinase F	no	no	0.203	0.308	0.296	4e-10

>sp|Q54DK3|CDC7_DICDI Probable serine/threonine-protein kinase cdc7 OS=Dictyostelium discoideum GN=cdc7 PE=3 SV=1

 Score = 92.0 bits (227), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 86/153 (56%), Gaps = 9/153 (5%)

Query: 540  LGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ- 598
            L N  + +  P AGT+GFRAPEVL +   Q   +DIWS GV LL ++ GR PFF  P+  
Sbjct: 903  LRNDPKPQPAPRAGTRGFRAPEVLLKYNKQTTAIDIWSVGVILLCMISGRYPFFISPDDM 962

Query: 599  -NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWC-KLITKRPDFLEV 656
             ++ +I  + G++ + ++A L  ++ S       + S+PP    +   +L ++     + 
Sbjct: 963  TSLAEIVSIIGTKKIVDIAHLLEKKISI------SHSIPPTPWRDLSRRLRSESSCDKQD 1016

Query: 657  IPSSLFDLVDKCLTVNPRLRISAEDALKHEFFA 689
            +P  L+DL+++CL  NP  RI+A +AL H F  
Sbjct: 1017 VPVELYDLLERCLDPNPLTRITASEALLHPFLV 1049

Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9UQY9|SPO4_SCHPO Cell cycle protein kinase spo4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spo4 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 21/166 (12%)

Query: 539 LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDP 596
           LL + +  K    AGT+GFRAPEVLFR Q+Q   +D+WS GV LL  +  R PFF   D 
Sbjct: 249 LLHDPRPTKRADRAGTRGFRAPEVLFRCQNQTSSIDVWSVGVILLCFLTHRYPFFRCEDD 308

Query: 597 EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPI-----NLPEWCKLITKRP 651
              I ++A + G   +   A LH +  S         ++P +     N  +    ITK  
Sbjct: 309 IDAIVELAHIFGRNGMSNCALLHGQIWS--------DNIPTLLDQKHNWLDLIASITKND 360

Query: 652 DFLEVIPSSLF------DLVDKCLTVNPRLRISAEDALKHEFFAPC 691
           + L +  SS +      DL+DK L ++P  R+ A+ AL+HEFF  C
Sbjct: 361 ENLILETSSDYQVALAIDLLDKLLELHPSKRVKAKTALQHEFFNAC 406

Required for the initiation of meiosis II and progression through anaphase II.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P50582|HSK1_SCHPO Cell cycle serine/threonine-protein kinase hsk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hsk1 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG--DPEQNIKDIAKLRGS 609
           AGT+GFRAPEVLF+   Q PK+DIWSAGV LL  +  R P F   D    + +IA + G 
Sbjct: 289 AGTRGFRAPEVLFKCSSQSPKVDIWSAGVILLSFLTKRFPMFNSKDDVDALMEIACIFGK 348

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEW--CKLITKRPDFLEVIPSS----LFD 663
            ++ + A LH             K +    L  W  C   +   + L   PS       D
Sbjct: 349 SEMRQCAALHGCTFETNVSTLTEKRVNFRKLILWASCGSASIYKEKLRHKPSQEERLCLD 408

Query: 664 LVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTTGNPSHKQ 718
            ++KCL ++   RISAE+AL H+F    +    K+      ++ DN+ G  S ++
Sbjct: 409 FLEKCLELDCNKRISAEEALDHDFLYLDNLAYEKKD---DDTAFDNSFGETSFEK 460

Required for G1/S transition. Plays a role in DNA replication checkpoint signaling through regulating rad3 and cds1. Involved in the maintenance of mitotic chromosome structures during S phase through regulating the function of rad21. Required for initiation of mitotic DNA replication through phosphorylating mcm2/cdc19. Required for genome integrity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8SR85|CDC71_ENCCU Probable cell division control protein 7 homolog 1 OS=Encephalitozoon cuniculi (strain GB-M1) GN=CDC7-1 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 9/149 (6%)

Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQN 599
           +G+     P AGT+GFRAPEVLFR Q Q   +D+WS GV  L ++  + PFF   D   +
Sbjct: 200 DGRPPMKAPRAGTRGFRAPEVLFRCQRQTGAIDMWSVGVIFLTILTTQYPFFYSSDDIDS 259

Query: 600 IKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS 659
           I +IA + G  ++ + AK + R      D     S+P   +P   + I +  +    I S
Sbjct: 260 IVEIATIFGHAEMRKAAKFYGRVWRSNID-----SIPEERIP--FETIVESLNPWAEIGS 312

Query: 660 SLFDLVDKCLTVNPRLRISAEDALKHEFF 688
             +DL+ + L +    RI+A DAL H FF
Sbjct: 313 DGYDLLYRMLDLCSSSRITASDALSHPFF 341

Serine/threonine-protein kinase. Needed for the initiation of DNA synthesis during mitosis as well as for synaptomenal complex formation and commitment to recombination during meiosis.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8SR83|CDC72_ENCCU Probable cell division control protein 7 homolog 2 OS=Encephalitozoon cuniculi (strain GB-M1) GN=CDC7-2 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 9/149 (6%)

Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQN 599
           +G+     P AGT+GFRAPEVLFR Q Q   +D+WS GV  L ++  + PFF   D   +
Sbjct: 200 DGRPPMKAPRAGTRGFRAPEVLFRCQRQTGAIDMWSVGVIFLTILTTQYPFFYSSDDIDS 259

Query: 600 IKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS 659
           I +IA + G  ++ + AK + R      D     S+P   +P   + I +  +    + S
Sbjct: 260 IVEIATIFGHAEMRKAAKFYGRVWRSNID-----SIPEERIP--FETIVESLNPWAEVGS 312

Query: 660 SLFDLVDKCLTVNPRLRISAEDALKHEFF 688
             +DL+ + L +    RI+A DAL H FF
Sbjct: 313 DGYDLLYRMLDLCSSSRITASDALSHPFF 341

Serine/threonine-protein kinase. Needed for the initiation of DNA synthesis during mitosis as well as for synaptomenal complex formation and commitment to recombination during meiosis.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9Z0H0|CDC7_MOUSE Cell division cycle 7-related protein kinase OS=Mus musculus GN=Cdc7 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 89/167 (53%), Gaps = 4/167 (2%)

Query: 180 ALKATGNHNDDQTNAKVLPNFES-FIVEEEEGSGGYGTVYRARRK-NDGTVVAIKCPHAN 237
           ++K +G   D +   + +P   + F ++++ G G + +VY A  +  +G    I   H  
Sbjct: 28  SVKLSGIKRDIEELCEAVPQLVNVFKIKDKIGEGTFSSVYLATAQLQEGHEEKIALKHLI 87

Query: 238 ASKH--YVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQ 295
            + H   ++ EL+ L   GG++ ++  + CF+  D     + +++H+    +   +   +
Sbjct: 88  PTSHPMRIAAELQCLTVAGGQDNVMGLKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQE 147

Query: 296 LQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           ++ Y Y LF AL  +H+ GIVHRDVKP NFL++ +  K  L+DF LA
Sbjct: 148 VREYMYNLFVALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLA 194

Seems to phosphorylate critical substrates that regulate the G1/S phase transition and/or DNA replication. Can phosphorylates MCM2 and MCM3.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O00311|CDC7_HUMAN Cell division cycle 7-related protein kinase OS=Homo sapiens GN=CDC7 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 4/171 (2%)

Query: 181 LKATGNHNDDQTNAKVLPNFES-FIVEEEEGSGGYGTVYRARRK-NDGTVVAIKCPHANA 238
            K  G   D +   + +P   + F +E++ G G + +VY A  +   G    I   H   
Sbjct: 35  FKLAGVKKDIEKLYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIP 94

Query: 239 SKH--YVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL 296
           + H   ++ EL+ L   GG++ ++  + CF+  D     + +++H+    +   +   ++
Sbjct: 95  TSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEV 154

Query: 297 QWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFD 347
           + Y   LF+AL  +H+ GIVHRDVKP NFL++ +  K  L+DF LA    D
Sbjct: 155 REYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHD 205

Seems to phosphorylate critical substrates that regulate the G1/S phase transition and/or DNA replication. Can phosphorylates MCM2 and MCM3.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6Z8C8|CDKF4_ORYSJ Cyclin-dependent kinase F-4 OS=Oryza sativa subsp. japonica GN=CDKF-4 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 17/153 (11%)

Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-------NELRMLER 252
            + F + +E G G +G+V+RA  K +G VVA+K       + Y S        E++ L R
Sbjct: 1   MDRFKMIKEVGDGTFGSVWRAINKQNGEVVAVK----KMKRKYYSFEECMSLREVKSLRR 56

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID-LSQLQWYGYC--LFRALAS 309
               N I+K +   +  D   F++E+++ +  +++K  +   S+ +   +C  +F+ALA 
Sbjct: 57  MNHPN-IVKLKEVIRENDILYFIMEYMECNLYQLMKDRVKPFSEAEVRNWCFQIFQALAY 115

Query: 310 LHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           +H++G  HRD+KP N L S   +K  L DF LA
Sbjct: 116 MHQRGYFHRDLKPENLLVSKDVIK--LADFGLA 146

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 3

>sp|P06243|CDC7_YEAST Cell division control protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC7 PE=1 SV=2

 Score = 69.7 bits (169), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 15/166 (9%)

Query: 197 LPNFES-FIVEEEEGSGGYGTVYRARR-------------KNDGT-VVAIKCPHANASKH 241
           LP  E+ + + ++ G G + +VY+A+               N G+  VA+K  +  +S  
Sbjct: 26  LPGIENEYKLIDKIGEGTFSSVYKAKDITGKITKKFASHFWNYGSNYVALKKIYVTSSPQ 85

Query: 242 YVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGY 301
            + NEL +L    G + +       +  D    VL +  H+      +++ +  ++ Y +
Sbjct: 86  RIYNELNLLYIMTGSSRVAPLCDAKRVRDQVIAVLPYYPHEEFRTFYRDLPIKGIKKYIW 145

Query: 302 CLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFD 347
            L RAL  +H +GI+HRD+KP NFLF+ +  +G L+DF LA    D
Sbjct: 146 ELLRALKFVHSKGIIHRDIKPTNFLFNLELGRGVLVDFGLAEAQMD 191

Serine/threonine-protein kinase. Needed for the initiation of DNA synthesis during mitosis as well as for synaptomenal complex formation and commitment to recombination during meiosis. Required for HTA1-HTB1 locus transcription repression.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O80345|CDKF1_ARATH Cyclin-dependent kinase F-1 OS=Arabidopsis thaliana GN=CDKF-1 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 17/165 (10%)

Query: 191 QTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRML 250
            T  +++  +E F   E  GSG Y  VYRARR +DG +VA+K      S     + L +L
Sbjct: 12  HTRPEIIAKYEIF---ERVGSGAYADVYRARRLSDGLIVALKEIFDYQSAFREIDALTIL 68

Query: 251 ERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVL-----KKEID------LSQLQWY 299
              G  N ++ +E  ++  ++   VLE ++ D   V+     KK+++      + +++ +
Sbjct: 69  N--GSPNVVVMHEYFWREEENAVLVLEFLRSDLAAVIRDGKRKKKVEGGDGFSVGEIKRW 126

Query: 300 GYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              +   + + H+  IVHRD+KPGN L S   V   L DF  A +
Sbjct: 127 MIQILTGVDACHRNLIVHRDLKPGNMLISDDGVLK-LADFGQARI 170

CDK-activating kinase that modulates CDKD-2 and CDKD-3 activities by phosphorylation of the T-loop. Activates CDKD-2 C-terminal domain (CTD) kinase activity. Activates CDKA-1 probably by phosphorylation. Posseses a CDK kinase activity independently of association with cyclin CYCH1-1. Phosphorylates the CTD of the large subunit of RNA polymerase II.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	728
359497149	690	PREDICTED: uncharacterized protein LOC10	0.839	0.885	0.544	0.0
147854522	995	hypothetical protein VITISV_037812 [Viti	0.861	0.630	0.540	0.0
147845401	984	hypothetical protein VITISV_015659 [Viti	0.888	0.657	0.515	0.0
297734625	516	unnamed protein product [Vitis vinifera]	0.668	0.943	0.622	1e-180
225453360	976	PREDICTED: uncharacterized protein LOC10	0.666	0.496	0.608	1e-178
296088908	532	unnamed protein product [Vitis vinifera]	0.648	0.887	0.603	1e-171
224071235	467	predicted protein [Populus trichocarpa]	0.604	0.942	0.621	1e-168
145340316	889	cell division control protein 7 [Arabido	0.781	0.640	0.518	1e-167
224137936	424	predicted protein [Populus trichocarpa]	0.564	0.969	0.652	1e-167
449466566	982	PREDICTED: uncharacterized protein LOC10	0.688	0.510	0.574	1e-164

>gi|359497149|ref|XP_002264714.2| PREDICTED: uncharacterized protein LOC100257048 [Vitis vinifera]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/701 (54%), Positives = 461/701 (65%), Gaps = 90/701 (12%)

Query: 41  KQNNASAAKTVVVNYANKGTNAETSEYDTIVEGEEKEQFTDLGTTKRIENLVL------P 94
           K  + S AK V  N A+  TN E  E   I EG+  +   D G T+   N +       P
Sbjct: 25  KSTSTSPAKNV--NQASAVTNLEMVENVKIDEGKGGKSSKDPGHTEEEMNHLFLSFSTAP 82

Query: 95  LDTTLID-------------KPSLDNEH-EIDVDIRAVSPAAELPVTNRQLRKPSAKTKF 140
           +DT L +              P LD E   I    +A+ PA E  ++  Q  K SA  K 
Sbjct: 83  MDTMLRNVFRSMNMMNHNDVTPVLDREPITIHEKSQALLPATEPSISQEQQTKSSANMKM 142

Query: 141 LHKDGIDPKGPK-LQASRHNKAFD-AKEKKQGKRDQISRI------MALKATGNHN---- 188
           +H+D + P+ P   ++S+H++A + ++EK+Q K +   R       M +K  G ++    
Sbjct: 143 VHRDALTPRLPAPSKSSKHSRAVEISEEKQQSKTNHKKRKLKQNNPMCIKEKGENSFSIS 202

Query: 189 -DDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNEL 247
             +Q   K+LP F++FIVEEEEGSGGYGTVY+ARRK DG   AIKCPH NA +H+V+NEL
Sbjct: 203 SKNQFEPKILPKFDAFIVEEEEGSGGYGTVYKARRKTDGMTFAIKCPHENAHRHHVNNEL 262

Query: 248 RMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRAL 307
           RMLERFGGKNFIIKYEG FK G+ D  VLEH+ HDRPEVLK+EID+ QLQWY YC+FRAL
Sbjct: 263 RMLERFGGKNFIIKYEGSFKIGNQDYCVLEHIDHDRPEVLKREIDIFQLQWYAYCMFRAL 322

Query: 308 ASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM-------------VGFDGSFNQAT 354
           ASLH++GIVHRDVKPGNFLFS K  KGYLIDFNLAM              G   SFNQ T
Sbjct: 323 ASLHRKGIVHRDVKPGNFLFSRKVNKGYLIDFNLAMDLCQKYGTISKPKEGHSLSFNQVT 382

Query: 355 LPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGS--NLEPKDLKRKVVRQTNVHNDLGSRNI 412
           +     VPP   RK+ S KSL        KGS   LEPK++K+K V Q   + D+GS+NI
Sbjct: 383 VTHPNSVPPTKSRKIQSTKSLETHNWYPMKGSKLTLEPKNMKKKPVGQMKAYIDMGSQNI 442

Query: 413 INSQGADGSGITSAKEATSTRTP-AERLREPLPCQGRKELISLLQKALRNPNYEASDCPA 471
           I SQGADGSGITSAK+ TS RT  +E+LREPLPCQGRKELISL Q+A++NPN+E+S  PA
Sbjct: 443 IKSQGADGSGITSAKDNTSARTSLSEKLREPLPCQGRKELISLAQEAMQNPNHESSRGPA 502

Query: 472 PRRKRVVAPPG---KVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLH 528
            +RKRV APPG   KV K+ VYI+PMPLH+ GIAVA                        
Sbjct: 503 SKRKRVAAPPGEEEKVDKKFVYISPMPLHAAGIAVA------------------------ 538

Query: 529 PVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG 588
                       G+GKQK++GPC GTKGFRAPEVL RS HQG K+DIWSAGVTLLYLMIG
Sbjct: 539 ------------GDGKQKREGPCVGTKGFRAPEVLLRSSHQGSKVDIWSAGVTLLYLMIG 586

Query: 589 RTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLIT 648
           RTPFFGD +QN+KDI KLRG+E LWEVAKLHNRESSFP DL  A+ +P I+L  WCK+ T
Sbjct: 587 RTPFFGDHQQNMKDIVKLRGNEALWEVAKLHNRESSFPVDLLDARFVPTIDLRGWCKVNT 646

Query: 649 KRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFA 689
           KRPDFL  IP SLFDLVDKCLTVNPR RI+A++AL+HEFF 
Sbjct: 647 KRPDFLRAIPGSLFDLVDKCLTVNPRSRINADEALRHEFFT 687

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854522|emb|CAN82786.1| hypothetical protein VITISV_037812 [Vitis vinifera]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/723 (54%), Positives = 471/723 (65%), Gaps = 96/723 (13%)

Query: 41  KQNNASAAKTVVVNYANKGTNAETSEYDTIVEGEEKEQFTDLGTTKRIENLVL------P 94
           K  + S AK V  N A+  TN E  E   I EG+  +   D G T+   N +       P
Sbjct: 292 KSTSTSPAKNV--NQASAVTNLEMVENVKIDEGKGGKSSKDPGHTEEEMNHLFLSFSTAP 349

Query: 95  LDTTLID-------------KPSLDNEH-EIDVDIRAVSPAAELPVTNRQLRKPSAKTKF 140
           +DT L +              P LD E   I    +A+ PA E  ++  Q  K SA  K 
Sbjct: 350 MDTMLRNVFRSMNMMNHNDVTPVLDREPITIHEKSQALLPATEPSISQEQQTKSSANMKM 409

Query: 141 LHKDGIDPKGPK-LQASRHNKAFD-AKEKKQGKRDQISRI------MALKATGNHN---- 188
           +H+D + P+ P   ++S+H++A + ++EK+Q K +   R       M +K  G ++    
Sbjct: 410 VHRDALTPRLPAPSKSSKHSRAVEISEEKQQSKTNHKKRKLKQNNPMCIKEKGENSFSIS 469

Query: 189 -DDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNEL 247
             +Q   K+LP F++FIVEEEEGSGGYGTVY+ARRK DG   AIKCPH NA +H+V+NEL
Sbjct: 470 SKNQFEPKILPKFDAFIVEEEEGSGGYGTVYKARRKTDGMTFAIKCPHENAHRHHVNNEL 529

Query: 248 RMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRAL 307
           RMLERFGGKNFIIKYEG FK G+ D  VLEH+ HDRPEVLK+EID+ QLQWY YC+FRAL
Sbjct: 530 RMLERFGGKNFIIKYEGSFKIGNQDYCVLEHIDHDRPEVLKREIDIFQLQWYAYCMFRAL 589

Query: 308 ASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM-------------VGFDGSFNQAT 354
           ASLH++GIVHRDVKPGNFLFS K  KGYLIDFNLAM              G   SFNQ T
Sbjct: 590 ASLHRKGIVHRDVKPGNFLFSRKVNKGYLIDFNLAMDLCQKYGTISKPKEGHSLSFNQVT 649

Query: 355 LPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGS--NLEPKDLKRKVVRQTNVHNDLGSRNI 412
           +     VPP   RK+ S KSL        KGS   LEPK++K+K V Q   + D+GS+NI
Sbjct: 650 VTHPNSVPPTKSRKIQSTKSLETHNWYPMKGSKLTLEPKNMKKKPVGQMKAYIDMGSQNI 709

Query: 413 INSQGADGSGITSAKEATSTRTP-AERLREPLPCQGRKELISLLQKALRNPNYEASDCPA 471
           I SQGADGSGITSAK+ TS RT  +E+LREPLPCQGRKELISL Q+A++NPN+E+S  PA
Sbjct: 710 IKSQGADGSGITSAKDNTSARTSLSEKLREPLPCQGRKELISLAQEAMQNPNHESSRGPA 769

Query: 472 PRRKRVVAPPG---KVGKELVYITPMPLHSNGIAVAGAGLM-NKGPSDLSDLQILLLTKL 527
            +RKRV APPG   KV K+ VYI+PMPLH+ GIAVAGAGL+ NKG               
Sbjct: 770 SKRKRVAAPPGEEEKVDKKFVYISPMPLHAAGIAVAGAGLLKNKGS-------------- 815

Query: 528 HPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPE---------------------VLFRS 566
                 I   L  G+GKQK++GPC GTKGFRAPE                     VL RS
Sbjct: 816 ------ITSNLFPGDGKQKREGPCVGTKGFRAPEAFIWAPLHVKQMELNAQRLMQVLLRS 869

Query: 567 QHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFP 626
            HQG K+DIWSAGVTLLYLMIGRTPFFGD +QN+KDI KLRG+E LWEVAKLHNRESSFP
Sbjct: 870 SHQGSKVDIWSAGVTLLYLMIGRTPFFGDHQQNMKDIVKLRGNEALWEVAKLHNRESSFP 929

Query: 627 EDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHE 686
            DL  A+ +P I+L  WCK+ TKRPDFL  IP SLFDLVDKCLTVNPR RI+A++AL+HE
Sbjct: 930 VDLLDARFVPTIDLQGWCKVNTKRPDFLRAIPGSLFDLVDKCLTVNPRSRINADEALRHE 989

Query: 687 FFA 689
           FF 
Sbjct: 990 FFT 992

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845401|emb|CAN83359.1| hypothetical protein VITISV_015659 [Vitis vinifera]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/728 (51%), Positives = 458/728 (62%), Gaps = 81/728 (11%)

Query: 31  VDPTYCLDDMKQNNASAAKTVVVN----------YANKGTNAETSEYDTIVEGEEKEQFT 80
           V  T+CL   KQN  SA K  +              +  T  E  E   +  G  KE+  
Sbjct: 287 VTATFCLKVDKQNTVSAVKAGMSYIHSCEAPMQLVKDTRTQVEIKEGGLVNSGTSKEEKK 346

Query: 81  DLGTTKRI--ENLVLPLDTTL---IDKPSLDNEHEIDVDIRAVSP------AAELPVTNR 129
           +L   +     + VL  D+ L   I   +++ E    V+   + P      A E P  + 
Sbjct: 347 NLNLLEEAAKNDQVLSKDSELQNSITIVNMEREQSKKVENHGMFPSDEGFSAQEHPTKSF 406

Query: 130 QLRKPSAKTKFLHKDGI--DPKGPKL--QASRHNKAFDAKEK-KQGKRDQISRIMALKAT 184
              K S K     +  I  +   P+L  Q +   K    ++K K   ++ +     + A 
Sbjct: 407 VNLKASQKIVLPSQSRILLESNSPRLSDQCNISQKVISMRQKIKHSHKNNMHAKENIAAP 466

Query: 185 GNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS 244
               +D    K LP+FESF++EEEEGSGGYGTVYRA+RK++G  VA+KCPHANA  HYV 
Sbjct: 467 ----EDMLEKKKLPHFESFVIEEEEGSGGYGTVYRAQRKDNGKQVALKCPHANAQTHYVY 522

Query: 245 NELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLF 304
           NEL+MLERFGG+NFIIKYEG FK    +CFVLEHV+HDRPEVLK+EID+ QLQWYGYC+F
Sbjct: 523 NELKMLERFGGRNFIIKYEGSFKGKTGECFVLEHVEHDRPEVLKREIDVFQLQWYGYCMF 582

Query: 305 RALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM---------VGFDGSFNQATL 355
           +ALA LH+QG+VHRDVKPGNFLFS K  KGYLIDFNLA+              SF+   L
Sbjct: 583 KALAYLHRQGVVHRDVKPGNFLFSRKLNKGYLIDFNLALDLQRKYASGSKSKSSFDHVPL 642

Query: 356 PGTKYVPPVNGRKVPSAK--SLVAVKQDTRKGSNLEPKDLKRKV-VRQTNVHNDLGSRNI 412
           P +K  P    +K    K   +V  K      + LEP ++K+         H D G RNI
Sbjct: 643 PLSKSSPSTKDKKFMRDKFEGIVGSK------ATLEPNNMKKMANADPLQTHPDFGGRNI 696

Query: 413 INSQGADGSGITSAKEATSTRTP-AERLREPLPCQGRKELISLLQKALRNPNYEASDCPA 471
             SQGADGSGITS K+ TSTRTP AERLREPLP  GRKELISL Q A++ PN +A + PA
Sbjct: 697 FRSQGADGSGITSTKDVTSTRTPSAERLREPLPSLGRKELISLAQHAMQGPNQDAINIPA 756

Query: 472 PRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVP 531
            +RKRV A PGKV +++VY++PMPLHS G+AV GAGLM                      
Sbjct: 757 SQRKRVAA-PGKVDEKIVYLSPMPLHSMGVAVTGAGLMRSK------------------- 796

Query: 532 VLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP 591
                    G+GK KK+GPC GTKGFRAPEVLFRS HQG K+DIWSAGVTLLYLM+GR+P
Sbjct: 797 ---------GDGKHKKEGPCVGTKGFRAPEVLFRSLHQGSKVDIWSAGVTLLYLMVGRSP 847

Query: 592 FFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRP 651
           F GDP+QNIKDI KLRGSEDLWEVAKLHNRESSFP +L+  + LP + L  WCKL TKRP
Sbjct: 848 FVGDPKQNIKDIMKLRGSEDLWEVAKLHNRESSFPVELFDIQFLPSVELKHWCKLNTKRP 907

Query: 652 DFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQG---SSID 708
           +F ++IP SLFDLVDKCLTVNPRLRISAE+AL+HEFFAPCHE LRKQ++LRQG    S D
Sbjct: 908 EFFKLIPRSLFDLVDKCLTVNPRLRISAEEALRHEFFAPCHESLRKQRMLRQGLRLESGD 967

Query: 709 NTTGNPSH 716
             +G+  H
Sbjct: 968 YRSGHLEH 975

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734625|emb|CBI16676.3| unnamed protein product [Vitis vinifera]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 333/535 (62%), Positives = 391/535 (73%), Gaps = 48/535 (8%)

Query: 195 KVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFG 254
           K LP+FESF++EEEEGSGGYGTVYRA+RK++G  VA+KCPHANA  HYV NEL+MLERFG
Sbjct: 5   KKLPHFESFVIEEEEGSGGYGTVYRAQRKDNGKQVALKCPHANAQTHYVYNELKMLERFG 64

Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQG 314
           G+NFIIKYEG FK    DCFVLEHV+HDRPEVLK+EID+ QLQWYGYC+F+ALA LH+QG
Sbjct: 65  GRNFIIKYEGSFKGKTGDCFVLEHVEHDRPEVLKREIDVFQLQWYGYCMFKALAYLHRQG 124

Query: 315 IVHRDVKPGNFLFSCKAVKGYLIDFNLAM---------VGFDGSFNQATLPGTKYVPPVN 365
           +VHRDVKPGNFLFS K  KGYLIDFNLA+              SF+   LP +K  P   
Sbjct: 125 VVHRDVKPGNFLFSRKLNKGYLIDFNLALDLQRKYASGSKSKSSFDHVPLPLSKSSPSTK 184

Query: 366 GRKVPSAK--SLVAVKQDTRKGSNLEPKDLKRKV-VRQTNVHNDLGSRNIINSQGADGSG 422
            +K    K   +V  K      + LEP ++K+         H DLG RNI  SQGADGSG
Sbjct: 185 DKKFMRGKFEGIVGSK------ATLEPNNMKKMANADPLKTHPDLGGRNIFRSQGADGSG 238

Query: 423 ITSAKEATSTRTP-AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPP 481
           ITS K+ TSTRTP AERLREPLP  GRKELISL Q A++ PN +A + PA +RKRV A P
Sbjct: 239 ITSTKDVTSTRTPSAERLREPLPSLGRKELISLAQHAMQGPNQDAINIPASQRKRVAA-P 297

Query: 482 GKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLG 541
           GKV +++VY++PMPLHS G+AV GAGLM                               G
Sbjct: 298 GKVDEKIVYLSPMPLHSMGVAVTGAGLMRSK----------------------------G 329

Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIK 601
           +GK KK+GPC GTKGFRAPEVLFRS HQG K+DIWSAGVTLLYLM+GR+PF GDP+QNIK
Sbjct: 330 DGKHKKEGPCVGTKGFRAPEVLFRSLHQGSKVDIWSAGVTLLYLMVGRSPFVGDPKQNIK 389

Query: 602 DIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL 661
           DI KLRGSEDLWEVAKLHNRESSFP +L+  + LP + L  WCKL TKRP+F ++IP SL
Sbjct: 390 DIMKLRGSEDLWEVAKLHNRESSFPVELFDIQFLPSVELKHWCKLNTKRPEFFKLIPRSL 449

Query: 662 FDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTTGNPSH 716
           FDLVDKCLTVNPRLRISAE+AL+HEFFAPCHE L+KQ++LRQG  +++      H
Sbjct: 450 FDLVDKCLTVNPRLRISAEEALRHEFFAPCHESLKKQRMLRQGLRLESGEYRSGH 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453360|ref|XP_002270672.1| PREDICTED: uncharacterized protein LOC100261519 [Vitis vinifera]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 329/541 (60%), Positives = 388/541 (71%), Gaps = 56/541 (10%)

Query: 189 DDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELR 248
           +D    K LP+FESF++EEEEGSGGYGTVYRA+RK++G  VA+KCPHANA  HYV NEL+
Sbjct: 467 EDMLEKKKLPHFESFVIEEEEGSGGYGTVYRAQRKDNGKQVALKCPHANAQTHYVYNELK 526

Query: 249 MLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALA 308
           MLERFGG+NFIIKYEG FK    DCFVLEHV+HDRPEVLK+EID+ QLQWYGYC+F+ALA
Sbjct: 527 MLERFGGRNFIIKYEGSFKGKTGDCFVLEHVEHDRPEVLKREIDVFQLQWYGYCMFKALA 586

Query: 309 SLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM---------VGFDGSFNQATLPGTK 359
            LH+QG+VHRDVKPGNFLFS K  KGYLIDFNLA+              SF+   LP +K
Sbjct: 587 YLHRQGVVHRDVKPGNFLFSRKLNKGYLIDFNLALDLQRKYASGSKSKSSFDHVPLPLSK 646

Query: 360 YVPPVNGRKVPSAK--SLVAVKQDTRKGSNLEPKDLKRKV-VRQTNVHNDLGSRNIINSQ 416
             P    +K    K   +V  K      + LEP ++K+         H DLG RNI  SQ
Sbjct: 647 SSPSTKDKKFMRGKFEGIVGSK------ATLEPNNMKKMANADPLKTHPDLGGRNIFRSQ 700

Query: 417 GADGSGITSAKEATSTRTP-AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRK 475
           GADGSGITS K+ TSTRTP AERLREPLP  GRKELISL Q A++ PN +A + PA +RK
Sbjct: 701 GADGSGITSTKDVTSTRTPSAERLREPLPSLGRKELISLAQHAMQGPNQDAINIPASQRK 760

Query: 476 RVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLII 535
           RV A PGKV +++VY++PMPLHS G+AV                                
Sbjct: 761 RVAA-PGKVDEKIVYLSPMPLHSMGVAVT------------------------------- 788

Query: 536 FYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD 595
                G+GK KK+GPC GTKGFRAPEVLFRS HQG K+DIWSAGVTLLYLM+GR+PF GD
Sbjct: 789 -----GDGKHKKEGPCVGTKGFRAPEVLFRSLHQGSKVDIWSAGVTLLYLMVGRSPFVGD 843

Query: 596 PEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLE 655
           P+QNIKDI KLRGSEDLWEVAKLHNRESSFP +L+  + LP + L  WCKL TKRP+F +
Sbjct: 844 PKQNIKDIMKLRGSEDLWEVAKLHNRESSFPVELFDIQFLPSVELKHWCKLNTKRPEFFK 903

Query: 656 VIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTTGNPS 715
           +IP SLFDLVDKCLTVNPRLRISAE+AL+HEFFAPCHE L+KQ++LRQG  +++      
Sbjct: 904 LIPRSLFDLVDKCLTVNPRLRISAEEALRHEFFAPCHESLKKQRMLRQGLRLESGEYRSG 963

Query: 716 H 716
           H
Sbjct: 964 H 964

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088908|emb|CBI38457.3| unnamed protein product [Vitis vinifera]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 336/557 (60%), Positives = 387/557 (69%), Gaps = 85/557 (15%)

Query: 190 DQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRM 249
           +Q   K+LP F++FIVEEEEGSGGYGTVY+ARRK DG   AIKCPH NA +H+V+NELRM
Sbjct: 1   NQFEPKILPKFDAFIVEEEEGSGGYGTVYKARRKTDGMTFAIKCPHENAHRHHVNNELRM 60

Query: 250 LERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALAS 309
           LERFGGKNFIIKYEG FK G+ D  VLEH+ HDRPEVLK+EID+ QLQWY YC+FRALAS
Sbjct: 61  LERFGGKNFIIKYEGSFKIGNQDYCVLEHIDHDRPEVLKREIDIFQLQWYAYCMFRALAS 120

Query: 310 LHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV------------------------- 344
           LH++GIVHRDVKPGNFLFS K  KGYLIDFNLAMV                         
Sbjct: 121 LHRKGIVHRDVKPGNFLFSRKVNKGYLIDFNLAMVSDTSIIVCANHCDLLYHLSFFFFSF 180

Query: 345 --------------------------GFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAV 378
                                     G   SFNQ T+     VPP   RK+ S KSL   
Sbjct: 181 LWFYFHLTKKSELINYFVYFIGKPKEGHSLSFNQVTVTHPNSVPPTKSRKIQSTKSLETH 240

Query: 379 KQDTRKGS--NLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTP- 435
                KGS   LEPK++K+K V Q   + D+GS+NII SQGADGSGITSAK+ TS RT  
Sbjct: 241 NWYPMKGSKLTLEPKNMKKKPVGQMKAYIDMGSQNIIKSQGADGSGITSAKDNTSARTSL 300

Query: 436 AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPG---KVGKELVYIT 492
           +E+LREPLPCQGRKELISL Q+A++NPN+E+S  PA +RKRV APPG   KV K+ VYI+
Sbjct: 301 SEKLREPLPCQGRKELISLAQEAMQNPNHESSRGPASKRKRVAAPPGEEEKVDKKFVYIS 360

Query: 493 PMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCA 552
           PMPLH+ GIAVAGAGL+                               G+GKQK++GPC 
Sbjct: 361 PMPLHAAGIAVAGAGLLKNK----------------------------GDGKQKREGPCV 392

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GTKGFRAPEVL RS HQG K+DIWSAGVTLLYLMIGRTPFFGD +QN+KDI KLRG+E L
Sbjct: 393 GTKGFRAPEVLLRSSHQGSKVDIWSAGVTLLYLMIGRTPFFGDHQQNMKDIVKLRGNEAL 452

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
           WEVAKLHNRESSFP DL  A+ +P I+L  WCK+ TKRPDFL  IP SLFDLVDKCLTVN
Sbjct: 453 WEVAKLHNRESSFPVDLLDARFVPTIDLRGWCKVNTKRPDFLRAIPGSLFDLVDKCLTVN 512

Query: 673 PRLRISAEDALKHEFFA 689
           PR RI+A++AL+HEFF 
Sbjct: 513 PRSRINADEALRHEFFT 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071235|ref|XP_002303379.1| predicted protein [Populus trichocarpa] gi|222840811|gb|EEE78358.1| predicted protein [Populus trichocarpa]

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 313/504 (62%), Positives = 361/504 (71%), Gaps = 64/504 (12%)

Query: 249 MLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALA 308
           +  +F GKNF+IKYEGC K  +SDC VL +V HDRPEVLKKEID+ QL+WYGYC+FRALA
Sbjct: 1   LFFQFRGKNFVIKYEGCLKNQNSDCLVLAYVDHDRPEVLKKEIDVFQLRWYGYCMFRALA 60

Query: 309 SLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVG-------------------FDG 348
           +LHKQ G+VHRDVKPGNFLFSCKA KGYLIDFNLA+V                     D 
Sbjct: 61  TLHKQQGVVHRDVKPGNFLFSCKASKGYLIDFNLALVSDIFCFFFFLFSFSDKSKAENDI 120

Query: 349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSN--LEPKDLKRKVVRQTNVHND 406
           SFN   +   KY+PP   R+ P  K L AV     KG N  LE K++KRK          
Sbjct: 121 SFNNVAVSNAKYIPPSKSRRFPGTKFLDAVDVGAIKGWNSTLEAKNVKRK---------- 170

Query: 407 LGSRNIINSQGADGSGITSAKEATSTRTP-AERLREPLPCQGRKELISLLQKALRNPNYE 465
               + + SQGADGSG+TS K+ATS RTP AERL+EPLPCQGRKELISLL +A+++PN+E
Sbjct: 171 --PDSSMKSQGADGSGVTSVKDATSARTPSAERLKEPLPCQGRKELISLLHEAMQSPNHE 228

Query: 466 ASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLT 525
           AS  PA  RKR+ APPGK+    +Y+TPMPLHS  I VAG GL+                
Sbjct: 229 ASSVPASMRKRIAAPPGKIDGRHIYLTPMPLHSTDITVAGIGLVKN-------------- 274

Query: 526 KLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYL 585
                          G+GK KK+GPC GTKGFRAPEVLFRS +QGPK+DIWSAGVTLLYL
Sbjct: 275 --------------KGDGKNKKEGPCVGTKGFRAPEVLFRSLYQGPKVDIWSAGVTLLYL 320

Query: 586 MIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCK 645
           +IG+TPF+GDPEQNIKDIAKLRGSEDLWE++KLH+RESSFP DLY  +SLPP  L EWCK
Sbjct: 321 IIGKTPFYGDPEQNIKDIAKLRGSEDLWEISKLHDRESSFPVDLYNMQSLPPTTLWEWCK 380

Query: 646 LITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGS 705
           L +KR DFL+ +PSSL DLVDKCLTVNPRLRISAEDALKHEFFAPCHE LRKQKLLRQG 
Sbjct: 381 LNSKRQDFLDAVPSSLIDLVDKCLTVNPRLRISAEDALKHEFFAPCHESLRKQKLLRQGL 440

Query: 706 SIDNTTGN-PSHKQCSARPLKISQ 728
           S+D+ T N PSH Q  ARP+KI Q
Sbjct: 441 SLDSRTNNIPSHGQSIARPIKIYQ 464

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145340316|ref|NP_193430.3| cell division control protein 7 [Arabidopsis thaliana] gi|110738029|dbj|BAF00949.1| kinase like protein [Arabidopsis thaliana] gi|332658429|gb|AEE83829.1| cell division control protein 7 [Arabidopsis thaliana]

 Score =  596 bits (1537), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 329/634 (51%), Positives = 404/634 (63%), Gaps = 65/634 (10%)

Query: 89  ENLVLPLDTTLIDKPSLDNEHEIDVDIRAVSPAAELPVTNRQLRKPSA----KTKFLHKD 144
           EN + P+      +  L ++H +D+     +P  ELP+      KPSA    + K L + 
Sbjct: 292 ENELEPVQIVDDTEDLLVDDHTVDI---VSTPDRELPL------KPSATEANQDKSLVQK 342

Query: 145 GID----PKGPKLQASRHNKAFDAKEKKQGKRDQISRIMALKATGNHNDDQTNAKVLPNF 200
            +D    P   K  +         K K   KR Q    + LK       DQ     +P+F
Sbjct: 343 TLDQCKLPGNSKTYSCSPEIKHTRKSKVIQKRKQNFNTVRLK----DQKDQAKHNTIPDF 398

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII 260
           +S+ + EEEGSGGYG VY+A RK DGT  AIKCPH  A K+YV+NE+RMLERFGGKN II
Sbjct: 399 DSYTIVEEEGSGGYGIVYKATRKTDGTEFAIKCPHVGAQKYYVNNEIRMLERFGGKNCII 458

Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDV 320
           K+EGC K GDSDC +LEH++HDRP+ LK+EID+ QLQWYGYC+F+AL+SLHKQG+VHRDV
Sbjct: 459 KHEGCLKNGDSDCIILEHLEHDRPDSLKREIDVYQLQWYGYCMFKALSSLHKQGVVHRDV 518

Query: 321 KPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQ 380
           KPGNFLFS K  KGYLIDFNLAM                 +P  + +     KSL AV +
Sbjct: 519 KPGNFLFSRKTNKGYLIDFNLAMDLHQKYRRADKSKAASGLPTASKKHHTLVKSLDAVNR 578

Query: 381 DTRKGS--NLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRT--PA 436
            T K S   L P  +K K   +T   ND+     +NSQGA+GSG+TSAK+ TSTR     
Sbjct: 579 GTNKPSQKTLAPNSIK-KAAGKTRARNDMTRWERLNSQGAEGSGLTSAKDVTSTRNNPSG 637

Query: 437 ERLREPLPCQGRKELISLLQKALRNP--NYE-ASDCPAPRRKRVVAPPGKVGKELVYITP 493
           E+ REPLPC GRK L+  LQ+ +  P  N+E +S  P   RKRV A PGK  KEL+Y+TP
Sbjct: 638 EKRREPLPCHGRKALLDFLQETMSVPIPNHEVSSKAPTSMRKRVAALPGKAEKELLYLTP 697

Query: 494 MPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAG 553
           MPL SNG   AG  +                                    +KKDGPC+G
Sbjct: 698 MPLCSNGRPEAGDVI------------------------------------EKKDGPCSG 721

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLW 613
           TKGFRAPEV FRS HQGPK+D+WSAGVTLLYL++GRTPF GDPEQNIKDIA+LRGSE+LW
Sbjct: 722 TKGFRAPEVCFRSLHQGPKIDVWSAGVTLLYLIMGRTPFTGDPEQNIKDIAQLRGSEELW 781

Query: 614 EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNP 673
           EVAKLHNRESSFP++LY ++ L  + L +WC+L TKR +FL+VIP SL DLVDKCLTVNP
Sbjct: 782 EVAKLHNRESSFPKELYESRYLKGMELRKWCELNTKRREFLDVIPLSLLDLVDKCLTVNP 841

Query: 674 RLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSI 707
           R RISAEDALKH+FF P HE LR Q LL+Q  ++
Sbjct: 842 RRRISAEDALKHDFFHPVHETLRNQMLLKQQPTV 875

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137936|ref|XP_002326477.1| predicted protein [Populus trichocarpa] gi|222833799|gb|EEE72276.1| predicted protein [Populus trichocarpa]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 298/457 (65%), Positives = 344/457 (75%), Gaps = 46/457 (10%)

Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQG 314
           GKNF+IK+EGC K  +SDCFVLE+V+HDRPEVLKKEID+ QL+WYGYC+FRALASLHKQG
Sbjct: 6   GKNFVIKFEGCLKNQNSDCFVLEYVEHDRPEVLKKEIDVFQLRWYGYCMFRALASLHKQG 65

Query: 315 IVHRDVKPGNFLFSCKAVKGYLIDFNLAMV-----GFDGSFNQATLPGTKYVPPVNGRKV 369
           +VHRD+KPGNFLFSCKA KGYLIDFNLA+V       D SFN       KYVPP   R+ 
Sbjct: 66  VVHRDIKPGNFLFSCKANKGYLIDFNLALVSDIFFANDVSFNSVAASNAKYVPPSKSRRF 125

Query: 370 PSAKSLVAVKQDTRKG--SNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAK 427
           P +K L AV     K   S LE K++K+K V           RNI+ SQGADGSGITS K
Sbjct: 126 PGSKFLDAVDLGAIKDFKSTLEAKNVKKKAV-----------RNIMISQGADGSGITSVK 174

Query: 428 EATSTRTP-AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGK 486
           +ATS RTP AER++EPLP +GRKELISLL +A+++PN+EAS  PA  RKR+ APPGKV  
Sbjct: 175 DATSARTPSAERMKEPLPSKGRKELISLLHEAMQSPNHEASSFPASMRKRIAAPPGKVDG 234

Query: 487 ELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQK 546
             +Y+TPMP+HS GI VAG GL+                               G+GK K
Sbjct: 235 RHIYLTPMPVHSTGIPVAGIGLVKNK---------------------------CGDGKNK 267

Query: 547 KDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKL 606
           K+GPC GTKGFRAPEVLFRS HQGPK+DIWSAGVTLLYL+IG+TPF+GDPEQNIKDIAKL
Sbjct: 268 KEGPCVGTKGFRAPEVLFRSLHQGPKVDIWSAGVTLLYLIIGKTPFYGDPEQNIKDIAKL 327

Query: 607 RGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD 666
           RGSEDLWEV+KLHNRESSFP DLY  +SL P  + EWCKL +KR DFL+ +PSSL DLVD
Sbjct: 328 RGSEDLWEVSKLHNRESSFPADLYNMQSLAPTTIWEWCKLNSKRQDFLDAVPSSLIDLVD 387

Query: 667 KCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQ 703
           KCLTVNPRLRISA+DALKHEFFAPC+E LR+QKLLRQ
Sbjct: 388 KCLTVNPRLRISADDALKHEFFAPCNESLRRQKLLRQ 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466566|ref|XP_004150997.1| PREDICTED: uncharacterized protein LOC101210717 [Cucumis sativus]

 Score =  585 bits (1507), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 307/534 (57%), Positives = 378/534 (70%), Gaps = 33/534 (6%)

Query: 197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGK 256
            P FESFIVEEEEGSGGYGTVYRARRK DG  +AIKCPH NA +H V+NEL+MLERFGG+
Sbjct: 480 FPQFESFIVEEEEGSGGYGTVYRARRKKDGKRIAIKCPHVNAHRHNVNNELKMLERFGGR 539

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIV 316
           NFIIKYEG    G+S+C +LEHV+HDRPEVLKKEID+ +LQWYG+CLFRALA LHKQG++
Sbjct: 540 NFIIKYEGSISSGNSECLILEHVEHDRPEVLKKEIDIVRLQWYGFCLFRALAYLHKQGVM 599

Query: 317 HRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRK-VPSAKSL 375
           HRDVKPGNFLFS K  KGYLIDFNLAM   D     +         PV  +K V  + SL
Sbjct: 600 HRDVKPGNFLFSRKQNKGYLIDFNLAM---DLQQKYSVASKLHCDTPVKEKKDVRGSVSL 656

Query: 376 VAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRT- 434
              +    K      K+LKR+V      + ++   + + SQGADGSG+TSAK+ TS RT 
Sbjct: 657 TGGETGKSKQPGEHEKNLKRRVYVPLKQYPNMRGGSAVRSQGADGSGVTSAKDVTSARTF 716

Query: 435 PAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPM 494
             E++REPLP QGRKEL+SL+Q ALRN +    +    RRKR+ AP  K    +++ +PM
Sbjct: 717 STEKMREPLPSQGRKELLSLVQNALRNADLATQNSSDLRRKRIAAPQAKEDNSIIHPSPM 776

Query: 495 PLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGT 554
            +H  GI+V                         P P L+      G+ K+K++G CAGT
Sbjct: 777 LVHCTGISV-------------------------PAPRLL---RTKGDAKRKREGSCAGT 808

Query: 555 KGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWE 614
           KGFRAPEVLFRS HQGP++D+WSAGVTLLYLM+GR+PF GDPEQNIKDIAKLRGSEDLWE
Sbjct: 809 KGFRAPEVLFRSLHQGPQVDVWSAGVTLLYLMVGRSPFTGDPEQNIKDIAKLRGSEDLWE 868

Query: 615 VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR 674
           VAKLH+RESSFP +L+  KS PP++L  W K  TKRPDF+++IP SLFDLVDKCLTVNPR
Sbjct: 869 VAKLHDRESSFPGELFNIKSFPPMDLQSWVKAHTKRPDFVKLIPRSLFDLVDKCLTVNPR 928

Query: 675 LRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTTGNPSHKQCSARPLKISQ 728
            RI+A++ALKHEFF PC+E LRKQK+LR+GSS  +       ++   +P ++S+
Sbjct: 929 QRITADEALKHEFFIPCYERLRKQKMLRRGSSSTSANVLGEREKVLGQPFEVSR 982

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	728
TAIR|locus:2130290	889	AT4G16970 [Arabidopsis thalian	0.652	0.534	0.424	1.9e-155
UNIPROTKB|I3LD81	571	CDC7 "Uncharacterized protein"	0.321	0.409	0.270	3e-29
UNIPROTKB|E2RA52	576	CDC7 "Uncharacterized protein"	0.321	0.406	0.262	6.9e-29
UNIPROTKB|O00311	574	CDC7 "Cell division cycle 7-re	0.321	0.407	0.255	2.5e-28
DICTYBASE|DDB_G0292152	1061	cdc7 "CDC7 family protein kina	0.195	0.133	0.344	6.6e-27
UNIPROTKB|F1NB13	575	CDC7 "Uncharacterized protein"	0.236	0.299	0.291	1e-26
ZFIN|ZDB-GENE-041114-113	549	cdc7 "cell division cycle 7 ho	0.134	0.178	0.386	1.3e-26
FB|FBgn0032677	665	CG5790 [Drosophila melanogaste	0.287	0.314	0.268	2.6e-26
UNIPROTKB|J3KQS2	546	CDC7 "Cell division cycle 7-re	0.281	0.375	0.258	5.7e-26
UNIPROTKB|D4A8S5	565	Cdc7 "Protein Cdc7" [Rattus no	0.324	0.417	0.261	9.8e-25

TAIR|locus:2130290 AT4G16970 [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.9e-155, Sum P(2) = 1.9e-155
 Identities = 220/518 (42%), Positives = 289/518 (55%)

Query:    26 NSHLRVDPTYCLDDMKQNNASAAKTVVVNYANKGTNAETSEYDTIVEGEEKEQ---F--- 79
             N+ + V+PT+ L++ K +  S  +         G          I EG++K +   F   
Sbjct:   214 NASVDVNPTHRLEESKNDLPSPQEDGYYERPEIGDFQIADNQILIEEGDDKNKKDLFPKG 273

Query:    80 ---TDLGTTKRIENLVLPLDTTLIDKPSLDNEHEIDVDIRAV----SPAAELPVTNRQLR 132
                TD   +  + +L +P +  L     +D+  ++ VD   V    +P  ELP+      
Sbjct:   274 EIQTDSVQSDPVASL-MPTENELEPVQIVDDTEDLLVDDHTVDIVSTPDRELPL------ 326

Query:   133 KPSA----KTKFLHKDGID----PKGPKLQASRHNKAFDAKEKKQGKRDQISRIMALKAT 184
             KPSA    + K L +  +D    P   K  +         K K   KR Q    + LK  
Sbjct:   327 KPSATEANQDKSLVQKTLDQCKLPGNSKTYSCSPEIKHTRKSKVIQKRKQNFNTVRLK-- 384

Query:   185 GNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS 244
                  DQ     +P+F+S+ + EEEGSGGYG VY+A RK DGT  AIKCPH  A K+YV+
Sbjct:   385 --DQKDQAKHNTIPDFDSYTIVEEEGSGGYGIVYKATRKTDGTEFAIKCPHVGAQKYYVN 442

Query:   245 NELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLF 304
             NE+RMLERFGGKN IIK+EGC K GDSDC +LEH++HDRP+ LK+EID+ QLQWYGYC+F
Sbjct:   443 NEIRMLERFGGKNCIIKHEGCLKNGDSDCIILEHLEHDRPDSLKREIDVYQLQWYGYCMF 502

Query:   305 RALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLP-GTKYVPP 363
             +AL+SLHKQG+VHRDVKPGNFLFS K  KGYLIDFNLAM      + +A        +P 
Sbjct:   503 KALSSLHKQGVVHRDVKPGNFLFSRKTNKGYLIDFNLAM-DLHQKYRRADKSKAASGLPT 561

Query:   364 VNGRKVPSAKSLVAVKQDTRKGSN--LEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGS 421
              + +     KSL AV + T K S   L P  +K K   +T   ND+     +NSQGA+GS
Sbjct:   562 ASKKHHTLVKSLDAVNRGTNKPSQKTLAPNSIK-KAAGKTRARNDMTRWERLNSQGAEGS 620

Query:   422 GITSAKEATSTRT-PA-ERLREPLPCQGRKELISLLQKALRNP--NYEASD-CXXXXXXX 476
             G+TSAK+ TSTR  P+ E+ REPLPC GRK L+  LQ+ +  P  N+E S          
Sbjct:   621 GLTSAKDVTSTRNNPSGEKRREPLPCHGRKALLDFLQETMSVPIPNHEVSSKAPTSMRKR 680

Query:   477 XXXXXXXXGKELVYITPMPLHSNGIAVAGAGLMNK-GP 513
                      KEL+Y+TPMPL SNG   AG  +  K GP
Sbjct:   681 VAALPGKAEKELLYLTPMPLCSNGRPEAGDVIEKKDGP 718

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0045727 "positive regulation of translation" evidence=RCA

UNIPROTKB|I3LD81 CDC7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 202 (76.2 bits), Expect = 3.0e-29, Sum P(3) = 3.0e-29
 Identities = 66/244 (27%), Positives = 113/244 (46%)

Query:   182 KATGNHNDDQTNAKVLPNFES-FIVEEEEGSGGYGTVYRARRKND-GTVVAIKCPHANAS 239
             K  G   D +   + +P   + F ++++ G G + +VY A  +   G    I   H   +
Sbjct:    36 KLPGVKKDIEKLYEAVPQLGNVFKIKDKIGEGTFSSVYLATAQLQVGPEETIALKHLIPT 95

Query:   240 KHYV--SNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQ 297
              H V  + EL+ L   GG++ ++  + CF+  D     + +++H+    +   +   +++
Sbjct:    96 SHPVRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVR 155

Query:   298 WYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG 357
              Y + LFRAL  +H+ GIVHRDVKP NFL++ +  K  L+DF LA     G+ +   +  
Sbjct:   156 EYMFNLFRALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQ----GT-HDTKIEL 210

Query:   358 TKYVPPVNGRKVPSA-KSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQ 416
              K+V     ++  S  KS V             PK+L  +   +T+V        I   Q
Sbjct:   211 LKFVQSEAQQESCSQNKSYVITGSKISLSGPAAPKELDPQPTTKTSVKRPYTHAQIQIKQ 270

Query:   417 GADG 420
             G DG
Sbjct:   271 GQDG 274

GO:0033261 "regulation of S phase" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|E2RA52 CDC7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 199 (75.1 bits), Expect = 6.9e-29, Sum P(3) = 6.9e-29
 Identities = 64/244 (26%), Positives = 114/244 (46%)

Query:   182 KATGNHNDDQTNAKVLPNFES-FIVEEEEGSGGYGTVYRARRK-NDGTVVAIKCPHANAS 239
             K  G   D +   + +P   + F ++++ G G + +VY A  +   G    I   H   +
Sbjct:    37 KLPGVKKDIEKLYEAVPQLGNLFKIKDKIGEGTFSSVYLATAQLRVGPEEKIALKHLIPT 96

Query:   240 KH--YVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQ 297
              H   ++ EL+ L   GG++ ++  + CF+  D     + +++H+    +   +   +++
Sbjct:    97 SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVR 156

Query:   298 WYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG 357
              Y + LF+AL  +H+ GIVHRDVKP NFLF+ +  K  L+DF LA     G+ +   +  
Sbjct:   157 EYMFNLFKALKRIHQFGIVHRDVKPSNFLFNRRLKKYALVDFGLAQ----GT-HDTKIEL 211

Query:   358 TKYVPPVNGRKVPSA-KSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQ 416
              K+V     ++  S  KS V             PK+L ++   +T+V     +      Q
Sbjct:   212 LKFVQSEAQQESCSQNKSHVITGNKISLSGPAAPKELDQQPTMKTSVKRPYTNAQTQIKQ 271

Query:   417 GADG 420
             G DG
Sbjct:   272 GKDG 275

GO:0033261 "regulation of S phase" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|O00311 CDC7 "Cell division cycle 7-related protein kinase" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 2.5e-28, Sum P(3) = 2.5e-28
 Identities = 62/243 (25%), Positives = 113/243 (46%)

Query:   182 KATGNHNDDQTNAKVLPNFES-FIVEEEEGSGGYGTVYRARRKND-GTVVAIKCPHANAS 239
             K  G   D +   + +P   + F +E++ G G + +VY A  +   G    I   H   +
Sbjct:    36 KLAGVKKDIEKLYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT 95

Query:   240 KH--YVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQ 297
              H   ++ EL+ L   GG++ ++  + CF+  D     + +++H+    +   +   +++
Sbjct:    96 SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVR 155

Query:   298 WYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG 357
              Y   LF+AL  +H+ GIVHRDVKP NFL++ +  K  L+DF LA     G+ +   +  
Sbjct:   156 EYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQ----GT-HDTKIEL 210

Query:   358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQG 417
              K+V     ++  S      +  +    S   PK+L ++   + +V     +  I   QG
Sbjct:   211 LKFVQSEAQQERCSQNKSHIITGNKIPLSGPVPKELDQQSTTKASVKRPYTNAQIQIKQG 270

Query:   418 ADG 420
              DG
Sbjct:   271 KDG 273

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0033261 "regulation of S phase" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016301 "kinase activity" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

DICTYBASE|DDB_G0292152 cdc7 "CDC7 family protein kinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 224 (83.9 bits), Expect = 6.6e-27, Sum P(3) = 6.6e-27
 Identities = 52/151 (34%), Positives = 84/151 (55%)

Query:   540 LGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ- 598
             L N  + +  P AGT+GFRAPEVL +   Q   +DIWS GV LL ++ GR PFF  P+  
Sbjct:   903 LRNDPKPQPAPRAGTRGFRAPEVLLKYNKQTTAIDIWSVGVILLCMISGRYPFFISPDDM 962

Query:   599 -NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDF-LEV 656
              ++ +I  + G++ + ++A L  ++ S       + S+PP    +  + +        + 
Sbjct:   963 TSLAEIVSIIGTKKIVDIAHLLEKKISI------SHSIPPTPWRDLSRRLRSESSCDKQD 1016

Query:   657 IPSSLFDLVDKCLTVNPRLRISAEDALKHEF 687
             +P  L+DL+++CL  NP  RI+A +AL H F
Sbjct:  1017 VPVELYDLLERCLDPNPLTRITASEALLHPF 1047

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NB13 CDC7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 188 (71.2 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
 Identities = 53/182 (29%), Positives = 94/182 (51%)

Query:   166 EKKQGKRDQISRIMALKATGNHNDDQTNAKVLPNFES-FIVEEEEGSGGYGTVYRARRK- 223
             E    K  Q S++ A    G   D +   + +P   + F ++E+ G G + +VY A  + 
Sbjct:    27 EDTSRKHMQSSKLSA----GIKKDIEKLYEAVPQLVNVFKIKEKIGEGTFSSVYLATAQL 82

Query:   224 NDGTVVAIKCPHANASKH--YVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH 281
               G    +   H   + H   ++ EL+ L   GG++ ++  + CF+  D    V+ +++H
Sbjct:    83 QTGCEEKMALKHLIPTSHPLRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIVMPYLEH 142

Query:   282 DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGY-LIDFN 340
             +    +   +   +++ Y + LF+AL  +H  GIVHRDVKP NFL++ + +K Y L+DF 
Sbjct:   143 ESFLDILNSLSFEEVKEYMFNLFKALRRIHHFGIVHRDVKPSNFLYN-RRLKQYALVDFG 201

Query:   341 LA 342
             LA
Sbjct:   202 LA 203

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0033261 "regulation of S phase" evidence=IEA

ZFIN|ZDB-GENE-041114-113 cdc7 "cell division cycle 7 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 174 (66.3 bits), Expect = 1.3e-26, Sum P(4) = 1.3e-26
 Identities = 41/106 (38%), Positives = 63/106 (59%)

Query:   544 KQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIK 601
             ++++  P AGT GFRAPEVL +  +QG  +D+WSAGV LL L+ GR PFF   D    + 
Sbjct:   359 RKQQVAPRAGTPGFRAPEVLTKCPNQGTAIDMWSAGVILLSLLSGRYPFFKANDDLIALT 418

Query:   602 DIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLI 647
              I  +RGS++  E AK      +F + +  ++ LP ++L   C+ +
Sbjct:   419 QIMTIRGSKETIEAAK------TFGKSIVCSRELPRLDLRILCETL 458

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0032677 CG5790 [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 2.6e-26, Sum P(3) = 2.6e-26
 Identities = 61/227 (26%), Positives = 104/227 (45%)

Query:   142 HKDGIDPKGPKLQASRHNKAFDAKEKKQGKRDQISRIMALKATGNHNDDQTNAKV---LP 198
             H+  +  + PK  A  + K    K  +Q    ++S I A        +++   ++   +P
Sbjct:    82 HQQLLLQQAPKCTADLNEKL--VKINRQNANKELSTIQAKDMQSVDKNEEALKELQESIP 139

Query:   199 NFES-FIVEEEEGSGGYGTVYRARRKNDGTVV-------AIKCPHANASKH--YVSNELR 248
                  F V    GSG + TV     + +  +V       AIK  H N + H   +  EL 
Sbjct:   140 EINKIFDVHCRIGSGTFSTVLLGTLQRERGLVETQRRRFAIK--HHNPTNHPERILRELE 197

Query:   249 MLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALA 308
              + R GG   +I    C +  D+  F++ ++ HDR   + + ++  +++ Y   L  AL 
Sbjct:   198 CMYRIGGVENVIGINCCIRYNDNVAFIMPYMTHDRFHDIYRSLNFPEIRDYLRNLLIALR 257

Query:   309 SLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM-VGFDGSFNQAT 354
              +HK  ++HRDVKP N L++ +  K  L DF LA  +  DGS  Q++
Sbjct:   258 HVHKFNVIHRDVKPSNILYNRRTGKFLLCDFGLAQRIADDGSVVQSS 304

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=NAS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

UNIPROTKB|J3KQS2 CDC7 "Cell division cycle 7-related protein kinase" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 5.7e-26, Sum P(3) = 5.7e-26
 Identities = 55/213 (25%), Positives = 100/213 (46%)

Query:   211 SGGYGTVYRARRKND-GTVVAIKCPHANASKH--YVSNELRMLERFGGKNFIIKYEGCFK 267
             +G + +VY A  +   G    I   H   + H   ++ EL+ L   GG++ ++  + CF+
Sbjct:    38 AGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFR 97

Query:   268 CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLF 327
               D     + +++H+    +   +   +++ Y   LF+AL  +H+ GIVHRDVKP NFL+
Sbjct:    98 KNDHVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLY 157

Query:   328 SCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSN 387
             + +  K  L+DF LA     G+ +   +   K+V     ++  S      +  +    S 
Sbjct:   158 NRRLKKYALVDFGLAQ----GT-HDTKIELLKFVQSEAQQERCSQNKSHIITGNKIPLSG 212

Query:   388 LEPKDLKRKVVRQTNVHNDLGSRNIINSQGADG 420
               PK+L ++   + +V     +  I   QG DG
Sbjct:   213 PVPKELDQQSTTKASVKRPYTNAQIQIKQGKDG 245

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|D4A8S5 Cdc7 "Protein Cdc7" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 9.8e-25, Sum P(2) = 9.8e-25
 Identities = 64/245 (26%), Positives = 116/245 (47%)

Query:   180 ALKATGNHNDDQTNAKVLPNFES-FIVEEEEGSGGYGTVYRARRK-NDGTVVAIKCPHAN 237
             ++K +G   D +   + +P   S F ++++ G G + +VY A  +  +G    I   H  
Sbjct:    28 SVKLSGIKRDIEELCEAVPQLVSVFKIKDKIGEGTFSSVYLATAQLQEGREEKIALKHLI 87

Query:   238 ASKHYV--SNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQ 295
              + H V  + EL+ L   GG++ ++  + CF+  D     + +++H+    +   +   +
Sbjct:    88 PTSHPVRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQE 147

Query:   296 LQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATL 355
             ++ Y + LF AL  +H+ GIVHRDVKP NFL++ +  K  L+DF LA     G+     +
Sbjct:   148 VREYMFNLFVALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQ----GT-RDTKI 202

Query:   356 PGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINS 415
                K+V     ++  S      V       S   PK++ + +  +T+V     +  I   
Sbjct:   203 ELLKFVQSEAQQEDCSRNKCHGVIGHKGPLSRPAPKNVDQHITTKTSVKRSYANAQIHIK 262

Query:   416 QGADG 420
             QG DG
Sbjct:   263 QGKDG 267

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0033261 "regulation of S phase" evidence=IEA

GO:0051301 "cell division" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.737
3rd Layer	2.7.11	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	728
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-29
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	5e-26
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	5e-25
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-22
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-20
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-20
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-19
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-17
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	2e-17
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	6e-17
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	4e-16
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-16
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-15
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-15
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	1e-15
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	4e-15
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	4e-14
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	5e-14
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	6e-14
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	9e-14
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-13
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	3e-13
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	4e-13
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	5e-13
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	9e-13
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	1e-12
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-12
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	2e-12
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-12
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	4e-12
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	6e-12
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	9e-12
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	9e-12
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-11
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	3e-11
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	3e-11
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	4e-11
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	4e-11
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	6e-11
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	7e-11
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	7e-11
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	8e-11
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-10
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	1e-10
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	1e-10
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	1e-10
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-10
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	2e-10
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-10
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	4e-10
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	5e-10
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	8e-10
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	8e-10
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	8e-10
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	9e-10
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	1e-09
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	1e-09
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-09
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	1e-09
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	2e-09
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	2e-09
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	2e-09
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	3e-09
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	3e-09
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	4e-09
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	4e-09
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	4e-09
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	5e-09
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	5e-09
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	6e-09
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	7e-09
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	8e-09
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	8e-09
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	9e-09
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	9e-09
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	1e-08
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-08
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	2e-08
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	2e-08
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-08
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	2e-08
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	3e-08
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	4e-08
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	4e-08
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	4e-08
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	5e-08
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	6e-08
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	7e-08
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	7e-08
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	8e-08
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	8e-08
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	1e-07
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	1e-07
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	1e-07
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	1e-07
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	1e-07
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	1e-07
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	1e-07
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	1e-07
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-07
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	2e-07
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	2e-07
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-07
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	3e-07
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	3e-07
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	3e-07
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	3e-07
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	3e-07
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	3e-07
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	4e-07
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	4e-07
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	4e-07
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	4e-07
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	5e-07
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	5e-07
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	5e-07
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	6e-07
PLN03225	566	PLN03225, PLN03225, Serine/threonine-protein kinas	6e-07
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	1e-06
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	1e-06
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	1e-06
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	1e-06
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	1e-06
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	1e-06
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	1e-06
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	1e-06
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	2e-06
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	2e-06
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	2e-06
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	2e-06
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	2e-06
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	2e-06
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	2e-06
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	3e-06
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	3e-06
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	3e-06
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	4e-06
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	4e-06
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	4e-06
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	5e-06
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	5e-06
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	7e-06
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	7e-06
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	8e-06
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	8e-06
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	9e-06
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	1e-05
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	1e-05
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	1e-05
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	1e-05
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	1e-05
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	1e-05
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	1e-05
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	1e-05
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	1e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	2e-05
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	2e-05
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	3e-05
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	3e-05
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	3e-05
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	4e-05
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	4e-05
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	4e-05
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	4e-05
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	4e-05
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	5e-05
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	5e-05
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	6e-05
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	6e-05
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	6e-05
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	7e-05
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	7e-05
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	7e-05
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	8e-05
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	9e-05
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	9e-05
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	9e-05
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	9e-05
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	1e-04
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	1e-04
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	1e-04
pfam01636	238	pfam01636, APH, Phosphotransferase enzyme family	1e-04
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	1e-04
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-04
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	1e-04
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	1e-04
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	1e-04
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	1e-04
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	1e-04
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	1e-04
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	1e-04
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	2e-04
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	2e-04
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	2e-04
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	2e-04
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	2e-04
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	2e-04
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	2e-04
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	2e-04
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	3e-04
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	3e-04
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	3e-04
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	3e-04
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	4e-04
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	4e-04
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	4e-04
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	4e-04
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	4e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	4e-04
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	5e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	5e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	5e-04
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	5e-04
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	5e-04
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	7e-04
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	7e-04
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	7e-04
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	8e-04
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	8e-04
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	0.001
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	0.001
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	0.001
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	0.001
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	0.001
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	0.001
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	0.001
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	0.001
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	0.001
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	0.001
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	0.002
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	0.002
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	0.002
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	0.002
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	0.002
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	0.002
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	0.002
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	0.002
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	0.002
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	0.003
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	0.003
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.003
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	0.003
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	0.003
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	0.003
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	0.003
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	0.003
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	0.003
cd08226	328	cd08226, PK_STRAD_beta, Pseudokinase domain of STE	0.003
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	0.004
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	0.004
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	0.004
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	0.004
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  115 bits (290), Expect = 3e-29
 Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 9/162 (5%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK---CPHANASKHYVSNELRMLERFGGKNFIIKYEGCF 266
           G GG+GTVY AR K  G  VAIK      +++    +  E+ +L++    N I+K  G F
Sbjct: 2   GEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPN-IVKLYGVF 60

Query: 267 KCGDSDCFVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKP 322
           +  +    V+E+ +     D  +  + ++   ++      +   L  LH  GI+HRD+KP
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKP 120

Query: 323 GNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
            N L      K  L DF L+ +         T+ GT  Y+ P
Sbjct: 121 ENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAP 162

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  107 bits (269), Expect = 5e-26
 Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 12/169 (7%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVSNELRMLERFGGKNFI 259
           + + E+ G G +G VY AR K  G +VAIK          +  +  E+++L++    N I
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPN-I 59

Query: 260 IKYEGCFKCGDSDCFVLEHVKH-DRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIV 316
           ++    F+  D    V+E+ +  D  ++LKK   +   + ++Y   +  AL  LH +GIV
Sbjct: 60  VRLYDVFEDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQILSALEYLHSKGIV 119

Query: 317 HRDVKPGNFLF-SCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
           HRD+KP N L      VK  L DF LA    D      T  GT  Y+ P
Sbjct: 120 HRDLKPENILLDEDGHVK--LADFGLARQ-LDPGEKLTTFVGTPEYMAP 165

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  104 bits (262), Expect = 5e-25
 Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 12/170 (7%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVS-NELRMLERFGGKNF 258
           + +  + GSG +GTVY+A+ K  G +VA+K        + K   +  E+R+L R    N 
Sbjct: 1   YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPN- 59

Query: 259 IIKYEGCFKCGDSDCFVLEHVKH---DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGI 315
           I++    F+  D    V+E+ +             +   + +     + R L  LH  GI
Sbjct: 60  IVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLHSNGI 119

Query: 316 VHRDVKPGNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
           +HRD+KP N L      VK  + DF LA      S +  T  GT  Y+ P
Sbjct: 120 IHRDLKPENILLDENGVVK--IADFGLAKKLLKSSSSLTTFVGTPWYMAP 167

Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 97.3 bits (243), Expect = 1e-22
 Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 13/166 (7%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--VSNELRMLERFGGKNFII 260
           F + E+ G GG+G VY+AR K  G  VAIK     + +    + NE+++L++    N I+
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPN-IV 60

Query: 261 KYEGCFKCGDSDCFVLEH-----VKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGI 315
           KY G +   D    V+E      +K D  +   + +  SQ+ +    L + L  LH  GI
Sbjct: 61  KYYGSYLKKDELWIVMEFCSGGSLK-DLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGI 119

Query: 316 VHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
           +HRD+K  N L +    VK  LIDF L+    D      T+ GT Y
Sbjct: 120 IHRDIKAANILLTSDGEVK--LIDFGLSAQLSDTKARN-TMVGTPY 162

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 91.9 bits (229), Expect = 1e-20
 Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 35/137 (25%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APEVL      GPK+D+WS GV L  L+ G+ PF G+   +   + +      
Sbjct: 159 VGTPWYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRRILGPP 218

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
           L                          + P+W                   DL+ KCL  
Sbjct: 219 L------------------------EFDEPKWSS-----------GSEEAKDLIKKCLNK 243

Query: 672 NPRLRISAEDALKHEFF 688
           +P  R +AE+ L+H +F
Sbjct: 244 DPSKRPTAEEILQHPWF 260

Length = 260

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 92.3 bits (230), Expect = 1e-20
 Identities = 50/189 (26%), Positives = 75/189 (39%), Gaps = 23/189 (12%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK---------HYVSNELRMLERF 253
           F   +  G G + TV  A+ K      AIK       K          YV  E  +L R 
Sbjct: 3   FKFGKIIGEGSFSTVVLAKEKETNKEYAIKI----LDKRQLIKEKKVKYVKIEKEVLTRL 58

Query: 254 GGKNFIIKYEGCFKCGDSDC--FVLEHVKH-DRPEVLKK--EIDLSQLQWYGYCLFRALA 308
            G   IIK    F+  D +   FVLE+  + +  + ++K   +D    ++Y   +  AL 
Sbjct: 59  NGHPGIIKLYYTFQ--DEENLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALE 116

Query: 309 SLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGR 367
            LH +GI+HRD+KP N L      +K  + DF  A V    S  ++       +     +
Sbjct: 117 YLHSKGIIHRDLKPENILLDKDMHIK--ITDFGTAKVLDPNSSPESNKGDATNIDSQIEK 174

Query: 368 KVPSAKSLV 376
                 S V
Sbjct: 175 NRRRFASFV 183

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 88.4 bits (220), Expect = 2e-19
 Identities = 38/138 (27%), Positives = 52/138 (37%), Gaps = 39/138 (28%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
             GT  + APEVL    + G  +DIWS GV L  L+ G+ PF GD    + ++ K  G  
Sbjct: 156 FVGTPEYMAPEVLLGKGY-GKAVDIWSLGVILYELLTGKPPFPGD--DQLLELFKKIGKP 212

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                                                   P     I     DL+ K L 
Sbjct: 213 KPPF------------------------------------PPPEWDISPEAKDLIRKLLV 236

Query: 671 VNPRLRISAEDALKHEFF 688
            +P  R++AE+AL+H FF
Sbjct: 237 KDPEKRLTAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 85.2 bits (209), Expect = 1e-17
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 8/149 (5%)

Query: 202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH--YVSNELRMLERFGGKNFI 259
           S+ +  + G G +G VY AR +    +  +     + SK       E+++L        I
Sbjct: 1   SYRILRKLGEGSFGEVYLARDRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNI 60

Query: 260 IKYEGCFKCGDSDCFVLEHVK-HDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQ 313
           +K    F+   S   V+E+V      ++LKK      +  S+  +    +  AL  LH +
Sbjct: 61  VKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK 120

Query: 314 GIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           GI+HRD+KP N L         LIDF LA
Sbjct: 121 GIIHRDIKPENILLDRDGRVVKLIDFGLA 149

Length = 384

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 82.9 bits (206), Expect = 2e-17
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 29/139 (20%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRG--SEDLW 613
           RAPE+L  S+H    +DIWS G  +   MI   P F GD E + +  I ++ G  +E+ W
Sbjct: 165 RAPEILLGSKHYSTAVDIWSVG-CIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESW 223

Query: 614 -EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS---SLFDLVDKCL 669
             V KL       P+             P++        D  +V+P       DL+ K L
Sbjct: 224 PGVTKL-------PDYKP--------TFPKF-----PPKDLEKVLPRLDPEGIDLLSKML 263

Query: 670 TVNPRLRISAEDALKHEFF 688
             NP  RISA++ALKH +F
Sbjct: 264 QYNPAKRISAKEALKHPYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 80.8 bits (200), Expect = 6e-17
 Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 33/177 (18%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC--PHANASKHY--VSNELRMLERFGGKNF 258
           + + +  G G +G VY+      G  VAIK         +    +  E+ +L+     N 
Sbjct: 2   YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN- 60

Query: 259 IIKYEGCFKCGDSDCFVLEHV----------KHDR-PEVLKKEIDLSQLQWYGYCLFRAL 307
           I+KY G  +  DS   +LE+           K    PE        S +  Y Y + + L
Sbjct: 61  IVKYIGSIETSDSLYIILEYAENGSLRQIIKKFGPFPE--------SLVAVYVYQVLQGL 112

Query: 308 ASLHKQGIVHRDVKPGNFLF----SCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
           A LH+QG++HRD+K  N L       K     L DF +A    D S + A++ GT Y
Sbjct: 113 AYLHEQGVIHRDIKAANILTTKDGVVK-----LADFGVATKLNDVSKDDASVVGTPY 164

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 79.1 bits (196), Expect = 4e-16
 Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 27/140 (19%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDLWEV 615
           +R PE+L  +   GP++D+WS G  L  L +G+  F G  E   ++ I +L GS      
Sbjct: 167 YRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPT---- 222

Query: 616 AKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPD-------FLEVIPSSLFDLVDKC 668
                 + ++P             LP +  L  K+P        F  +I  S  DL+DK 
Sbjct: 223 ------DENWPGV---------SKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKL 267

Query: 669 LTVNPRLRISAEDALKHEFF 688
           LT++P+ RISA+ AL+HE+F
Sbjct: 268 LTLDPKKRISADQALQHEYF 287

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 78.3 bits (194), Expect = 4e-16
 Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 27/171 (15%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPH-ANASKH----YVSNELRMLERFGGKN-FIIKYE 263
           G G +G V   R+K+ G + A+K        K     +   E  +L R    + FI+K  
Sbjct: 2   GKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRI--NHPFIVKLH 59

Query: 264 GCFKCGDSDCFVLEHV------KHDRPEVLKKEIDLSQ--LQWYGYCLFRALASLHKQGI 315
             F+  +    VLE+        H     L KE   S+   ++Y   +  AL  LH  GI
Sbjct: 60  YAFQTEEKLYLVLEYAPGGELFSH-----LSKEGRFSEERARFYAAEIVLALEYLHSLGI 114

Query: 316 VHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
           ++RD+KP N L       G+  L DF LA           T  GT  Y+ P
Sbjct: 115 IYRDLKPENILLD---ADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAP 162

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 16/160 (10%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK--CPHANASKHYVSN--ELRMLERFGGKNFIIKYEGC 265
           G G YG VY+AR K  G +VAIK       +     +   E+++L+     N IIK    
Sbjct: 8   GEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPN-IIKLLDV 66

Query: 266 FKCGDSDCFVLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKP 322
           F+       V E +  D  +++K   + +  S ++ Y Y L + LA  H  GI+HRD+KP
Sbjct: 67  FRHKGDLYLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKP 126

Query: 323 GNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTKYV 361
            N L + +  +K  L DF LA   F         P T YV
Sbjct: 127 ENLLINTEGVLK--LADFGLARS-FGSPVR----PYTHYV 159

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 77.2 bits (191), Expect = 1e-15
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 31/152 (20%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHA--NASKHYVS--NELRMLERFGGKNFIIKYEGC 265
           G G +G+VY A  K+ G ++A+K      ++ +   +   E+R+L      N I++Y G 
Sbjct: 9   GRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPN-IVRYYGS 67

Query: 266 FKCGDSDCF--VLEHV------------KHDRPEVLKKEIDLSQLQWYGYCLFRALASLH 311
            +  + +     LE+V                  V++K         Y   +   LA LH
Sbjct: 68  ERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRK---------YTRQILEGLAYLH 118

Query: 312 KQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             GIVHRD+K  N L      VK  L DF  A
Sbjct: 119 SNGIVHRDIKGANILVDSDGVVK--LADFGCA 148

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 10/166 (6%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII 260
           E F + E+ G G YG+VY+A  K  G VVAIK          +  E+ +L++      I+
Sbjct: 3   EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPY-IV 61

Query: 261 KYEGCFKCGDSDCF-VLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGI 315
           KY G +   ++D + V+E+       D  ++  K +   ++    Y   + L  LH    
Sbjct: 62  KYYGSYF-KNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKK 120

Query: 316 VHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
           +HRD+K GN L + +   K  L DF ++    D    + T+ GT +
Sbjct: 121 IHRDIKAGNILLNEEGQAK--LADFGVSGQLTDTMAKRNTVIGTPF 164

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 76.4 bits (189), Expect = 4e-15
 Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 31/152 (20%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN-----------ELRMLERFGGKNF 258
           G G YG VY+AR K  G +VA+K       K  + N           E+++L++    N 
Sbjct: 8   GEGTYGQVYKARNKKTGELVALK-------KIRMENEKEGFPITAIREIKLLQKLRHPNI 60

Query: 259 IIKYEGCFKCGDSDCF-VLEHVKHD------RPEVLKKEIDLSQLQWYGYCLFRALASLH 311
           +   E     G    + V E++ HD       PEV   +   SQ++ Y   L   L  LH
Sbjct: 61  VRLKEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEV---KFTESQIKCYMKQLLEGLQYLH 117

Query: 312 KQGIVHRDVKPGNFLFSCKAV-KGYLIDFNLA 342
             GI+HRD+K  N L +   V K  L DF LA
Sbjct: 118 SNGILHRDIKGSNILINNDGVLK--LADFGLA 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 73.7 bits (182), Expect = 4e-14
 Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 21/144 (14%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG--DPEQNIKDIAKLRGS-- 609
           T+ +RAPE+L  S      +DIWS G      ++ R P F   D    +  I ++ G+  
Sbjct: 169 TRWYRAPELLLSSSRYTKAIDIWSVGCIFAE-LLTRKPLFPGRDYIDQLNLIVEVLGTPS 227

Query: 610 -EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC 668
            EDL  +     R           KSLP        KL        E I     DL++K 
Sbjct: 228 EEDLKFITSEKARN--------YLKSLPKKPKKPLSKLFPGASP--EAI-----DLLEKM 272

Query: 669 LTVNPRLRISAEDALKHEFFAPCH 692
           L  +P+ RI+A++AL H + A  H
Sbjct: 273 LVFDPKKRITADEALAHPYLAQLH 296

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 73.3 bits (181), Expect = 5e-14
 Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 19/165 (11%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK-CPHANASKHY---VSNELRMLERFGGKNFIIKYEGC 265
           GSG YG V  A  K  G  VAIK   +          +  E+++L     +N II     
Sbjct: 9   GSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHEN-IIGLLDI 67

Query: 266 FKCGDSDCF-----VLEHVKHDRPEVLKKEIDLS--QLQWYGYCLFRALASLHKQGIVHR 318
            +    + F     V E ++ D  +V+K    L+   +Q++ Y + R L  LH   ++HR
Sbjct: 68  LRPPSPEDFNDVYIVTELMETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHR 127

Query: 319 DVKPGNFLF--SCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYV 361
           D+KP N L   +C  +K  + DF LA         +  L  T+YV
Sbjct: 128 DLKPSNILVNSNCD-LK--ICDFGLARGVDPDEDEKGFL--TEYV 167

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 72.7 bits (179), Expect = 6e-14
 Identities = 48/161 (29%), Positives = 61/161 (37%), Gaps = 32/161 (19%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNE--------------LRMLER 252
            E G G YGTVY+AR  N G  VA+K          V                 L+ LE 
Sbjct: 5   AEIGEGAYGTVYKARDLNTGRFVALKKVR-------VPLSEEGIPLSTLREIALLKQLES 57

Query: 253 FGGKNFIIKYEGCFKCGDSDCF----VLEHVKHDRPEVLKK----EIDLSQLQWYGYCLF 304
           F   N +   + C             V EHV  D    L K     +    ++     L 
Sbjct: 58  FEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLL 117

Query: 305 RALASLHKQGIVHRDVKPGNFLFSC-KAVKGYLIDFNLAMV 344
           R +  LH   IVHRD+KP N L +    VK  + DF LA +
Sbjct: 118 RGVDFLHSHRIVHRDLKPQNILVTSDGQVK--IADFGLARI 156

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 71.8 bits (177), Expect = 9e-14
 Identities = 55/173 (31%), Positives = 85/173 (49%), Gaps = 21/173 (12%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNF 258
           + + ++ G G +G VY  RRK+DG +  +K    +      +    NE+++L++    N 
Sbjct: 2   YEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPN- 60

Query: 259 IIKYEGCFKCGDSDCFVLEHVKH-DRPEVLKKEIDLSQ-------LQW-YGYCLFRALAS 309
           IIKY   F+     C V+E+    D  + +KK+    +       L W    CL  AL  
Sbjct: 61  IIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCL--ALKY 118

Query: 310 LHKQGIVHRDVKPGN-FLFSCKAVKGYLIDFNLAMVGFDGSFNQA-TLPGTKY 360
           LH + I+HRD+KP N FL S   VK  L DF ++ V    + + A T+ GT Y
Sbjct: 119 LHSRKILHRDIKPQNIFLTSNGLVK--LGDFGISKV-LSSTVDLAKTVVGTPY 168

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 72.2 bits (178), Expect = 1e-13
 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 30/149 (20%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF---GDPEQNIKDIAKLRG-- 608
           T+ +RAPE+LF ++H G  +D+WS G     L++ R PF     D +Q +  I +  G  
Sbjct: 165 TRWYRAPELLFGARHYGVGVDMWSVGCIFAELLL-RVPFLPGDSDIDQ-LGKIFEALGTP 222

Query: 609 SEDLWEVAKLHNRESSFPEDLYAA-KSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
           +E+ W         +S P   Y   K  PP  L +   +     D          DL+ +
Sbjct: 223 TEENWPGV------TSLP--DYVEFKPFPPTPLKQ---IFPAASD-------DALDLLQR 264

Query: 668 CLTVNPRLRISAEDALKHEFF----APCH 692
            LT+NP  RI+A  AL+H +F    AP  
Sbjct: 265 LLTLNPNKRITARQALEHPYFSNDPAPTP 293

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 9/140 (6%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK----CPHANASKHYVSNELRMLERFGGKNFIIKYEGC 265
           G G YG V + R K  G +VAIK           K     E+++L +   +N I+  +  
Sbjct: 10  GEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHEN-IVNLKEA 68

Query: 266 FKCGDSDCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKP 322
           F+       V E+V+    E+L+     +    ++ Y + L +A+A  H   I+HRD+KP
Sbjct: 69  FRRKGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKP 128

Query: 323 GNFLFSCKAVKGYLIDFNLA 342
            N L S ++    L DF  A
Sbjct: 129 ENILVS-ESGVLKLCDFGFA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 70.2 bits (173), Expect = 4e-13
 Identities = 46/154 (29%), Positives = 65/154 (42%), Gaps = 23/154 (14%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNE------LR---MLERF 253
           +   E+ G G YG VY+AR K  G +VA+K       +     E      LR   +L+  
Sbjct: 1   YEKLEKLGEGTYGVVYKARDKKTGEIVALK-----KIRLDNEEEGIPSTALREISLLKEL 55

Query: 254 GGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASL 310
              N I+K             V E+   D  + L K    +  + ++   Y L R LA  
Sbjct: 56  KHPN-IVKLLDVIHTERKLYLVFEYCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYC 114

Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYL-I-DFNLA 342
           H   I+HRD+KP N L +     G L + DF LA
Sbjct: 115 HSHRILHRDLKPQNILIN---RDGVLKLADFGLA 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 48/158 (30%), Positives = 68/158 (43%), Gaps = 31/158 (19%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGC 265
           E  G G YG VY+AR K  G +VAIK        +  +  E  +L ++     I  + G 
Sbjct: 12  EVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGA 71

Query: 266 FK------CGDSDCFVLEH---------VK--HDRPEVLKKEIDLSQLQWYGYCL---FR 305
           F         D    V+E          VK    + + LK+E       W  Y L    R
Sbjct: 72  FIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEE-------WIAYILRETLR 124

Query: 306 ALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLA 342
            LA LH+  ++HRD+K  N L +  A VK  L+DF ++
Sbjct: 125 GLAYLHENKVIHRDIKGQNILLTKNAEVK--LVDFGVS 160

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 69.2 bits (170), Expect = 9e-13
 Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 30/146 (20%)

Query: 550 PCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPE-QNIKDIAKLR 607
               T  +RAPEVL +S +  P +D+WS G  +   +  R P F G  E   +  I  + 
Sbjct: 165 SVVVTLWYRAPEVLLQSSYATP-VDMWSVGC-IFAELFRRRPLFRGTSEADQLDKIFDVI 222

Query: 608 G--SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS---SLF 662
           G  SE+ W            P ++    SLP  + P           F   +P       
Sbjct: 223 GLPSEEEW------------PRNV----SLPRSSFPS-----YTPRSFKSFVPEICEEGL 261

Query: 663 DLVDKCLTVNPRLRISAEDALKHEFF 688
           DL+ K LT NP  RISA +AL+H +F
Sbjct: 262 DLLKKMLTFNPHKRISAFEALQHPYF 287

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 68.8 bits (169), Expect = 1e-12
 Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 18/136 (13%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDLWEV 615
           +RAPE+L  ++     +D+WS G     L+  +  F G  E + +  I KL G+      
Sbjct: 172 YRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPT---- 227

Query: 616 AKLHNRESSFPE--DLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL-FDLVDKCLTVN 672
                 E  +P   +L  AK       P   +L   R  F  +  S   FDL+++ LT +
Sbjct: 228 ------EKIWPGFSELPGAKKKTFTKYPY-NQL---RKKFPALSLSDNGFDLLNRLLTYD 277

Query: 673 PRLRISAEDALKHEFF 688
           P  RISAEDALKH +F
Sbjct: 278 PAKRISAEDALKHPYF 293

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 28/143 (19%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPE-QNIKDIAKLRGSED 611
           T+ +RAPE+L   +     +DIWS G  +   ++ R P F G  E   +  I +  G+ D
Sbjct: 161 TRWYRAPELLLGDKGYSTPVDIWSVG-CIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPD 219

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPP---INLPEWCKLITKRPDFLEVIP---SSLFDLV 665
                         PE      SL      + P+   +        ++ P       DL+
Sbjct: 220 --------------PEVWPKFTSLARNYKFSFPKKAGM-----PLPKLFPNASPQALDLL 260

Query: 666 DKCLTVNPRLRISAEDALKHEFF 688
            + L  +P  RI+AE AL H +F
Sbjct: 261 SQMLHYDPHKRITAEQALAHPYF 283

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 29/140 (20%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPE-QNIKDIAKLRGS--EDL 612
           +RAPE+L  S+     +DIWS G  +   M+ R P F GD E   +  I +  G+  ED+
Sbjct: 165 YRAPEILLGSRQYSTPVDIWSIG-CIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDV 223

Query: 613 W-EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS---SLFDLVDKC 668
           W  V  L + + +FP+               W      R D  +V+P+      DL+ K 
Sbjct: 224 WPGVTSLPDYKPTFPK---------------W-----ARQDLSKVVPNLDEDGLDLLSKM 263

Query: 669 LTVNPRLRISAEDALKHEFF 688
           L  +P  RISA+ AL+H +F
Sbjct: 264 LVYDPAKRISAKAALQHPYF 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 15/154 (9%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH----ANASKHYVSNELRMLERFGGKNF 258
           F V ++ G G YG+VY+ +R +D    A+K       +   +    NE+R+L      N 
Sbjct: 2   FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN- 60

Query: 259 IIKYEGCFKCGDSDCFVLEHVK-HDRPEVLKKEIDL-----SQLQW-YGYCLFRALASLH 311
           II Y+  F  G+  C V+E+    D  + + K          Q  W     L R L +LH
Sbjct: 61  IISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH 120

Query: 312 KQGIVHRDVKPGN-FLFSCKAVKGYLIDFNLAMV 344
           +Q I+HRD+K  N  L +   VK  + D  ++ V
Sbjct: 121 EQKILHRDLKSANILLVANDLVK--IGDLGISKV 152

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 20/144 (13%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKD----------IAKL 606
           +RAPE+L  ++H    +DIW+ G     L+     F G   +  K           I ++
Sbjct: 181 YRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEV 240

Query: 607 RG--SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL 664
            G  +E  W   K      +  +D +  K+ P  +L +W +   K         S  FDL
Sbjct: 241 LGTPTEKDWPDIKKMPEYDTLMKD-FKTKTYPSNSLAKWMEKHKKPD-------SQGFDL 292

Query: 665 VDKCLTVNPRLRISAEDALKHEFF 688
           + K L  +P  RI+AE+AL+H +F
Sbjct: 293 LRKLLEYDPTKRITAEEALEHPYF 316

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 66.5 bits (163), Expect = 6e-12
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 13/144 (9%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASK----HYVSNELRMLERFGGKNFIIKYEGC 265
           G G +G V++A+ +  G  VA+K       +    +    E++ L+       ++K    
Sbjct: 9   GEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPY-VVKLLDV 67

Query: 266 FKCGDSDCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKP 322
           F  G     V+E++  D  EVL+ E   +  +Q++ Y   L + +A +H  GI+HRD+KP
Sbjct: 68  FPHGSGFVLVMEYMPSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKP 127

Query: 323 GNFLFSCKAVKGYL--IDFNLAMV 344
            N L S     G L   DF LA +
Sbjct: 128 ANLLIS---ADGVLKIADFGLARL 148

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 66.9 bits (164), Expect = 9e-12
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 27/148 (18%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSED 611
            T+ +RAPE++    H    +DIWS G  +  L+ G+T F G D    +K I  L G+ D
Sbjct: 177 ATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPD 236

Query: 612 LWEVAKLHNRESSFPEDLYAAK----SLPPINLPEWCKLITKRPDFLEVIP--SSLF-DL 664
              + K+    S       +A+    SLP             + DF EV    + L  DL
Sbjct: 237 EELLQKI---SSE------SARNYIQSLPQ----------MPKKDFKEVFSGANPLAIDL 277

Query: 665 VDKCLTVNPRLRISAEDALKHEFFAPCH 692
           ++K L ++P  RI+A +AL H + A  H
Sbjct: 278 LEKMLVLDPDKRITAAEALAHPYLAEYH 305

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 66.6 bits (163), Expect = 9e-12
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 21/145 (14%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGSED 611
           T+ +RAPE+L         +D+WS G     L+ GR P F   D    +K I +L GS  
Sbjct: 171 TRWYRAPELLLNCSEYTTAIDVWSVGCIFAELL-GRKPLFPGKDYVHQLKLITELLGSPS 229

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS---LFDLVDKC 668
             ++  + N      +     +SLP           T R  F  + P +     DL++K 
Sbjct: 230 EEDLGFIRN-----EKARRYIRSLPY----------TPRQSFARLFPHANPLAIDLLEKM 274

Query: 669 LTVNPRLRISAEDALKHEFFAPCHE 693
           L  +P  RI+ E+AL H + A  H+
Sbjct: 275 LVFDPSKRITVEEALAHPYLASLHD 299

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 44/152 (28%)

Query: 539 LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF--FGDP 596
           L      +  G   GT  + APEV+   ++ G   DIWS G T++ +  G+ P+   G+P
Sbjct: 151 LGDIETGEGTGSVRGTPYWMAPEVIRGEEY-GRAADIWSLGCTVIEMATGKPPWSELGNP 209

Query: 597 EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEV 656
              +  I                            +   P I  PE              
Sbjct: 210 MAALYKIGS--------------------------SGEPPEI--PEH------------- 228

Query: 657 IPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
           +     D + KCL  +P+ R +A++ L+H F 
Sbjct: 229 LSEEAKDFLRKCLRRDPKKRPTADELLQHPFL 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 32/146 (21%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF---GDPEQNIKDIAKLRGS 609
            T+ +RAPE+L+ ++   P +D+W+ G     L+ G  P F    D EQ       L G+
Sbjct: 162 ATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGS-PLFPGENDIEQLAIVFRTL-GT 219

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLP---PINLPEWCKLITKRPDFLEVI----PSSLF 662
            +          E ++P       SLP    I  PE       +P  LE I         
Sbjct: 220 PN----------EETWPG----LTSLPDYNKITFPE------SKPIPLEEIFPDASPEAL 259

Query: 663 DLVDKCLTVNPRLRISAEDALKHEFF 688
           DL+   L  +P  R+SA +AL+H +F
Sbjct: 260 DLLKGLLVYDPSKRLSAAEALRHPYF 285

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 11/141 (7%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK----CPHANASKHYVSNELRMLERFGGKNFIIKYEGC 265
           G G YG V + + K  G +VAIK           K     E+RML++   +N +   E  
Sbjct: 10  GEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIE-V 68

Query: 266 FKCGDSDCFVLEHVKH---DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKP 322
           F+       V E V H   D  E     +D S+++ Y + + R +   H   I+HRD+KP
Sbjct: 69  FRRKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKP 128

Query: 323 GNFLFS-CKAVKGYLIDFNLA 342
            N L S    VK  L DF  A
Sbjct: 129 ENILVSQSGVVK--LCDFGFA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 19/144 (13%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDL 612
           T+ +RAPE++   Q    ++DIWSAG     ++ G+  F G D       I  L G+   
Sbjct: 168 TRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPD 227

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS---SLFDLVDKCL 669
            +V      E++    L   +SLP              P F E   +   S  DL++K L
Sbjct: 228 -DVINTICSENT----LRFVQSLPKRE---------PVP-FSEKFKNADPSAIDLLEKML 272

Query: 670 TVNPRLRISAEDALKHEFFAPCHE 693
             +P+ RISA +AL H + AP H+
Sbjct: 273 VFDPQKRISAAEALAHPYLAPYHD 296

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 23/137 (16%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPE-QNIKDIAKLRGS--EDL 612
           +RAPEVL  S      +DIWS G T+   M  + P F GD E   +  I ++ G+  ED+
Sbjct: 167 YRAPEVLLGSPRYSTPVDIWSIG-TIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDV 225

Query: 613 W-EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
           W  V  L + +++FP+               W K   +    ++ +     DL++K L  
Sbjct: 226 WPGVTSLPDYKNTFPK---------------WKKGSLR--SAVKNLDEDGLDLLEKMLIY 268

Query: 672 NPRLRISAEDALKHEFF 688
           +P  RISA+ AL H +F
Sbjct: 269 DPAKRISAKKALNHPYF 285

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 63.7 bits (156), Expect = 6e-11
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 18/145 (12%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-----NELRMLERFGGKNFIIKYEG 264
           G G +G+VY AR K  G +VAIK        +         E++ L +      I+K + 
Sbjct: 8   GDGTFGSVYLARNKETGELVAIK--KMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKE 65

Query: 265 CFKCGDSDC--FVLEHVKHDRPEVLK----KEIDLSQLQWYGYCLFRALASLHKQGIVHR 318
            F+  ++D   FV E+++ +  +++K    K    S ++   Y + + LA +HK G  HR
Sbjct: 66  VFR--ENDELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHR 123

Query: 319 DVKPGNFLFSCK-AVKGYLIDFNLA 342
           D+KP N L S    VK  + DF LA
Sbjct: 124 DLKPENLLVSGPEVVK--IADFGLA 146

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 63.4 bits (155), Expect = 7e-11
 Identities = 48/144 (33%), Positives = 67/144 (46%), Gaps = 14/144 (9%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK----CPHANASK--HYVS-NELRMLERFGGKNFIIKY 262
           G G Y  VY+AR K  G +VAIK         A    ++ +  E+++L+     N II  
Sbjct: 9   GEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPN-IIGL 67

Query: 263 EGCFKCGDSDCFVLEHVKHDRPEVLK-KEIDLSQLQWYGYCL--FRALASLHKQGIVHRD 319
              F    +   V E ++ D  +V+K K I L+      Y L   R L  LH   I+HRD
Sbjct: 68  LDVFGHKSNINLVFEFMETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRD 127

Query: 320 VKPGNFLFSCKA-VKGYLIDFNLA 342
           +KP N L +    +K  L DF LA
Sbjct: 128 LKPNNLLIASDGVLK--LADFGLA 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 20/137 (14%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRGS--EDL 612
           +R PE+L   +  GP +D+W AG  ++  M  R+P   G+ EQ+ +  I++L GS   ++
Sbjct: 189 YRPPELLLGERDYGPPIDMWGAGC-IMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEV 247

Query: 613 W-EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
           W  V KL         +L+       + LP+  K   K      V      DL+DK L +
Sbjct: 248 WPGVDKL---------ELFKK-----MELPQGQKRKVKERLKPYVKDPHALDLIDKLLVL 293

Query: 672 NPRLRISAEDALKHEFF 688
           +P  RI A+ AL H+FF
Sbjct: 294 DPAKRIDADTALNHDFF 310

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 64.0 bits (156), Expect = 8e-11
 Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 32/146 (21%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRG--SEDLW 613
           +RAPE+L  ++     +D+WS G     L+ G+  F G+ E   +  I +L G  +ED W
Sbjct: 199 YRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFELLGTPNEDNW 258

Query: 614 EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRP-DFLEVIP---SSLFDLVDKCL 669
             AK                      LP + +   ++P D   + P       DL+   L
Sbjct: 259 PQAK---------------------KLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLL 297

Query: 670 TVNPRLRISAEDALKHEFFA----PC 691
            +NP  RISA++ALKHE+F     PC
Sbjct: 298 KLNPLERISAKEALKHEYFKSDPLPC 323

Length = 335

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 63.6 bits (153), Expect = 1e-10
 Identities = 35/143 (24%), Positives = 50/143 (34%), Gaps = 31/143 (21%)

Query: 553 GTKGFRAPEVLFRSQHQ--GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
           GT G+ APEVL            DIWS G+TL  L+ G  PF G+   +         + 
Sbjct: 170 GTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSA--------TS 221

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              +       E   P                        P   E+I  +  DL+ K L 
Sbjct: 222 QTLK----IILELPTP-----------------SLASPLSPSNPELISKAASDLLKKLLA 260

Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
            +P+ R+S+   L H+  A    
Sbjct: 261 KDPKNRLSSSSDLSHDLLAHLKL 283

Length = 384

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 11/143 (7%)

Query: 212 GGYGTVYRARRKNDGTVVAIKC-PHANA-SKHYVSN---ELRMLERFGGKNFIIKYEGCF 266
           G +G+VY A++++ G   AIK    ++  +K+ V+N   E  ++   G   ++ K    F
Sbjct: 7   GAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSF 66

Query: 267 KCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQW---YGYCLFRALASLHKQGIVHRDVKPG 323
           +  D    V+E++       L K +      W   Y   +   +  LH++GI+HRD+KP 
Sbjct: 67  QSKDYLYLVMEYLNGGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPE 126

Query: 324 NFLFSCKA-VKGYLIDFNLAMVG 345
           N L      +K  L DF L+  G
Sbjct: 127 NLLIDQTGHLK--LTDFGLSRNG 147

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 14/147 (9%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC-PHANAS----KHYVSNELRMLERFGGKNFIIKYEG 264
             G YG V+ A++K+ G + AIK    A+         V  E  +L +     +++K   
Sbjct: 2   SKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQS-PYVVKLYY 60

Query: 265 CFKCGDSDCFVLEHVKH-DRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVK 321
            F+   +   V+E++   D   +L+    +D    + Y   +  AL  LH  GI+HRD+K
Sbjct: 61  SFQGKKNLYLVMEYLPGGDLASLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLK 120

Query: 322 PGNFLFSCKAVKGY--LIDFNLAMVGF 346
           P N L       G+  L DF L+ VG 
Sbjct: 121 PDNILID---SNGHLKLTDFGLSKVGL 144

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 62.9 bits (154), Expect = 1e-10
 Identities = 49/185 (26%), Positives = 73/185 (39%), Gaps = 40/185 (21%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH---------YVSNELRMLE 251
           + F   +  G+G +G V   R K  G   A+K      SK          +V NE R+L+
Sbjct: 1   DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKI----LSKAKIVKLKQVEHVLNEKRILQ 56

Query: 252 RFGGKNFIIKYEGCFKCGDSDCFVLEHV----------KHDRPEVLKKEIDLSQLQWYGY 301
                 F++   G F+   +   V+E+V          K  R             ++Y  
Sbjct: 57  SIRHP-FLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKSGRF-------PEPVARFYAA 108

Query: 302 CLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT- 358
            +  AL  LH   IV+RD+KP N L       GY  + DF  A      ++   TL GT 
Sbjct: 109 QVVLALEYLHSLDIVYRDLKPENLLLD---SDGYIKITDFGFAKRVKGRTY---TLCGTP 162

Query: 359 KYVPP 363
           +Y+ P
Sbjct: 163 EYLAP 167

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 210 GSGGYGTVYRARRK---NDGTVVAIKCPHANASKHYVS---NELRMLERFGGKNFIIKYE 263
           G G +G VY+ + K      T VA+K    +AS+        E R++++ G  N +++  
Sbjct: 4   GEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPN-VVRLL 62

Query: 264 GCFKCGDSDCFVLEHVKH------------DRPEVLKKEIDLSQLQWYGYCLFRALASLH 311
           G     +    VLE+++               P   K  + L  L  +   + + +  L 
Sbjct: 63  GVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA 122

Query: 312 KQGIVHRD 319
            +  VHRD
Sbjct: 123 SKKFVHRD 130

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 16/162 (9%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN---ELRMLE--RFGGKNFIIKYEG 264
           G G YG VYR +    G VVA+K  + +     VS+   E+ +L   R      I KY G
Sbjct: 10  GRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYG 69

Query: 265 CFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC------LFRALASLHKQGIVHR 318
            +  G     ++E+ +      L K   +++     Y       +  AL  +HK G++HR
Sbjct: 70  SYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEK----YISVIIREVLVALKYIHKVGVIHR 125

Query: 319 DVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
           D+K  N L +       L DF +A +    S  ++T  GT Y
Sbjct: 126 DIKAANILVTNTG-NVKLCDFGVAALLNQNSSKRSTFVGTPY 166

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 18/145 (12%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK-CPHA-----NASKHYVSNELRMLERFGGKNFIIKYE 263
           G G YG V++A  +    VVA+K    A     +A + +   E+  L+  G    I+K  
Sbjct: 16  GKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTF--REIMFLQELGDHPNIVKLL 73

Query: 264 GCFKC-GDSDCF-VLEHVKHDRPEVLKKEI--DLSQLQWYGYCLFRALASLHKQGIVHRD 319
              K   D D + V E+++ D   V++  I  D+   ++  Y L +AL  +H   ++HRD
Sbjct: 74  NVIKAENDKDIYLVFEYMETDLHAVIRANILEDV-HKRYIMYQLLKALKYIHSGNVIHRD 132

Query: 320 VKPGNFLFS--CKAVKGYLIDFNLA 342
           +KP N L +  C+ VK  L DF LA
Sbjct: 133 LKPSNILLNSDCR-VK--LADFGLA 154

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 61.5 bits (149), Expect = 4e-10
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 19/160 (11%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDL 612
           T+ +RAPEV+    H    +DIWS G  +  ++ G+  F G D    + +I K+ G+   
Sbjct: 178 TRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSK 237

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS---LFDLVDKCL 669
             V KL + ++         K LP            ++ DF  ++P++     ++++K L
Sbjct: 238 EFVQKLQSEDAK-----NYVKKLPRF----------RKKDFRSLLPNANPLAVNVLEKML 282

Query: 670 TVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDN 709
            ++   RI+A +AL H +F   H+   + +      S D 
Sbjct: 283 VLDAESRITAAEALAHPYFEEFHDPEDETEAPPYDDSFDE 322

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 60.3 bits (147), Expect = 5e-10
 Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 26/170 (15%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLER--FGGKN--------FI 259
           G GG+G V   + K+     A+KC      K ++       +   F  K         FI
Sbjct: 2   GVGGFGRVELVKVKSKNRTFALKC----VKKRHIVE--TGQQEHIFSEKEILEECNHPFI 55

Query: 260 IKYEGCFKCGDSDCFVLEHVK-HDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIV 316
           +K    FK       ++E+    +   +L+     D    ++Y  C+  A   LH +GI+
Sbjct: 56  VKLYRTFKDKKYIYMLMEYCLGGELWTILRDRGLFDEYTARFYIACVVLAFEYLHNRGII 115

Query: 317 HRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           +RD+KP N L       GY  L+DF  A     G     T  GT +YV P
Sbjct: 116 YRDLKPENLLLD---SNGYVKLVDFGFAKKLKSGQ-KTWTFCGTPEYVAP 161

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 60.6 bits (147), Expect = 8e-10
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 20/135 (14%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSE--DLW 613
           +R PE+L   +  GP +D+WS G  L  L   +  F  + E   ++ I++L GS    +W
Sbjct: 183 YRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVW 242

Query: 614 -EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            +V KL    +  P+  Y  +                R +F   IP+   DL+D  LT++
Sbjct: 243 PDVIKLPYFNTMKPKKQYRRRL---------------REEF-SFIPTPALDLLDHMLTLD 286

Query: 673 PRLRISAEDALKHEF 687
           P  R +AE+AL   +
Sbjct: 287 PSKRCTAEEALNSPW 301

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 34/174 (19%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY-------VSNELRMLERFGGKNFIIKY 262
           G G +G V   ++++   + A+K    N  K         V NE R+L+      F++  
Sbjct: 9   GKGAFGKVCIVQKRDTKKMFAMKY--MNKQKCVEKGSVRNVLNERRILQELN-HPFLVNL 65

Query: 263 EGCFKCGDSDCF-VLE---------HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHK 312
              F   + + + V++         H+        K +    Q++++   +  AL  LH 
Sbjct: 66  WYSF-QDEENMYLVVDLLLGGDLRYHLSQ------KVKFSEEQVKFWICEIVLALEYLHS 118

Query: 313 QGIVHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
           +GI+HRD+KP N L      +G+  + DFN+A      +   +T  GT  Y+ P
Sbjct: 119 KGIIHRDIKPDNILLD---EQGHVHITDFNIATKVTPDTLTTST-SGTPGYMAP 168

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 59.8 bits (145), Expect = 8e-10
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 11/167 (6%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIK---CPHANAS-KHYVSNELRMLERFGGKNF 258
           F +  + G G +G V++  RK D  V A+K       N   +    +E R+L +     +
Sbjct: 2   FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSS-Y 60

Query: 259 IIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYC-LFRALASLHKQ 313
           II+Y   F        V+E+ +    H   ++ +         W  +  +   LA LH +
Sbjct: 61  IIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK 120

Query: 314 GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
            I+HRD+K  N           + D  +A +  D +    T+ GT Y
Sbjct: 121 KILHRDIKSLNLFLD-AYDNVKIGDLGVAKLLSDNTNFANTIVGTPY 166

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 60.0 bits (145), Expect = 9e-10
 Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 27/141 (19%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD---PEQNIKDIAKLRGSEDLW 613
           +R P+VL  +      LDIW AG   + ++ G+  F G     EQ           E +W
Sbjct: 169 YRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQ----------LEKIW 218

Query: 614 EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVI------PSSLFDLVDK 667
            V  +        ED +   S  P   PEW       P  L V+      P    DL  +
Sbjct: 219 TVLGVPT------EDTWPGVSKLPNYKPEWFLPCK--PQQLRVVWKRLSRPPKAEDLASQ 270

Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L + P+ RISA+DAL H +F
Sbjct: 271 MLMMFPKDRISAQDALLHPYF 291

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 47/152 (30%)

Query: 540 LGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN 599
           L +   + +  C GT  + APEVL    + G  +D WS GV L  ++ G+ PF+ +  + 
Sbjct: 143 LSSEGSRTNTFC-GTPEYLAPEVLLGKGY-GKAVDWWSLGVLLYEMLTGKPPFYAEDRKE 200

Query: 600 IKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS 659
           I +                                          K++     F E +  
Sbjct: 201 IYE------------------------------------------KILKDPLRFPEFLSP 218

Query: 660 SLFDLVDKCLTVNPRLRI---SAEDALKHEFF 688
              DL+   L  +P  R+    AE+   H FF
Sbjct: 219 EARDLISGLLQKDPTKRLGSGGAEEIKAHPFF 250

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 25/138 (18%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRG--SEDLW 613
           +RAP+VL  S+     +DIWS G  +  ++ GR  F G + E  +  I ++ G  +E  W
Sbjct: 166 YRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTW 225

Query: 614 EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS---LFDLVDKCLT 670
                    S  PE  Y     P               D  ++ P +     DL+ + L 
Sbjct: 226 P------GISQLPE--YKPTF-PRY----------PPQDLQQLFPHADPLGIDLLHRLLQ 266

Query: 671 VNPRLRISAEDALKHEFF 688
           +NP LRISA DAL+H +F
Sbjct: 267 LNPELRISAHDALQHPWF 284

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 29/147 (19%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK----CPHANASKHYVSNELRMLERFGGKNFIIKYEGC 265
           G G +G VY A   + G ++A+K      +   +   +++E+++LE     N ++KY G 
Sbjct: 9   GGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPN-LVKYYGV 67

Query: 266 ---------FK--C-GDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQ 313
                    F   C G +   +LEH          + +D   ++ Y   L   LA LH  
Sbjct: 68  EVHREKVYIFMEYCSGGTLEELLEH---------GRILDEHVIRVYTLQLLEGLAYLHSH 118

Query: 314 GIVHRDVKPGN-FLFSCKAVKGYLIDF 339
           GIVHRD+KP N FL     +K  L DF
Sbjct: 119 GIVHRDIKPANIFLDHNGVIK--LGDF 143

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 47/137 (34%), Positives = 63/137 (45%), Gaps = 24/137 (17%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPE-QNIKDIAKLRG--SEDL 612
           +RAPEVL  S H    +DIWS G  +   M  + P F GD E Q +  I KL G  +E +
Sbjct: 177 YRAPEVLLGSTHYSTPVDIWSVGC-IFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQV 235

Query: 613 W-EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
           W  V+KL         D +      P +L              ++ P  L DL+ K L  
Sbjct: 236 WPGVSKL--------RDWHEFPQWKPQDLSR---------AVPDLSPEGL-DLLQKMLRY 277

Query: 672 NPRLRISAEDALKHEFF 688
           +P  RISA+ AL H +F
Sbjct: 278 DPAKRISAKAALTHPYF 294

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 22/181 (12%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHA------NASKHYVSNELRMLERFGGKNFIIKYE 263
           G G +G V  A+ K DG   A+K             KH ++    +L+      F++   
Sbjct: 4   GKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVK-HPFLVGLH 62

Query: 264 GCFKCGDSDCFVLEHVK------HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
             F+  D   FVL++V       H + E   +     + ++Y   +  AL  LH   I++
Sbjct: 63  YSFQTADKLYFVLDYVNGGELFFHLQRE---RSFPEPRARFYAAEIASALGYLHSLNIIY 119

Query: 318 RDVKPGNFLFSCKAVKGYLI--DFNLAMVGFDGSFNQATLPGT-KYVPPVNGRKVPSAKS 374
           RD+KP N L      +G+++  DF L   G + S   +T  GT +Y+ P   RK P  ++
Sbjct: 120 RDLKPENILLDS---QGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDRT 176

Query: 375 L 375
           +
Sbjct: 177 V 177

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 26/144 (18%)

Query: 550 PCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN----IKDIA 604
           P   T  +RAPEVL +S +  P +D+WS G  +   M  R P F G+ E +    I D+ 
Sbjct: 166 PVVVTLWYRAPEVLLQSTYATP-VDMWSVGC-IFAEMFRRKPLFCGNSEADQLGKIFDLI 223

Query: 605 KLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL 664
            L   ED W       R+ + P   ++ +   P+               +  I  S   L
Sbjct: 224 GLP-PEDDWP------RDVTLPRGAFSPRGPRPVQ------------SVVPEIEESGAQL 264

Query: 665 VDKCLTVNPRLRISAEDALKHEFF 688
           + + LT NP  RISA  AL+H FF
Sbjct: 265 LLEMLTFNPHKRISAFRALQHPFF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 25/147 (17%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKD----IAKLRGS 609
           T+ +RAPE++  S+     +DIWS G  L  ++  R P F  P ++       I  + G+
Sbjct: 172 TRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNR-PLF--PGKDYLHQLNLILGVLGT 228

Query: 610 ---EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD 666
              EDL  +  L  R        Y  KSLP      +   +     F    P +L DL+D
Sbjct: 229 PSQEDLNCIISLRARN-------YI-KSLP------FKPKVPWNKLFPNADPKAL-DLLD 273

Query: 667 KCLTVNPRLRISAEDALKHEFFAPCHE 693
           K LT NP  RI+ E+AL H +    H+
Sbjct: 274 KMLTFNPHKRITVEEALAHPYLEQYHD 300

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 58.7 bits (143), Expect = 3e-09
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDL 612
           T+ +RAPE+L  S      +D+WS G  L  +++G+  F G    N ++ I ++ G    
Sbjct: 175 TRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSA 234

Query: 613 WEVAKLHNRESSFPEDLYA-AKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
            ++  +    S F   +     S P   L E   L+ K  D  + +     DL+ K L  
Sbjct: 235 EDIESIK---SPFAATMLDSLPSRPRKPLDE---LLPKASD--DAL-----DLLKKLLVF 281

Query: 672 NPRLRISAEDALKHEFFAPCH 692
           NP  R++AE+AL+H + A  H
Sbjct: 282 NPNKRLTAEEALEHPYVAQFH 302

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 58.9 bits (142), Expect = 3e-09
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 23/147 (15%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSED 611
            T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+  
Sbjct: 179 ATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPG 238

Query: 612 LWEVAKLHNRE-----SSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD 666
              + K+ +        S  +       +P +N             F+   P ++ DL++
Sbjct: 239 AELLKKISSESARNYIQSLTQ-------MPKMNFANV---------FIGANPLAV-DLLE 281

Query: 667 KCLTVNPRLRISAEDALKHEFFAPCHE 693
           K L ++   RI+A  AL H +FA  H+
Sbjct: 282 KMLVLDSDKRITAAQALAHAYFAQYHD 308

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 58.1 bits (140), Expect = 4e-09
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 8/150 (5%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELR---MLERFGG 255
              S++  E+ G G Y TVY+   + +G +VA+K       +      +R   +L+    
Sbjct: 3   AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKH 62

Query: 256 KNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHK 312
            N ++ ++      ++  FV E++  D  + + +    +    ++ + + L R LA +H 
Sbjct: 63  ANIVLLHD-IIHTKETLTFVFEYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHG 121

Query: 313 QGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           Q I+HRD+KP N L S    +  L DF LA
Sbjct: 122 QHILHRDLKPQNLLISYLG-ELKLADFGLA 150

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 23/137 (16%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPE-QNIKDIAKLRGS--EDL 612
           +RAPE+L  S+H    +DIWS G  +   M+ + P F GD E   +  I ++ G+  E+ 
Sbjct: 169 YRAPEILLGSRHYSTPVDIWSVGC-IFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEET 227

Query: 613 WE-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
           W  V  L + +S+FP+        PP +L             +  +  +  DL+ K L +
Sbjct: 228 WPGVTSLPDYKSAFPK-------WPPKDLAT----------VVPTLEPAGVDLLSKMLRL 270

Query: 672 NPRLRISAEDALKHEFF 688
           +P  RI+A  AL+HE+F
Sbjct: 271 DPSKRITARAALEHEYF 287

Length = 294

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 57.6 bits (140), Expect = 4e-09
 Identities = 48/178 (26%), Positives = 71/178 (39%), Gaps = 32/178 (17%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPH----ANASKHYVSNELRMLERFGGKNFIIKY 262
           E  G G +GTV + RRK+DG ++  K           K  + +E+ +L      N I++Y
Sbjct: 6   ETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPN-IVRY 64

Query: 263 EGCFK-------------CGDSD-CFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALA 308
                             C   D   +++  K +R  + ++ I     Q     L  AL 
Sbjct: 65  YDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQ-----LLLALY 119

Query: 309 SLH-----KQGIVHRDVKPGN-FLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
             H        ++HRD+KP N FL +   VK  L DF LA +    S    T  GT Y
Sbjct: 120 ECHNRSDPGNTVLHRDLKPANIFLDANNNVK--LGDFGLAKILGHDSSFAKTYVGTPY 175

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 57.5 bits (140), Expect = 5e-09
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 21/148 (14%)

Query: 210 GSGGYGTVYRAR-RKNDGTV---VAIKCPHANASKHYVS---NELRMLERFGGKNFIIKY 262
           G G +G VY+ + +   G     VA+K    +AS+  +     E R++ +    N ++K 
Sbjct: 8   GEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPN-VVKL 66

Query: 263 EGCFKCGDSD--CFVLEHVKH-DRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIV 316
            G   C + +    V+E+++  D    L+K   ++ LS L  +   + R +  L  +  +
Sbjct: 67  LGV--CTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARGMEYLESKNFI 124

Query: 317 HRDVKPGNFLFSC-KAVKGYLI-DFNLA 342
           HRD+   N L      VK   I DF L+
Sbjct: 125 HRDLAARNCLVGENLVVK---ISDFGLS 149

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 19/148 (12%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYV-SNELR---MLERFGGKNFIIKY 262
           E+ G G YGTV++A+ +    +VA+K    +     V S+ LR   +L+    KN +  Y
Sbjct: 6   EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLY 65

Query: 263 EGCFKCGDSD-CFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQG 314
           +      D     V E+   D    LKK       +ID   ++ + + L + LA  H   
Sbjct: 66  DVLH--SDKKLTLVFEYCDQD----LKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHN 119

Query: 315 IVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           ++HRD+KP N L + K  +  L DF LA
Sbjct: 120 VLHRDLKPQNLLIN-KNGELKLADFGLA 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 43/139 (30%), Positives = 62/139 (44%), Gaps = 27/139 (19%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRG--SEDLW 613
           +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G   E +W
Sbjct: 166 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVW 225

Query: 614 E-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP---SSLFDLVDKCL 669
             V  L + + SF               P+W      R DF +V+P       DL+ + L
Sbjct: 226 PGVTSLPDYKPSF---------------PKW-----ARQDFSKVVPPLDEDGRDLLSQML 265

Query: 670 TVNPRLRISAEDALKHEFF 688
             +P  RISA+ AL H FF
Sbjct: 266 HYDPNKRISAKAALAHPFF 284

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 57.2 bits (139), Expect = 7e-09
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 17/141 (12%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCF 266
           G G  G VY+ R K  G + A+K  H +     +  +  EL+ L R     +++K  G F
Sbjct: 10  GQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTL-RSCESPYVVKCYGAF 68

Query: 267 KCGDSDCFVLEHVK----HDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQ-GIVHRD 319
                   VLE++      D  + + K  E  L+ +      + + L  LH +  I+HRD
Sbjct: 69  YKEGEISIVLEYMDGGSLADLLKKVGKIPEPVLAYI---ARQILKGLDYLHTKRHIIHRD 125

Query: 320 VKPGNFLFSCK-AVKGYLIDF 339
           +KP N L + K  VK  + DF
Sbjct: 126 IKPSNLLINSKGEVK--IADF 144

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 56.8 bits (138), Expect = 8e-09
 Identities = 34/139 (24%), Positives = 46/139 (33%), Gaps = 46/139 (33%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APEV+    +   K DIWS G+T + L  G+ P+                   
Sbjct: 158 VGTPYWMAPEVINGKPY-DYKADIWSLGITAIELAEGKPPY------------------- 197

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPE---WCKLITKRPDFLEVIPSSLFDLVDKC 668
                     E    + L+   +  P  L     W                   D + KC
Sbjct: 198 ---------SELPPMKALFKIATNGPPGLRNPEKWSD--------------EFKDFLKKC 234

Query: 669 LTVNPRLRISAEDALKHEF 687
           L  NP  R +AE  LKH F
Sbjct: 235 LQKNPEKRPTAEQLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 57.2 bits (139), Expect = 8e-09
 Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 45/144 (31%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APEV+ R  + GPK+DIWS G+  + +  G  P+  +P         LR    L
Sbjct: 178 GTPYWMAPEVIKRKDY-GPKVDIWSLGIMCIEMAEGEPPYLREP--------PLRA---L 225

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPE-WCKLITKRPDFLEVIPSSLF-DLVDKCLT 670
           +               L   K +PP+  PE W               S  F D ++KCL 
Sbjct: 226 F---------------LITTKGIPPLKNPEKW---------------SPEFKDFLNKCLV 255

Query: 671 VNPRLRISAEDALKHEFFA-PCHE 693
            +P  R SAE+ L+H F    C +
Sbjct: 256 KDPEKRPSAEELLQHPFLKKACPK 279

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 56.7 bits (137), Expect = 9e-09
 Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 14/144 (9%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK----CPHANASKHYVSN---ELRMLERFGGKNFIIKY 262
           GSG +G+VY     +DG   A+K           +  V     E+ +L +    N I++Y
Sbjct: 9   GSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPN-IVQY 67

Query: 263 EGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL---SQLQWYGYCLFRALASLHKQGIVHRD 319
            G  +  D+    LE V       L K+        ++ Y   +   L  LH +  VHRD
Sbjct: 68  LGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVHRD 127

Query: 320 VKPGNFLFSCK-AVKGYLIDFNLA 342
           +K  N L      VK  L DF +A
Sbjct: 128 IKGANILVDTNGVVK--LADFGMA 149

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 56.7 bits (138), Expect = 9e-09
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 210 GSGGYGTVYRARRKNDG----TVVAIKCPHANASKHYVS---NELRMLERFGGKNFIIKY 262
           G G +G VY+   K DG    T VA+K     AS+        E  ++++    N I++ 
Sbjct: 8   GEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPN-IVRL 66

Query: 263 EGCFKCGDSDCFVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHR 318
            G    G+    V E++      D      +++ L  L      + + +  L  +  VHR
Sbjct: 67  LGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLESKNFVHR 126

Query: 319 DV 320
           D+
Sbjct: 127 DL 128

Length = 258

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 38/147 (25%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS----NELRMLERFGGKNFIIKY 262
           E+ G G YG VY+AR KN G +VA+K       +  +      E+ +L+      +I++ 
Sbjct: 7   EKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRL 66

Query: 263 EGCFKCGDSDCFVLEHVKHDRPEV------------LKKEIDL-----------SQLQWY 299
                        +EHV+    +             LKK +D              ++ +
Sbjct: 67  -----------LDVEHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSF 115

Query: 300 GYCLFRALASLHKQGIVHRDVKPGNFL 326
            Y L + +A  HK G++HRD+KP N L
Sbjct: 116 MYQLLKGVAHCHKHGVMHRDLKPQNLL 142

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK-CPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKC 268
           G G  G VY+A  +  G  VAIK       +K  + NE+ +++     N I+ Y   +  
Sbjct: 28  GEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPN-IVDYYDSYLV 86

Query: 269 GDSDCFVLEHVKHDR---PEVL-KKEIDLSQLQWYGYC--LFRALASLHKQGIVHRDVKP 322
           GD    V+E++  D     +++ +  + +++ Q    C  + + L  LH Q ++HRD+K 
Sbjct: 87  GDELWVVMEYM--DGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKS 144

Query: 323 GNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
            N L S    VK  L DF  A         + ++ GT Y
Sbjct: 145 DNILLSKDGSVK--LADFGFAAQLTKEKSKRNSVVGTPY 181

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 14/143 (9%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK------CPHANASKHYVSNELRMLERFGGKNFIIKYE 263
           G GGYG V+ A++K+ G +VA+K          N  +H V  E  +L       +++K  
Sbjct: 10  GQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRH-VLTERDILTT-TKSEWLVKLL 67

Query: 264 GCFKCGDSDCFVLEHVKH-DRPEVLKKEIDLS--QLQWYGYCLFRALASLHKQGIVHRDV 320
             F+  +     +E+V   D   +L     LS    ++Y   +F A+ +LH+ G +HRD+
Sbjct: 68  YAFQDDEYLYLAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDL 127

Query: 321 KPGNFLFSCKA-VKGYLIDFNLA 342
           KP NFL      +K  L DF L+
Sbjct: 128 KPENFLIDASGHIK--LTDFGLS 148

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 19/144 (13%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDL 612
           T+ +RAPEV+    H    +DIWS G  +  ++ G+T F G D    +  I K+ G    
Sbjct: 177 TRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGP 236

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS---LFDLVDKCL 669
             V KL ++ +         KSLP             R DF  + P +     DL++K L
Sbjct: 237 EFVQKLEDKAAK-----SYIKSLPKY----------PRKDFSTLFPKASPQAVDLLEKML 281

Query: 670 TVNPRLRISAEDALKHEFFAPCHE 693
            ++   R++A +AL+H +F    +
Sbjct: 282 ELDVDKRLTATEALEHPYFDSFRD 305

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 22/149 (14%)

Query: 210 GSGGYGTVYRARRKNDGTV----VAIKCPHANASKHYVS---NELRMLERFGGKNFIIKY 262
           G G +G VY+   K  G      VA+K    +AS+  +     E R++ +    N I+K 
Sbjct: 8   GEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPN-IVKL 66

Query: 263 EGCFKCGDSD--CFVLEHVKH-DRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGI 315
            G   C + +    V+E++   D  + L+K    E+ LS L  +   + R +  L  +  
Sbjct: 67  LGV--CTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNF 124

Query: 316 VHRDVKPGNFLFSC-KAVKGYLI-DFNLA 342
           +HRD+   N L      VK   I DF L+
Sbjct: 125 IHRDLAARNCLVGENLVVK---ISDFGLS 150

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 48/146 (32%), Positives = 67/146 (45%), Gaps = 16/146 (10%)

Query: 208 EEGSGGYGTVYRARRKNDGTVVAIK-----CPHANASKHYVSNELRMLERFGGKNFIIKY 262
           E G G +G VY AR      VVAIK        +N     +  E+R L++    N  I+Y
Sbjct: 22  EIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPN-TIEY 80

Query: 263 EGCFKCGDSDCFVLEHV---KHDRPEVLKKEIDLSQLQWYGYCL--FRALASLHKQGIVH 317
           +GC+    +   V+E+      D  EV KK   L +++    C    + LA LH    +H
Sbjct: 81  KGCYLREHTAWLVMEYCLGSASDILEVHKKP--LQEVEIAAICHGALQGLAYLHSHERIH 138

Query: 318 RDVKPGNFLFSCKA-VKGYLIDFNLA 342
           RD+K GN L +    VK  L DF  A
Sbjct: 139 RDIKAGNILLTEPGTVK--LADFGSA 162

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 23/145 (15%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS-- 609
           T+ +RAPE+L         +D+WS G  +   M+GR   F   +    +K I  + GS  
Sbjct: 174 TRWYRAPELLLSLPEYTTAIDMWSVGC-IFAEMLGRRQLFPGKNYVHQLKLILSVLGSPS 232

Query: 610 -EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITK-RPDFLEVIPSSLFDLVDK 667
            E L  +     R+          ++LP      W K+  K  P+ L        DL+ +
Sbjct: 233 EEVLNRIGSDRVRKY--------IQNLPRKQPVPWSKIFPKASPEAL--------DLLSQ 276

Query: 668 CLTVNPRLRISAEDALKHEFFAPCH 692
            L  +P  RI+ E AL+H F A  H
Sbjct: 277 MLQFDPEERITVEQALQHPFLAQYH 301

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 55.4 bits (133), Expect = 4e-08
 Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 9/129 (6%)

Query: 208 EEGSGGYGTVYRARRKNDGTVVAIK-----CPHANASKHYVSNELRMLERFGGKNFIIKY 262
           E G G +G VY AR   +  VVAIK        +N     +  E+R L++    N  I+Y
Sbjct: 22  EIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN-TIQY 80

Query: 263 EGCFKCGDSDCFVLEHV---KHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRD 319
            GC+    +   V+E+      D  EV KK +   ++    +   + LA LH   ++HRD
Sbjct: 81  RGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRD 140

Query: 320 VKPGNFLFS 328
           VK GN L S
Sbjct: 141 VKAGNILLS 149

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 17/136 (12%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG--DPEQNIKDIAKLRG--SEDL 612
           +R P+VL  S      LD+W  G     +  GR  F G  D E  +  I ++ G  +E+ 
Sbjct: 169 YRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEET 228

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
           W         SS PE  +   S P            +    L+ IP    +L  K L   
Sbjct: 229 WPGV------SSNPE--FKPYSFPFYPPRPLINHAPR----LDRIPHG-EELALKFLQYE 275

Query: 673 PRLRISAEDALKHEFF 688
           P+ RISA +A+KH +F
Sbjct: 276 PKKRISAAEAMKHPYF 291

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 19/147 (12%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK------CPHANASKHYVSNELRMLERFG 254
            +F +E++ G G +  VY+A    DG VVA+K         A A +  +  E+ +L++  
Sbjct: 2   GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCL-KEIDLLKQLD 60

Query: 255 GKNFIIKYEGCFKCGDSDCFVLE---------HVKHDRPEVLKKEIDLSQLQWYGYCLFR 305
             N +IKY   F   +    VLE          +KH + +  K+ I    +  Y   L  
Sbjct: 61  HPN-VIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQ--KRLIPERTIWKYFVQLCS 117

Query: 306 ALASLHKQGIVHRDVKPGNFLFSCKAV 332
           AL  +H + I+HRD+KP N   +   V
Sbjct: 118 ALEHMHSKRIMHRDIKPANVFITATGV 144

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 50/157 (31%), Positives = 72/157 (45%), Gaps = 23/157 (14%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           NF+     E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 1   NFQKV---EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 57

Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKK--------EIDLSQLQWYGYCLFRA 306
             N I+K        +    V E +  D    LKK         I L  ++ Y + L + 
Sbjct: 58  HPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASPLSGIPLPLIKSYLFQLLQG 112

Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 113 LAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 54.6 bits (131), Expect = 6e-08
 Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK----CPHANASKHYVSNELRMLERFGGKNFIIKYEGC 265
           G G YG V + R K    +VAIK           K     EL+ML     +N I++ +  
Sbjct: 10  GEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQEN-IVELKEA 68

Query: 266 FKCGDSDCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKP 322
           F+       V E+V+ +  E+L++    +   +++ Y Y L +A+   HK  IVHRD+KP
Sbjct: 69  FRRRGKLYLVFEYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKP 128

Query: 323 GNFLFSCKAVKGYLIDFNLA 342
            N L S   V   L DF  A
Sbjct: 129 ENLLISHNDVLK-LCDFGFA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-CPHA-----NASKHYVSNELRMLERFG 254
             +   E  GSG YG V  A     G  VAIK  PHA      A +     EL++L  F 
Sbjct: 5   SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTL--RELKILRHFK 62

Query: 255 GKNFIIKYEGCFKCGDSDC----FVLEHVKHDRPEVLKKEIDLSQ--LQWYGYCLFRALA 308
             N II      +   +D      V++ ++ D   ++  +  L++  ++++ Y L R L 
Sbjct: 63  HDN-IIAIRDILRPPGADFKDVYVVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLK 121

Query: 309 SLHKQGIVHRDVKPGNFL 326
            +H   ++HRD+KP N L
Sbjct: 122 YIHSANVIHRDLKPSNLL 139

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 54.6 bits (131), Expect = 7e-08
 Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 16/173 (9%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEG 264
           G G +G V  A+RK+DG+  A+K            ++++  E  +L +     F++    
Sbjct: 4   GKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHY 63

Query: 265 CFKCGDSDCFVLEHVK------HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHR 318
            F+  +   FVL++V       H + E    E    + ++Y   +  A+  LH   I++R
Sbjct: 64  SFQTAEKLYFVLDYVNGGELFFHLQRERCFLE---PRARFYAAEVASAIGYLHSLNIIYR 120

Query: 319 DVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPPVNGRKVP 370
           D+KP N L   +     L DF L   G +     +T  GT +Y+ P   RK P
Sbjct: 121 DLKPENILLDSQG-HVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEP 172

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 44/147 (29%)

Query: 546 KKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           K+D    GT  + APEV+    H    +D WS G  L   ++G  PF G+  + I     
Sbjct: 156 KEDKRIVGTPDYIAPEVILGQGH-SKTVDWWSLGCILYEFLVGIPPFHGETPEEI----- 209

Query: 606 LRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLV 665
                       + N +  +PED                            +     DL+
Sbjct: 210 ---------FQNILNGKIEWPED--------------------------VEVSDEAIDLI 234

Query: 666 DKCLTVNPRLRI---SAEDALKHEFFA 689
            K L  +P  R+   S E+   H FF 
Sbjct: 235 SKLLVPDPEKRLGAKSIEEIKNHPFFK 261

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 54.4 bits (131), Expect = 8e-08
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 24/143 (16%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE----QNIKDIAKLRGS 609
           TK +R+P +L    +    +D+W+AG     ++ G+  F G  E    Q I +   +   
Sbjct: 181 TKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVRE 240

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRP--DFLEVIPSSLFDLVDK 667
           ED  E+       +  P  +      P            +RP  D L  +     D +++
Sbjct: 241 EDRNELL------NVIPSFVRNDGGEP------------RRPLRDLLPGVNPEALDFLEQ 282

Query: 668 CLTVNPRLRISAEDALKHEFFAP 690
            LT NP  R++AE+AL H + + 
Sbjct: 283 ILTFNPMDRLTAEEALMHPYMSC 305

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 38/149 (25%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTL--LYLMIGRTPFFGDPEQNIKD----IAKL 606
            T+ +RAPE+L RS      +DIW+ G  +  LY +    P F  P  +  D    I  +
Sbjct: 160 STRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTL---RPLF--PGSSEIDQLYKICSV 214

Query: 607 RGS--EDLW-EVAKLHNR-ESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS-- 660
            G+  +  W E  KL ++    FP+         P +L              ++IP++  
Sbjct: 215 LGTPTKQDWPEGYKLASKLGFRFPQ-------FAPTSLH-------------QLIPNASP 254

Query: 661 -LFDLVDKCLTVNPRLRISAEDALKHEFF 688
              DL+   L  +P+ R +A  AL+H +F
Sbjct: 255 EAIDLIKDMLRWDPKKRPTASQALQHPYF 283

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 18/153 (11%)

Query: 202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELR---MLERFGGKNF 258
           +F   E+ G G Y TVY+ R +  G +VA+K  H +A +   S  +R   +++    +N 
Sbjct: 1   NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHEN- 59

Query: 259 IIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID---------LSQLQWYGYCLFRALAS 309
           I++        +    V E++  D    LKK +D          + ++ + Y L + +A 
Sbjct: 60  IVRLHDVIHTENKLMLVFEYMDKD----LKKYMDTHGVRGALDPNTVKSFTYQLLKGIAF 115

Query: 310 LHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
            H+  ++HRD+KP N L + +  +  L DF LA
Sbjct: 116 CHENRVLHRDLKPQNLLINKRG-ELKLADFGLA 147

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 22/137 (16%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS--EDL 612
           +R P+VLF ++     +D+WSAG     L     P F   D +  +K I +L G+  E+ 
Sbjct: 165 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEES 224

Query: 613 W-EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
           W  V+KL +    +P         P         ++ K       + S+  DL+   L  
Sbjct: 225 WPGVSKLPD-YKPYP-------MYPATTS--LVNVVPK-------LNSTGRDLLQNLLVC 267

Query: 672 NPRLRISAEDALKHEFF 688
           NP  RISAE+AL+H +F
Sbjct: 268 NPVQRISAEEALQHPYF 284

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 9/129 (6%)

Query: 208 EEGSGGYGTVYRARRKNDGTVVAIK-----CPHANASKHYVSNELRMLERFGGKNFIIKY 262
           E G G +G VY AR      VVAIK        +N     +  E++ L+R    N  I+Y
Sbjct: 32  EIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPN-SIEY 90

Query: 263 EGCFKCGDSDCFVLEHV---KHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRD 319
           +GC+    +   V+E+      D  EV KK +   ++    +   + LA LH   ++HRD
Sbjct: 91  KGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRD 150

Query: 320 VKPGNFLFS 328
           +K GN L +
Sbjct: 151 IKAGNILLT 159

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 49/155 (31%), Positives = 66/155 (42%), Gaps = 21/155 (13%)

Query: 208 EEGSGGYGTVYRARR-KNDGTVVAIKCPHANASKHYVSNE-------LRMLERFGGKNFI 259
           E G G YG V++AR  KN G  VA+K       +  +          LR LE F   N +
Sbjct: 8   EIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVV 67

Query: 260 IKYEGCFKCGDSD-----CFVLEHVKHDRPEVLKKEID----LSQLQWYGYCLFRALASL 310
             ++ C     +D       V EHV  D    L K  +       ++   + L R L  L
Sbjct: 68  RLFDVC-TVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFL 126

Query: 311 HKQGIVHRDVKPGNFLF-SCKAVKGYLIDFNLAMV 344
           H   +VHRD+KP N L  S   +K  L DF LA +
Sbjct: 127 HSHRVVHRDLKPQNILVTSSGQIK--LADFGLARI 159

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 28/159 (17%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKN--- 257
                  E GSG  G VY+ R K  G V+A+K      +K      L  L+     +   
Sbjct: 15  NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCP 74

Query: 258 FIIKYEGCFKCGDSDCFV------------LEHVKHDRPEVLKKEIDLSQLQWYGYCLFR 305
           +I+K  G F   DSD F+            L+ ++   PE +  ++ ++        + +
Sbjct: 75  YIVKCYGYF-ITDSDVFICMELMSTCLDKLLKRIQGPIPEDILGKMTVA--------IVK 125

Query: 306 ALASL-HKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLA 342
           AL  L  K G++HRDVKP N L      VK  L DF ++
Sbjct: 126 ALHYLKEKHGVIHRDVKPSNILLDASGNVK--LCDFGIS 162

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 10/149 (6%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--VSNELRMLERFGGKNF 258
           E + + +  GSG YG VY+AR    G +VAIK         +  +  E+ ML+     N 
Sbjct: 3   EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPN- 61

Query: 259 IIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID--LSQLQWYGYC--LFRALASLHKQG 314
           I+ Y G +   D    V+E+      + + +     LS+LQ    C    + LA LH+ G
Sbjct: 62  IVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETG 121

Query: 315 IVHRDVKPGNFLFSCKA-VKGYLIDFNLA 342
            +HRD+K  N L +    VK  L DF ++
Sbjct: 122 KIHRDIKGANILLTEDGDVK--LADFGVS 148

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 8/149 (5%)

Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVA---IKCPHANASKHYVSNELRMLERFGGK 256
            E++I  ++ G G Y TVY+ R K    +VA   I+  H   +      E+ +L+     
Sbjct: 5   LETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHA 64

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQ 313
           N I+          S   V E++  D  + L      I++  ++ + + L R L   H++
Sbjct: 65  N-IVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRR 123

Query: 314 GIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
            ++HRD+KP N L + +  +  L DF LA
Sbjct: 124 KVLHRDLKPQNLLINERG-ELKLADFGLA 151

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 522 LLLTKLHPVPVLIIF---YLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSA 578
           +LL   +    L  F    LL     +       GT  + APEVL    +   K DIWS 
Sbjct: 123 ILLDSDNGKVKLADFGLSKLL--TSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSL 180

Query: 579 GVTLLYL 585
           GV L  L
Sbjct: 181 GVILYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 22/141 (15%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLW 613
           T+ +RAPE+L    + G  +D+W+ G  +  L+ G   F GD +            + L+
Sbjct: 164 TRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSD-----------IDQLY 212

Query: 614 EVAK-LHNRESSFPEDL-----YAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
            + K L     S  E       +A  + P  + PE    + +R  +   + S   D +  
Sbjct: 213 LIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPE---SLERR--YPGKVSSPALDFLKA 267

Query: 668 CLTVNPRLRISAEDALKHEFF 688
           CL ++P+ R++ ++ L+H +F
Sbjct: 268 CLRMDPKERLTCDELLQHPYF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-----CPHANASKHYVSNELRMLERFGG 255
           E F+   E G G +G VY A   +   VVA+K         N     +  E++ L++   
Sbjct: 21  EIFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKH 80

Query: 256 KNFIIKYEGCFKCGDSDCFVLEHV---KHDRPEVLKKEIDLSQLQWYGYCLFRALASLHK 312
            N  I+Y+GC+    +   V+E+      D  EV KK +   ++    +   + LA LH 
Sbjct: 81  PN-TIEYKGCYLKEHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHS 139

Query: 313 QGIVHRDVKPGNFLFS 328
             ++HRD+K GN L +
Sbjct: 140 HNMIHRDIKAGNILLT 155

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 35/164 (21%)

Query: 541 GNGKQKKDGPCAG---------TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP 591
           G     K G   G         T+ +R PE+L   +     +DIW  G  +   M  R P
Sbjct: 167 GPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGC-VFAEMFTRRP 225

Query: 592 FF---GDPEQNIKDIAKLRGS--EDLWEVAKLHNRESSFP--EDLYAAKSLPPINLPEWC 644
                 D +Q    I KL G+  E+ W          S P  E +++  + P        
Sbjct: 226 ILQGKSDIDQLHL-IFKLCGTPTEETWPGW------RSLPGCEGVHSFTNYPR------- 271

Query: 645 KLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
              T    F ++ P  L DL+ K L+++P  R++A DAL+H +F
Sbjct: 272 ---TLEERFGKLGPEGL-DLLSKLLSLDPYKRLTASDALEHPYF 311

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 40/137 (29%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
             G+  + APEV+ +    G   DIWS G T+L +  G+ P+           ++L G  
Sbjct: 161 FKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPW-----------SQLEGVA 209

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
            ++++ +              +K LPPI            PD L        D + KCL 
Sbjct: 210 AVFKIGR--------------SKELPPI------------PDHLS---DEAKDFILKCLQ 240

Query: 671 VNPRLRISAEDALKHEF 687
            +P LR +A + L+H F
Sbjct: 241 RDPSLRPTAAELLEHPF 257

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 39/137 (28%)

Query: 553 GTKGFRAPEVLFRSQHQG--PKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
           G+  + APEV+  S  QG   K+DIWS G  +L +  GR P + D E  I  + KL G++
Sbjct: 172 GSVFWMAPEVI-HSYSQGYSAKVDIWSLGCVVLEMFAGRRP-WSDEEA-IAAMFKL-GNK 227

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                                 +S PPI  P         PD    +     D ++ C T
Sbjct: 228 ----------------------RSAPPI--P---------PDVSMNLSPVALDFLNACFT 254

Query: 671 VNPRLRISAEDALKHEF 687
           +NP  R +A + L+H F
Sbjct: 255 INPDNRPTARELLQHPF 271

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 56/187 (29%), Positives = 75/187 (40%), Gaps = 44/187 (23%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC-------PHANASKHYVSNELRMLERFGGKNFIIKY 262
           G G YG V++ R +  G +VAIK        P     K     E+RML++    N +   
Sbjct: 10  GEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVI---KKIALREIRMLKQLKHPNLVNLI 66

Query: 263 EGCFK-----------CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLH 311
           E  F+           C  +    LE      PE L K+I    LQ   +C        H
Sbjct: 67  E-VFRRKRKLHLVFEYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFC--------H 117

Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA--MVGFDGSFNQ--AT--------LPG-T 358
           K   +HRDVKP N L + K  +  L DF  A  + G    +    AT        L G T
Sbjct: 118 KHNCIHRDVKPENILIT-KQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDT 176

Query: 359 KYVPPVN 365
           +Y PPV+
Sbjct: 177 QYGPPVD 183

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 44/163 (26%), Positives = 63/163 (38%), Gaps = 47/163 (28%)

Query: 544 KQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDI 603
           ++  D    GT  + APEV+ R Q  G  +D W+ G+ L   ++G  PFFGD        
Sbjct: 169 REFLDKQVCGTPEYIAPEVILR-QGYGKPVDWWAMGIILYEFLVGCVPFFGDT------- 220

Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD 663
                                 PE+L+       I   EW       P+  E +P+   D
Sbjct: 221 ----------------------PEELFGQVISDDI---EW-------PEGDEALPADAQD 248

Query: 664 LVDKCLTVNPRLRI---SAEDALKHEFFAPCHEMLRKQKLLRQ 703
           L+ + L  NP  R+    A +  +H FF      L    LLRQ
Sbjct: 249 LISRLLRQNPLERLGTGGAFEVKQHRFF----LGLDWNGLLRQ 287

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 15/144 (10%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT+ + +PE L +  H   + DIWS G++L+ + IGR P    P  + K++  + G    
Sbjct: 164 GTRSYMSPERL-QGTHYSVQSDIWSMGLSLVEMAIGRYPI---PPPDAKELELMFGCPVE 219

Query: 613 WEVAKLHN----RESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-----D 663
            + A+       R    P   Y   S PP+ + E    I   P     +PS +F     D
Sbjct: 220 GDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELLDYIVNEPP--PKLPSGVFGAEFQD 277

Query: 664 LVDKCLTVNPRLRISAEDALKHEF 687
            V+KCL  NP  R   +  + H F
Sbjct: 278 FVNKCLIKNPAERADLKQLMVHAF 301

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 31/144 (21%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN----IKDIAKLRGS 609
           T+ +RAPE L    + GPK+DIW+ G  + + ++   P F  P  N    I  I  + G+
Sbjct: 161 TRWYRAPECLLTDGYYGPKMDIWAVGC-VFFEILSLFPLF--PGTNELDQIAKIHDVLGT 217

Query: 610 EDLWEVAKLH---NRESSFP--EDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL 664
            D   + K     +   +FP  +     K LP  N                       DL
Sbjct: 218 PDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLP--NASAEG-----------------LDL 258

Query: 665 VDKCLTVNPRLRISAEDALKHEFF 688
           + K L  +P  RI+A+ AL+H +F
Sbjct: 259 LKKLLAYDPDERITAKQALRHPYF 282

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 18/153 (11%)

Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNE-------LRMLERFGGKNFII 260
           E G G YGTVY+AR  + G  VA+K      ++  +          L+ LE F   N + 
Sbjct: 7   EIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVR 66

Query: 261 KYEGCFKC-GDSD---CFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHK 312
             + C     D +     V EHV  D    L K     +    ++       R L  LH 
Sbjct: 67  LMDVCATSRTDRETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHA 126

Query: 313 QGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMV 344
             IVHRD+KP N L +    VK  L DF LA +
Sbjct: 127 NCIVHRDLKPENILVTSGGQVK--LADFGLARI 157

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 14/145 (9%)

Query: 211 SGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLER----FGGKNFIIKYEGCF 266
           +G YG VY  R K      A+K  +          +   +ER    F    F++     F
Sbjct: 11  NGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSF 70

Query: 267 KCGDSDCFVLEHVKHDRPEVLKKEI-----DLSQLQWYGYCLFRALASLHKQGIVHRDVK 321
           +     C V+E+V+      L K I     D++++ +    L  AL  LH  GIVHRD+K
Sbjct: 71  ETKRHLCMVMEYVEGGDCATLLKNIGALPVDMARMYFAETVL--ALEYLHNYGIVHRDLK 128

Query: 322 PGNFLF-SCKAVKGYLIDFNLAMVG 345
           P N L  S   +K  L DF L+ +G
Sbjct: 129 PDNLLITSMGHIK--LTDFGLSKIG 151

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 30/173 (17%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPH-----ANASKHYVSNELRMLERFGGKNFIIKYEG 264
           G G +G V  A  K    + A+K         +        E R+L   G   F+ +   
Sbjct: 4   GKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHS 63

Query: 265 CFKCGDSDCFVLE---------HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGI 315
           CF+  D   FV+E         H++           D  + ++Y   +   L  LH++GI
Sbjct: 64  CFQTKDRLFFVMEYVNGGDLMFHIQRSG------RFDEPRARFYAAEIVLGLQFLHERGI 117

Query: 316 VHRDVKPGNFLFS----CKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           ++RD+K  N L       K     + DF +   G  G    +T  GT  Y+ P
Sbjct: 118 IYRDLKLDNVLLDSEGHIK-----IADFGMCKEGILGGVTTSTFCGTPDYIAP 165

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 11/142 (7%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS----NELRMLERFGGKNFI-IKYEG 264
           G G YG VYRAR    G +VA+K    +  +  +      E+ +L      N + +K   
Sbjct: 16  GEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVV 75

Query: 265 CFKCGDSDCFVLEHVKHDRPEVL---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVK 321
             K  DS   V+E+ + D   +L         SQ++     L R L  LH+  I+HRD+K
Sbjct: 76  VGKHLDSIFLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLK 135

Query: 322 PGNFLFSCKA-VKGYLIDFNLA 342
             N L + K  +K  + DF LA
Sbjct: 136 VSNLLLTDKGCLK--IADFGLA 155

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 46/156 (29%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-------NELRMLERFGGKNFIIKY 262
           G G +  V +A+ +  G   AIKC      KH+ S        E++ L R      I++ 
Sbjct: 8   GEGTFSEVLKAQSRKTGKYYAIKC----MKKHFKSLEQVNNLREIQALRRLSPHPNILR- 62

Query: 263 EGCFKCGDSDCFVLEHVKHDRP--------EVL-----------KKEIDLSQLQWYGYCL 303
                        L  V  DR         E++           K+ +   +++ Y Y L
Sbjct: 63  -------------LIEVLFDRKTGRLALVFELMDMNLYELIKGRKRPLPEKRVKSYMYQL 109

Query: 304 FRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDF 339
            ++L  +H+ GI HRD+KP N L     +K  L DF
Sbjct: 110 LKSLDHMHRNGIFHRDIKPENILIKDDILK--LADF 143

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 52.4 bits (125), Expect = 5e-07
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 19/144 (13%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLRGS 609
           T+ +RAPE++    H    +DIWS G  +  L+ G+  F G    D  + I ++      
Sbjct: 178 TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSP 237

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           E L +++  H R+          +SLP +   +  K+      F    P ++ DL++K L
Sbjct: 238 EVLKKISSEHARKY--------IQSLPHMPQQDLKKI------FRGANPLAI-DLLEKML 282

Query: 670 TVNPRLRISAEDALKHEFFAPCHE 693
            ++   RISA +AL H +F+  H+
Sbjct: 283 VLDSDKRISASEALAHPYFSQYHD 306

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 51.3 bits (122), Expect = 5e-07
 Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 33/162 (20%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIK 261
           F + E  G+G YG VY+ R    G + AIK        +  +  E+ ML+++     I  
Sbjct: 8   FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIAT 67

Query: 262 YEGCFK-----------------CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC-- 302
           Y G F                  CG     V + +K+ +   LK+E       W  Y   
Sbjct: 68  YYGAFIKKNPPGMDDQLWLVMEFCGAGS--VTDLIKNTKGNTLKEE-------WIAYICR 118

Query: 303 -LFRALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLA 342
            + R L+ LH+  ++HRD+K  N L +  A VK  L+DF ++
Sbjct: 119 EILRGLSHLHQHKVIHRDIKGQNVLLTENAEVK--LVDFGVS 158

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 43/147 (29%), Positives = 62/147 (42%), Gaps = 25/147 (17%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGSED 611
           T+ +RAPE++   Q     +D+WS G  L  L+ GR P F   D    +  I ++ G+ D
Sbjct: 172 TRWYRAPEIMLSFQSYTKAIDVWSVGCILAELL-GRKPVFKGKDYVDQLNQILQVLGTPD 230

Query: 612 ---LWEVA--KLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD 666
              L  +   K  N   S P      K    I            P  L        DL++
Sbjct: 231 EETLSRIGSPKAQNYIRSLPN--IPKKPFESIF-------PNANPLAL--------DLLE 273

Query: 667 KCLTVNPRLRISAEDALKHEFFAPCHE 693
           K L  +P  RIS E+AL+H + A  H+
Sbjct: 274 KLLAFDPTKRISVEEALEHPYLAIWHD 300

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7; Provisional

 Score = 52.5 bits (126), Expect = 6e-07
 Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 40/177 (22%)

Query: 201 ESFIVEEEEGSGGYGTVYRA-----RRKNDGTVVAIKCPHANASKHYVSNELR------- 248
           + F++ ++ G G +G VY+A     + K +G  V  K     A + +++  +R       
Sbjct: 132 DDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNERVRRACPNSC 191

Query: 249 ------MLERFGGKN-----FIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDL 293
                  LE    K       + +YEG     +S    L   K    +  P +L K  DL
Sbjct: 192 ADFVYGFLEPVSSKKEDEYWLVWRYEG-----ESTLADLMQSKEFPYNVEPYLLGKVQDL 246

Query: 294 SQ--------LQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
            +        +Q     +  AL  LH  GIVHRDVKP N +FS  +    +ID   A
Sbjct: 247 PKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAA 303

Length = 566

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 38/140 (27%), Positives = 52/140 (37%), Gaps = 48/140 (34%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APEV+    +   K DIWS G+T + +  G+ P+         DI  +R     
Sbjct: 161 GTPFWMAPEVIQEIGYNN-KADIWSLGITAIEMAEGKPPYS--------DIHPMRA---- 207

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINL--PE-WCKLITKRPDFLEVIPSSLF-DLVDKC 668
                           ++   + PP  L  PE W               S  F D V KC
Sbjct: 208 ----------------IFMIPNKPPPTLSDPEKW---------------SPEFNDFVKKC 236

Query: 669 LTVNPRLRISAEDALKHEFF 688
           L  +P  R SA   L+H F 
Sbjct: 237 LVKDPEERPSAIQLLQHPFI 256

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 42/139 (30%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
           +GT G+ APEVL R  +    +D WS GVT    + G+ P+ G                 
Sbjct: 160 SGTPGYMAPEVLCRQGY-SVAVDWWSLGVTAYECLRGKRPYRG----------------- 201

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                      S    D   AK              T    +     +   D ++K L  
Sbjct: 202 ----------HSRTIRDQIRAKQE------------TADVLYPATWSTEAIDAINKLLER 239

Query: 672 NPRLRIS--AEDALKHEFF 688
           +P+ R+    +D   H +F
Sbjct: 240 DPQKRLGDNLKDLKNHPYF 258

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 22/144 (15%)

Query: 550 PCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRG 608
           P   T  +RAPE+L         +D+W+ G  L  L+  +    G  E + +  I +L G
Sbjct: 167 PKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLG 226

Query: 609 S--EDLWE-VAKL-HNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL 664
           +  E +W   + L    + + P+  Y        NL         +  F  +  + L  L
Sbjct: 227 TPNESIWPGFSDLPLVGKFTLPKQPYN-------NL---------KHKFPWLSEAGL-RL 269

Query: 665 VDKCLTVNPRLRISAEDALKHEFF 688
           ++  L  +P+ R +AE+AL+  +F
Sbjct: 270 LNFLLMYDPKKRATAEEALESSYF 293

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 16/153 (10%)

Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVA---IKCPHANASKHYVSNELRMLERFGGK 256
            E++I  E+ G G Y TV++ R K    +VA   I+  H   +      E+ +L+     
Sbjct: 5   METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHA 64

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID-------LSQLQWYGYCLFRALAS 309
           N I+          S   V E++  D    LK+ +D       +  ++ + Y + R LA 
Sbjct: 65  N-IVTLHDIVHTDKSLTLVFEYLDKD----LKQYMDDCGNIMSMHNVKIFLYQILRGLAY 119

Query: 310 LHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
            H++ ++HRD+KP N L + +  +  L DF LA
Sbjct: 120 CHRRKVLHRDLKPQNLLINERG-ELKLADFGLA 151

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 17/143 (11%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT+ + +PE L +  H   + DIWS G++L+ + IGR P    P  + K++  + G    
Sbjct: 160 GTRSYMSPERL-QGTHYTVQSDIWSLGLSLVEMAIGRYPI---PPPDAKELEAMFGRPVS 215

Query: 613 -WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-----DLVD 666
             E  + H   S  P D     S  P+ + E    I   P     +PS  F     D VD
Sbjct: 216 EGEAKESHRPVSGHPPD-----SPRPMAIFELLDYIVNEPP--PKLPSGAFSDEFQDFVD 268

Query: 667 KCLTVNPRLRISAEDALKHEFFA 689
           KCL  NP+ R   ++  KH F  
Sbjct: 269 KCLKKNPKERADLKELTKHPFIK 291

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 46/160 (28%), Positives = 66/160 (41%), Gaps = 33/160 (20%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVSNELRMLERFGGKN 257
           E F + E  G G +G VY+A  K    VVAIK      A      +  E++ L +     
Sbjct: 1   ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSP- 59

Query: 258 FIIKYEGCF-----------KCGDSDCF-VLEHVKHDRPE--VLKKEIDLSQLQWYGYCL 303
           +I KY G F            CG   C  +L+  K D      + +E+            
Sbjct: 60  YITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGKLDETYIAFILREV------------ 107

Query: 304 FRALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLA 342
              L  LH++G +HRD+K  N L S +  VK  L DF ++
Sbjct: 108 LLGLEYLHEEGKIHRDIKAANILLSEEGDVK--LADFGVS 145

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 26/158 (16%)

Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVA---IKCPHANASKHYVSNELRMLERFGGK 256
            E+++  ++ G G Y TV++ R K    +VA   I+  H   +      E+ +L+     
Sbjct: 4   LETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHA 63

Query: 257 NF-----IIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID-------LSQLQWYGYCLF 304
           N      II  E C         V E++  D    LK+ +D       +  ++ + + L 
Sbjct: 64  NIVTLHDIIHTERCLT------LVFEYLDSD----LKQYLDNCGNLMSMHNVKIFMFQLL 113

Query: 305 RALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           R L+  HK+ I+HRD+KP N L + K  +  L DF LA
Sbjct: 114 RGLSYCHKRKILHRDLKPQNLLINEKG-ELKLADFGLA 150

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 37/140 (26%), Positives = 51/140 (36%), Gaps = 42/140 (30%)

Query: 552 AGTKGFRAPEVLFRSQHQG--PKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGS 609
            GT  + APEV+   Q  G   K DIWS G+T + L  G  P+           +K    
Sbjct: 167 VGTPCWMAPEVM--EQVHGYDFKADIWSFGITAIELATGAAPY-----------SKYPPM 213

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-DLVDKC 668
           + L  +  L N   S        K                         S  F  ++  C
Sbjct: 214 KVL--MLTLQNDPPSLETGADYKKY------------------------SKSFRKMISLC 247

Query: 669 LTVNPRLRISAEDALKHEFF 688
           L  +P  R +AE+ LKH+FF
Sbjct: 248 LQKDPSKRPTAEELLKHKFF 267

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 20/149 (13%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGKNFIIKY 262
           E+ G G YG VY+AR K  G +VA+K          V +    E+ +L+     N I++ 
Sbjct: 5   EKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPN-IVRL 63

Query: 263 EGCFKCGDSDCFVLEHVKHDRPEVLKK--------EIDLSQLQWYGYCLFRALASLHKQG 314
                  +    V E +  D    LKK         +D   ++ Y Y L + +A  H   
Sbjct: 64  LDVVHSENKLYLVFEFLDLD----LKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHR 119

Query: 315 IVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           ++HRD+KP N L   + A+K  L DF LA
Sbjct: 120 VLHRDLKPQNLLIDREGALK--LADFGLA 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 17/146 (11%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHAN------ASKHYVSNELRMLERFGGKNFIIKYE 263
           GSG YGTV  A  +  G  VAIK  +        A + Y   ELR+L+    +N +I   
Sbjct: 24  GSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAY--RELRLLKHMKHEN-VIGLL 80

Query: 264 GCFKCGDS-DCF-----VLEHVKHDRPEVLKKE-IDLSQLQWYGYCLFRALASLHKQGIV 316
             F    S D F     V+  +  D  +++K E +   ++Q+  Y + + L  +H  GI+
Sbjct: 81  DVFTPDLSLDRFHDFYLVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAAGII 140

Query: 317 HRDVKPGNFLFSCKAVKGYLIDFNLA 342
           HRD+KPGN   + +  +  ++DF LA
Sbjct: 141 HRDLKPGNLAVN-EDCELKILDFGLA 165

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 20/147 (13%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHAN------ASKHYVSNELRMLERFGGKNFIIKYE 263
           GSG YG+V  A  K  G  VAIK           A + Y   EL +L+    +N +I   
Sbjct: 24  GSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAY--RELTLLKHMQHEN-VIGLL 80

Query: 264 GCFKCGDS-DCF-----VLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
             F    S D F     V+ +++ D  +++   +   ++Q+  Y +   L  +H  GI+H
Sbjct: 81  DVFTSAVSGDEFQDFYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIH 140

Query: 318 RDVKPGNFLFS--CKAVKGYLIDFNLA 342
           RD+KPGN   +  C+     ++DF LA
Sbjct: 141 RDLKPGNLAVNEDCEL---KILDFGLA 164

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 23/150 (15%)

Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEG 264
           E G+G  G V +   +  G ++A+K        A +  +  EL +L +      +  Y  
Sbjct: 8   ELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGA 67

Query: 265 CFKCGD-------SDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQ-GIV 316
            +  GD        D   L+ +     + ++  I    L      + + L  LH++  I+
Sbjct: 68  FYNNGDISICMEYMDGGSLDKIL----KEVQGRIPERILGKIAVAVLKGLTYLHEKHKII 123

Query: 317 HRDVKPGNFLFSCK--------AVKGYLID 338
           HRDVKP N L + +         V G L++
Sbjct: 124 HRDVKPSNILVNSRGQIKLCDFGVSGQLVN 153

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 19/152 (12%)

Query: 206 EEEEGSGGYGTVYRARRKNDGTVVAIK---CPHANASKHYVSNELRMLERFGGKNFIIKY 262
             E G G +GTV +   K  GT++A+K          +  +  +L ++ R     +I+K+
Sbjct: 9   LGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKF 68

Query: 263 EGC-FKCGDS-DCFVLEHVKHDR-----PEVLKKEIDLSQLQWYGYCLFRALASLHKQ-G 314
            G  F+ GD   C  L  +  D+      EVLK  I    L        +AL  L ++  
Sbjct: 69  YGALFREGDCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELK 128

Query: 315 IVHRDVKPGNFLFSCK-AVK-------GYLID 338
           I+HRDVKP N L      +K       G L+D
Sbjct: 129 IIHRDVKPSNILLDRNGNIKLCDFGISGQLVD 160

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 8/148 (5%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVSNELRMLERFGGKN 257
           +S+   E+ G G Y TVY+ + K +G +VA+K         +      E  +L+     N
Sbjct: 5   DSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHAN 64

Query: 258 FIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQG 314
            ++ ++      ++   V E+V  D  + + K    +    ++ + + L R L+ +H++ 
Sbjct: 65  IVLLHD-IIHTKETLTLVFEYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRY 123

Query: 315 IVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           I+HRD+KP N L S    +  L DF LA
Sbjct: 124 ILHRDLKPQNLLIS-DTGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 297 QWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGY--LIDFNLAM 343
           ++Y   L  AL S+HK G +HRD+KP N L       G+  L DF L  
Sbjct: 104 RFYIAELVLALDSVHKLGFIHRDIKPDNILID---ADGHIKLADFGLCK 149

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 10/149 (6%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVA---IKCPHANASKHYVSNELRMLERFGGKN 257
           E++   ++ G G Y TVY+ R K  G +VA   I+  H   +      E  +L+     N
Sbjct: 5   ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHAN 64

Query: 258 FIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQG 314
            I+          +   V E++  D  + +      + +  ++ + + L R LA  H++ 
Sbjct: 65  -IVTLHDIIHTKKTLTLVFEYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRR 123

Query: 315 IVHRDVKPGNFLFS-CKAVKGYLIDFNLA 342
           ++HRD+KP N L S    +K  L DF LA
Sbjct: 124 VLHRDLKPQNLLISERGELK--LADFGLA 150

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 33/162 (20%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHY-VSNELRMLERFGGKNFIIK 261
           F + E  G+G YG VY+ R    G + AIK       +   +  E+ ML+++     I  
Sbjct: 18  FELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIAT 77

Query: 262 YEGCFK-----------------CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC-- 302
           Y G F                  CG     V + VK+ +   LK++       W  Y   
Sbjct: 78  YYGAFIKKSPPGHDDQLWLVMEFCGAGS--VTDLVKNTKGNALKED-------WIAYICR 128

Query: 303 -LFRALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLA 342
            + R LA LH   ++HRD+K  N L +  A VK  L+DF ++
Sbjct: 129 EILRGLAHLHAHKVIHRDIKGQNVLLTENAEVK--LVDFGVS 168

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 26/168 (15%)

Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--VSNELRMLERFGGKNFIIKYEGC 265
           E G G +G VY+A+ K  G   A K     + +       E+ +L      N +  YE  
Sbjct: 12  ELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAY 71

Query: 266 FK----------C--GDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQ 313
           F           C  G  D  +LE         L++ +   Q+++    +  AL  LH  
Sbjct: 72  FYENKLWILIEFCDGGALDSIMLE---------LERGLTEPQIRYVCRQMLEALNFLHSH 122

Query: 314 GIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
            ++HRD+K GN L +    VK  L DF ++         + T  GT Y
Sbjct: 123 KVIHRDLKAGNILLTLDGDVK--LADFGVSAKNKSTLQKRDTFIGTPY 168

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 25/150 (16%)

Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNE--------LR---MLERFGGK 256
           EEG+  YG VYRAR K  G +VA+K       K  +  E        LR   +L +    
Sbjct: 14  EEGT--YGVVYRARDKKTGEIVALK-------KLKMEKEKEGFPITSLREINILLKLQHP 64

Query: 257 NFIIKYEGCFKCGDSDCF-VLEHVKHDRP---EVLKKEIDLSQLQWYGYCLFRALASLHK 312
           N +   E          + V+E+V+HD     E +K+    S+++     L   +A LH 
Sbjct: 65  NIVTVKEVVVGSNLDKIYMVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHD 124

Query: 313 QGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
             I+HRD+K  N L + + +   + DF LA
Sbjct: 125 NWILHRDLKTSNLLLNNRGILK-ICDFGLA 153

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 24/153 (15%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFI---------- 259
           G G YG V +A     G +VAIK        + V+ + R L    G +F           
Sbjct: 18  GEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVT-KDRQLVGMCGIHFTTLRELKIMNE 76

Query: 260 IKYEG------CFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC----LFRALAS 309
           IK+E        +  GD    V++ +  D  +V+ ++I L++ Q    C    +   L  
Sbjct: 77  IKHENIMGLVDVYVEGDFINLVMDIMASDLKKVVDRKIRLTESQ--VKCILLQILNGLNV 134

Query: 310 LHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           LHK   +HRD+ P N   + K +   + DF LA
Sbjct: 135 LHKWYFMHRDLSPANIFINSKGICK-IADFGLA 166

Length = 335

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 44/165 (26%), Positives = 69/165 (41%), Gaps = 36/165 (21%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKN 257
           +   V EE G G YG V + R    GT++A+K   A      +  +  +L +  R     
Sbjct: 1   DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCP 60

Query: 258 FIIKYEGC-FKCGDS-----------DCF---VLEHVKHDRPEVLKKEIDLSQLQWYGYC 302
           + + + G  F+ GD            D F   V +       ++L K I +S        
Sbjct: 61  YTVTFYGALFREGDVWICMEVMDTSLDKFYKKVYDKGLTIPEDILGK-IAVS-------- 111

Query: 303 LFRALASLHKQ-GIVHRDVKPGNFLFS-------CK-AVKGYLID 338
           + +AL  LH +  ++HRDVKP N L +       C   + GYL+D
Sbjct: 112 IVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVD 156

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 25/167 (14%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK--CPHANASKHYVS----NELRMLERFGGKNFIIKYE 263
           G G YG V  A  K  G  VAIK   P               E+++L RF  +N II   
Sbjct: 14  GEGAYGMVCSATHKPTGVKVAIKKISPF---EHQTFCQRTLREIKILRRFKHEN-IIGIL 69

Query: 264 GCFKCGDSDCF-----VLEHVKHDRPEVLKKEIDLS--QLQWYGYCLFRALASLHKQGIV 316
              +    + F     V E ++ D  +++K +  LS   +Q++ Y + R L  +H   ++
Sbjct: 70  DIIRPPSFESFNDVYIVQELMETDLYKLIKTQ-HLSNDHIQYFLYQILRGLKYIHSANVL 128

Query: 317 HRDVKPGNFLF--SCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYV 361
           HRD+KP N L   +C  +K  + DF LA +      +   L  T+YV
Sbjct: 129 HRDLKPSNLLLNTNCD-LK--ICDFGLARIADPEHDHTGFL--TEYV 170

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 49/187 (26%), Positives = 65/187 (34%), Gaps = 59/187 (31%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIK-----------------------CPHANASKHYV 243
           E  G G    VY A    +   VAIK                       C H N  K+Y 
Sbjct: 7   EVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYT 66

Query: 244 S----NELRMLERF--GGKNF-IIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL 296
           S    +EL ++  +  GG    I+K    +  G  D  ++  V     EVLK        
Sbjct: 67  SFVVGDELWLVMPYLSGGSLLDIMKSS--YPRGGLDEAIIATVLK---EVLK-------- 113

Query: 297 QWYGYCLFRALASLHKQGIVHRDVKPGNFLF-SCKAVKGYLIDFNLAMVGFDGSFNQA-- 353
                     L  LH  G +HRD+K GN L     +VK  + DF ++    DG       
Sbjct: 114 ---------GLEYLHSNGQIHRDIKAGNILLGEDGSVK--IADFGVSASLADGGDRTRKV 162

Query: 354 --TLPGT 358
             T  GT
Sbjct: 163 RKTFVGT 169

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 24/141 (17%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD-PEQNIKDIAKLRGSEDL 612
           T+ +RAPE+L  S+H    +DIWS G     L+  R  F    P Q +  I  L G+  L
Sbjct: 167 TQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSL 226

Query: 613 WEV------AKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD 666
             +      A+ H         +      PP +LP    L +      E        L+ 
Sbjct: 227 EAMRSACEGARAH---------ILRGPHKPP-SLPVLYTLSS--QATHEA-----VHLLC 269

Query: 667 KCLTVNPRLRISAEDALKHEF 687
           + L  +P  RISA DAL H +
Sbjct: 270 RMLVFDPDKRISAADALAHPY 290

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 48.9 bits (116), Expect = 7e-06
 Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 15/146 (10%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII----KYEGC 265
           G+G +G VY A   +    VAIK         Y + EL +++     N I      Y  C
Sbjct: 75  GNGSFGVVYEAICIDTSEKVAIK--KVLQDPQYKNRELLIMKNLNHINIIFLKDYYYTEC 132

Query: 266 FKCGDSDCF---VLEHVKHDRPEVLK------KEIDLSQLQWYGYCLFRALASLHKQGIV 316
           FK  + + F   V+E +     + +K        + L  ++ Y Y L RALA +H + I 
Sbjct: 133 FKKNEKNIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFIC 192

Query: 317 HRDVKPGNFLFSCKAVKGYLIDFNLA 342
           HRD+KP N L         L DF  A
Sbjct: 193 HRDLKPQNLLIDPNTHTLKLCDFGSA 218

Length = 440

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 35/191 (18%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN-----------EL 247
               + +  + G G +G VY+AR+   G VVA+K       K  + N           E+
Sbjct: 6   KLRDYEILGKLGEGTFGEVYKARQIKTGRVVALK-------KILMHNEKDGFPITALREI 58

Query: 248 RMLERFGGKNFIIKYEGCFKCGDSD-----CF--VLEHVKHDRPEVLKKE---IDLSQLQ 297
           ++L++    N +   +   +  D           V  ++ HD   +L+     +  SQ++
Sbjct: 59  KILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSVKLTESQIK 118

Query: 298 WYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG 357
            Y   L   +  LH+  I+HRD+K  N L   + +   + DF LA   +DG       P 
Sbjct: 119 CYMLQLLEGINYLHENHILHRDIKAANILIDNQGIL-KIADFGLARP-YDGP-----PPN 171

Query: 358 TKYVPPVNGRK 368
            K       RK
Sbjct: 172 PKGGGGGGTRK 182

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 30/173 (17%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEG 264
           G G +G V  AR K  G + A+K    +             E R+L       F+ +   
Sbjct: 4   GKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYC 63

Query: 265 CFKCGDSDCFVLE---------HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGI 315
           CF+  D   FV+E         H++  R        D ++ ++Y   +  AL  LH +GI
Sbjct: 64  CFQTPDRLFFVMEFVNGGDLMFHIQKSR------RFDEARARFYAAEITSALMFLHDKGI 117

Query: 316 VHRDVKPGNFLFS----CKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           ++RD+K  N L      CK     L DF +   G       +T  GT  Y+ P
Sbjct: 118 IYRDLKLDNVLLDHEGHCK-----LADFGMCKEGIFNGKTTSTFCGTPDYIAP 165

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 18/132 (13%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-------GGKNFIIKY 262
           G GG+G VY  R+ + G + A+KC      K      L + ER        G   FI+  
Sbjct: 3   GRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCM 62

Query: 263 EGCFKCGDSDCFVLE-------HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGI 315
              F   D  CF+L+       H    +  V  ++    ++++Y   +   L  +H + +
Sbjct: 63  TYAFHTPDKLCFILDLMNGGDLHYHLSQHGVFSEK----EMRFYATEIILGLEHMHNRFV 118

Query: 316 VHRDVKPGNFLF 327
           V+RD+KP N L 
Sbjct: 119 VYRDLKPANILL 130

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 11/125 (8%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK------CPHANASKHYVSNELRMLERFGGKNFIIKYE 263
           G G +G V  AR +  G  VAIK           A + Y   EL++L+    +N II   
Sbjct: 19  GMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTY--RELKLLKHLRHEN-IISLS 75

Query: 264 GCFKCGDSDC-FVLEHVKHDRPEVLK-KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVK 321
             F     D  FV E +  D   +L  + ++   +Q++ Y + R L  +H  G+VHRD+K
Sbjct: 76  DIFISPLEDIYFVTELLGTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLK 135

Query: 322 PGNFL 326
           P N L
Sbjct: 136 PSNIL 140

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 17/149 (11%)

Query: 206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGKNFIIK 261
            E+ G G YG VY+AR +     +A+K          V +    E+ +L+     N I++
Sbjct: 7   VEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGN-IVR 65

Query: 262 YEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQ--------LQWYGYCLFRALASLHKQ 313
            +           V E++  D    LKK +D S         ++ Y Y + R +A  H  
Sbjct: 66  LQDVVHSEKRLYLVFEYLDLD----LKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH 121

Query: 314 GIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
            ++HRD+KP N L   +     L DF LA
Sbjct: 122 RVLHRDLKPQNLLIDRRTNALKLADFGLA 150

Length = 294

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 50/137 (36%), Positives = 66/137 (48%), Gaps = 26/137 (18%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF---GDPEQ--NIKDIAKLRGSED 611
           +RAPEVL +S +  P +D+WS G  +   M  R P F    D +Q   I D+  L G ED
Sbjct: 175 YRAPEVLLQSSYATP-VDLWSVGC-IFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEED 232

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
            W       R+ + P   + +KS  PI      K +    D  E+      DL+ KCLT 
Sbjct: 233 -WP------RDVALPRQAFHSKSAQPIE-----KFV---TDIDELGK----DLLLKCLTF 273

Query: 672 NPRLRISAEDALKHEFF 688
           NP  RISA  AL H +F
Sbjct: 274 NPAKRISAYSALSHPYF 290

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 39/140 (27%), Positives = 53/140 (37%), Gaps = 45/140 (32%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSE 610
            GT  + APEVL R    G + D WS GV +LY M+ G  PF+               S+
Sbjct: 191 VGTPDYIAPEVL-RGTPYGLECDWWSLGV-ILYEMLYGFPPFY---------------SD 233

Query: 611 DLWEVA-KLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
            L E   K+ N    + E L      PP                   +     DL+ + L
Sbjct: 234 TLQETYNKIIN----WKESLR----FPPD----------------PPVSPEAIDLICRLL 269

Query: 670 TVNPRLRI-SAEDALKHEFF 688
             +P  R+ S E+   H FF
Sbjct: 270 C-DPEDRLGSFEEIKSHPFF 288

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 15/147 (10%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-----NELRMLERFGGKNFIIKYEG 264
           G G +G V+      DG  VA+K    N  ++ VS      EL+ML  F   N +   + 
Sbjct: 9   GYGAFGVVWSVTDPRDGKRVALK-KMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALD- 66

Query: 265 CFKCGDSDCF-----VLEHVKHDRPEVLKKEIDLS--QLQWYGYCLFRALASLHKQGIVH 317
             +    D F     V E ++ D  +++     LS   ++ + Y + R L  LH  GI+H
Sbjct: 67  ILQPPHIDPFEEIYVVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILH 126

Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLAMV 344
           RD+KPGN L +   V   + DF LA V
Sbjct: 127 RDIKPGNLLVNSNCVLK-ICDFGLARV 152

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 26/178 (14%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEG 264
           G G +G V  A+RK DG   A+K            + ++  E  +L +     F++    
Sbjct: 4   GKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHY 63

Query: 265 CFKCGDSDCFVLE---------HVKHDR--PEVLKKEIDLSQLQWYGYCLFRALASLHKQ 313
            F+  +   FVL+         H++ +R  PE         + ++Y   +  AL  LH  
Sbjct: 64  SFQTTEKLYFVLDFVNGGELFFHLQRERSFPE--------PRARFYAAEIASALGYLHSI 115

Query: 314 GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPPVNGRKVP 370
            IV+RD+KP N L   +     L DF L   G   S    T  GT +Y+ P   RK P
Sbjct: 116 NIVYRDLKPENILLDSQG-HVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQP 172

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 19/150 (12%)

Query: 210 GSGGYGTVYRAR----RKNDGTVVAIKCPHANASKHYVS---NELRMLERFGGKNFIIKY 262
           G G +G V   R      N G  VA+K  + +  + + S    E+ +L     +N I+KY
Sbjct: 13  GEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHEN-IVKY 71

Query: 263 EGCF--KCGDSDCFVLEHV-----KHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGI 315
           +G      G S   ++E++     +       + +I+L +L  +   + + +  L  Q  
Sbjct: 72  KGVCEKPGGRSLRLIMEYLPSGSLRDYLQR-HRDQINLKRLLLFSSQICKGMDYLGSQRY 130

Query: 316 VHRDVKPGNFLF-SCKAVKGYLIDFNLAMV 344
           +HRD+   N L  S   VK  + DF LA V
Sbjct: 131 IHRDLAARNILVESEDLVK--ISDFGLAKV 158

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 22/147 (14%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPH-----ANASKHYVSNELRMLERFGGKN--FIIKY 262
           G G +G V  A  K  G + AIK        A      +  E R+ E    +   F++  
Sbjct: 8   GRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNL 67

Query: 263 EGCFKCGDSDCFVLEHVK------HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIV 316
             CF+  D  CFV+E+        H   +V        +  +Y  C+   L  LH+  IV
Sbjct: 68  FACFQTEDHVCFVMEYAAGGDLMMHIHTDVF----SEPRAVFYAACVVLGLQYLHENKIV 123

Query: 317 HRDVKPGNFLFSCKAVKGYL--IDFNL 341
           +RD+K  N L      +G++   DF L
Sbjct: 124 YRDLKLDNLLLD---TEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 18/132 (13%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-------GGKNFIIKY 262
           G GG+G VY  R+ + G + A+KC      K      L + ER        G   FI+  
Sbjct: 3   GRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCM 62

Query: 263 EGCFKCGDSDCFVLE-------HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGI 315
              F   D   F+L+       H    +  V  +    +++++Y   +   L  +H + +
Sbjct: 63  SYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSE----AEMRFYAAEIILGLEHMHNRFV 118

Query: 316 VHRDVKPGNFLF 327
           V+RD+KP N L 
Sbjct: 119 VYRDLKPANILL 130

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 23/141 (16%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLW 613
           T+ +RAPE+L      G  +DIW+ G  +  ++ G   F GD      DI      + L+
Sbjct: 163 TRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGD-----SDI------DQLY 211

Query: 614 EVAKL------HNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
            + K        ++E      L+A   LP +   E    + KR      +   + DL  +
Sbjct: 212 HIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIE---PLEKR---FPKLSGLVLDLAKQ 265

Query: 668 CLTVNPRLRISAEDALKHEFF 688
           CL ++P  R S+   L HEFF
Sbjct: 266 CLRIDPDDRPSSSQLLHHEFF 286

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 42/146 (28%)

Query: 544 KQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDI 603
           +Q K     GT  + APEV+ R  + GPK+DIWS G+  + ++ G  P+    E  ++ +
Sbjct: 168 EQSKRSTMVGTPYWMAPEVVTRKAY-GPKVDIWSLGIMAIEMVEGEPPYLN--ENPLRAL 224

Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF- 662
                                    L A    P +  PE  KL            S++F 
Sbjct: 225 Y------------------------LIATNGTPELQNPE--KL------------SAIFR 246

Query: 663 DLVDKCLTVNPRLRISAEDALKHEFF 688
           D +++CL ++   R SA++ L+H F 
Sbjct: 247 DFLNRCLEMDVEKRGSAKELLQHPFL 272

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 36/141 (25%), Positives = 52/141 (36%), Gaps = 49/141 (34%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSED 611
           GT  + +PE+L   +  G   D+W+ G   +Y M+ G+ PF G  E              
Sbjct: 184 GTAEYVSPELL-NEKPAGKSSDLWALGCI-IYQMLTGKPPFRGSNEYLTFQ--------- 232

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                K+   E SFP            N P   K                 DL++K L +
Sbjct: 233 -----KILKLEYSFPP-----------NFPPDAK-----------------DLIEKLLVL 259

Query: 672 NPRLRISAE---DALK-HEFF 688
           +P+ R+      D LK H FF
Sbjct: 260 DPQDRLGVNEGYDELKAHPFF 280

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 19/156 (12%)

Query: 205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLE-----RFGGKNFI 259
           ++E  G G YG V  A   + G  VAIK  + +  +H VS+  R+L      R      I
Sbjct: 4   IQEVIGKGSYGVVCSAIDTHTGEKVAIKKIN-DVFEH-VSDATRILREIKLLRLLRHPDI 61

Query: 260 IKYEGCFKCGDSDCF-----VLEHVKHDRPEVLKKEIDLS--QLQWYGYCLFRALASLHK 312
           ++ +          F     V E ++ D  +V+K   DL+    Q++ Y L RAL  +H 
Sbjct: 62  VEIKHIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHT 121

Query: 313 QGIVHRDVKPGNFLFS--CKAVKGYLIDFNLAMVGF 346
             + HRD+KP N L +  CK     + DF LA V F
Sbjct: 122 ANVFHRDLKPKNILANADCKL---KICDFGLARVAF 154

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--VSNELRMLERFGGKNFIIKYEGCFK 267
           G G YG VY AR  +    +AIK      S++   +  E+ +      +N I++Y G   
Sbjct: 17  GKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRN-IVQYLGSDS 75

Query: 268 CGDSDCFVLEHVKHDRPEVLKK------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVK 321
                   +E V       L +      + +   + +Y   +   L  LH   IVHRD+K
Sbjct: 76  ENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIK 135

Query: 322 PGNFL 326
             N L
Sbjct: 136 GDNVL 140

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 18/173 (10%)

Query: 203 FIVEEEEGSGGYGTVYRARRK--NDGTVVAIKCPHANASKHYVSN----ELRMLERFGG- 255
           + + +E G G YG V  AR    ++   VAIK      SK  ++     EL++L  F G 
Sbjct: 2   YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGH 61

Query: 256 KNF--IIKYEGCFKCGDSDCFVLEH-VKHDRPEVLKKEIDLS--QLQWYGYCLFRALASL 310
           KN   +   +  F    ++ ++ E  ++ D  ++++    L+    Q + Y +   L  +
Sbjct: 62  KNITCLYDMDIVFPGNFNELYLYEELMEADLHQIIRSGQPLTDAHFQSFIYQILCGLKYI 121

Query: 311 HKQGIVHRDVKPGNFLFS--CKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYV 361
           H   ++HRD+KPGN L +  C+ +K  + DF LA  GF  +  +     T+YV
Sbjct: 122 HSANVLHRDLKPGNLLVNADCE-LK--ICDFGLAR-GFSENPGENAGFMTEYV 170

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 35/137 (25%), Positives = 49/137 (35%), Gaps = 36/137 (26%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APE + +      K DIWS G++L+ L  GR P+   P +N            
Sbjct: 160 VGTSSYMAPERI-QGNDYSVKSDIWSLGLSLIELATGRFPY---PPENDPPDGIF----- 210

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                          E L    + PP  LP                     D V+ CL  
Sbjct: 211 ---------------ELLQYIVNEPPPRLPS------------GKFSPDFQDFVNLCLIK 243

Query: 672 NPRLRISAEDALKHEFF 688
           +PR R S ++ L+H F 
Sbjct: 244 DPRERPSYKELLEHPFI 260

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 21/139 (15%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG--DPEQNIKDIAKLRGS--EDL 612
           +R P+VL  S      LD+W  G   + ++ G   F G  D +  ++ I  + G+  ED 
Sbjct: 169 YRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDT 228

Query: 613 WEVAKLHNRESSFPE--DLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
           W    +H+     PE   LY+ K+L       W KL            +   DL  K L 
Sbjct: 229 W--PGVHSLPHFKPERFTLYSPKNLRQ----AWNKL---------SYVNHAEDLASKLLQ 273

Query: 671 VNPRLRISAEDALKHEFFA 689
             P+ R+SA+ AL HE+F+
Sbjct: 274 CFPKNRLSAQAALSHEYFS 292

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 9/136 (6%)

Query: 559 APEVLFRSQH-QGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAK 617
           +PEVL ++      K DI+S G+T   L  G  PF  D       + K+RG+     V  
Sbjct: 176 SPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFK-DMPATQMLLEKVRGT-----VPC 229

Query: 618 LHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI 677
           L ++ +    +   ++S      P      +    +           V+ CL  +P  R 
Sbjct: 230 LLDKSTYPLYEDSMSQSRSSNEHP--NNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRP 287

Query: 678 SAEDALKHEFFAPCHE 693
           SA   L H FF  C  
Sbjct: 288 SASQLLNHSFFKQCKR 303

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 46.2 bits (109), Expect = 4e-05
 Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 27/155 (17%)

Query: 550 PCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR-------------TPFFGDP 596
           P   T  +RAPE+L  ++H    +DIW+ G     L+                 PF  D 
Sbjct: 174 PVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQ 233

Query: 597 EQNIKDIAKLRGSEDLWEVAKLHNR---ESSFPEDLYAAKSLPPINLPEWCKLITKRPDF 653
              I  +      +D  ++ K+      +  F    YA  SL  I   E  K+   +PD 
Sbjct: 234 LDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSL--IKYMEKHKV---KPD- 287

Query: 654 LEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
                S +F L+ K LT++P  RI++E AL+  +F
Sbjct: 288 -----SKVFLLLQKLLTMDPTKRITSEQALQDPYF 317

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 34/141 (24%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK---CPHANASKHY---------VSNELRMLERFGGKN 257
           G G YG VY A     G ++A+K    P   A +H          + +E+  L+     N
Sbjct: 10  GKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLN 69

Query: 258 FIIKYEGCFKCGDSDCFVLEHV----------KHDR--PEVLKKEIDLSQLQWYGYCLFR 305
            I++Y G     +     LE+V           + R   ++++     ++    G     
Sbjct: 70  -IVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRF---FTEQVLEG----- 120

Query: 306 ALASLHKQGIVHRDVKPGNFL 326
            LA LH +GI+HRD+K  N L
Sbjct: 121 -LAYLHSKGILHRDLKADNLL 140

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 47/143 (32%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
           AGT    APEVL R ++   K DIWSAG+ L  ++   +  F DP    ++  K   S  
Sbjct: 217 AGTVETNAPEVLARDKYNS-KADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHL 275

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLI----TKRPDFLEV-IPSSLFDLVD 666
           L  ++ L      FP D     S       E+  L     T+ P F  V +P     LV 
Sbjct: 276 LKIISTLKVHPEEFPRD---PGSRLVRGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVH 332

Query: 667 KCLTVNPRLRISAEDALKHEFFA 689
           K LT +  +R SAE+ L +  FA
Sbjct: 333 KMLTFDAAMRPSAEEILNYPMFA 355

Length = 357

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 40/138 (28%)

Query: 552 AGTKGFRAPEVLF--RSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGS 609
           AGT  + APEV+   + +  G   DIWS G  +L +  G+ P+    E            
Sbjct: 164 AGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPW---SEL----------- 209

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           ++ +++   H            A   PPI            PD L++ P    D +D+CL
Sbjct: 210 DNEFQIM-FH----------VGAGHKPPI------------PDSLQLSPEGK-DFLDRCL 245

Query: 670 TVNPRLRISAEDALKHEF 687
             +P+ R +A + L+H F
Sbjct: 246 ESDPKKRPTASELLQHPF 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 26/148 (17%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGS--EDLW 613
           +R P++L  S     ++D+W  G     +  GR  F G   E+ +  I ++ G+  E+ W
Sbjct: 170 YRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETW 229

Query: 614 EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEV----IPSSLFDLVDKCL 669
               L N E                N P++      R D L      + S   +L+ K L
Sbjct: 230 P-GILSNEE------------FKSYNYPKY------RADCLHNHAPRLDSDGAELLSKLL 270

Query: 670 TVNPRLRISAEDALKHEFFAPCHEMLRK 697
               R RISAE+A+KH +F    E + K
Sbjct: 271 QFEGRKRISAEEAMKHPYFHCLGERIHK 298

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 40/139 (28%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APEV+ R  + G ++DIWS G+ ++ ++ G  P+F +P   ++ + ++R +   
Sbjct: 177 GTPYWMAPEVISRLPY-GTEVDIWSLGIMVIEMVDGEPPYFNEPP--LQAMKRIRDNL-- 231

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
                        P  L     + P                       L   +D+ L  +
Sbjct: 232 -------------PPKLKNLHKVSPR----------------------LRSFLDRMLVRD 256

Query: 673 PRLRISAEDALKHEFFAPC 691
           P  R +A + L H F A  
Sbjct: 257 PAQRATAAELLNHPFLAKA 275

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 44.9 bits (107), Expect = 7e-05
 Identities = 36/135 (26%), Positives = 52/135 (38%), Gaps = 38/135 (28%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + +PE   + +      DIWS G+TLL   +G+ PF                    
Sbjct: 162 GTVTYMSPE-RIQGESYSYAADIWSLGLTLLECALGKFPF-------------------- 200

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
                L   + SF E + A    PP +LP         P+F         D +  CL  +
Sbjct: 201 -----LPPGQPSFFELMQAICDGPPPSLPA----EEFSPEFR--------DFISACLQKD 243

Query: 673 PRLRISAEDALKHEF 687
           P+ R SA + L+H F
Sbjct: 244 PKKRPSAAELLQHPF 258

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 45.4 bits (107), Expect = 7e-05
 Identities = 43/155 (27%), Positives = 59/155 (38%), Gaps = 37/155 (23%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG--------DPEQNIKDI 603
           AGT    APE+L R  + GP +DIWSAG+ L  +       F         D ++ IK I
Sbjct: 244 AGTIATNAPELLARDPY-GPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLI 302

Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPE----WCKLITKRPDF------ 653
            +  G+             + FP D          NL E      K  +++P        
Sbjct: 303 IRRSGTH-----------PNEFPID-------AQANLDEIYIGLAKKSSRKPGSRPLWTN 344

Query: 654 LEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
           L  +P  L  L+ K L  +   R SAE  L    F
Sbjct: 345 LYELPIDLEYLICKMLAFDAHHRPSAEALLDFAAF 379

Length = 391

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 45.0 bits (106), Expect = 7e-05
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 9/139 (6%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--VSNELRMLERFGGKNFIIKYEGCFK 267
           GSG YG VY+AR  + G + A+K         +  +  E+ M++     N I+ Y G + 
Sbjct: 18  GSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCN-IVAYFGSYL 76

Query: 268 CGDSDCFVLEHVKHDR-PEVLKKEIDLSQLQWYGYC--LFRALASLHKQGIVHRDVKPGN 324
             +     +E+       ++      LS+LQ    C    + LA LH +G +HRD+K  N
Sbjct: 77  SREKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGAN 136

Query: 325 FLFSCKA-VKGYLIDFNLA 342
            L +    VK  L DF +A
Sbjct: 137 ILLTDNGDVK--LADFGVA 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 44.5 bits (106), Expect = 8e-05
 Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 54/144 (37%)

Query: 551 CAGTKGFRAPEVLFRSQHQGP--KLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRG 608
             GT  + APEV+   +  G     DIWS G T++ L+ G  P++               
Sbjct: 159 VVGTPYWMAPEVI---EMSGASTASDIWSLGCTVIELLTGNPPYY--------------- 200

Query: 609 SEDLWEVAKLH----NRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL 664
             DL  +A L     +     PE +               K      DFL          
Sbjct: 201 --DLNPMAALFRIVQDDHPPLPEGISPE-----------LK------DFLM--------- 232

Query: 665 VDKCLTVNPRLRISAEDALKHEFF 688
             +C   +P LR +A+  LKH + 
Sbjct: 233 --QCFQKDPNLRPTAKQLLKHPWI 254

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 17/146 (11%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-----NELRMLERFGGKNFIIKYEG 264
           G G YG V  A+       VAIK   ANA  + +       E+++L     +N +I  + 
Sbjct: 14  GRGAYGIVCSAKNSETNEKVAIK-KIANAFDNRIDAKRTLREIKLLRHLDHEN-VIAIKD 71

Query: 265 CFKCGDSDCF-----VLEHVKHDRPEVLKKEIDLS--QLQWYGYCLFRALASLHKQGIVH 317
                  + F     V E +  D  ++++    LS    Q++ Y L R L  +H   ++H
Sbjct: 72  IMPPPHREAFNDVYIVYELMDTDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANVLH 131

Query: 318 RDVKPGNFLFSCKA-VKGYLIDFNLA 342
           RD+KP N L +    +K  + DF LA
Sbjct: 132 RDLKPSNLLLNANCDLK--ICDFGLA 155

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 44.6 bits (105), Expect = 9e-05
 Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 18/151 (11%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKC--PHANASKHYVSNELRMLERFGGKNFIIKYEG 264
           E  G G YG VY+   K DG++ A+K   P ++  +  +  E  +L+       ++K+ G
Sbjct: 28  ETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEE-IEAEYNILQSLPNHPNVVKFYG 86

Query: 265 CF----KC-GDSDCFVLEHVKHDR-PEVLK------KEIDLSQLQWYGYCLFRALASLHK 312
            F    K  G     VLE        E++K      + +D + + +  Y     L  LH 
Sbjct: 87  MFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHN 146

Query: 313 QGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             I+HRDVK  N L + +  VK  L+DF ++
Sbjct: 147 NRIIHRDVKGNNILLTTEGGVK--LVDFGVS 175

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 33/136 (24%), Positives = 48/136 (35%), Gaps = 30/136 (22%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + +PE + +      K D+WS G++++ L +G+ P F     +        G  DL
Sbjct: 164 GTSTYMSPERI-QGGKYTVKSDVWSLGISIIELALGKFP-FAFSNIDDDGQDDPMGILDL 221

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
                           L      PP  LP          DF    P  L D VD CL  +
Sbjct: 222 ----------------LQQIVQEPPPRLPS--------SDF----PEDLRDFVDACLLKD 253

Query: 673 PRLRISAEDALKHEFF 688
           P  R + +       F
Sbjct: 254 PTERPTPQQLCAMPPF 269

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 44.7 bits (105), Expect = 9e-05
 Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 10/174 (5%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPH--ANASKHYVSNELRMLERFGGKNFIIKYEG 264
           E+ G G  GTVY A     G  VAIK  +      K  + NE+ ++      N I+ Y  
Sbjct: 25  EKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPN-IVNYLD 83

Query: 265 CFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQGIVHRDVKP 322
            +  GD    V+E++       +  E  + + Q    C    +AL  LH   ++HRD+K 
Sbjct: 84  SYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKS 143

Query: 323 GNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTKY--VPPVNGRKVPSAK 373
            N L     +VK  L DF            ++T+ GT Y   P V  RK    K
Sbjct: 144 DNILLGMDGSVK--LTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPK 195

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 48/151 (31%), Positives = 69/151 (45%), Gaps = 27/151 (17%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHAN---ASKHYVSNELRMLERFGGKNFIIKYE 263
           GSG YG V  A     G  VAIK    P  +   A + Y   ELR+L+    +N +I   
Sbjct: 24  GSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTY--RELRLLKHMDHEN-VIGLL 80

Query: 264 GCFKCGDS-----DCFVLEH-VKHDRPEVLKKEIDLS--QLQWYGYCLFRALASLHKQGI 315
             F    S     D +++ H +  D   ++K +  LS   +Q+  Y + R L  +H  GI
Sbjct: 81  DVFTPASSLEDFQDVYLVTHLMGADLNNIVKCQK-LSDDHIQFLVYQILRGLKYIHSAGI 139

Query: 316 VHRDVKPGNFLFSCKAVKG----YLIDFNLA 342
           +HRD+KP N      AV       ++DF LA
Sbjct: 140 IHRDLKPSNI-----AVNEDCELKILDFGLA 165

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE----QNIKD 602
           GT  + APE+L   Q  GP +D W+ GV L  ++ G++PF GD E    Q+I +
Sbjct: 158 GTPDYIAPEIL-SYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSILE 210

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 50/171 (29%), Positives = 71/171 (41%), Gaps = 14/171 (8%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKY 262
           E+ G G  GTVY A     G  VAIK    N      K  + NE+ ++      N I+ Y
Sbjct: 25  EKIGQGASGTVYTAIDVATGQEVAIK--QMNLQQQPKKELIINEILVMRENKHPN-IVNY 81

Query: 263 EGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQGIVHRDV 320
              +  GD    V+E++       +  E  + + Q    C    +AL  LH   ++HRD+
Sbjct: 82  LDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDI 141

Query: 321 KPGNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTKY--VPPVNGRK 368
           K  N L     +VK  L DF            ++T+ GT Y   P V  RK
Sbjct: 142 KSDNILLGMDGSVK--LTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK 190

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 282 DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQ------GIVHRDVKPGNFLFSCKAVKGY 335
                L++ +    L        R LA+L          +VH D+ PGN L         
Sbjct: 128 QLAAALRRLVAAELLDRLAELWERLLAALLALLPALPLVLVHGDLHPGNLLVDPGGRVTG 187

Query: 336 LIDFNLAMVG 345
           +IDF  A +G
Sbjct: 188 VIDFEDAGLG 197

This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881. Length = 238

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 21/152 (13%)

Query: 550 PCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR-------------TPFFGDP 596
           P   T  +RAPE+L  ++H    +DIW+ G     L+                 P+  D 
Sbjct: 174 PVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQ 233

Query: 597 EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEV 656
              I ++      +D WE  K     S+  +D +   +    +L ++ +    +PD    
Sbjct: 234 LDRIFNVMGFPADKD-WEDIKKMPEHSTLMKD-FRRNTYTNCSLIKYMEKHKVKPD---- 287

Query: 657 IPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
             S  F L+ K LT++P  RI++E A++  +F
Sbjct: 288 --SKAFHLLQKLLTMDPIKRITSEQAMQDPYF 317

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 16/133 (12%)

Query: 207 EEEGSGGYGTV--YRARRKNDGT--VVAIKCPHANASKHYVSN---ELRMLERFGGKNFI 259
              G G +G V  Y     NDGT  +VA+K       +   S    E+ +L+    +N I
Sbjct: 10  RVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHEN-I 68

Query: 260 IKYEGCFKCGD----SDCFVLEHVKHD--RPEVLKKEIDLSQLQWYGYCLFRALASLHKQ 313
           +KY+GC  C +        ++E+V     R  + K +++L+QL  +   +   +A LH Q
Sbjct: 69  VKYKGC--CSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQ 126

Query: 314 GIVHRDVKPGNFL 326
             +HRD+   N L
Sbjct: 127 HYIHRDLAARNVL 139

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 22/141 (15%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--VSNELRMLERFGGKNF 258
           E F + +  GSG YG VY+AR  N G + AIK       + +  V  E+ M++     N 
Sbjct: 9   EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSN- 67

Query: 259 IIKYEGCF-----------KCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRAL 307
           I+ Y G +            CG      + HV     E        SQ+ +      + L
Sbjct: 68  IVAYFGSYLRRDKLWICMEFCGGGSLQDIYHVTGPLSE--------SQIAYVSRETLQGL 119

Query: 308 ASLHKQGIVHRDVKPGNFLFS 328
             LH +G +HRD+K  N L +
Sbjct: 120 YYLHSKGKMHRDIKGANILLT 140

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 42/140 (30%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD-PEQNIKDIAKLRGSED 611
           GT  + APEV+ R+ + G ++DIWS G+ ++ ++ G  P+F D P Q +K   +LR S  
Sbjct: 179 GTPYWMAPEVISRTPY-GTEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMK---RLRDSP- 233

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                         P  L  A  + P+                      L D +++ LT 
Sbjct: 234 --------------PPKLKNAHKISPV----------------------LRDFLERMLTR 257

Query: 672 NPRLRISAEDALKHEFFAPC 691
            P+ R +A++ L H F    
Sbjct: 258 EPQERATAQELLDHPFLLQT 277

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 10/135 (7%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVSNELRMLERFGGKNFIIKYEGCF 266
           GSG  GTVY+   +  G + A+K     H +  +  +  E+ +L      N ++K    F
Sbjct: 83  GSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPN-VVKCHDMF 141

Query: 267 KCGDSDCFVLEHVKHDRPEVLKKEI-DLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNF 325
                   +LE +  D   +    I D   L      +   +A LH++ IVHRD+KP N 
Sbjct: 142 DHNGEIQVLLEFM--DGGSLEGTHIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNL 199

Query: 326 LF-SCKAVKGYLIDF 339
           L  S K VK  + DF
Sbjct: 200 LINSAKNVK--IADF 212

Length = 353

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 19/146 (13%)

Query: 202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIK------CPHANASKHYVSNELRMLERFGG 255
           +F +E++ G G +  VYRA    DG  VA+K         A A    +  E+ +L++   
Sbjct: 3   NFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCI-KEIDLLKQLNH 61

Query: 256 KNFIIKYEGCFKCGDSDCFVLE---------HVKHDRPEVLKKEIDLSQLQWYGYCLFRA 306
            N +IKY   F   +    VLE          +KH + +  K+ I    +  Y   L  A
Sbjct: 62  PN-VIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQ--KRLIPEKTVWKYFVQLCSA 118

Query: 307 LASLHKQGIVHRDVKPGNFLFSCKAV 332
           L  +H + ++HRD+KP N   +   V
Sbjct: 119 LEHMHSRRVMHRDIKPANVFITATGV 144

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 550 PCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRG 608
           P   T+ +RAPEV+    ++   +DIWS G  +  L+ G   F G D       + +  G
Sbjct: 181 PYVVTRYYRAPEVILGMGYK-ENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLG 239

Query: 609 SEDLWEVAKLHNRESSFPEDLYAAKSLPPINL-PEWCKLITKRPDFLEVIPSSLFDLVDK 667
           +     + +L     ++ E+      +    L P+W        D L+   S   DL+ K
Sbjct: 240 TPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKT--SQARDLLSK 297

Query: 668 CLTVNPRLRISAEDALKHEF 687
            L ++P  RIS ++AL+H +
Sbjct: 298 MLVIDPDKRISVDEALRHPY 317

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 11/127 (8%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASK-----HYVSNELRMLERFGGKNFIIKYEG 264
           G GG+G V   + K  G + A K       K         NE ++LE+   + FI+    
Sbjct: 2   GKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSR-FIVSLAY 60

Query: 265 CFKCGDSDCFVLE-----HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRD 319
            F+  D  C V+       +K+    V +     ++  +Y   +   L  LH++ IV+RD
Sbjct: 61  AFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRD 120

Query: 320 VKPGNFL 326
           +KP N L
Sbjct: 121 LKPENVL 127

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 50/169 (29%), Positives = 72/169 (42%), Gaps = 17/169 (10%)

Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEG 264
           E G+G  G V + + K  G ++A K  H     A ++ +  EL++L       +I+ + G
Sbjct: 12  ELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSP-YIVGFYG 70

Query: 265 CFKCGDSDCFVLEHVKHDR-PEVLK--KEIDLSQLQWYGYCLFRALASL-HKQGIVHRDV 320
            F         +EH+      +VLK  K I    L      + R LA L  K  I+HRDV
Sbjct: 71  AFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDV 130

Query: 321 KPGNFLFSCK--------AVKGYLID-FNLAMVGFDGSFNQATLPGTKY 360
           KP N L + +         V G LID    + VG     +   L GT Y
Sbjct: 131 KPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHY 179

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 15/147 (10%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS----NELRMLERFGGKNFIIKYEGC 265
           G G +G V++AR K    +VA+K       K         E+++L+    +N +   E C
Sbjct: 21  GQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEIC 80

Query: 266 F-------KCGDSDCFVLEHVKHDRPEVL---KKEIDLSQLQWYGYCLFRALASLHKQGI 315
                   +   S   V E  +HD   +L     +  LS+++     L   L  +H+  I
Sbjct: 81  RTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKI 140

Query: 316 VHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           +HRD+K  N L +   +   L DF LA
Sbjct: 141 LHRDMKAANILITKDGILK-LADFGLA 166

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 18/150 (12%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK---CPHANASKHYVSNELRMLERFGGKNFIIKYEGCF 266
           G G  G V+ A   +    VA+K        + KH +  E++++ R    N +  YE   
Sbjct: 14  GCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHAL-REIKIIRRLDHDNIVKVYEVLG 72

Query: 267 KCG-------------DSDCFVLEHVKHDRPEVLKK-EIDLSQLQWYGYCLFRALASLHK 312
             G             +S   V E+++ D   VL++  +     + + Y L R L  +H 
Sbjct: 73  PSGSDLTEDVGSLTELNSVYIVQEYMETDLANVLEQGPLSEEHARLFMYQLLRGLKYIHS 132

Query: 313 QGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
             ++HRD+KP N   + + +   + DF LA
Sbjct: 133 ANVLHRDLKPANVFINTEDLVLKIGDFGLA 162

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 39/150 (26%), Positives = 52/150 (34%), Gaps = 44/150 (29%)

Query: 544 KQKKDGPCAGTKGFRAPEVL----FRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN 599
            QK+D    GT  + APEV+    F+      K DIWS G+TL+ L     P        
Sbjct: 157 LQKRD-TFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPP-------- 207

Query: 600 IKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS 659
                              H+  +     L   KS PP        L            S
Sbjct: 208 -------------------HHELNPMRVLLKILKSEPP-------TLDQPS-----KWSS 236

Query: 660 SLFDLVDKCLTVNPRLRISAEDALKHEFFA 689
           S  D +  CL  +P  R +A + LKH F +
Sbjct: 237 SFNDFLKSCLVKDPDDRPTAAELLKHPFVS 266

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 10/143 (6%)

Query: 190 DQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP--HANASKHYVSNEL 247
           DQ + + L   E++I   + G G  G V  AR K+ G  VA+K         +  + NE+
Sbjct: 15  DQGDPRSL--LENYI---KIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEV 69

Query: 248 RMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC--LFR 305
            ++  +  +N +  Y+  +  G+    ++E ++      +  +  L++ Q    C  + +
Sbjct: 70  VIMRDYQHQNVVEMYKS-YLVGEELWVLMEFLQGGALTDIVSQTRLNEEQIATVCESVLQ 128

Query: 306 ALASLHKQGIVHRDVKPGNFLFS 328
           AL  LH QG++HRD+K  + L +
Sbjct: 129 ALCYLHSQGVIHRDIKSDSILLT 151

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 25/167 (14%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANAS------KHYVSNELRMLERFGGKNFIIKYE 263
           G G +G     RR  D ++V  K    N +      +    NE+ +L      N II Y 
Sbjct: 9   GKGAFGEATLYRRTEDDSLVVWK--EVNLTRLSEKERRDALNEIVILSLLQHPN-IIAYY 65

Query: 264 GCFKCGDSDCFVLEH---------VKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQG 314
             F   ++    +E+         +   + ++ ++E     + WY + +  A++ +HK G
Sbjct: 66  NHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEE----MVLWYLFQIVSAVSYIHKAG 121

Query: 315 IVHRDVKPGN-FLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
           I+HRD+K  N FL     +K  L DF ++ +         T+ GT Y
Sbjct: 122 ILHRDIKTLNIFLTKAGLIK--LGDFGISKILGSEYSMAETVVGTPY 166

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 49/174 (28%), Positives = 72/174 (41%), Gaps = 10/174 (5%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIK--CPHANASKHYVSNELRMLERFGGKNFIIKYEG 264
           E+ G G  GTV+ A     G  VAIK         K  + NE+ +++     N I+ +  
Sbjct: 25  EKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPN-IVNFLD 83

Query: 265 CFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQGIVHRDVKP 322
            F  GD    V+E++       +  E  + + Q    C    +AL  LH   ++HRD+K 
Sbjct: 84  SFLVGDELFVVMEYLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKS 143

Query: 323 GNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTKY--VPPVNGRKVPSAK 373
            N L     +VK  L DF            ++T+ GT Y   P V  RK    K
Sbjct: 144 DNVLLGMDGSVK--LTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPK 195

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 540 LGNGKQKKDGPC----AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD 595
           LG   + KDG      AGT G+ APE+L    +  P +D ++ G ++  ++ GRTPF   
Sbjct: 139 LGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYP-VDWFAMGCSIYEMVAGRTPFKDH 197

Query: 596 PEQNIKDIAKLRGSED 611
            E+  K+  K R  ED
Sbjct: 198 KEKVAKEELKRRTLED 213

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 14/150 (9%)

Query: 204 IVEEEEGSGGYGTVYRARRKNDGTVVA---IKCPHANASKHYVSNELRMLERFGGKNFII 260
            V +E G G YG+VY+   +  G  +A   I+     +  + +  EL +L +     +I+
Sbjct: 4   EVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHK-AVSPYIV 62

Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKE------IDLSQLQWYGYCLFRALASLHKQ- 313
            + G F    +    +E++     + L         I    L+   Y + + L  L ++ 
Sbjct: 63  DFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEH 122

Query: 314 GIVHRDVKPGNFLFSCKA-VKGYLIDFNLA 342
            I+HRDVKP N L +    VK  L DF ++
Sbjct: 123 NIIHRDVKPTNVLVNGNGQVK--LCDFGVS 150

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 13/146 (8%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGKNFIIKY 262
           E+ G G YG VY+ R K  G +VA+K     + +  V +    E+ +L+     N I+  
Sbjct: 6   EKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPN-IVCL 64

Query: 263 EGCFKCGDSDCFVLEHVKHDRPEVLK-----KEIDLSQLQWYGYCLFRALASLHKQGIVH 317
           +           + E +  D  + L      + +D   ++ Y Y + + +   H + ++H
Sbjct: 65  QDVLMQESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLH 124

Query: 318 RDVKPGNFLFSCK-AVKGYLIDFNLA 342
           RD+KP N L   K  +K  L DF LA
Sbjct: 125 RDLKPQNLLIDNKGVIK--LADFGLA 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 17/146 (11%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT+ + +PE L +  H   + DIWS G++L+ L IGR P    P  + K++  + G   +
Sbjct: 164 GTRSYMSPERL-QGTHYSVQSDIWSMGLSLVELAIGRYPI---PPPDAKELEAIFGRPVV 219

Query: 613 -WEVAKLHN-----RESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF---- 662
             E  + H+     R    P   +   S P + + E    I   P     +P+ +F    
Sbjct: 220 DGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPP--PKLPNGVFTPDF 277

Query: 663 -DLVDKCLTVNPRLRISAEDALKHEF 687
            + V+KCL  NP  R   +  + H F
Sbjct: 278 QEFVNKCLIKNPAERADLKMLMNHTF 303

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 40/137 (29%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APE++ R  + GP++DIWS G+ ++ ++ G  P+F +P   +K +  +R     
Sbjct: 178 GTPYWMAPELISRLPY-GPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIR----- 229

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
                                +LPP            +   L  +  SL   +D+ L  +
Sbjct: 230 --------------------DNLPP------------KLKNLHKVSPSLKGFLDRLLVRD 257

Query: 673 PRLRISAEDALKHEFFA 689
           P  R +A + LKH F A
Sbjct: 258 PAQRATAAELLKHPFLA 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 37/144 (25%), Positives = 53/144 (36%), Gaps = 47/144 (32%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGS 609
             GT+ + APEV+    H G  +D W+ G+ LLY M+ G TPF G               
Sbjct: 192 FVGTEEYIAPEVISGDGH-GSAVDWWTLGI-LLYEMLYGTTPFKG--------------- 234

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
                     NR+ +F   L        +  P               + SS  DL+ K L
Sbjct: 235 ---------SNRDETFSNILKK-----EVTFPG-----------SPPVSSSARDLIRKLL 269

Query: 670 TVNPRLRI----SAEDALKHEFFA 689
             +P  R+     A +  +H FF 
Sbjct: 270 VKDPSKRLGSKRGAAEIKQHPFFR 293

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 19/150 (12%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKH----YVSNELRMLERFGGKNFIIKYEGC 265
           G G YG VY+AR K+ G +VA+K    +  K         E+++L +   +N +   E  
Sbjct: 16  GEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIV 75

Query: 266 FKCGDSDCF---------VLEHVKHDRPEVLK-KEIDLS--QLQWYGYCLFRALASLHKQ 313
               D+  F         V E++ HD   +L+   +  S   ++ +   L   L   HK+
Sbjct: 76  TDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKK 135

Query: 314 GIVHRDVKPGNFLFSCKA-VKGYLIDFNLA 342
             +HRD+K  N L + K  +K  L DF LA
Sbjct: 136 NFLHRDIKCSNILLNNKGQIK--LADFGLA 163

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 38/138 (27%), Positives = 51/138 (36%), Gaps = 47/138 (34%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APEV+ +S +   K DIWS G+T + L  G  P                     
Sbjct: 160 GTPFWMAPEVIKQSGYDE-KADIWSLGITAIELAKGEPPL-------------------- 198

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKR-PDFLE--VIPSSLFDLVDKCL 669
                          DL+  + L          LI K  P  LE         D V  CL
Sbjct: 199 --------------SDLHPMRVL---------FLIPKNNPPSLEGNKFSKPFKDFVSLCL 235

Query: 670 TVNPRLRISAEDALKHEF 687
             +P+ R SA++ LKH+F
Sbjct: 236 NKDPKERPSAKELLKHKF 253

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 48/169 (28%), Positives = 65/169 (38%), Gaps = 64/169 (37%)

Query: 210 GSGGYGTVYRARR---KNDGTVVAIKC-------------PHANAS-------KHYVSNE 246
           G GGYG V++ R+    + G + A+K               H  A        KH    +
Sbjct: 5   GKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVD 64

Query: 247 LRMLERFGGKNFII-------------KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL 293
           L    + GGK ++I             + EG F   D+ CF L             EI L
Sbjct: 65  LIYAFQTGGKLYLILEYLSGGELFMHLEREGIF-MEDTACFYL------------SEISL 111

Query: 294 SQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNL 341
                       AL  LH+QGI++RD+KP N L   +  VK  L DF L
Sbjct: 112 ------------ALEHLHQQGIIYRDLKPENILLDAQGHVK--LTDFGL 146

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 18/167 (10%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEG 264
           G G +G V  A  K    V AIK    +             E R+L       F+     
Sbjct: 4   GKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHC 63

Query: 265 CFKCGDSDCFVLEHVKH-DRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVK 321
           CF+  D   FV+E+V   D    +++  + D  + ++Y   +  AL  LH+ G+++RD+K
Sbjct: 64  CFQTKDRLFFVMEYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLK 123

Query: 322 PGNFLFS----CKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
             N L      CK     L DF +   G        T  GT  Y+ P
Sbjct: 124 LDNILLDAEGHCK-----LADFGMCKEGILNGVTTTTFCGTPDYIAP 165

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 17/130 (13%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK----CPHANASKHYVS---NELRMLERFGGKNFIIKY 262
           G G +G VY     + G  +A+K     P +  +K  V+    E+++L+       I++Y
Sbjct: 11  GQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQ-HERIVQY 69

Query: 263 EGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQ--LQWYGYCLFRALASLHKQGIV 316
            GC +  ++    +E++      D+   LK    L++   + Y   +   +  LH   IV
Sbjct: 70  YGCLRDDETLSIFMEYMPGGSVKDQ---LKAYGALTETVTRKYTRQILEGVEYLHSNMIV 126

Query: 317 HRDVKPGNFL 326
           HRD+K  N L
Sbjct: 127 HRDIKGANIL 136

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 34/144 (23%), Positives = 49/144 (34%), Gaps = 46/144 (31%)

Query: 549 GPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN----IKDIA 604
           G   GT  F APEVL R +  G   D+WS G  ++ +   + P+  +   N    I  IA
Sbjct: 166 GQLLGTIAFMAPEVL-RGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIA 224

Query: 605 KLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL 664
               +  +             PE L                     P         L D+
Sbjct: 225 SATTAPSI-------------PEHL--------------------SPG--------LRDV 243

Query: 665 VDKCLTVNPRLRISAEDALKHEFF 688
             +CL + P  R  + + LKH  F
Sbjct: 244 TLRCLELQPEDRPPSRELLKHPVF 267

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 42.1 bits (100), Expect = 5e-04
 Identities = 32/136 (23%), Positives = 46/136 (33%), Gaps = 46/136 (33%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK--LRG 608
             GT  + +PE L +++    K DIWS G  L  L   + PF G+   N+ ++A   L+G
Sbjct: 163 VVGTPYYLSPE-LCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGE---NLLELALKILKG 218

Query: 609 SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC 668
                                      PPI                    S L +LV   
Sbjct: 219 -------------------------QYPPIP---------------SQYSSELRNLVSSL 238

Query: 669 LTVNPRLRISAEDALK 684
           L  +P  R S    L+
Sbjct: 239 LQKDPEERPSIAQILQ 254

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 42/146 (28%)

Query: 544 KQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDI 603
           +Q K     GT  + APEV+ R  + GPK+DIWS G+  + ++ G  P+  +        
Sbjct: 169 EQSKRSTMVGTPYWMAPEVVTRKAY-GPKVDIWSLGIMAIEMIEGEPPYLNE-------- 219

Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF- 662
             LR    L+ +A     E   PE L                             S++F 
Sbjct: 220 NPLRA---LYLIATNGTPELQNPEKL-----------------------------SAIFR 247

Query: 663 DLVDKCLTVNPRLRISAEDALKHEFF 688
           D +++CL ++   R SA++ L+H+F 
Sbjct: 248 DFLNRCLDMDVEKRGSAKELLQHQFL 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 49/174 (28%), Positives = 72/174 (41%), Gaps = 10/174 (5%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPH--ANASKHYVSNELRMLERFGGKNFIIKYEG 264
           E+ G G  GTVY A     G  VAI+  +      K  + NE+ ++      N I+ Y  
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN-IVNYLD 84

Query: 265 CFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQGIVHRDVKP 322
            +  GD    V+E++       +  E  + + Q    C    +AL  LH   ++HRD+K 
Sbjct: 85  SYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKS 144

Query: 323 GNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTKY--VPPVNGRKVPSAK 373
            N L     +VK  L DF            ++T+ GT Y   P V  RK    K
Sbjct: 145 DNILLGMDGSVK--LTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPK 196

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 306 ALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGF----DGSFNQATLPGTKY 360
           A+ ++HK G +HRD+KP N L      +K  L DF L+  GF    D ++ Q  L G   
Sbjct: 113 AIEAVHKLGFIHRDIKPDNILIDRGGHIK--LSDFGLST-GFHKQHDSAYYQKLLQGKSN 169

Query: 361 VPPVNGRK 368
              ++ R 
Sbjct: 170 KNRIDNRN 177

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 26/157 (16%)

Query: 201 ESFIVEEEEGSGGYGTVYRAR-----RKNDGTVVAIKC---PHANASKHYVSNELRMLER 252
           ++ +++ E G G +G V+         +ND  +VA+K      +N ++     E  +L  
Sbjct: 5   DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTN 64

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKH-DRPEVLK----------------KEIDLSQ 295
           F  +N I+K+ G    GD    V E+++H D  + L+                 E+ LSQ
Sbjct: 65  FQHEN-IVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQ 123

Query: 296 LQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV 332
           L      +   +  L  Q  VHRD+   N L     V
Sbjct: 124 LLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLV 160

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 29/165 (17%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKN--DGTVVAIKCPHANASKHYVS------NELRML 250
             E  I     G G YG VY+A+RKN  DG   AIK    +  + Y         E+ +L
Sbjct: 3   EIEGCI-----GRGTYGRVYKAKRKNGKDGKEYAIKKFKGD-KEQYTGISQSACREIALL 56

Query: 251 ERFGGKNFIIKYEGCFKCGDSDCF-VLEHVKHDRPEVLK-------KEIDLSQLQWYGYC 302
                +N +   E   +  D   + + ++ +HD  +++K         I  S ++   + 
Sbjct: 57  RELKHENVVSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQ 116

Query: 303 LFRALASLHKQGIVHRDVKPGNFL-----FSCKAVKGYLIDFNLA 342
           +   +  LH   ++HRD+KP N L          VK  + D  LA
Sbjct: 117 ILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVK--IGDLGLA 159

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 19/177 (10%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKN 257
           + F    E G+G  G V +   +  G ++A K  H     A ++ +  EL++L       
Sbjct: 1   DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSP- 59

Query: 258 FIIKYEGCFKCGDSDCFVLEHVKHDRPE-VLKK--EIDLSQLQWYGYCLFRALASLH-KQ 313
           +I+ + G F         +EH+     + VLKK   I  + L      + R L  L  K 
Sbjct: 60  YIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKH 119

Query: 314 GIVHRDVKPGNFLFS----CK----AVKGYLIDFNLA--MVGFDGSFNQATLPGTKY 360
            I+HRDVKP N L +     K     V G LID ++A   VG     +   L GT Y
Sbjct: 120 KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID-SMANSFVGTRSYMSPERLQGTHY 175

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 26/168 (15%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLE--RFGGKNFIIKYEGCFK 267
           G G  G+V + R KN G + A+K    + +       LR LE  +     +I+KY G F 
Sbjct: 10  GEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAF- 68

Query: 268 CGDSDCFV---LEHVKHDRPEVLKKEIDLSQ--------LQWYGYCLFRALASLHKQGIV 316
             +S   +   +E+ +    + + K++   +        L      + + L+ LH + I+
Sbjct: 69  LDESSSSIGIAMEYCEGGSLDSIYKKV-KKRGGRIGEKVLGKIAESVLKGLSYLHSRKII 127

Query: 317 HRDVKPGNFLFSCK-AVKGYLIDFNL---AMVGFDGSFNQATLPGTKY 360
           HRD+KP N L + K  VK  L DF +    +    G+F      GT +
Sbjct: 128 HRDIKPSNILLTRKGQVK--LCDFGVSGELVNSLAGTFT-----GTSF 168

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 7/127 (5%)

Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKN--FIIKYEGC 265
           E G G +G VY+A+ K  G + A K      S+  + + +  +E     N  +I+K  G 
Sbjct: 19  ELGDGAFGKVYKAKNKETGALAAAKVIETK-SEEELEDYMVEIEILATCNHPYIVKLLGA 77

Query: 266 FKCGDSDCFVLEHVKHDRPEVLKKEID--LSQLQWYGYC--LFRALASLHKQGIVHRDVK 321
           F        ++E       + +  E+D  L++ Q    C  +  AL  LH   I+HRD+K
Sbjct: 78  FYWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLK 137

Query: 322 PGNFLFS 328
            GN L +
Sbjct: 138 AGNVLLT 144

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 22/181 (12%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANA------SKHYVSNELRMLERFGGKNFIIKYE 263
           G G +G V  AR K +    A+K     A       KH +S E  +L +     F++   
Sbjct: 4   GKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMS-ERNVLLKNVKHPFLVGLH 62

Query: 264 GCFKCGDSDCFVLEHVK------HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
             F+  D   FVL+++       H + E    E    + ++Y   +  AL  LH   IV+
Sbjct: 63  FSFQTADKLYFVLDYINGGELFYHLQRERCFLE---PRARFYAAEIASALGYLHSLNIVY 119

Query: 318 RDVKPGNFLFSCKAVKGYLI--DFNLAMVGFDGSFNQATLPGT-KYVPPVNGRKVPSAKS 374
           RD+KP N L      +G+++  DF L     + +   +T  GT +Y+ P    K P  ++
Sbjct: 120 RDLKPENILLDS---QGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRT 176

Query: 375 L 375
           +
Sbjct: 177 V 177

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 17/146 (11%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHAN---ASKHYVSNELRMLERFGGKNFIIKYE 263
           GSG YG+V  A     G  VA+K    P  +   A + Y   ELR+L+    +N +I   
Sbjct: 26  GSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTY--RELRLLKHMKHEN-VIGLL 82

Query: 264 GCFKCGDS-----DCFVLEHVK-HDRPEVLK-KEIDLSQLQWYGYCLFRALASLHKQGIV 316
             F    S     D +++ H+   D   ++K +++    +Q+  Y + R L  +H   I+
Sbjct: 83  DVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADII 142

Query: 317 HRDVKPGNFLFSCKAVKGYLIDFNLA 342
           HRD+KP N   + +  +  ++DF LA
Sbjct: 143 HRDLKPSNLAVN-EDCELKILDFGLA 167

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 35/147 (23%), Positives = 53/147 (36%), Gaps = 46/147 (31%)

Query: 552 AGTKGFRAPEVL---FRSQHQGPKLDIWSAGVTLLYLMIGRTPF--FGDPEQNIKDIAKL 606
           AG K + APE +      +    K D+WS G+T++ L  GR P+  +  P Q +K + + 
Sbjct: 164 AGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVE- 222

Query: 607 RGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD 666
                                        P   LP         P+F         D V+
Sbjct: 223 ----------------------------EPSPQLPAE----KFSPEFQ--------DFVN 242

Query: 667 KCLTVNPRLRISAEDALKHEFFAPCHE 693
           KCL  N + R +  + L+H FF     
Sbjct: 243 KCLKKNYKERPNYPELLQHPFFELHLS 269

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKD 602
           GT  F APEVL  + +    +D W  GV +  +++G +PF GD E+ + D
Sbjct: 163 GTPEFLAPEVLTETSY-TRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFD 211

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 8/119 (6%)

Query: 211 SGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD 270
            G  G V+ A +      V +K       K     E  +L+     + +I+ +     G 
Sbjct: 76  PGSEGRVFVATKPGQPDPVVLKI----GQKGTTLIEAMLLQNVNHPS-VIRMKDTLVSGA 130

Query: 271 SDCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFL 326
             C VL H   D    L K    + + Q       +   L  LH Q I+HRDVK  N  
Sbjct: 131 ITCMVLPHYSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIF 189

Length = 357

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 10/143 (6%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK----CPHANASKHYV----SNELRMLERFGGKNFIIK 261
           G+G + + Y+AR    GT++A+K      + ++ +  V      E+R++ R    + I  
Sbjct: 9   GTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRM 68

Query: 262 YEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQGIVHRD 319
                +    + FV          +L K     +     Y   L R L+ LH+  I+HRD
Sbjct: 69  LGATCEDSHFNLFVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQIIHRD 128

Query: 320 VKPGNFLFSCKAVKGYLIDFNLA 342
           VK  N L      +  + DF  A
Sbjct: 129 VKGANLLIDSTGQRLRIADFGAA 151

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 20/168 (11%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFGGKNFIIKYEG 264
           G G Y  V   R K +  + A+K       H +    +V  E  + E+     F++    
Sbjct: 4   GRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHS 63

Query: 265 CFKCGDSDCFVLEHVK-------HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
           CF+       V+E+V          R   L +E      ++Y   +  AL  LH++GI++
Sbjct: 64  CFQTTSRLFLVIEYVNGGDLMFHMQRQRKLPEE----HARFYAAEICIALNFLHERGIIY 119

Query: 318 RDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           RD+K  N L      +K  L D+ +   G       +T  GT  Y+ P
Sbjct: 120 RDLKLDNVLLDADGHIK--LTDYGMCKEGLGPGDTTSTFCGTPNYIAP 165

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCP--HANASKHYVSNELRMLERFGGKNFIIKYEGCFK 267
           G G  G V  A  K+ G  VA+K         +  + NE+ ++  +  +N +  Y   + 
Sbjct: 31  GEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNS-YL 89

Query: 268 CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCL--FRALASLHKQGIVHRDVKPGNF 325
            GD    V+E ++      +     +++ Q    CL   RAL+ LH QG++HRD+K  + 
Sbjct: 90  VGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSI 149

Query: 326 LFS 328
           L +
Sbjct: 150 LLT 152

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 6/55 (10%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF-----FGDPEQNIKD 602
           GT  + APE+L R +  G  +D W+ GV +  +M GR+PF       +P+QN +D
Sbjct: 158 GTPNYIAPEIL-RGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTED 211

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 16/145 (11%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHAN---ASKHYVSNELRMLERFGGKNFIIKYE 263
           GSG  G V  A     G  VAIK    P  N   A + Y   EL +++    KN II   
Sbjct: 25  GSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAY--RELVLMKLVNHKN-IIGLL 81

Query: 264 GCFKCGDS-DCF-----VLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
             F    S + F     V+E +  +  +V++ ++D  ++ +  Y +   +  LH  GI+H
Sbjct: 82  NVFTPQKSLEEFQDVYLVMELMDANLCQVIQMDLDHERMSYLLYQMLCGIKHLHSAGIIH 141

Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLA 342
           RD+KP N +         L DF LA
Sbjct: 142 RDLKPSNIVVKSDCTLKIL-DFGLA 165

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 306 ALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFN 351
           AL  LH+ GI+HRD+KP N L S +  +K  L DF L+ V  +   N
Sbjct: 116 ALDYLHRHGIIHRDLKPDNMLISNEGHIK--LTDFGLSKVTLNRELN 160

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 22/137 (16%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRG--SEDLW 613
           +R P+VL  S     ++D+W  G     +  GR  F G   E  +  I +L G  +E+ W
Sbjct: 170 YRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETW 229

Query: 614 EVAKLHN--RESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                ++  +  +FP+     K  P IN          R D      +   +L+ K L  
Sbjct: 230 PGISSNDEFKNYNFPK----YKPQPLINH-------APRLD------TEGIELLTKFLQY 272

Query: 672 NPRLRISAEDALKHEFF 688
             + RISAE+A+KH +F
Sbjct: 273 ESKKRISAEEAMKHAYF 289

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 22/137 (16%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRG--SEDLW 613
           +R P+VL  S      +D+W  G  L  +  GR  F G   ++ +  I +L G  +E+ W
Sbjct: 169 YRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETW 228

Query: 614 E--VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
               +    R   FP+  Y A+            LI   P     + +   DL+   L  
Sbjct: 229 PGITSNEEFRSYLFPQ--YRAQP-----------LINHAPR----LDTDGIDLLSSLLLY 271

Query: 672 NPRLRISAEDALKHEFF 688
             + RISAE AL+H +F
Sbjct: 272 ETKSRISAEAALRHSYF 288

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNI 600
           GT  + APE+L   Q     +D WS GV L  ++IG++PF G  E+ +
Sbjct: 158 GTPDYIAPEILL-GQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEEL 204

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 6/55 (10%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF--FGD---PEQNIKD 602
           GT  + APE+L R +  G  +D W+ GV +  +M GR+PF   G    P+QN +D
Sbjct: 158 GTPNYIAPEIL-RGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTED 211

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 26/171 (15%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK--CPHAN----ASKHY--VSNELRMLERFGGKNFIIK 261
           G G YGTVY     N G ++A+K      +    A K Y  +  E+ +L+     N I++
Sbjct: 9   GKGAYGTVYCGL-TNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVN-IVQ 66

Query: 262 YEGCFKCGDSDCFV---LEHVKHDR-PEVLKKEIDLSQLQWYGYC--LFRALASLHKQGI 315
           Y G   C D D  +   +E V       +L +   L +  +  Y   +   +A LH   +
Sbjct: 67  YLG--TCLD-DNTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCV 123

Query: 316 VHRDVKPGNFLFSCKAVKGYLIDF----NLAMVGFDGSFNQ--ATLPGTKY 360
           VHRD+K  N +     +   LIDF     LA VG  G+ +    ++ GT Y
Sbjct: 124 VHRDIKGNNVMLMPNGIIK-LIDFGCARRLAWVGLHGTHSNMLKSMHGTPY 173

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 17/166 (10%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNEL---RMLERFGGKNFIIKYEG 264
           G G +G V   R K  G   A+K        +K  V++ L   R+L+      F+   + 
Sbjct: 4   GKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQN-TRHPFLTALKY 62

Query: 265 CFKCGDSDCFVLEHVK------HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHR 318
            F+  D  CFV+E+        H   E +  E    + ++YG  +  AL  LH   +V+R
Sbjct: 63  SFQTHDRLCFVMEYANGGELFFHLSRERVFSE---DRARFYGAEIVSALGYLHSCDVVYR 119

Query: 319 DVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           D+K  N +   K     + DF L   G        T  GT +Y+ P
Sbjct: 120 DLKLENLMLD-KDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAP 164

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIK 601
           NG+ K    C GT  + APE+L + Q     +D WS GV L  ++IG++PF G+ E  + 
Sbjct: 148 NGEGKASTFC-GTPDYIAPEIL-KGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDELF 205

Query: 602 D 602
           D
Sbjct: 206 D 206

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 18/146 (12%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK-CPHANASK---HYVSNELRMLERFGGKNFIIKYEGC 265
           G G +G V+  RRK D  +V IK  P    +K       NE ++L+     N II+Y   
Sbjct: 9   GRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPN-IIEYYEN 67

Query: 266 FKCGDSDCFVLEH---------VKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIV 316
           F    +   V+E+         ++     +L ++   + L ++   L  AL  +H + I+
Sbjct: 68  FLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDED---TILHFFVQILL-ALHHVHTKLIL 123

Query: 317 HRDVKPGNFLFSCKAVKGYLIDFNLA 342
           HRD+K  N L     +   + DF ++
Sbjct: 124 HRDLKTQNILLDKHKMVVKIGDFGIS 149

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 21/143 (14%)

Query: 199 NFESFIVEEEEGSGGYGTVYRAR---RKNDGTVVAIKC-------PHANASKHYVSNELR 248
           NFE   V    G+G YG V+  R     + G + A+K          A  ++H  + E +
Sbjct: 1   NFELLRVL---GTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRT-ERQ 56

Query: 249 MLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVL-----KKEIDLSQLQWYGYCL 303
           +LE      F++     F+       +L++V     E+      ++    S+++ Y   +
Sbjct: 57  VLEAVRRCPFLVTLHYAFQTDTKLHLILDYVNGG--ELFTHLYQREHFTESEVRVYIAEI 114

Query: 304 FRALASLHKQGIVHRDVKPGNFL 326
             AL  LH+ GI++RD+K  N L
Sbjct: 115 VLALDHLHQLGIIYRDIKLENIL 137

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 42/137 (30%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APEV+   ++   K DIWS G+T+  +  G  P+                  D
Sbjct: 162 VGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSD---------------VD 206

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPP-INLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
            +    L              KS PP +    + KL              L + V  CL 
Sbjct: 207 AFRAMML------------IPKSKPPRLEDNGYSKL--------------LREFVAACLD 240

Query: 671 VNPRLRISAEDALKHEF 687
             P+ R+SAE+ LK ++
Sbjct: 241 EEPKERLSAEELLKSKW 257

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 13/137 (9%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSED 611
            T+ +R+PE+L  + + G  +D+WS G  L  L  G+  F G+ E   +  I K+ G   
Sbjct: 163 ATRWYRSPELLLGAPY-GKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLP 221

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
             ++   ++         +     P +N P+     +    +L ++   L DL+   L +
Sbjct: 222 AEQMKLFYSNPR------FHGLRFPAVNHPQ-----SLERRYLGILSGVLLDLMKNLLKL 270

Query: 672 NPRLRISAEDALKHEFF 688
           NP  R   E  L H  F
Sbjct: 271 NPTDRYLTEQCLNHPAF 287

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 17/169 (10%)

Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEG 264
           E G+G  G V++   K  G ++A K  H     A ++ +  EL++L       +I+ + G
Sbjct: 12  ELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSP-YIVGFYG 70

Query: 265 CFKCGDSDCFVLEHVKHDR-PEVLKK--EIDLSQLQWYGYCLFRALASL-HKQGIVHRDV 320
            F         +EH+      +VLKK   I    L      + + L  L  K  I+HRDV
Sbjct: 71  AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDV 130

Query: 321 KPGNFLFSCK--------AVKGYLID-FNLAMVGFDGSFNQATLPGTKY 360
           KP N L + +         V G LID    + VG     +   L GT Y
Sbjct: 131 KPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHY 179

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 16/169 (9%)

Query: 210 GSGGYGTVYRARRKN--DGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFK 267
           G G YG VY+A+RK+  D    A+K             E+ +L      N I   +    
Sbjct: 10  GRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLS 69

Query: 268 CGDSDCFVL-EHVKHDRPEVLK-----------KEIDLSQLQWYGYCLFRALASLHKQGI 315
             D   ++L ++ +HD   ++K            ++  S ++   Y +   +  LH   +
Sbjct: 70  HSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWV 129

Query: 316 VHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPV 364
           +HRD+KP N L   +  +   +   +A +GF   FN    P     P V
Sbjct: 130 LHRDLKPANILVMGEGPERGRV--KIADMGFARLFNSPLKPLADLDPVV 176

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 40/145 (27%)

Query: 544 KQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDI 603
           +Q K     GT  + APEV+ R  + GPK+DIWS G+  + ++ G  P+  +        
Sbjct: 168 EQSKRSTMVGTPYWMAPEVVTRKAY-GPKVDIWSLGIMAIEMVEGEPPYLNE-------- 218

Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD 663
             LR    L+ +A     E   PE L A                               D
Sbjct: 219 NPLRA---LYLIATNGTPELQNPERLSAV----------------------------FRD 247

Query: 664 LVDKCLTVNPRLRISAEDALKHEFF 688
            +++CL ++   R SA++ L+H F 
Sbjct: 248 FLNRCLEMDVDRRGSAKELLQHPFL 272

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 545 QKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF 592
            KK    AGT G+ APEVL    +    +D ++ G TL  ++ GR+PF
Sbjct: 148 GKKIKGRAGTPGYMAPEVLQGEVYDFS-VDWFALGCTLYEMIAGRSPF 194

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 42/146 (28%)

Query: 544 KQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDI 603
           +Q K     GT  + APEV+ R  + GPK+DIWS G+  + ++ G  P+  +        
Sbjct: 168 EQSKRSTMVGTPYWMAPEVVTRKAY-GPKVDIWSLGIMAIEMVEGEPPYLNE-------- 218

Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF- 662
             LR    L+ +A     E   PE L                             S +F 
Sbjct: 219 NPLRA---LYLIATNGTPELQNPEKL-----------------------------SPIFR 246

Query: 663 DLVDKCLTVNPRLRISAEDALKHEFF 688
           D +++CL ++   R SA++ L+H F 
Sbjct: 247 DFLNRCLEMDVEKRGSAKELLQHPFL 272

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 259 IIKYEGCFKCGDSDCFVLEHVKHDRPEVL--KKEIDLSQLQWYGYCLFRALASLHKQGIV 316
           II     ++   + C V+   K D    +     + L Q       L  ALA LH +GI+
Sbjct: 148 IINLIHAYRWKSTVCMVMPKYKCDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRGII 207

Query: 317 HRDVKPGN-FL 326
           HRDVK  N FL
Sbjct: 208 HRDVKTENIFL 218

Length = 392

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 25/136 (18%)

Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH---YV-----------SNELRMLERF 253
           E G G +G VY+A+ K  G + A K     + +    Y+            N +++L+ F
Sbjct: 12  ELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAF 71

Query: 254 GGKNFI-IKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHK 312
             +N + I  E C   G  D  +LE         L++ +   Q++        AL  LH+
Sbjct: 72  YYENNLWILIEFC-AGGAVDAVMLE---------LERPLTEPQIRVVCKQTLEALNYLHE 121

Query: 313 QGIVHRDVKPGNFLFS 328
             I+HRD+K GN LF+
Sbjct: 122 NKIIHRDLKAGNILFT 137

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase adapter protein beta

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 25/176 (14%)

Query: 536 FYLLLGNGKQKK---DGPCAGTK--GFRAPEVLFRSQH-QGPKLDIWSAGVTLLYLMIGR 589
            Y L+ NG++ K   D P   T    + +PE+L +  +    K DI+S G+T   L  GR
Sbjct: 148 LYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGR 207

Query: 590 TPFFGDPEQNIKDIAKLRG-SEDLWEVAKLHNRESSFP-----------EDLYAAKSLPP 637
            PF       +  + KL+G      ++      ES              E + AA     
Sbjct: 208 VPFQDMLRTQML-LQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQT 266

Query: 638 INLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE 693
           +      +L T      +    +  +LV+ CL  +P  R SA   L H FF    E
Sbjct: 267 MTSE---RLRTPSS---KTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQVKE 316

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. STRAD-beta is also referred to as ALS2CR2 (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 2 protein), since the human gene encoding it is located within the juvenile ALS2 critical region on chromosome 2q33-q34. It is not linked to the development of ALS2. Length = 328

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 16/145 (11%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHAN---ASKHYVSNELRMLERFGGKNFIIKYE 263
           GSG  G V  A     G  VA+K    P  N   A + Y   EL +L+    KN II   
Sbjct: 30  GSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAY--RELVLLKCVNHKN-IISLL 86

Query: 264 GCFKCGDS-----DCF-VLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
             F    S     D + V+E +  +  +V+  E+D  ++ +  Y +   +  LH  GI+H
Sbjct: 87  NVFTPQKSLEEFQDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIH 146

Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLA 342
           RD+KP N +         ++DF LA
Sbjct: 147 RDLKPSNIVVKSDCTLK-ILDFGLA 170

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 5/123 (4%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCP--HANASKHYVSNELRMLERFGGKNFIIKYEGCFK 267
           G G  G V  A  K+ G +VA+K         +  + NE+ ++  +  +N +  Y   + 
Sbjct: 29  GEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNS-YL 87

Query: 268 CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCL--FRALASLHKQGIVHRDVKPGNF 325
            GD    V+E ++      +     +++ Q    CL   +AL+ LH QG++HRD+K  + 
Sbjct: 88  VGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSI 147

Query: 326 LFS 328
           L +
Sbjct: 148 LLT 150

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 36/152 (23%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP--EQNIKDIAKLRGSED 611
           T+ +RAPEV+    ++   +DIWS G  +  ++ G   F G    +Q  K I +L G+  
Sbjct: 180 TRYYRAPEVILGMGYK-ENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQL-GTPS 237

Query: 612 LWEVAKLH--------NR--------ESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLE 655
              +++L         NR        E  FP+ L+   S              +  + L+
Sbjct: 238 DEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDS--------------ESHNKLK 283

Query: 656 VIPSSLFDLVDKCLTVNPRLRISAEDALKHEF 687
              S   DL+ K L ++P  RIS +DAL+H +
Sbjct: 284 --ASQARDLLSKMLVIDPEKRISVDDALQHPY 313

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 45/167 (26%), Positives = 68/167 (40%), Gaps = 19/167 (11%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPH-----ANASKHYVSNELRMLERFGGKNFIIKYEG 264
           G G +G V   R K  G   A+K        A     +   E R+L+      F+   + 
Sbjct: 4   GKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKN-TRHPFLTSLKY 62

Query: 265 CFKCGDSDCFVLEHVKH-------DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
            F+  D  CFV+E+V          R  V  ++    + ++YG  +  AL  LH   IV+
Sbjct: 63  SFQTKDRLCFVMEYVNGGELFFHLSRERVFSED----RTRFYGAEIVSALDYLHSGKIVY 118

Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           RD+K  N +   K     + DF L   G   +    T  GT +Y+ P
Sbjct: 119 RDLKLENLMLD-KDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAP 164

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 39.7 bits (92), Expect = 0.004
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 274 FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK 333
            V+E +  +  +V++ E+D  ++ +  Y +   +  LH  GI+HRD+KP N +       
Sbjct: 99  LVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTL 158

Query: 334 GYLIDFNLA 342
             ++DF LA
Sbjct: 159 K-ILDFGLA 166

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	728
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
KOG1290	590	consensus Serine/threonine protein kinase [Signal	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
KOG1167	418	consensus Serine/threonine protein kinase of the C	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
KOG0607	463	consensus MAP kinase-interacting kinase and relate	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
KOG0695	593	consensus Serine/threonine protein kinase [Signal	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	100.0
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
PLN03224	507	probable serine/threonine protein kinase; Provisio	100.0
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.98
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.97
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.97
KOG3653	534	consensus Transforming growth factor beta/activin	99.97
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.97
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.97
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.96
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.96
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.96
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.96
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.96
KOG1152	772	consensus Signal transduction serine/threonine kin	99.96
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.95
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.94
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.94
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.93
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.91
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.91
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.91
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.91
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.9
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.89
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.88
PRK09188	365	serine/threonine protein kinase; Provisional	99.87
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.87
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.87
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.81
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.8
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.8
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.8
PRK12274	218	serine/threonine protein kinase; Provisional	99.79
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.79
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.78
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
PRK10345	210	hypothetical protein; Provisional	99.72
smart00090	237	RIO RIO-like kinase.	99.72
PRK14879	211	serine/threonine protein kinase; Provisional	99.69
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.68
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.67
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.65
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.63
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.63
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.61
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.59
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.58
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.56
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.52
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.48
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.35
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.32
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.27
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.2
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.16
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.15
KOG1243	690	consensus Protein kinase [General function predict	99.11
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	99.03
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.98
KOG3087	229	consensus Serine/threonine protein kinase [General	98.97
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.85
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.82
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.79
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.63
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.45
COG4248	637	Uncharacterized protein with protein kinase and he	98.45
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.41
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.32
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	98.21
PF01636	239	APH: Phosphotransferase enzyme family This family	98.17
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.16
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.04
PRK09902	216	hypothetical protein; Provisional	98.04
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.02
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	98.0
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.0
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.85
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.84
PLN02876	822	acyl-CoA dehydrogenase	97.81
KOG0576	829	consensus Mitogen-activated protein kinase kinase	97.79
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	97.57
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.56
PRK10593	297	hypothetical protein; Provisional	97.54
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	97.52
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	97.44
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	97.34
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.3
PRK05231	319	homoserine kinase; Provisional	97.24
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	97.17
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.12
PRK09550	401	mtnK methylthioribose kinase; Reviewed	96.95
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	96.82
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	96.69
KOG2270	520	consensus Serine/threonine protein kinase involved	96.65
KOG2268	465	consensus Serine/threonine protein kinase [Signal	96.55
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	96.3
PLN02236	344	choline kinase	96.27
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	95.91
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	95.66
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	95.53
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	95.48
COG2334	331	Putative homoserine kinase type II (protein kinase	95.19
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	94.3
PRK12396	409	5-methylribose kinase; Reviewed	94.29
KOG1093	725	consensus Predicted protein kinase (contains TBC a	94.16
PLN02756	418	S-methyl-5-thioribose kinase	93.95
PRK11768	325	serine/threonine protein kinase; Provisional	93.81
PRK06148	1013	hypothetical protein; Provisional	93.44
PTZ00384	383	choline kinase; Provisional	93.22
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	92.87
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	92.21
PRK06149	972	hypothetical protein; Provisional	91.89
PF04655	253	APH_6_hur: Aminoglycoside/hydroxyurea antibiotic r	91.78
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	90.58
PTZ00296	442	choline kinase; Provisional	90.45

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.1e-51  Score=434.20  Aligned_cols=267  Identities=32%  Similarity=0.460  Sum_probs=216.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---------chhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      .+.|.+.+.||+|+||.|-+|..+.+|+.||||++++..         ....+.+|++||++|+||+ ||+++++|...+
T Consensus       171 ~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~-IV~~~d~f~~~d  249 (475)
T KOG0615|consen  171 NDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPN-IVRIKDFFEVPD  249 (475)
T ss_pred             cceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCC-EEEEeeeeecCC
Confidence            467999999999999999999999999999999997532         1234679999999999999 999999999999


Q ss_pred             eeEEEEeccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEeeeccccc
Q 004835          271 SDCFVLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLIDFNLAMVG  345 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~DFGlA~~~  345 (728)
                      ..|+||||++||.|....   +.+.+...+.+++||+.||.|||++||+||||||+|||+..+  ...+||+|||+|++.
T Consensus       250 s~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~  329 (475)
T KOG0615|consen  250 SSYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVS  329 (475)
T ss_pred             ceEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhcc
Confidence            999999999998876543   348888999999999999999999999999999999999733  367899999999973


Q ss_pred             cCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccc
Q 004835          346 FDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITS  425 (728)
Q Consensus       346 ~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~  425 (728)
                      ...+                                                                            
T Consensus       330 g~~s----------------------------------------------------------------------------  333 (475)
T KOG0615|consen  330 GEGS----------------------------------------------------------------------------  333 (475)
T ss_pred             ccce----------------------------------------------------------------------------
Confidence            2211                                                                            


Q ss_pred             cccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccccc
Q 004835          426 AKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAG  505 (728)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (728)
                                                                                                      
T Consensus       334 --------------------------------------------------------------------------------  333 (475)
T KOG0615|consen  334 --------------------------------------------------------------------------------  333 (475)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhcc--CCCCCchhHHHHHHHHH
Q 004835          506 AGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRS--QHQGPKLDIWSAGVTLL  583 (728)
Q Consensus       506 ~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~--~~~~~~~DIWSlG~il~  583 (728)
                                                               .+...||||.|.||||+...  ..++.++||||+||+||
T Consensus       334 -----------------------------------------fm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLf  372 (475)
T KOG0615|consen  334 -----------------------------------------FMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLF  372 (475)
T ss_pred             -----------------------------------------ehhhhcCCccccChhheecCCeecccchheeeeccceEE
Confidence                                                     12267899999999999643  33456899999999999


Q ss_pred             HHhcCCCCCCCCChHH-HHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHH
Q 004835          584 YLMIGRTPFFGDPEQN-IKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF  662 (728)
Q Consensus       584 eLltG~~PF~~~~~~~-l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (728)
                      -+++|.+||.+...+. +.+.+. .|            +.              ......|           ..+++++.
T Consensus       373 vcLsG~pPFS~~~~~~sl~eQI~-~G------------~y--------------~f~p~~w-----------~~Iseea~  414 (475)
T KOG0615|consen  373 VCLSGYPPFSEEYTDPSLKEQIL-KG------------RY--------------AFGPLQW-----------DRISEEAL  414 (475)
T ss_pred             EEeccCCCcccccCCccHHHHHh-cC------------cc--------------cccChhh-----------hhhhHHHH
Confidence            9999999998765433 444331 11            11              1112233           56899999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCccchhcchHhHhhhc
Q 004835          663 DLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQ  703 (728)
Q Consensus       663 dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~~~~~  703 (728)
                      |||.+||.+||++|||++|+|+||||+.++-.. +|.+++.
T Consensus       415 dlI~~mL~VdP~~R~s~~eaL~hpW~~~~~~~s-~~~~l~~  454 (475)
T KOG0615|consen  415 DLINWMLVVDPENRPSADEALNHPWFKDAPCLS-KQDILKK  454 (475)
T ss_pred             HHHHHhhEeCcccCcCHHHHhcChhhhcccccc-hHHHHhh
Confidence            999999999999999999999999999877443 4444443

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=3.1e-50  Score=412.30  Aligned_cols=286  Identities=27%  Similarity=0.410  Sum_probs=234.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +.|+.+.++|+|+||+||+|+++.||+.||||++.....    .+-..+||++|+++.|+| +|.++.+|.....++||+
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~N-LVnLiEVFrrkrklhLVF   80 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHEN-LVNLIEVFRRKRKLHLVF   80 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccch-HHHHHHHHHhcceeEEEe
Confidence            579999999999999999999999999999999875433    345679999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      |||+...|+.+.+   .++...++.|++|++.|+.|+|++++|||||||+||||+ .++.+||||||+|+.+...     
T Consensus        81 E~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit-~~gvvKLCDFGFAR~L~~p-----  154 (396)
T KOG0593|consen   81 EYCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILIT-QNGVVKLCDFGFARTLSAP-----  154 (396)
T ss_pred             eecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEe-cCCcEEeccchhhHhhcCC-----
Confidence            9999998887764   489999999999999999999999999999999999999 7778999999999863210     


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (396)
T KOG0593|consen  155 --------------------------------------------------------------------------------  154 (396)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (396)
T KOG0593|consen  155 --------------------------------------------------------------------------------  154 (396)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                     ....+.+|.|.||||||.+.+...|+.++||||+||++.||++|.+.|.
T Consensus       155 -------------------------------gd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~P  203 (396)
T KOG0593|consen  155 -------------------------------GDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWP  203 (396)
T ss_pred             -------------------------------cchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCC
Confidence                                           0123467899999999999998889999999999999999999999999


Q ss_pred             CCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          594 GDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       594 ~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      |.++ +++..|.+.+|.-..... ++...+..|.     ...+|..+-.+-     ....+ ..++..+.||+.+||..|
T Consensus       204 G~SDiDQLy~I~ktLG~L~prhq-~iF~~N~~F~-----Gv~lP~~~~~ep-----Le~k~-p~~s~~~ld~~k~cL~~d  271 (396)
T KOG0593|consen  204 GRSDIDQLYLIRKTLGNLIPRHQ-SIFSSNPFFH-----GVRLPEPEHPEP-----LERKY-PKISNVLLDLLKKCLKMD  271 (396)
T ss_pred             CcchHHHHHHHHHHHcccCHHHH-HHhccCCcee-----eeecCCCCCccc-----hhhhc-ccchHHHHHHHHHHhcCC
Confidence            9887 899999999997322221 2223333221     122222211111     11122 356678999999999999


Q ss_pred             CCCCCCHHHHhcCCCCccchhcch
Q 004835          673 PRLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      |++|++.+|+|.||||.+..+..+
T Consensus       272 P~~R~sc~qll~H~yFd~~~er~~  295 (396)
T KOG0593|consen  272 PDDRLSCEQLLHHPYFDGFIEREL  295 (396)
T ss_pred             ccccccHHHHhcChHHHHHHHHHH
Confidence            999999999999999987776633

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.7e-49  Score=437.45  Aligned_cols=249  Identities=28%  Similarity=0.425  Sum_probs=219.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC-----cCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA-----NASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~-----~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ..|...+.||+|||+.||.+++..+|+.||+|++.+     ....+.+.+||+|.+.|+|+| ||+++++|++.++.|||
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~Hpn-IV~f~~~FEDs~nVYiv   96 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPN-IVQFYHFFEDSNNVYIV   96 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCc-EEeeeeEeecCCceEEE
Confidence            469999999999999999999999999999999874     455677899999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      +|+|..+++..+.+   .+++.+++.+++||+.||.|||+++|||||||..||||+ ++.++||+|||||..+....   
T Consensus        97 LELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~-~~~~VKIgDFGLAt~le~~~---  172 (592)
T KOG0575|consen   97 LELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLN-ENMNVKIGDFGLATQLEYDG---  172 (592)
T ss_pred             EEecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeec-CcCcEEecccceeeeecCcc---
Confidence            99999999887765   499999999999999999999999999999999999999 88889999999997532110   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (592)
T KOG0575|consen  173 --------------------------------------------------------------------------------  172 (592)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (592)
T KOG0575|consen  173 --------------------------------------------------------------------------------  172 (592)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                       .+....||||.|.||||+.+.+| ++.+||||+|||||.|++|++||
T Consensus       173 ---------------------------------Erk~TlCGTPNYIAPEVl~k~gH-sfEvDiWSlGcvmYtLL~G~PPF  218 (592)
T KOG0575|consen  173 ---------------------------------ERKKTLCGTPNYIAPEVLNKSGH-SFEVDIWSLGCVMYTLLVGRPPF  218 (592)
T ss_pred             ---------------------------------cccceecCCCcccChhHhccCCC-CCchhhhhhhhHHHhhhhCCCCc
Confidence                                             11225679999999999998886 99999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       593 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      ..++-......++                                          ...+.++..++.++.|||.+||..|
T Consensus       219 etk~vkety~~Ik------------------------------------------~~~Y~~P~~ls~~A~dLI~~lL~~~  256 (592)
T KOG0575|consen  219 ETKTVKETYNKIK------------------------------------------LNEYSMPSHLSAEAKDLIRKLLRPN  256 (592)
T ss_pred             ccchHHHHHHHHH------------------------------------------hcCcccccccCHHHHHHHHHHhcCC
Confidence            8876554444332                                          2234566788999999999999999


Q ss_pred             CCCCCCHHHHhcCCCCcc
Q 004835          673 PRLRISAEDALKHEFFAP  690 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~~  690 (728)
                      |.+|||+++||.|+||+.
T Consensus       257 P~~Rpsl~~vL~h~Ff~~  274 (592)
T KOG0575|consen  257 PSERPSLDEVLDHPFFKS  274 (592)
T ss_pred             cccCCCHHHHhcCHhhhC
Confidence            999999999999999953

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.5e-50  Score=434.22  Aligned_cols=279  Identities=30%  Similarity=0.452  Sum_probs=231.1

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeC--Cee
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCG--DSD  272 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~--~~~  272 (728)
                      ..+.|+.+++||+|+||.||+|++..+|+.||+|.++...    ......+||.||++|.|+| |+++.+.....  ..+
T Consensus       115 ~~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpN-IikL~eivt~~~~~si  193 (560)
T KOG0600|consen  115 RADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPN-IIKLEEIVTSKLSGSI  193 (560)
T ss_pred             chHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCc-ccceeeEEEecCCceE
Confidence            3568999999999999999999999999999999987543    3456789999999999999 99999998776  689


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |||+|||++++...+..   .|++.+++.|+.||+.||+|+|++||+|||||.+||||| +++.+||+|||||++.....
T Consensus       194 YlVFeYMdhDL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLid-n~G~LKiaDFGLAr~y~~~~  272 (560)
T KOG0600|consen  194 YLVFEYMDHDLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILID-NNGVLKIADFGLARFYTPSG  272 (560)
T ss_pred             EEEEecccchhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEc-CCCCEEeccccceeeccCCC
Confidence            99999999988777665   499999999999999999999999999999999999999 77789999999998622110


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       273 --------------------------------------------------------------------------------  272 (560)
T KOG0600|consen  273 --------------------------------------------------------------------------------  272 (560)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       273 --------------------------------------------------------------------------------  272 (560)
T KOG0600|consen  273 --------------------------------------------------------------------------------  272 (560)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                         ....+..|-|.||||||.|+|...|+.++|+||+||||.||+.|+
T Consensus       273 -----------------------------------~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gk  317 (560)
T KOG0600|consen  273 -----------------------------------SAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGK  317 (560)
T ss_pred             -----------------------------------CcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCC
Confidence                                               012456778999999999999999999999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHHHhCCc--hHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          590 TPFFGDPE-QNIKDIAKLRGSE--DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       590 ~PF~~~~~-~~l~~i~~~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      +.|.|.++ +++..|+++.|+|  ..|...++.....          +.+......-.      .+....++..+.+|+.
T Consensus       318 PI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~----------~kp~~~y~r~l------~E~~~~~~~~~l~Ll~  381 (560)
T KOG0600|consen  318 PILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATI----------FKPQQPYKRRL------RETFKDFPASALDLLE  381 (560)
T ss_pred             CCcCCccHHHHHHHHHHHhCCCChhccccccCCcccc----------cCCCCcccchH------HHHhccCCHHHHHHHH
Confidence            99999887 8999999999985  4444333321111          11111111000      1123568899999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCcc
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAP  690 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~  690 (728)
                      +||++||++|.||.++|+|+||+.
T Consensus       382 ~lL~ldP~kR~tA~~aL~seyF~t  405 (560)
T KOG0600|consen  382 KLLSLDPDKRGTASSALQSEYFTT  405 (560)
T ss_pred             HHhccCccccccHHHHhcCccccc
Confidence            999999999999999999999953

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-49  Score=415.37  Aligned_cols=274  Identities=24%  Similarity=0.358  Sum_probs=233.9

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ....++|++.++||+|+||+||.++.+++++.||+|++++.     .......+|..||.+++||. |++++..|++++.
T Consensus        21 ~~~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPF-iv~l~ysFQt~~k   99 (357)
T KOG0598|consen   21 MVGPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPF-IVKLIYSFQTEEK   99 (357)
T ss_pred             cCChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCc-EeeeEEecccCCe
Confidence            34568999999999999999999999999999999999864     23566889999999999998 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          272 DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      +|||+||+.||.|...+.   .+++..++.|+.+|+.||.|||++|||||||||+||||| ..++++|+|||+|+.....
T Consensus       100 LylVld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd-~~GHi~LtDFgL~k~~~~~  178 (357)
T KOG0598|consen  100 LYLVLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLD-EQGHIKLTDFGLCKEDLKD  178 (357)
T ss_pred             EEEEEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeec-CCCcEEEeccccchhcccC
Confidence            999999999998887765   499999999999999999999999999999999999999 7778999999999852110


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (357)
T KOG0598|consen  179 --------------------------------------------------------------------------------  178 (357)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (357)
T KOG0598|consen  179 --------------------------------------------------------------------------------  178 (357)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                          .......|||+.|||||++.+.+ |+.++|||||||++|||++|
T Consensus       179 ------------------------------------~~~t~tfcGT~eYmAPEil~~~g-y~~~vDWWsLGillYeML~G  221 (357)
T KOG0598|consen  179 ------------------------------------GDATRTFCGTPEYMAPEILLGKG-YDKAVDWWSLGILLYEMLTG  221 (357)
T ss_pred             ------------------------------------CCccccccCCccccChHHHhcCC-CCcccchHhHHHHHHHHhhC
Confidence                                                01122468999999999998886 59999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccC-CcccccCchhHHHHHHH
Q 004835          589 RTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKR-PDFLEVIPSSLFDLVDK  667 (728)
Q Consensus       589 ~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~dLi~~  667 (728)
                      .+||.+.+...+.+.+.                                          ..+ +..+..++.+++|||.+
T Consensus       222 ~pPF~~~~~~~~~~~I~------------------------------------------~~k~~~~p~~ls~~ardll~~  259 (357)
T KOG0598|consen  222 KPPFYAEDVKKMYDKIL------------------------------------------KGKLPLPPGYLSEEARDLLKK  259 (357)
T ss_pred             CCCCcCccHHHHHHHHh------------------------------------------cCcCCCCCccCCHHHHHHHHH
Confidence            99999987654433221                                          111 23334578999999999


Q ss_pred             hcccCCCCCC----CHHHHhcCCCCccchhcchHhHhhhcccccCCCC
Q 004835          668 CLTVNPRLRI----SAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTT  711 (728)
Q Consensus       668 ~L~~dP~~Rp----ta~e~L~Hp~f~~~~~~~~~~~~~~~~~~~~~~~  711 (728)
                      +|+.||++|.    .++++-+||||++++|....++.+.+...+..+.
T Consensus       260 LL~rdp~~RLg~~~d~~~ik~HpfF~~inW~~l~~k~l~PpF~P~~~~  307 (357)
T KOG0598|consen  260 LLKRDPRQRLGGPGDAEEIKRHPFFKGINWEKLLAKKLSPPFKPNVTG  307 (357)
T ss_pred             HhccCHHHhcCCCCChHHhhcCcccccCCHHHHHhcCCCCCeecCCCC
Confidence            9999999996    5889999999999999999999888877665444

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-50  Score=430.77  Aligned_cols=280  Identities=29%  Similarity=0.425  Sum_probs=231.8

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhH--HHHHHHHHHhcC-CCCceEEecceEEeCC-eeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHY--VSNELRMLERFG-GKNFIIKYEGCFKCGD-SDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~--~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~~-~~~  273 (728)
                      ..++|.++++||.|+||.||+|+...+|..||||.++..- ..++  -.||+..|++|+ |+| |+++..++.+.+ .+|
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpn-iikL~Evi~d~~~~L~   86 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPN-IIKLKEVIRDNDRILY   86 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCc-chhhHHHhhccCceEe
Confidence            4578999999999999999999999999999999987542 2222  358999999999 888 999999999888 999


Q ss_pred             EEEeccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +|||||+..+.+.+..+   |++..++.|++||++||+|+|.+|+.||||||||||+. ....+||+|||+|+....   
T Consensus        87 fVfE~Md~NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~-~~~~iKiaDFGLARev~S---  162 (538)
T KOG0661|consen   87 FVFEFMDCNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILIS-GNDVIKIADFGLAREVRS---  162 (538)
T ss_pred             eeHHhhhhhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEec-ccceeEeccccccccccc---
Confidence            99999999988877644   99999999999999999999999999999999999998 567899999999985210   


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (538)
T KOG0661|consen  163 --------------------------------------------------------------------------------  162 (538)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (538)
T KOG0661|consen  163 --------------------------------------------------------------------------------  162 (538)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                        ....+.+|.|.||||||+|+++..|+.++||||+|||++|+.+=++
T Consensus       163 ----------------------------------kpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrP  208 (538)
T KOG0661|consen  163 ----------------------------------KPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRP  208 (538)
T ss_pred             ----------------------------------CCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcc
Confidence                                              0124577889999999999999999999999999999999999999


Q ss_pred             CCCCCCh-HHHHHHHHHhCCch--HHHHHHhcc--CCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHH
Q 004835          591 PFFGDPE-QNIKDIAKLRGSED--LWEVAKLHN--RESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLV  665 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi  665 (728)
                      .|.|.++ +++.+|.+.+|+|.  .|.......  ....||       ..++..+...          ....+.++.+||
T Consensus       209 LFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P-------~~~~~~l~~L----------~p~~s~~~~~li  271 (538)
T KOG0661|consen  209 LFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFP-------QVKPSPLKDL----------LPNASSEAASLI  271 (538)
T ss_pred             cCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCC-------cCCCCChHHh----------CcccCHHHHHHH
Confidence            9999887 89999999999853  333211111  112222       1222222222          234788999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          666 DKCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       666 ~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      .+||.|||.+||||.|+|+||||......
T Consensus       272 ~~ll~WDP~kRpTA~~al~~pffq~~~~~  300 (538)
T KOG0661|consen  272 ERLLAWDPDKRPTASQALQHPFFQVGRAS  300 (538)
T ss_pred             HHHhcCCCccCccHHHHhcCccccccccc
Confidence            99999999999999999999999965543

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=4.2e-49  Score=398.45  Aligned_cols=289  Identities=29%  Similarity=0.443  Sum_probs=236.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ++|...++||+|.||.||+|++..+|+.||||.++....    .....+||..|+.++|+| |+.++++|-..+.+.||+
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~n-Ii~LiD~F~~~~~l~lVf   80 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPN-IIELIDVFPHKSNLSLVF   80 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcc-hhhhhhhccCCCceEEEE
Confidence            478889999999999999999999999999999875432    345789999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          277 EHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       277 E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      ||++.++...+..+   ++...++.++.++++||+|||++.|+||||||.|+||+ .++.+||+|||+|+...       
T Consensus        81 Efm~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis-~~g~lKiADFGLAr~f~-------  152 (318)
T KOG0659|consen   81 EFMPTDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLIS-SDGQLKIADFGLARFFG-------  152 (318)
T ss_pred             EeccccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEc-CCCcEEeecccchhccC-------
Confidence            99998877666544   88899999999999999999999999999999999999 66789999999998621       


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                             +.+                      
T Consensus       153 -------------------------------------------------------~p~----------------------  155 (318)
T KOG0659|consen  153 -------------------------------------------------------SPN----------------------  155 (318)
T ss_pred             -------------------------------------------------------CCC----------------------
Confidence                                                                   100                      


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (318)
T KOG0659|consen  156 --------------------------------------------------------------------------------  155 (318)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                      ...+..|-|.||||||.|+|+..|+..+||||+|||+.||+-|.+.|.
T Consensus       156 --------------------------------~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fp  203 (318)
T KOG0659|consen  156 --------------------------------RIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFP  203 (318)
T ss_pred             --------------------------------cccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCC
Confidence                                            001123679999999999999999999999999999999999999999


Q ss_pred             CCCh-HHHHHHHHHhCCch--HHH-HHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          594 GDPE-QNIKDIAKLRGSED--LWE-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       594 ~~~~-~~l~~i~~~~G~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      |+++ +++..|+..+|+|.  .|. +..+.+.        .....+|......          .....+.++.||+.+||
T Consensus       204 G~sDidQL~~If~~LGTP~~~~WP~~~~lpdY--------~~~~~~P~~~~~~----------lf~aas~d~ldLl~~m~  265 (318)
T KOG0659|consen  204 GDSDIDQLSKIFRALGTPTPDQWPEMTSLPDY--------VKIQQFPKPPLNN----------LFPAASSDALDLLSKML  265 (318)
T ss_pred             CCchHHHHHHHHHHcCCCCcccCccccccccH--------HHHhcCCCCcccc----------ccccccHHHHHHHHhhh
Confidence            9887 89999999999854  343 1111111        1112223222221          34567788899999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchhcchHhHhhhccc
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGS  705 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~~~~~~~  705 (728)
                      ++||.+|+||.|+|+|+||+..+......++-++..
T Consensus       266 ~ynP~~Rita~qaL~~~yf~~~P~pt~~~~lp~p~~  301 (318)
T KOG0659|consen  266 TYNPKKRITASQALKHPYFKSLPLPTPPSKLPIPST  301 (318)
T ss_pred             ccCchhcccHHHHhcchhhhcCCCCCChhhCcCCcc
Confidence            999999999999999999998776666666555444

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=1.3e-48  Score=426.16  Aligned_cols=317  Identities=22%  Similarity=0.310  Sum_probs=231.3

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ...+++|+++.+||+|+||.||+|+-+.||..||+|++++.     .....+..|-.+|....++. ||+++..|++.++
T Consensus       137 r~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~-vVKLyYsFQD~~~  215 (550)
T KOG0605|consen  137 RLSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPW-VVKLYYSFQDKEY  215 (550)
T ss_pred             cCCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCc-EEEEEEEecCCCe
Confidence            44678999999999999999999999999999999999864     34566888999999977776 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          272 DCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      +||||||++||....++..   |++..+++|+.+++.|+..||..|+|||||||+|+||| ..+++||+|||||.-....
T Consensus       216 LYLiMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD-~~GHiKLSDFGLs~gl~~~  294 (550)
T KOG0605|consen  216 LYLIMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLID-AKGHIKLSDFGLSTGLDKK  294 (550)
T ss_pred             eEEEEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeec-CCCCEeeccccccchhhhh
Confidence            9999999999998877643   99999999999999999999999999999999999999 6778999999999532211


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                      .....      |.                                           .++-..                 .
T Consensus       295 ~~~~~------~~-------------------------------------------~~~~~~-----------------~  308 (550)
T KOG0605|consen  295 HRIES------YR-------------------------------------------LDEQMQ-----------------I  308 (550)
T ss_pred             hhhhh------hc-------------------------------------------chhhhh-----------------h
Confidence            10000      00                                           000000                 0


Q ss_pred             ccccCCccccc--CCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          429 ATSTRTPAERL--REPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       429 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                      ..+...+.++.  +.+..-..+.+.....+                                                  
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~--------------------------------------------------  338 (550)
T KOG0605|consen  309 NLSEAKPSDFPKFNTPRSTMSRREQLQTWK--------------------------------------------------  338 (550)
T ss_pred             hhccCCCccccccccccchhhHHHHHHHHH--------------------------------------------------
Confidence            00000000000  00000000111110000                                                  


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                         .......-..||||.|+|||||++.+ |+..+||||||||+|||+
T Consensus       339 -----------------------------------~nrr~~a~StVGTPDYiAPEVll~kg-Y~~~cDwWSLG~ImyEmL  382 (550)
T KOG0605|consen  339 -----------------------------------RNRRQLAYSTVGTPDYIAPEVLLGKG-YGKECDWWSLGCIMYEML  382 (550)
T ss_pred             -----------------------------------hhhhhhhhcccCCccccchHHHhcCC-CCccccHHHHHHHHHHHH
Confidence                                               11111223478999999999998887 699999999999999999


Q ss_pred             cCCCCCCCCChHHHHH-HHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHH
Q 004835          587 IGRTPFFGDPEQNIKD-IAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLV  665 (728)
Q Consensus       587 tG~~PF~~~~~~~l~~-i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi  665 (728)
                      .|-+||.+++++.... |+.                                     |...+....+  ..++++++|||
T Consensus       383 vGyPPF~s~tp~~T~rkI~n-------------------------------------wr~~l~fP~~--~~~s~eA~DLI  423 (550)
T KOG0605|consen  383 VGYPPFCSETPQETYRKIVN-------------------------------------WRETLKFPEE--VDLSDEAKDLI  423 (550)
T ss_pred             hCCCCCCCCCHHHHHHHHHH-------------------------------------HhhhccCCCc--CcccHHHHHHH
Confidence            9999999998865443 331                                     2221111111  24568999999


Q ss_pred             HHhcccCCCCCCC---HHHHhcCCCCccchhcchHhHhhhccccc
Q 004835          666 DKCLTVNPRLRIS---AEDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       666 ~~~L~~dP~~Rpt---a~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      .+||+ ||++|..   ++||.+||||+.|+|.-..++--..-+++
T Consensus       424 ~rll~-d~~~RLG~~G~~EIK~HPfF~~v~W~~l~~~~apfvP~v  467 (550)
T KOG0605|consen  424 TRLLC-DPENRLGSKGAEEIKKHPFFKGVDWDHLREMPAPFVPQV  467 (550)
T ss_pred             HHHhc-CHHHhcCcccHHHHhcCCccccCCcchhhcCCCCCCCCC
Confidence            99999 9999986   99999999999999987777655444444

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=5.1e-49  Score=407.91  Aligned_cols=289  Identities=29%  Similarity=0.412  Sum_probs=234.5

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchh----HHHHHHHHHHhcCCCCceEEecceEEe--CCe
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH----YVSNELRMLERFGGKNFIIKYEGCFKC--GDS  271 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~----~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--~~~  271 (728)
                      ..++.|+.+..|++|+||.||+|+++.+++.||+|.++......    ...+||.+|.+++|+| ||.+..+...  -+.
T Consensus        73 rsv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~N-IV~vkEVVvG~~~d~  151 (419)
T KOG0663|consen   73 RSVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPN-IVEVKEVVVGSNMDK  151 (419)
T ss_pred             ccHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCC-eeeeEEEEeccccce
Confidence            35678999999999999999999999999999999998654433    3579999999999999 9988777653  357


Q ss_pred             eEEEEeccCCCChHHH---hhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          272 DCFVLEHVKHDRPEVL---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l---~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      +|+|||||++++...+   .+.|...+++.++.|++.||+|||.+.|+||||||+|+|+. +.+.+||+|||+|+.... 
T Consensus       152 iy~VMe~~EhDLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~-~~G~lKiaDFGLAR~ygs-  229 (419)
T KOG0663|consen  152 IYIVMEYVEHDLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLS-HKGILKIADFGLAREYGS-  229 (419)
T ss_pred             eeeeHHHHHhhHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhceeEecccchhheeec-cCCcEEecccchhhhhcC-
Confidence            9999999999865444   34699999999999999999999999999999999999999 777899999999985210 


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       230 --------------------------------------------------------------------------------  229 (419)
T KOG0663|consen  230 --------------------------------------------------------------------------------  229 (419)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       230 --------------------------------------------------------------------------------  229 (419)
T KOG0663|consen  230 --------------------------------------------------------------------------------  229 (419)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                         ..+..++.|-|.||||||.|++...|+.++|+||+|||+.||+++
T Consensus       230 -----------------------------------p~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~  274 (419)
T KOG0663|consen  230 -----------------------------------PLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQ  274 (419)
T ss_pred             -----------------------------------CcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhc
Confidence                                               113456778899999999999999999999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHHHhCCc--hHHH-HHHhccC-CCCCcchhhcccCCCCCCchhhhhhhccCCccccc-CchhHH
Q 004835          589 RTPFFGDPE-QNIKDIAKLRGSE--DLWE-VAKLHNR-ESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEV-IPSSLF  662 (728)
Q Consensus       589 ~~PF~~~~~-~~l~~i~~~~G~~--~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  662 (728)
                      .+.|.|.++ +++..|++++|.|  ..|. ...+... ...|++          ....      ..+..|... +++..+
T Consensus       275 kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~----------~pyn------~lr~kF~~~~lse~g~  338 (419)
T KOG0663|consen  275 KPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSE----------HPYN------NLRKKFGALSLSEQGF  338 (419)
T ss_pred             CCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCC----------CCch------hhhhhccccccchhHH
Confidence            999999887 8999999999975  3333 1111111 111111          1111      123344433 679999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCccchhcchHhHh
Q 004835          663 DLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKL  700 (728)
Q Consensus       663 dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~~  700 (728)
                      ||+..+|++||.+|+||+|+|+|+||++.+-+.....+
T Consensus       339 ~Lln~llt~dP~kR~tA~~~L~h~~F~e~P~p~~P~~~  376 (419)
T KOG0663|consen  339 DLLNKLLTYDPGKRITAEDGLKHEYFRETPLPIDPSMF  376 (419)
T ss_pred             HHHHHHhccCccccccHHHhhcccccccCCCCCChhhc
Confidence            99999999999999999999999999997766665544

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-48  Score=422.45  Aligned_cols=270  Identities=30%  Similarity=0.407  Sum_probs=225.4

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC-----cCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA-----NASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~-----~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ...+|.+++.||+|+|++||+|+.+.+++.||||++.+     +.....+.+|-.+|.+|.+++.|++|+..|++...+|
T Consensus        71 ~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLY  150 (604)
T KOG0592|consen   71 TPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLY  150 (604)
T ss_pred             ChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceE
Confidence            35689999999999999999999999999999999875     3455678899999999965555999999999999999


Q ss_pred             EEEeccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +|+||+++|.+-.++++   |++..++.|+.||+.||+|||++|||||||||+||||| ++++++|+|||.|+++.....
T Consensus       151 FvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd-~dmhikITDFGsAK~l~~~~~  229 (604)
T KOG0592|consen  151 FVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLD-KDGHIKITDFGSAKILSPSQK  229 (604)
T ss_pred             EEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEc-CCCcEEEeeccccccCChhhc
Confidence            99999999887666643   89999999999999999999999999999999999999 788999999999997432211


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                      .+.                                                                             
T Consensus       230 ~~~-----------------------------------------------------------------------------  232 (604)
T KOG0592|consen  230 SQE-----------------------------------------------------------------------------  232 (604)
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                    ++...                                             
T Consensus       233 ------------------------------~~~~~---------------------------------------------  237 (604)
T KOG0592|consen  233 ------------------------------NPVDP---------------------------------------------  237 (604)
T ss_pred             ------------------------------CccCc---------------------------------------------
Confidence                                          00000                                             


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                     .........+|||..|.+||+|.... .++.+|||+||||||.|+.|.+
T Consensus       238 -------------------------------~~a~s~~~SFVGTAeYVSPElL~~~~-~~~~sDiWAlGCilyQmlaG~P  285 (604)
T KOG0592|consen  238 -------------------------------NQASSRRSSFVGTAEYVSPELLNDSP-AGPSSDLWALGCILYQMLAGQP  285 (604)
T ss_pred             -------------------------------ccccCcccceeeeecccCHHHhcCCC-CCcccchHHHHHHHHHHhcCCC
Confidence                                           00001124789999999999995544 6999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.++..+++                                          ++.....+|++.+++.+.|||.++|.
T Consensus       286 PFra~NeyliFq------------------------------------------kI~~l~y~fp~~fp~~a~dLv~KLLv  323 (604)
T KOG0592|consen  286 PFRAANEYLIFQ------------------------------------------KIQALDYEFPEGFPEDARDLIKKLLV  323 (604)
T ss_pred             CCccccHHHHHH------------------------------------------HHHHhcccCCCCCCHHHHHHHHHHHc
Confidence            999988765433                                          23334567888899999999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccchhcc
Q 004835          671 VNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      .||.+|+|++|+.+||||.+|.+.-
T Consensus       324 ~dp~~Rlt~~qIk~HpFF~~Vdw~n  348 (604)
T KOG0592|consen  324 RDPSDRLTSQQIKAHPFFEGVDWEN  348 (604)
T ss_pred             cCccccccHHHHhhCcccccCChhh
Confidence            9999999999999999999999765

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-47  Score=392.30  Aligned_cols=272  Identities=24%  Similarity=0.334  Sum_probs=235.6

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+++|+++..||.|+||.|.+++.+.+|..+|+|++.+..     ..+...+|..+|+.+.||. ++++++.|.+...+
T Consensus        41 ~~l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PF-lv~l~~t~~d~~~l  119 (355)
T KOG0616|consen   41 YSLQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPF-LVKLYGTFKDNSNL  119 (355)
T ss_pred             cchhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCce-eEEEEEeeccCCeE
Confidence            45789999999999999999999999999999999998653     3456789999999999998 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |+||||++||-+..+.+   ++++..+++|+.||+.||+|||+++|++|||||+||||| .++.+||+|||+|+..... 
T Consensus       120 ymvmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD-~~G~iKitDFGFAK~v~~r-  197 (355)
T KOG0616|consen  120 YMVMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLD-QNGHIKITDFGFAKRVSGR-  197 (355)
T ss_pred             EEEEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeec-cCCcEEEEeccceEEecCc-
Confidence            99999999998877764   499999999999999999999999999999999999999 7778999999999852111 


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (355)
T KOG0616|consen  198 --------------------------------------------------------------------------------  197 (355)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (355)
T KOG0616|consen  198 --------------------------------------------------------------------------------  197 (355)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                            .-..||||.|+|||++...+ |+.++|||||||++|||+.|.
T Consensus       198 --------------------------------------T~TlCGTPeYLAPEii~sk~-ynkavDWWalGVLIYEMlaG~  238 (355)
T KOG0616|consen  198 --------------------------------------TWTLCGTPEYLAPEIIQSKG-YNKAVDWWALGVLIYEMLAGY  238 (355)
T ss_pred             --------------------------------------EEEecCCccccChHHhhcCC-CCcchhHHHHHHHHHHHHcCC
Confidence                                                  12457999999999995555 699999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          590 TPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       590 ~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      +||+++++..+.+                                          +|......|+..++.+++|||.++|
T Consensus       239 pPF~~~~~~~iY~------------------------------------------KI~~~~v~fP~~fs~~~kdLl~~LL  276 (355)
T KOG0616|consen  239 PPFYDDNPIQIYE------------------------------------------KILEGKVKFPSYFSSDAKDLLKKLL  276 (355)
T ss_pred             CCCcCCChHHHHH------------------------------------------HHHhCcccCCcccCHHHHHHHHHHH
Confidence            9999987754433                                          3444567788889999999999999


Q ss_pred             ccCCCCCC-----CHHHHhcCCCCccchhcchHhHhhhcccccCCCCCC
Q 004835          670 TVNPRLRI-----SAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTTGN  713 (728)
Q Consensus       670 ~~dP~~Rp-----ta~e~L~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~  713 (728)
                      ++|-.+|.     ...++..||||+++.+....++.+.....+.+..+.
T Consensus       277 ~vD~t~R~gnlknG~~dIk~H~wF~~v~W~~i~~r~ie~P~~pp~~~~~  325 (355)
T KOG0616|consen  277 QVDLTKRFGNLKNGVEDIKNHPWFKGVDWEAILQRKIEPPFEPPNIHGP  325 (355)
T ss_pred             hhhhHhhhcCcCCCccccccCcccccccHHHHhhccccCCCCCccccCC
Confidence            99999995     478999999999999988888877766655444443

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.3e-48  Score=405.27  Aligned_cols=279  Identities=30%  Similarity=0.504  Sum_probs=235.2

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCC-----eeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD-----SDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~-----~~~LV~  276 (728)
                      .|.-.+++|.|+||.||.|....+++.||||..-.+..  .-.+|+++|+.+.||| |+++..+|....     ...+||
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r--~knrEl~im~~l~HpN-IV~L~~~f~~~~~~d~~~lnlVl  101 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR--YKNRELQIMRKLDHPN-IVRLLYFFSSSTESDEVYLNLVL  101 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC--cCcHHHHHHHhcCCcC-eeeEEEEEEecCCCchhHHHHHH
Confidence            58889999999999999999999999999998765433  2347999999999999 999888886432     457899


Q ss_pred             eccCCCChHHHh------hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          277 EHVKHDRPEVLK------KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       277 E~~~~~~l~~l~------~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      ||++..+...+.      .+++.-.++.|++||++||+|||+.||+||||||.|||+|.+.+.+||||||.|+.+..+.-
T Consensus       102 eymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~ep  181 (364)
T KOG0658|consen  102 EYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEP  181 (364)
T ss_pred             HhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcceeeccCCC
Confidence            999998877765      34888899999999999999999999999999999999998889999999999987422110


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (364)
T KOG0658|consen  182 --------------------------------------------------------------------------------  181 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (364)
T KOG0658|consen  182 --------------------------------------------------------------------------------  181 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                           ......|..|||||.+++...|+.++||||+||++.||+-|++
T Consensus       182 -------------------------------------niSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~p  224 (364)
T KOG0658|consen  182 -------------------------------------NISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQP  224 (364)
T ss_pred             -------------------------------------ceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCc
Confidence                                                 0134568999999999999999999999999999999999999


Q ss_pred             CCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          591 PFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      .|.|++. +++..|++.+|.|...++..+.....++.        .|.+....|.+      -+...+++++.||+.++|
T Consensus       225 lFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~--------~p~ik~~~~~~------~~~~~~~~d~~dll~~~L  290 (364)
T KOG0658|consen  225 LFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFK--------FPQIKAHPWHK------VFFKRLPPDALDLLSKLL  290 (364)
T ss_pred             ccCCCCHHHHHHHHHHHhCCCCHHHHhhcCccccccc--------Cccccccccee------ecccCCCHHHHHHHHHHh
Confidence            9999876 89999999999999988887766533221        22233333432      244678899999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchhc
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      .++|.+|.++.|+|.||||..++++
T Consensus       291 ~Y~P~~R~~~~~~l~h~fFdelr~~  315 (364)
T KOG0658|consen  291 QYSPSKRLSALEALAHPFFDELRDP  315 (364)
T ss_pred             ccChhhcCCHHHHhcchhhHHhhCc
Confidence            9999999999999999999998877

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-48  Score=403.85  Aligned_cols=290  Identities=28%  Similarity=0.429  Sum_probs=238.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC----cCchhHHHHHHHHHHhcCCCCceEEecceEEe-----CCe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA----NASKHYVSNELRMLERFGGKNFIIKYEGCFKC-----GDS  271 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~----~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~-----~~~  271 (728)
                      ..|..++.||+|+||.|+.+.+..+|+.||||++..    ....++..+|+.+|+.++|+| |+.+.+.+..     -..
T Consensus        22 ~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeN-Ii~l~di~~p~~~~~f~D  100 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHEN-IIGLLDIFRPPSRDKFND  100 (359)
T ss_pred             ceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCC-cceEEeecccccccccce
Confidence            356668999999999999999999999999998763    334567889999999999999 9988888875     356


Q ss_pred             eEEEEeccCCCChHHHhhc--CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          272 DCFVLEHVKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      .|+|+|+|+.++...+...  ++...+..+++||++||.|+|+.+|+||||||.|+|++ .+..+||+|||+|+..... 
T Consensus       101 vYiV~elMetDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n-~~c~lKI~DFGLAR~~~~~-  178 (359)
T KOG0660|consen  101 VYLVFELMETDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLN-ADCDLKICDFGLARYLDKF-  178 (359)
T ss_pred             eEEehhHHhhHHHHHHHcCccccHHHHHHHHHHHHHhcchhhcccccccccchhheeec-cCCCEEeccccceeecccc-
Confidence            8999999977766666543  88999999999999999999999999999999999999 6667899999999852110 


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (359)
T KOG0660|consen  179 --------------------------------------------------------------------------------  178 (359)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (359)
T KOG0660|consen  179 --------------------------------------------------------------------------------  178 (359)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                       ......+..|.|.||||||+++....|+.++||||+||||.||++|+
T Consensus       179 ---------------------------------~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gk  225 (359)
T KOG0660|consen  179 ---------------------------------FEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGK  225 (359)
T ss_pred             ---------------------------------CcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCC
Confidence                                             01122357889999999999999999999999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          590 TPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       590 ~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      +.|.|.+. +++..|+.++|+|+...+..+.+....     .-...+|......|..+       ....++.+.||+.+|
T Consensus       226 plFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar-----~yi~slp~~p~~~f~~~-------fp~a~p~AidLlekm  293 (359)
T KOG0660|consen  226 PLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKAR-----PYIKSLPQIPKQPFSSI-------FPNANPLAIDLLEKM  293 (359)
T ss_pred             CCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHH-----HHHHhCCCCCCCCHHHH-------cCCCCHHHHHHHHHH
Confidence            99999876 899999999999887777666532110     01123333444444332       246789999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCccchhcchHh
Q 004835          669 LTVNPRLRISAEDALKHEFFAPCHEMLRKQ  698 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~  698 (728)
                      |++||.+|+||+|+|+||||...|....+.
T Consensus       294 L~fdP~kRita~eAL~hPYl~~~hdp~dEP  323 (359)
T KOG0660|consen  294 LVFDPKKRITAEEALAHPYLAPYHDPEDEP  323 (359)
T ss_pred             hccCccccCCHHHHhcChhhhhhcCCccCC
Confidence            999999999999999999999999776654

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-47  Score=401.27  Aligned_cols=256  Identities=27%  Similarity=0.398  Sum_probs=214.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCe-eEE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCF  274 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~-~~L  274 (728)
                      ..++++.+..||+|..|+||+++++.+++.+|+|++..+   ....++.+|+++++.++||+ ||.+|++|..+.. .+|
T Consensus        77 ~~~dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spy-IV~~ygaF~~~~~~isI  155 (364)
T KOG0581|consen   77 SLSDLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPY-IVGFYGAFYSNGEEISI  155 (364)
T ss_pred             CHHHhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCC-eeeEeEEEEeCCceEEe
Confidence            445788889999999999999999999999999999643   34567899999999999988 9999999999985 999


Q ss_pred             EEeccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          275 VLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       275 V~E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||++|+|+.+.+.   +++.....|+.++++||.|||. ++||||||||+||||+ ..+.+||||||.++.+...  
T Consensus       156 ~mEYMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvN-skGeVKicDFGVS~~lvnS--  232 (364)
T KOG0581|consen  156 CMEYMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVN-SKGEVKICDFGVSGILVNS--  232 (364)
T ss_pred             ehhhcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeec-cCCCEEeccccccHHhhhh--
Confidence            9999999999998765   9999999999999999999996 8999999999999999 5678999999999752110  


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       233 --------------------------------------------------------------------------------  232 (364)
T KOG0581|consen  233 --------------------------------------------------------------------------------  232 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       233 --------------------------------------------------------------------------------  232 (364)
T KOG0581|consen  233 --------------------------------------------------------------------------------  232 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                          .....+||..|||||-+.+. .|+.++||||||++++|+++|++
T Consensus       233 ------------------------------------~a~tfvGT~~YMsPERi~g~-~Ys~~sDIWSLGLsllE~a~Grf  275 (364)
T KOG0581|consen  233 ------------------------------------IANTFVGTSAYMSPERISGE-SYSVKSDIWSLGLSLLELAIGRF  275 (364)
T ss_pred             ------------------------------------hcccccccccccChhhhcCC-cCCcccceecccHHHHHHhhCCC
Confidence                                                01267899999999999554 57999999999999999999999


Q ss_pred             CCCCCC--hHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhc-cCCccccc-CchhHHHHHH
Q 004835          591 PFFGDP--EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLIT-KRPDFLEV-IPSSLFDLVD  666 (728)
Q Consensus       591 PF~~~~--~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~dLi~  666 (728)
                      ||....  .....+++.                                       .+.. ..|.+++. +++++.+||.
T Consensus       276 P~~~~~~~~~~~~~Ll~---------------------------------------~Iv~~ppP~lP~~~fS~ef~~FV~  316 (364)
T KOG0581|consen  276 PYPPPNPPYLDIFELLC---------------------------------------AIVDEPPPRLPEGEFSPEFRSFVS  316 (364)
T ss_pred             CCCCcCCCCCCHHHHHH---------------------------------------HHhcCCCCCCCcccCCHHHHHHHH
Confidence            997641  111222111                                       1111 23445554 8999999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      .||..||.+|+++.|+|+|||++.....
T Consensus       317 ~CL~Kdp~~R~s~~qLl~Hpfi~~~~~~  344 (364)
T KOG0581|consen  317 CCLRKDPSERPSAKQLLQHPFIKKFEDP  344 (364)
T ss_pred             HHhcCCcccCCCHHHHhcCHHHhhcccc
Confidence            9999999999999999999999976543

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-46  Score=418.85  Aligned_cols=271  Identities=25%  Similarity=0.368  Sum_probs=234.1

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ...+++|.++.+||+|+||+|+++..+.+++.||||++++.     ...+....|.+|+.....+++++.++.+|++.++
T Consensus       364 ~~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~  443 (694)
T KOG0694|consen  364 PLTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEH  443 (694)
T ss_pred             cccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCe
Confidence            45678999999999999999999999999999999999864     3456678899999888855559999999999999


Q ss_pred             eEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          272 DCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      +|+||||+.||++..+.+  .+++..++.|+++|+.||.|||++||||||||.+||||| ..+.+||+|||+++...   
T Consensus       444 l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD-~eGh~kiADFGlcKe~m---  519 (694)
T KOG0694|consen  444 LFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLD-TEGHVKIADFGLCKEGM---  519 (694)
T ss_pred             EEEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEc-ccCcEEecccccccccC---
Confidence            999999999998544443  499999999999999999999999999999999999999 66679999999998411   


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       520 --------------------------------------------------------------------------------  519 (694)
T KOG0694|consen  520 --------------------------------------------------------------------------------  519 (694)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       520 --------------------------------------------------------------------------------  519 (694)
T KOG0694|consen  520 --------------------------------------------------------------------------------  519 (694)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                       +....++.++|||.|||||+|.+.. |+.++|||||||+||||+.|.
T Consensus       520 ---------------------------------~~g~~TsTfCGTpey~aPEil~e~~-Yt~aVDWW~lGVLlyeML~Gq  565 (694)
T KOG0694|consen  520 ---------------------------------GQGDRTSTFCGTPEFLAPEVLTEQS-YTRAVDWWGLGVLLYEMLVGE  565 (694)
T ss_pred             ---------------------------------CCCCccccccCChhhcChhhhccCc-ccchhhHHHHHHHHHHHHcCC
Confidence                                             0011344789999999999996665 799999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          590 TPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       590 ~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      +||.|++++.+.+-+.                                          ...+.++..++.++.++|+++|
T Consensus       566 ~PF~gddEee~FdsI~------------------------------------------~d~~~yP~~ls~ea~~il~~ll  603 (694)
T KOG0694|consen  566 SPFPGDDEEEVFDSIV------------------------------------------NDEVRYPRFLSKEAIAIMRRLL  603 (694)
T ss_pred             CCCCCCCHHHHHHHHh------------------------------------------cCCCCCCCcccHHHHHHHHHHh
Confidence            9999999987766441                                          2334455678999999999999


Q ss_pred             ccCCCCCCC-----HHHHhcCCCCccchhcchHhHhhhccccc
Q 004835          670 TVNPRLRIS-----AEDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       670 ~~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      +.||++|..     +++|.+||||+.|.|..-.++.+.+...+
T Consensus       604 ~k~p~kRLG~~e~d~~~i~~hpFFr~i~w~~L~~r~i~PPf~P  646 (694)
T KOG0694|consen  604 RKNPEKRLGSGERDAEDIKKHPFFRSIDWDDLLNRRIKPPFVP  646 (694)
T ss_pred             ccCcccccCCCCCCchhhhhCCccccCCHHHHhhccCCCCCCc
Confidence            999999996     57899999999999999999988886655

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=9.2e-47  Score=397.11  Aligned_cols=284  Identities=30%  Similarity=0.442  Sum_probs=229.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeCC-----
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCGD-----  270 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~-----  270 (728)
                      ...|..+++||+|+||+||+|+.+.+|+.||+|+++....    .....+|+.+|++++|+|+|+.+++++...+     
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~   89 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGI   89 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccccccc
Confidence            4568888899999999999999999999999999875433    4456899999999999999999999998877     


Q ss_pred             -eeEEEEeccCCCChHHHhh------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          271 -SDCFVLEHVKHDRPEVLKK------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       271 -~~~LV~E~~~~~~l~~l~~------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                       .+++|+||+..++-..+..      .++...++.+++||+.||+|||+++|+||||||+||||+ +.+.+||+|||+|+
T Consensus        90 ~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~-~~G~lKlaDFGlAr  168 (323)
T KOG0594|consen   90 GKLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLIS-SSGVLKLADFGLAR  168 (323)
T ss_pred             ceEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEEC-CCCcEeeeccchHH
Confidence             8999999999987666542      366678999999999999999999999999999999999 57789999999997


Q ss_pred             cccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCc
Q 004835          344 VGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGI  423 (728)
Q Consensus       344 ~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~  423 (728)
                      ...              +|                                                             
T Consensus       169 a~~--------------ip-------------------------------------------------------------  173 (323)
T KOG0594|consen  169 AFS--------------IP-------------------------------------------------------------  173 (323)
T ss_pred             Hhc--------------CC-------------------------------------------------------------
Confidence            410              00                                                             


Q ss_pred             cccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccc
Q 004835          424 TSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAV  503 (728)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (728)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (323)
T KOG0594|consen  174 --------------------------------------------------------------------------------  173 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHH
Q 004835          504 AGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLL  583 (728)
Q Consensus       504 ~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~  583 (728)
                                                               ....++.++|.+|||||+|+++.+|+..+||||+|||++
T Consensus       174 -----------------------------------------~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfa  212 (323)
T KOG0594|consen  174 -----------------------------------------MRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFA  212 (323)
T ss_pred             -----------------------------------------cccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHH
Confidence                                                     011346689999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCCh-HHHHHHHHHhCCc--hHHHH-HHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCch
Q 004835          584 YLMIGRTPFFGDPE-QNIKDIAKLRGSE--DLWEV-AKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS  659 (728)
Q Consensus       584 eLltG~~PF~~~~~-~~l~~i~~~~G~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (728)
                      ||+++++.|.|+++ +++..|++++|+|  ..|+. ..+.+....|+...         ....+...       ......
T Consensus       213 Em~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~---------~~~~l~~~-------~~~~~~  276 (323)
T KOG0594|consen  213 EMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWP---------GPKDLSSI-------LPKLDP  276 (323)
T ss_pred             HHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCC---------CccchHHh-------ccccCc
Confidence            99999999999887 7899999999985  55542 22222222222110         01112111       122336


Q ss_pred             hHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhcch
Q 004835          660 SLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       660 ~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      ...||+.+||+++|.+|+||+.+|.||||.++.....
T Consensus       277 ~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~~~~~  313 (323)
T KOG0594|consen  277 DGIELLSKLLQYDPAKRISAKGALTHPYFSELPEKSS  313 (323)
T ss_pred             cHHHHHHHHhccCcccCcCHHHHhcChhhcccccchh
Confidence            8999999999999999999999999999998865543

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=4.2e-46  Score=415.98  Aligned_cols=298  Identities=26%  Similarity=0.363  Sum_probs=235.3

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcC-C----CCceEEecceEEeCCeeEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFG-G----KNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~-h----~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      +|.|.+.||+|+||.|.+|.+..|++.||||+++... ...+...|+.+|..|+ |    ..++|+++++|...++.|||
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciV  266 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIV  266 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeee
Confidence            7899999999999999999999999999999998654 3456778999999998 2    34699999999999999999


Q ss_pred             EeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee-cCCCceEEEeeeccccccCCCC
Q 004835          276 LEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS-CKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       276 ~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld-~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +|.+..++.+.+..    .++...++.++.||+.||.+||+.||||+|||||||||. .....+||+|||.|.+....  
T Consensus       267 fELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~--  344 (586)
T KOG0667|consen  267 FELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQR--  344 (586)
T ss_pred             ehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecccccccCCc--
Confidence            99999988887764    388999999999999999999999999999999999996 23457999999999862111  


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       345 --------------------------------------------------------------------------------  344 (586)
T KOG0667|consen  345 --------------------------------------------------------------------------------  344 (586)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       345 --------------------------------------------------------------------------------  344 (586)
T KOG0667|consen  345 --------------------------------------------------------------------------------  344 (586)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                           ...++.+..|||||||+|.+ |+.++||||||||++||++|.+
T Consensus       345 -------------------------------------vytYiQSRfYRAPEVILGlp-Y~~~IDmWSLGCIlAEL~tG~P  386 (586)
T KOG0667|consen  345 -------------------------------------VYTYIQSRFYRAPEVILGLP-YDTAIDMWSLGCILAELFTGEP  386 (586)
T ss_pred             -------------------------------------ceeeeeccccccchhhccCC-CCCccceeehhhhHHhHhcCcc
Confidence                                                 01456788999999999987 5999999999999999999999


Q ss_pred             CCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCC----------CCCCchhhhh--hhccCC------
Q 004835          591 PFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSL----------PPINLPEWCK--LITKRP------  651 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~------  651 (728)
                      .|.|+++ +++..|++.+|.|+.|-+....+....|..........          +.........  .....|      
T Consensus       387 LfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l  466 (586)
T KOG0667|consen  387 LFPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSL  466 (586)
T ss_pred             ccCCCCHHHHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeecccccccchhhhhhhhhhcccccCCCCCccc
Confidence            9999988 79999999999988888766655544444311000000          0000000000  000111      


Q ss_pred             --cccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhcchHhH
Q 004835          652 --DFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQK  699 (728)
Q Consensus       652 --~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~  699 (728)
                        .........+.|||.+||.+||.+|+|+.++|+||||+..+..-..+.
T Consensus       467 ~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~~~~~~~~~~~  516 (586)
T KOG0667|consen  467 ESGLPKADDKLFIDFLKRCLEWDPAERITPAQALNHPFLTGTSLERRNQS  516 (586)
T ss_pred             chhcccccHHHHHHHHHHHhccCchhcCCHHHHhcCcccccccccccCCC
Confidence              011134467899999999999999999999999999997666555544

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-45  Score=391.40  Aligned_cols=258  Identities=28%  Similarity=0.413  Sum_probs=218.3

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ...+++|.+.+.||+|+||+||+|+++.++..||||.+....    ..+.+..|+.+|+.++|+| ||.+++|+..++++
T Consensus         6 ~~~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~n-IV~l~d~~~~~~~i   84 (429)
T KOG0595|consen    6 MRVVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPN-IVRLLDCIEDDDFI   84 (429)
T ss_pred             ccccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcc-eeeEEEEEecCCeE
Confidence            345679999999999999999999999999999999987653    3455789999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--C---CceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--A---VKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~---~~~kL~DFGlA~~  344 (728)
                      |||||||.||.|..+++   .+++..++.++.||+.||++||+++||||||||+||||+..  +   ..+||+|||+|+.
T Consensus        85 ~lVMEyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~  164 (429)
T KOG0595|consen   85 YLVMEYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARF  164 (429)
T ss_pred             EEEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhh
Confidence            99999999999988764   38999999999999999999999999999999999999843  1   4589999999986


Q ss_pred             ccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcc
Q 004835          345 GFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGIT  424 (728)
Q Consensus       345 ~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~  424 (728)
                      +..+..                                                                          
T Consensus       165 L~~~~~--------------------------------------------------------------------------  170 (429)
T KOG0595|consen  165 LQPGSM--------------------------------------------------------------------------  170 (429)
T ss_pred             CCchhH--------------------------------------------------------------------------
Confidence            421110                                                                          


Q ss_pred             ccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccc
Q 004835          425 SAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVA  504 (728)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (728)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (429)
T KOG0595|consen  171 --------------------------------------------------------------------------------  170 (429)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHH
Q 004835          505 GAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLY  584 (728)
Q Consensus       505 ~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~e  584 (728)
                                                                 ....+|||.||||||+ ...+|+.|+|+||+|+|+|+
T Consensus       171 -------------------------------------------a~tlcGSplYMAPEV~-~~~~YdAKADLWSiG~Ilyq  206 (429)
T KOG0595|consen  171 -------------------------------------------AETLCGSPLYMAPEVI-MSQQYDAKADLWSIGTILYQ  206 (429)
T ss_pred             -------------------------------------------HHHhhCCccccCHHHH-HhccccchhhHHHHHHHHHH
Confidence                                                       1145799999999999 45668999999999999999


Q ss_pred             HhcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHH
Q 004835          585 LMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL  664 (728)
Q Consensus       585 LltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dL  664 (728)
                      +++|++||...+..++...++.-.                                       ...+.++..++..+.+|
T Consensus       207 ~l~g~~Pf~a~t~~eL~~~~~k~~---------------------------------------~~~~~~~~~~s~~~~~L  247 (429)
T KOG0595|consen  207 CLTGKPPFDAETPKELLLYIKKGN---------------------------------------EIVPVLPAELSNPLREL  247 (429)
T ss_pred             HHhCCCCccccCHHHHHHHHhccc---------------------------------------cccCchhhhccCchhhh
Confidence            999999999988877765443100                                       01233445667788899


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCccch
Q 004835          665 VDKCLTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       665 i~~~L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      +...|..||..|.+..+.+.|++...-+
T Consensus       248 l~~ll~~~~~~~~~~~~~~~~~~l~~~p  275 (429)
T KOG0595|consen  248 LISLLQRNPKDRISFEDFFDHPFLAANP  275 (429)
T ss_pred             hhHHHhcCccccCchHHhhhhhhcccCc
Confidence            9999999999999999999999988655

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.8e-45  Score=390.92  Aligned_cols=316  Identities=24%  Similarity=0.393  Sum_probs=229.6

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      -.++.|++++.||.|.-|+||+|+.+.++..+|+|++.+..     ...+++.|-+||+.+.||. ++.+|..|+..++.
T Consensus        74 l~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPF-lPTLYa~fet~~~~  152 (459)
T KOG0610|consen   74 LGLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPF-LPTLYASFETDKYS  152 (459)
T ss_pred             cCHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCc-cchhhheeecccee
Confidence            34678999999999999999999999999999999997642     3456778999999999998 99999999999999


Q ss_pred             EEEEeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccC
Q 004835          273 CFVLEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFD  347 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~  347 (728)
                      |+|||||+||.|..+.++     +++..+++|+.+++.||+|||..|||+|||||+||||. +++++.|+||.|+.....
T Consensus       153 cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvr-edGHIMLsDFDLS~~~~~  231 (459)
T KOG0610|consen  153 CLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVR-EDGHIMLSDFDLSLRCPV  231 (459)
T ss_pred             EEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEe-cCCcEEeeeccccccCCC
Confidence            999999999999888743     99999999999999999999999999999999999999 778899999999975311


Q ss_pred             CCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccc
Q 004835          348 GSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAK  427 (728)
Q Consensus       348 ~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~  427 (728)
                                    .|.........            .....+.++.       ....-|..+...              
T Consensus       232 --------------~Pt~~~s~~~~------------~~~~~~~~~~-------~~~s~f~~r~~~--------------  264 (459)
T KOG0610|consen  232 --------------SPTLVKSSSPR------------SSGSQPSCRS-------RQPSCFSPRCLS--------------  264 (459)
T ss_pred             --------------CCeeeccCCCC------------CCCCCccccc-------ccccccccchhc--------------
Confidence                          01110000000            0000000000       000000000000              


Q ss_pred             cccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCC
Q 004835          428 EATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAG  507 (728)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (728)
                                                            .+    ++++.       .+....  .++|            
T Consensus       265 --------------------------------------~~----~~~~k-------~~~~~~--~~~p------------  281 (459)
T KOG0610|consen  265 --------------------------------------SS----KKRKK-------KDESAS--RSLP------------  281 (459)
T ss_pred             --------------------------------------cc----ccccc-------cccccc--ccch------------
Confidence                                                  00    00000       000000  0000            


Q ss_pred             CCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhc
Q 004835          508 LMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI  587 (728)
Q Consensus       508 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLlt  587 (728)
                                                    ...+....-+...+|||-.|.|||++.|.+| +.++|||+|||.+|||++
T Consensus       282 ------------------------------~~~aep~~~RSnSFVGThEYlAPEvI~G~GH-gsAVDWWtfGIflYEmLy  330 (459)
T KOG0610|consen  282 ------------------------------ELVAEPTGARSNSFVGTHEYLAPEVIRGEGH-GSAVDWWTFGIFLYEMLY  330 (459)
T ss_pred             ------------------------------hhhcCCCCccccccccccccccceeeecCCC-CchhhHHHHHHHHHHHHh
Confidence                                          0111223345668999999999999988887 999999999999999999


Q ss_pred             CCCCCCCCChH-HHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          588 GRTPFFGDPEQ-NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       588 G~~PF~~~~~~-~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      |.+||-|.+.. .+..|+               .....||+.                          ..++..++|||+
T Consensus       331 G~TPFKG~~~~~Tl~NIv---------------~~~l~Fp~~--------------------------~~vs~~akDLIr  369 (459)
T KOG0610|consen  331 GTTPFKGSNNKETLRNIV---------------GQPLKFPEE--------------------------PEVSSAAKDLIR  369 (459)
T ss_pred             CCCCcCCCCchhhHHHHh---------------cCCCcCCCC--------------------------CcchhHHHHHHH
Confidence            99999997764 454444               122333321                          256789999999


Q ss_pred             HhcccCCCCCCC----HHHHhcCCCCccchhcchH
Q 004835          667 KCLTVNPRLRIS----AEDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       667 ~~L~~dP~~Rpt----a~e~L~Hp~f~~~~~~~~~  697 (728)
                      ++|..||.+|+.    |+||-+||||++++|.+-.
T Consensus       370 ~LLvKdP~kRlg~~rGA~eIK~HpFF~gVnWaLir  404 (459)
T KOG0610|consen  370 KLLVKDPSKRLGSKRGAAEIKRHPFFEGVNWALIR  404 (459)
T ss_pred             HHhccChhhhhccccchHHhhcCccccCCChhhee
Confidence            999999999998    9999999999999999543

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-44  Score=396.16  Aligned_cols=252  Identities=27%  Similarity=0.369  Sum_probs=212.7

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-------CchhHHHHHHHHHHhcC-CCCceEEecceEEeCC
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-------ASKHYVSNELRMLERFG-GKNFIIKYEGCFKCGD  270 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-------~~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~~  270 (728)
                      ..++|.+.+.||+|+||.|++|.+..+|..||+|++...       .....+.+|+.+++.+. ||| |++++.++....
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~Hpn-I~~l~ev~~t~~   93 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPN-IIRLLEVFATPT   93 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCC-EeEEEEEEecCC
Confidence            457999999999999999999999999999999987653       23456778999999999 777 999999999999


Q ss_pred             eeEEEEeccCCCChHHHh-h--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccccc-
Q 004835          271 SDCFVLEHVKHDRPEVLK-K--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGF-  346 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~-~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~-  346 (728)
                      .+|+||||+.+|.+.... .  ++.+..++.+++||+.|++|+|++||+||||||+|||++...+++||+|||++.... 
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~  173 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISPG  173 (370)
T ss_pred             eEEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEeccccccccCC
Confidence            999999999986665543 3  489999999999999999999999999999999999999443889999999997521 


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ..                                                                              
T Consensus       174 ~~------------------------------------------------------------------------------  175 (370)
T KOG0583|consen  174 ED------------------------------------------------------------------------------  175 (370)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (370)
T KOG0583|consen  176 --------------------------------------------------------------------------------  175 (370)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccC-CCCCchhHHHHHHHHHHH
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQ-HQGPKLDIWSAGVTLLYL  585 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~-~~~~~~DIWSlG~il~eL  585 (728)
                                                             ......+||+.|+|||++.+.. +.+.++||||+||+||.|
T Consensus       176 ---------------------------------------~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~m  216 (370)
T KOG0583|consen  176 ---------------------------------------GLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVL  216 (370)
T ss_pred             ---------------------------------------CcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHH
Confidence                                                   0112567999999999997766 557999999999999999


Q ss_pred             hcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccC-chhHHHH
Q 004835          586 MIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVI-PSSLFDL  664 (728)
Q Consensus       586 ltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~dL  664 (728)
                      ++|+.||...+...+...+                                          ......++..+ +.++.+|
T Consensus       217 l~G~~PF~d~~~~~l~~ki------------------------------------------~~~~~~~p~~~~S~~~~~L  254 (370)
T KOG0583|consen  217 LCGRLPFDDSNVPNLYRKI------------------------------------------RKGEFKIPSYLLSPEARSL  254 (370)
T ss_pred             HhCCCCCCCccHHHHHHHH------------------------------------------hcCCccCCCCcCCHHHHHH
Confidence            9999999886654443321                                          12233445556 8999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCcc
Q 004835          665 VDKCLTVNPRLRISAEDALKHEFFAP  690 (728)
Q Consensus       665 i~~~L~~dP~~Rpta~e~L~Hp~f~~  690 (728)
                      |.+||.+||.+|+|+.++++||||+.
T Consensus       255 i~~mL~~~P~~R~t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  255 IEKMLVPDPSTRITLLEILEHPWFQK  280 (370)
T ss_pred             HHHHcCCCcccCCCHHHHhhChhhcc
Confidence            99999999999999999999999996

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=5.7e-44  Score=380.03  Aligned_cols=286  Identities=25%  Similarity=0.351  Sum_probs=217.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .++|++.+.||+|+||.||+|++..+++.||||++....   ....+.+|+.+++.+.|+| |+++++++......|+||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~lv~   82 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHAN-IVLLHDIIHTKETLTLVF   82 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCC-cCeEEEEEecCCeEEEEE
Confidence            468999999999999999999999999999999987432   2345678999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      ||+.++++..+..   .+++..++.++.||+.||+|||++||+||||||+|||++ +.+.+||+|||++.......    
T Consensus        83 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~-~~~~~kl~Dfg~~~~~~~~~----  157 (303)
T cd07869          83 EYVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLIS-DTGELKLADFGLARAKSVPS----  157 (303)
T ss_pred             ECCCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEC-CCCCEEECCCCcceeccCCC----
Confidence            9998877666543   378899999999999999999999999999999999998 66789999999986310000    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (303)
T cd07869         158 --------------------------------------------------------------------------------  157 (303)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (303)
T cd07869         158 --------------------------------------------------------------------------------  157 (303)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                      .......||+.|+|||++.+...++.++|||||||++|+|++|..||.
T Consensus       158 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~  205 (303)
T cd07869         158 --------------------------------HTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFP  205 (303)
T ss_pred             --------------------------------ccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                                            000123578999999999776667999999999999999999999998


Q ss_pred             CCCh--HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          594 GDPE--QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       594 ~~~~--~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      +..+  ..+..+....|.+............ .+..+     .+.......+.....     ....++.+.|||.+||++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~~dli~~mL~~  274 (303)
T cd07869         206 GMKDIQDQLERIFLVLGTPNEDTWPGVHSLP-HFKPE-----RFTLYSPKNLRQAWN-----KLSYVNHAEDLASKLLQC  274 (303)
T ss_pred             CCccHHHHHHHHHHHhCCCChhhccchhhcc-ccccc-----cccccCCccHHHHhh-----ccCCChHHHHHHHHHhcc
Confidence            7543  5667777767754322211111100 00000     000001111111110     012457899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccchhc
Q 004835          672 NPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      ||++|||+.|+|+||||++++..
T Consensus       275 dp~~R~s~~~~l~h~~f~~~~~~  297 (303)
T cd07869         275 FPKNRLSAQAALSHEYFSDLPPR  297 (303)
T ss_pred             CchhccCHHHHhcCcccccCChh
Confidence            99999999999999999988653

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1e-43  Score=375.68  Aligned_cols=279  Identities=25%  Similarity=0.380  Sum_probs=215.6

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      .+++|.+.+.||.|+||.||+|++..+++.||+|++....   ....+.+|+.++++++|+| |+++++++......|+|
T Consensus         3 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~lv   81 (288)
T cd07871           3 KLETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHAN-IVTLHDIIHTERCLTLV   81 (288)
T ss_pred             ccccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCC-EeeEEEEEcCCCeEEEE
Confidence            4678999999999999999999999999999999986432   2345779999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |||+.+++...+..   .+++..+..++.||+.||+|||++||+||||||+|||++ .++.+||+|||+++......   
T Consensus        82 ~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~-~~~~~kl~DfG~~~~~~~~~---  157 (288)
T cd07871          82 FEYLDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLIN-EKGELKLADFGLARAKSVPT---  157 (288)
T ss_pred             EeCCCcCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEC-CCCCEEECcCcceeeccCCC---
Confidence            99999865554433   268889999999999999999999999999999999998 66789999999986410000   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (288)
T cd07871         158 --------------------------------------------------------------------------------  157 (288)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (288)
T cd07871         158 --------------------------------------------------------------------------------  157 (288)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                       ......+||+.|+|||++.+...++.++||||+||++|+|++|++||
T Consensus       158 ---------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf  204 (288)
T cd07871         158 ---------------------------------KTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMF  204 (288)
T ss_pred             ---------------------------------ccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCC
Confidence                                             00012357899999999977666799999999999999999999999


Q ss_pred             CCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          593 FGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       593 ~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      .+.+. +.+..+++..|.+.......+... ..|...     ..+......+.       .....++.++.|||.+||++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~-------~~~~~~~~~~~dll~~mL~~  271 (288)
T cd07871         205 PGSTVKEELHLIFRLLGTPTEETWPGITSN-EEFRSY-----LFPQYRAQPLI-------NHAPRLDTDGIDLLSSLLLY  271 (288)
T ss_pred             CCCCHHHHHHHHHHHhCCCChHHhhccccc-hhhhcc-----ccCccCCCchH-------HhCCCCCHHHHHHHHHhcCc
Confidence            88765 567777887776433222111110 001000     00111111111       11235678999999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 004835          672 NPRLRISAEDALKHEFF  688 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f  688 (728)
                      ||.+||||+|+|+||||
T Consensus       272 dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         272 ETKSRISAEAALRHSYF  288 (288)
T ss_pred             CcccCCCHHHHhcCCCC
Confidence            99999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=1.5e-43  Score=398.38  Aligned_cols=280  Identities=23%  Similarity=0.390  Sum_probs=220.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeC--------Cee
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCG--------DSD  272 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~--------~~~  272 (728)
                      .+|.+.+.||+|+||.||+|.+..+++.||||++....  ....+|+.+++.++|+| |++++++|...        ..+
T Consensus        66 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~--~~~~~Ei~il~~l~h~n-iv~l~~~~~~~~~~~~~~~~~l  142 (440)
T PTZ00036         66 KSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP--QYKNRELLIMKNLNHIN-IIFLKDYYYTECFKKNEKNIFL  142 (440)
T ss_pred             CeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc--chHHHHHHHHHhcCCCC-CcceeeeEeecccccCCCceEE
Confidence            57999999999999999999999999999999875432  33457999999999999 88888776432        257


Q ss_pred             EEEEeccCCCChHHHh------hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccccc
Q 004835          273 CFVLEHVKHDRPEVLK------KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGF  346 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~------~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~  346 (728)
                      ++||||+++++...+.      ..+++..++.++.||+.||+|||++||+||||||+||||+.++..+||+|||+|+...
T Consensus       143 ~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~  222 (440)
T PTZ00036        143 NVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLL  222 (440)
T ss_pred             EEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccchhcc
Confidence            7999999987655443      2388899999999999999999999999999999999998666679999999997411


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ..                                                                              
T Consensus       223 ~~------------------------------------------------------------------------------  224 (440)
T PTZ00036        223 AG------------------------------------------------------------------------------  224 (440)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       225 --------------------------------------------------------------------------------  224 (440)
T PTZ00036        225 --------------------------------------------------------------------------------  224 (440)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                             ......+||+.|+|||++.+...++.++|||||||++|||+
T Consensus       225 ---------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell  265 (440)
T PTZ00036        225 ---------------------------------------QRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMI  265 (440)
T ss_pred             ---------------------------------------CCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence                                                   00013457999999999977767899999999999999999


Q ss_pred             cCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHH
Q 004835          587 IGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLV  665 (728)
Q Consensus       587 tG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi  665 (728)
                      +|.+||.+.+. +.+..+++.+|.+..........   .|..     ..++......|.      ..++...+.++.+||
T Consensus       266 tG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~---~~~~-----~~~~~~~~~~l~------~~~p~~~~~~~~~li  331 (440)
T PTZ00036        266 LGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNP---NYAD-----IKFPDVKPKDLK------KVFPKGTPDDAINFI  331 (440)
T ss_pred             hCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhch---hhhc-----ccCCccCchhHH------HHhccCCCHHHHHHH
Confidence            99999998765 67888999999876554443221   1110     112222222222      124456788999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          666 DKCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       666 ~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      .+||.+||.+||||.|+|+||||..+.+.
T Consensus       332 ~~~L~~dP~~R~ta~e~l~hp~f~~~~~~  360 (440)
T PTZ00036        332 SQFLKYEPLKRLNPIEALADPFFDDLRDP  360 (440)
T ss_pred             HHHCCCChhHCcCHHHHhCChhHHhhhcc
Confidence            99999999999999999999999987653

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-45  Score=366.81  Aligned_cols=254  Identities=30%  Similarity=0.472  Sum_probs=213.1

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      .+.|++.++||+|.|+.||++....+|+.+|+|++...    ..-+.+.+|++|-+.|+||+ |+++...+.+....|+|
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~-IvrL~~ti~~~~~~ylv   88 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPN-IVRLHDSIQEESFHYLV   88 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCc-EeehhhhhcccceeEEE
Confidence            35799999999999999999999999999999998743    34567889999999999999 99999999999999999


Q ss_pred             EeccCCCChHH-Hhhc--CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEeeeccccccCCCC
Q 004835          276 LEHVKHDRPEV-LKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       276 ~E~~~~~~l~~-l~~~--l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +|++.|+.+.. +..+  +++..+..+++||++||.|+|.+||||||+||+|+|+.++  +--+||+|||+|....++. 
T Consensus        89 Fe~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~-  167 (355)
T KOG0033|consen   89 FDLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGE-  167 (355)
T ss_pred             EecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeCCcc-
Confidence            99999987643 3333  7888899999999999999999999999999999999744  3457999999998532110 


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (355)
T KOG0033|consen  168 --------------------------------------------------------------------------------  167 (355)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (355)
T KOG0033|consen  168 --------------------------------------------------------------------------------  167 (355)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                          .....+|||+|||||++ +...|+.++|||+.|||||-|+.|.+
T Consensus       168 ------------------------------------~~~G~~GtP~fmaPEvv-rkdpy~kpvDiW~cGViLfiLL~G~~  210 (355)
T KOG0033|consen  168 ------------------------------------AWHGFAGTPGYLSPEVL-KKDPYSKPVDIWACGVILYILLVGYP  210 (355)
T ss_pred             ------------------------------------ccccccCCCcccCHHHh-hcCCCCCcchhhhhhHHHHHHHhCCC
Confidence                                                11256899999999999 55557999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.+...+++.+.. |                          -...+.+.|           +.+++++++|+++||.
T Consensus       211 PF~~~~~~rlye~I~~-g--------------------------~yd~~~~~w-----------~~is~~Ak~LvrrML~  252 (355)
T KOG0033|consen  211 PFWDEDQHRLYEQIKA-G--------------------------AYDYPSPEW-----------DTVTPEAKSLIRRMLT  252 (355)
T ss_pred             CCCCccHHHHHHHHhc-c--------------------------ccCCCCccc-----------CcCCHHHHHHHHHHhc
Confidence            9999887776665431 1                          011112223           6789999999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCcc
Q 004835          671 VNPRLRISAEDALKHEFFAP  690 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~  690 (728)
                      .||.+|+||.|+|+|||..+
T Consensus       253 ~dP~kRIta~EAL~HpWi~~  272 (355)
T KOG0033|consen  253 VNPKKRITADEALKHPWICN  272 (355)
T ss_pred             cChhhhccHHHHhCCchhcc
Confidence            99999999999999999986

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.2e-44  Score=396.40  Aligned_cols=255  Identities=23%  Similarity=0.344  Sum_probs=219.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      ++-|++++.||.|+-|.|-+|++..||+.+|||++.+.     .....+.+||.||+-+.||| |+.+|+++.+..++|+
T Consensus        11 iGpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~Hpn-Vl~LydVwe~~~~lyl   89 (786)
T KOG0588|consen   11 IGPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPN-VLRLYDVWENKQHLYL   89 (786)
T ss_pred             ccceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCC-eeeeeeeeccCceEEE
Confidence            56799999999999999999999999999999998754     23456889999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHh-h--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          275 VLEHVKHDRPEVLK-K--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       275 V~E~~~~~~l~~l~-~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      |+||+++|-+..+. +  .+++.++..+++||+.|+.|+|..+|+||||||+|+|||.+ +.+||+|||+|.+...+.  
T Consensus        90 vlEyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~-~nIKIADFGMAsLe~~gk--  166 (786)
T KOG0588|consen   90 VLEYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVK-NNIKIADFGMASLEVPGK--  166 (786)
T ss_pred             EEEecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcc-cCEeeeccceeecccCCc--
Confidence            99999988766553 3  49999999999999999999999999999999999999944 459999999997622111  


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (786)
T KOG0588|consen  167 --------------------------------------------------------------------------------  166 (786)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (786)
T KOG0588|consen  167 --------------------------------------------------------------------------------  166 (786)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                         -....||+|.|.|||++.|.++.|.++||||+|||||.|++|+.|
T Consensus       167 -----------------------------------lLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LP  211 (786)
T KOG0588|consen  167 -----------------------------------LLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLP  211 (786)
T ss_pred             -----------------------------------cccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCC
Confidence                                               111457999999999999999899999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          592 FFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       592 F~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      |.+++-..+..-++                                          ....+++..++.++.|||++||.+
T Consensus       212 FdDdNir~LLlKV~------------------------------------------~G~f~MPs~Is~eaQdLLr~ml~V  249 (786)
T KOG0588|consen  212 FDDDNIRVLLLKVQ------------------------------------------RGVFEMPSNISSEAQDLLRRMLDV  249 (786)
T ss_pred             CCCccHHHHHHHHH------------------------------------------cCcccCCCcCCHHHHHHHHHHhcc
Confidence            98766555543232                                          223456788999999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccchhcc
Q 004835          672 NPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      ||++|+|.+||++|||+..+....
T Consensus       250 Dp~~RiT~~eI~kHP~l~g~~~~~  273 (786)
T KOG0588|consen  250 DPSTRITTEEILKHPFLSGYTSLP  273 (786)
T ss_pred             CccccccHHHHhhCchhhcCCCCC
Confidence            999999999999999998766443

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-44  Score=393.11  Aligned_cols=253  Identities=27%  Similarity=0.418  Sum_probs=216.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ..|....+||+|+.|.||.|+...+++.||||.+...  ..++-+.+|+.+|+..+|+| ||.+++.|..++.+|+||||
T Consensus       273 ~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~N-iVnfl~Sylv~deLWVVMEy  351 (550)
T KOG0578|consen  273 SKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPN-IVNFLDSYLVGDELWVVMEY  351 (550)
T ss_pred             hhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchH-HHHHHHHhcccceeEEEEee
Confidence            4688888999999999999999999999999998754  44566889999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhhc--CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCC
Q 004835          279 VKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLP  356 (728)
Q Consensus       279 ~~~~~l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~  356 (728)
                      ++||.|..+...  +++.++..|.++++.||+|||.+||||||||.+|||++ .++.+||+|||+|..+...        
T Consensus       352 m~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~-~~g~vKltDFGFcaqi~~~--------  422 (550)
T KOG0578|consen  352 MEGGSLTDVVTKTRMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNILLT-MDGSVKLTDFGFCAQISEE--------  422 (550)
T ss_pred             cCCCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeEec-cCCcEEEeeeeeeeccccc--------
Confidence            999998887654  89999999999999999999999999999999999999 6667999999999752111        


Q ss_pred             CCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCcc
Q 004835          357 GTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPA  436 (728)
Q Consensus       357 ~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (728)
                                                                                                      
T Consensus       423 --------------------------------------------------------------------------------  422 (550)
T KOG0578|consen  423 --------------------------------------------------------------------------------  422 (550)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCc
Q 004835          437 ERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDL  516 (728)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  516 (728)
                                                                                                      
T Consensus       423 --------------------------------------------------------------------------------  422 (550)
T KOG0578|consen  423 --------------------------------------------------------------------------------  422 (550)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCC
Q 004835          517 SDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP  596 (728)
Q Consensus       517 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~  596 (728)
                                                  ..+.+..||||+|||||++.+.. |++++||||||++++||+-|.+||..++
T Consensus       423 ----------------------------~~KR~TmVGTPYWMAPEVvtrk~-YG~KVDIWSLGIMaIEMveGEPPYlnE~  473 (550)
T KOG0578|consen  423 ----------------------------QSKRSTMVGTPYWMAPEVVTRKP-YGPKVDIWSLGIMAIEMVEGEPPYLNEN  473 (550)
T ss_pred             ----------------------------cCccccccCCCCccchhhhhhcc-cCccccchhhhhHHHHHhcCCCCccCCC
Confidence                                        01223678999999999997666 6999999999999999999999999766


Q ss_pred             h-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCC
Q 004835          597 E-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL  675 (728)
Q Consensus       597 ~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~  675 (728)
                      + ..++. +...|++.                                       ...++.++..++|||++||+.|+++
T Consensus       474 PlrAlyL-Ia~ng~P~---------------------------------------lk~~~klS~~~kdFL~~cL~~dv~~  513 (550)
T KOG0578|consen  474 PLRALYL-IATNGTPK---------------------------------------LKNPEKLSPELKDFLDRCLVVDVEQ  513 (550)
T ss_pred             hHHHHHH-HhhcCCCC---------------------------------------cCCccccCHHHHHHHHHHhhcchhc
Confidence            6 34443 33344332                                       2334678999999999999999999


Q ss_pred             CCCHHHHhcCCCCccch
Q 004835          676 RISAEDALKHEFFAPCH  692 (728)
Q Consensus       676 Rpta~e~L~Hp~f~~~~  692 (728)
                      |++|.|+|+||||+...
T Consensus       514 RasA~eLL~HpFl~~a~  530 (550)
T KOG0578|consen  514 RASAKELLEHPFLKMAK  530 (550)
T ss_pred             CCCHHHHhcChhhhhcC
Confidence            99999999999996544

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=8.4e-43  Score=366.68  Aligned_cols=279  Identities=29%  Similarity=0.441  Sum_probs=215.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....    ....+.+|+.++..++|+| |+++++++...+..|+||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~   79 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQEN-IVELKEAFRRRGKLYLVF   79 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCcc-ccchhhhEecCCEEEEEE
Confidence            47999999999999999999999999999999986432    2456778999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      ||+.++++..+..   .+++..++.++.||+.||.|||+.||+||||||+|||++ .++.+||+|||++.......    
T Consensus        80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~-~~~~~kl~Dfg~~~~~~~~~----  154 (287)
T cd07848          80 EYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLIS-HNDVLKLCDFGFARNLSEGS----  154 (287)
T ss_pred             ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEc-CCCcEEEeeccCcccccccc----
Confidence            9999998876653   488899999999999999999999999999999999998 66789999999986421000    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (287)
T cd07848         155 --------------------------------------------------------------------------------  154 (287)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (287)
T cd07848         155 --------------------------------------------------------------------------------  154 (287)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                     ........||+.|+|||++.+.. ++.++|||||||++|||++|++||.
T Consensus       155 -------------------------------~~~~~~~~~~~~y~aPE~~~~~~-~~~~~DiwslGvil~el~~g~~pf~  202 (287)
T cd07848         155 -------------------------------NANYTEYVATRWYRSPELLLGAP-YGKAVDMWSVGCILGELSDGQPLFP  202 (287)
T ss_pred             -------------------------------cccccccccccccCCcHHHcCCC-CCCchhHHhHHHHHHHHHhCCCCCC
Confidence                                           00011345899999999996655 6999999999999999999999998


Q ss_pred             CCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          594 GDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       594 ~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      +.+. +.+..+....|+........... ...+..     ...+...     ........+...++.++.|||.+||.+|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~s~~~~dll~~~L~~~  271 (287)
T cd07848         203 GESEIDQLFTIQKVLGPLPAEQMKLFYS-NPRFHG-----LRFPAVN-----HPQSLERRYLGILSGVLLDLMKNLLKLN  271 (287)
T ss_pred             CCCHHHHHHHHHHhhCCCCHHHHHhhhc-cchhcc-----cccCccc-----CcccHHHhhhcccCHHHHHHHHHHccCC
Confidence            8665 45666666677633222211111 111100     0000000     0000011233467889999999999999


Q ss_pred             CCCCCCHHHHhcCCCC
Q 004835          673 PRLRISAEDALKHEFF  688 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f  688 (728)
                      |++|||++|+|+||||
T Consensus       272 P~~R~s~~~~l~hp~f  287 (287)
T cd07848         272 PTDRYLTEQCLNHPAF  287 (287)
T ss_pred             cccCCCHHHHhcCCCC
Confidence            9999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=4.6e-43  Score=370.13  Aligned_cols=268  Identities=22%  Similarity=0.325  Sum_probs=215.9

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .|++.+.||+|+||.||+|.+..+|+.||+|++....     ....+.+|+.++..+.|++ |+++++++...+..|+||
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~-iv~~~~~~~~~~~~~lv~   79 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRF-VVSLAYAYETKDALCLVL   79 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCc-EEEEEEEEccCCeEEEEE
Confidence            4889999999999999999999999999999876432     2235678999999999998 999999999999999999


Q ss_pred             eccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          277 EHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       277 E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      ||+.++++..+..     .+++..+..++.||+.||+|||++||+||||||+|||++ +++.++|+|||++.......  
T Consensus        80 e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~-~~~~~kl~Dfg~~~~~~~~~--  156 (285)
T cd05631          80 TIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLD-DRGHIRISDLGLAVQIPEGE--  156 (285)
T ss_pred             EecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEEC-CCCCEEEeeCCCcEEcCCCC--
Confidence            9999998865432     378899999999999999999999999999999999998 66779999999986411000  


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (285)
T cd05631         157 --------------------------------------------------------------------------------  156 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (285)
T cd05631         157 --------------------------------------------------------------------------------  156 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                         .....+||+.|+|||++.+. .++.++|||||||++|+|++|+.|
T Consensus       157 -----------------------------------~~~~~~g~~~y~aPE~~~~~-~~~~~~DvwslGvil~el~~g~~p  200 (285)
T cd05631         157 -----------------------------------TVRGRVGTVGYMAPEVINNE-KYTFSPDWWGLGCLIYEMIQGQSP  200 (285)
T ss_pred             -----------------------------------eecCCCCCCCccCHhhhcCC-CCCcccCchhHHHHHHHHHhCCCC
Confidence                                               00123589999999999655 469999999999999999999999


Q ss_pred             CCCCChHHHHH-HHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          592 FFGDPEQNIKD-IAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       592 F~~~~~~~l~~-i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      |.+........ +....                                       ......++..++..+.+||.+||.
T Consensus       201 f~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~s~~~~~li~~~l~  241 (285)
T cd05631         201 FRKRKERVKREEVDRRV---------------------------------------KEDQEEYSEKFSEDAKSICRMLLT  241 (285)
T ss_pred             CCCCCcchhHHHHHHHh---------------------------------------hcccccCCccCCHHHHHHHHHHhh
Confidence            98765422111 11100                                       011123345678899999999999


Q ss_pred             cCCCCCCC-----HHHHhcCCCCccchhcchHhHhhhcccccC
Q 004835          671 VNPRLRIS-----AEDALKHEFFAPCHEMLRKQKLLRQGSSID  708 (728)
Q Consensus       671 ~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~~~~~~~~  708 (728)
                      .||.+||+     ++++++||||.++.+..-.++++.+...+|
T Consensus       242 ~~P~~R~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~  284 (285)
T cd05631         242 KNPKERLGCRGNGAAGVKQHPIFKNINFKRLEANMLEPPFCPD  284 (285)
T ss_pred             cCHHHhcCCCCCCHHHHhcCHhhcCCCHHHHHhCcCCcCCCCC
Confidence            99999997     999999999999998877777776655443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=3e-44  Score=391.14  Aligned_cols=268  Identities=27%  Similarity=0.361  Sum_probs=221.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ++|.+.+.||+|+||.||+|+.+.+.+.||||.+.+..    ..+.+.+|++|++.++|+| |+.++++|++..++|+|.
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpn-iv~m~esfEt~~~~~vVt   80 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPN-IVEMLESFETSAHLWVVT   80 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcc-hhhHHHhhcccceEEEEe
Confidence            57999999999999999999999999999999987543    2345889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHh--hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcccc
Q 004835          277 EHVKHDRPEVLK--KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQAT  354 (728)
Q Consensus       277 E~~~~~~l~~l~--~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~  354 (728)
                      ||+.|++...+.  ..++++.++.|+.+++.||.|||+.+|+|||+||.|||++ .++.+|+||||+|+.+....     
T Consensus        81 e~a~g~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~-~~~~~KlcdFg~Ar~m~~~t-----  154 (808)
T KOG0597|consen   81 EYAVGDLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLE-KGGTLKLCDFGLARAMSTNT-----  154 (808)
T ss_pred             hhhhhhHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceeeec-CCCceeechhhhhhhcccCc-----
Confidence            999995544443  3499999999999999999999999999999999999999 88889999999998632110     


Q ss_pred             CCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCC
Q 004835          355 LPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRT  434 (728)
Q Consensus       355 ~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (808)
T KOG0597|consen  155 --------------------------------------------------------------------------------  154 (808)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCC
Q 004835          435 PAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPS  514 (728)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (808)
T KOG0597|consen  155 --------------------------------------------------------------------------------  154 (808)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 004835          515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG  594 (728)
Q Consensus       515 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~  594 (728)
                                                     ...+..-|||.|||||++. ...|+..+|+||+|||+|||++|++||+.
T Consensus       155 -------------------------------~vltsikGtPlYmAPElv~-e~pyd~~sDlWslGcilYE~~~G~PPF~a  202 (808)
T KOG0597|consen  155 -------------------------------SVLTSIKGTPLYMAPELVE-EQPYDHTSDLWSLGCILYELYVGQPPFYA  202 (808)
T ss_pred             -------------------------------eeeeeccCcccccCHHHHc-CCCccchhhHHHHHHHHHHHhcCCCCchH
Confidence                                           0112345999999999995 45579999999999999999999999998


Q ss_pred             CChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCC
Q 004835          595 DPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR  674 (728)
Q Consensus       595 ~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~  674 (728)
                      .+-.++.+.+                                          ....+.++...+..+.+||..+|..||.
T Consensus       203 ~si~~Lv~~I------------------------------------------~~d~v~~p~~~S~~f~nfl~gLL~kdP~  240 (808)
T KOG0597|consen  203 RSITQLVKSI------------------------------------------LKDPVKPPSTASSSFVNFLQGLLIKDPA  240 (808)
T ss_pred             HHHHHHHHHH------------------------------------------hcCCCCCcccccHHHHHHHHHHhhcChh
Confidence            7665444322                                          1223445567889999999999999999


Q ss_pred             CCCCHHHHhcCCCCccchhcchHhHhhhcccccCC
Q 004835          675 LRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDN  709 (728)
Q Consensus       675 ~Rpta~e~L~Hp~f~~~~~~~~~~~~~~~~~~~~~  709 (728)
                      +|+|+.+++.|||.+.-......+.....++.+.+
T Consensus       241 ~RltW~~Ll~HpF~k~~~~~~~~~~~~a~~spftn  275 (808)
T KOG0597|consen  241 QRLTWTDLLGHPFWKGKINIAELPAQVAFDSPFTN  275 (808)
T ss_pred             hcccHHHHhcChHHhhhhhhhcccccccccCcccc
Confidence            99999999999999875555444444444444433

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.9e-43  Score=371.35  Aligned_cols=255  Identities=25%  Similarity=0.296  Sum_probs=211.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||.||+|.+..+|+.||||++...     .....+.+|+.++..+.|+| |+++++++.+....|+|
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~lv   79 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPF-IIRLFWTEHDQRFLYML   79 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCc-HhhhHhhhccCCeEEEE
Confidence            4799999999999999999999999999999998643     22345788999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |||+.++.+..+..   .+++..+..++.||+.||+|||++||+||||||+|||++ .++.++|+|||++......    
T Consensus        80 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~-~~~~~kl~Dfg~~~~~~~~----  154 (291)
T cd05612          80 MEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLD-KEGHIKLTDFGFAKKLRDR----  154 (291)
T ss_pred             EeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEEC-CCCCEEEEecCcchhccCC----
Confidence            99999988876643   388899999999999999999999999999999999998 6678999999998641000    


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (291)
T cd05612         155 --------------------------------------------------------------------------------  154 (291)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (291)
T cd05612         155 --------------------------------------------------------------------------------  154 (291)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                         ....+||+.|+|||++.+.. ++.++|||||||++|+|++|+.||
T Consensus       155 -----------------------------------~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlG~il~~l~~g~~pf  198 (291)
T cd05612         155 -----------------------------------TWTLCGTPEYLAPEVIQSKG-HNKAVDWWALGILIYEMLVGYPPF  198 (291)
T ss_pred             -----------------------------------cccccCChhhcCHHHHcCCC-CCchhhHHHHHHHHHHHHhCCCCC
Confidence                                               00235899999999986554 699999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       593 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      .+.....+...+.                                          .....++..++..+.+||.+||..|
T Consensus       199 ~~~~~~~~~~~i~------------------------------------------~~~~~~~~~~~~~~~~li~~~l~~d  236 (291)
T cd05612         199 FDDNPFGIYEKIL------------------------------------------AGKLEFPRHLDLYAKDLIKKLLVVD  236 (291)
T ss_pred             CCCCHHHHHHHHH------------------------------------------hCCcCCCccCCHHHHHHHHHHcCCC
Confidence            8876644433221                                          1122334556789999999999999


Q ss_pred             CCCCCC-----HHHHhcCCCCccchhcchHhH
Q 004835          673 PRLRIS-----AEDALKHEFFAPCHEMLRKQK  699 (728)
Q Consensus       673 P~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~  699 (728)
                      |.+|++     ++++++||||..+.+....+.
T Consensus       237 p~~R~~~~~~~~~~~l~h~~~~~~~~~~~~~~  268 (291)
T cd05612         237 RTRRLGNMKNGADDVKNHRWFKSVDWDDVPQR  268 (291)
T ss_pred             HHHccCCccCCHHHHhcCccccCCCHHHHhcC
Confidence            999995     999999999998887654443

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=5.8e-43  Score=377.99  Aligned_cols=256  Identities=26%  Similarity=0.350  Sum_probs=212.1

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|++.+.||+|+||.||+|++..+|+.||||++...     .....+.+|+.++.+++|+| |+++++++..++..|
T Consensus        16 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~   94 (329)
T PTZ00263         16 KLSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPF-IVNMMCSFQDENRVY   94 (329)
T ss_pred             CchheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCC-CCcEEEEEEcCCEEE
Confidence            457899999999999999999999999999999998643     23356789999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.++.+.....   .+++..+..++.||+.||+|||++||+||||||+||||+ .++.+||+|||++......  
T Consensus        95 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~-~~~~~kl~Dfg~~~~~~~~--  171 (329)
T PTZ00263         95 FLLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLD-NKGHVKVTDFGFAKKVPDR--  171 (329)
T ss_pred             EEEcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEC-CCCCEEEeeccCceEcCCC--
Confidence            9999999988766543   378899999999999999999999999999999999999 6678999999998641000  


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (329)
T PTZ00263        172 --------------------------------------------------------------------------------  171 (329)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (329)
T PTZ00263        172 --------------------------------------------------------------------------------  171 (329)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                           ....+||+.|+|||++.+.. ++.++|||||||++|+|++|..
T Consensus       172 -------------------------------------~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~elltg~~  213 (329)
T PTZ00263        172 -------------------------------------TFTLCGTPEYLAPEVIQSKG-HGKAVDWWTMGVLLYEFIAGYP  213 (329)
T ss_pred             -------------------------------------cceecCChhhcCHHHHcCCC-CCCcceeechHHHHHHHHcCCC
Confidence                                                 00235899999999996554 5899999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.....+.+.+.                                          ..+..++..++..+.+||.+||.
T Consensus       214 pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~~~~~~~li~~~L~  251 (329)
T PTZ00263        214 PFFDDTPFRIYEKIL------------------------------------------AGRLKFPNWFDGRARDLVKGLLQ  251 (329)
T ss_pred             CCCCCCHHHHHHHHh------------------------------------------cCCcCCCCCCCHHHHHHHHHHhh
Confidence            998876544332221                                          11122334567889999999999


Q ss_pred             cCCCCCCC-----HHHHhcCCCCccchhcchHh
Q 004835          671 VNPRLRIS-----AEDALKHEFFAPCHEMLRKQ  698 (728)
Q Consensus       671 ~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~  698 (728)
                      .||.+|++     ++++++||||+++.+....+
T Consensus       252 ~dP~~R~~~~~~~~~~ll~hp~f~~~~~~~~~~  284 (329)
T PTZ00263        252 TDHTKRLGTLKGGVADVKNHPYFHGANWDKLYA  284 (329)
T ss_pred             cCHHHcCCCCCCCHHHHhcCCccCCCCHHHHHh
Confidence            99999997     79999999999877665443

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-43  Score=380.79  Aligned_cols=261  Identities=31%  Similarity=0.421  Sum_probs=210.4

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----------------chhHHHHHHHHHHhcCCCCceEE
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----------------SKHYVSNELRMLERFGGKNFIIK  261 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----------------~~~~~~~Ei~iL~~L~h~n~Ivk  261 (728)
                      ..++.|+++..||+|.||.|-+|++..+++.||||++.+..                ..+.+.+||.||+++.|+| ||+
T Consensus        94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~n-VV~  172 (576)
T KOG0585|consen   94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPN-VVK  172 (576)
T ss_pred             eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcC-eeE
Confidence            35789999999999999999999999999999999987421                1246889999999999998 999


Q ss_pred             ecceEEeC--CeeEEEEeccCCCChHHHh--hc-CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEE
Q 004835          262 YEGCFKCG--DSDCFVLEHVKHDRPEVLK--KE-IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYL  336 (728)
Q Consensus       262 l~~~~~~~--~~~~LV~E~~~~~~l~~l~--~~-l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL  336 (728)
                      |+.+..+.  +.+|||+|||..|...+.-  +. +++.+++.|++.++.||+|||.+|||||||||+|+||+ +++++||
T Consensus       173 LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~-~~g~VKI  251 (576)
T KOG0585|consen  173 LIEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLS-SDGTVKI  251 (576)
T ss_pred             EEEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEc-CCCcEEe
Confidence            99998764  5799999999988765542  23 88999999999999999999999999999999999999 6688999


Q ss_pred             EeeeccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccC
Q 004835          337 IDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQ  416 (728)
Q Consensus       337 ~DFGlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~  416 (728)
                      +|||.+.....+..                                                        -|        
T Consensus       252 sDFGVs~~~~~~~~--------------------------------------------------------~~--------  267 (576)
T KOG0585|consen  252 SDFGVSNEFPQGSD--------------------------------------------------------EG--------  267 (576)
T ss_pred             eccceeeecccCCc--------------------------------------------------------cc--------
Confidence            99999975211000                                                        00        


Q ss_pred             CCCCCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCC
Q 004835          417 GADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPL  496 (728)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  496 (728)
                                                                                                      
T Consensus       268 --------------------------------------------------------------------------------  267 (576)
T KOG0585|consen  268 --------------------------------------------------------------------------------  267 (576)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhc---cCCCCCch
Q 004835          497 HSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFR---SQHQGPKL  573 (728)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~---~~~~~~~~  573 (728)
                                                                     ........+|||.|+|||.+.+   ....+.+.
T Consensus       268 -----------------------------------------------~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~  300 (576)
T KOG0585|consen  268 -----------------------------------------------SDDQLSRTVGTPAFFAPELCSGGNSFSYSGFAL  300 (576)
T ss_pred             -----------------------------------------------cHHHHhhcCCCccccchHhhcCCCCccccchhh
Confidence                                                           0000113579999999999876   33458899


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcc
Q 004835          574 DIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDF  653 (728)
Q Consensus       574 DIWSlG~il~eLltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  653 (728)
                      ||||+||+||.|+.|+.||.++....+++-              +.+....||..                         
T Consensus       301 DiWalGVTLYCllfG~~PF~~~~~~~l~~K--------------Ivn~pL~fP~~-------------------------  341 (576)
T KOG0585|consen  301 DIWALGVTLYCLLFGQLPFFDDFELELFDK--------------IVNDPLEFPEN-------------------------  341 (576)
T ss_pred             hhhhhhhhHHHhhhccCCcccchHHHHHHH--------------HhcCcccCCCc-------------------------
Confidence            999999999999999999998876555432              22223333321                         


Q ss_pred             cccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccc
Q 004835          654 LEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPC  691 (728)
Q Consensus       654 ~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~  691 (728)
                       ..+...+.|||.+||..||++|++..++..|||...-
T Consensus       342 -pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~~  378 (576)
T KOG0585|consen  342 -PEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTRD  378 (576)
T ss_pred             -ccccHHHHHHHHHHhhcChhheeehhhheecceeccC
Confidence             2467899999999999999999999999999998754

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-42  Score=370.96  Aligned_cols=292  Identities=25%  Similarity=0.319  Sum_probs=232.6

Q ss_pred             cccccccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceE
Q 004835          190 DQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCF  266 (728)
Q Consensus       190 ~~~~~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~  266 (728)
                      ..+.....++.+.|++.++||.|..++||+|+...++..||||++..+.   ....+.+|+..++.++||| |++++.+|
T Consensus        15 ~~~~~~~p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPN-Iv~~~~sF   93 (516)
T KOG0582|consen   15 SSSEKEFPLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPN-IVTYHCSF   93 (516)
T ss_pred             ccccccCCCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCC-cceEEEEE
Confidence            3444556678899999999999999999999999999999999987543   3467889999999999999 99999999


Q ss_pred             EeCCeeEEEEeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeec
Q 004835          267 KCGDSDCFVLEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNL  341 (728)
Q Consensus       267 ~~~~~~~LV~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGl  341 (728)
                      ..+..+|+||.||.+|++..+.+.     +.+..+..|++++++||.|||.+|.||||||+.||||+ .++.+||+|||.
T Consensus        94 vv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~-~dG~VkLadFgv  172 (516)
T KOG0582|consen   94 VVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILID-SDGTVKLADFGV  172 (516)
T ss_pred             EecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEc-CCCcEEEcCcee
Confidence            999999999999999998777643     88999999999999999999999999999999999999 777899999999


Q ss_pred             cccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCC
Q 004835          342 AMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGS  421 (728)
Q Consensus       342 A~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~  421 (728)
                      +..+.+..                                                           .+.          
T Consensus       173 sa~l~~~G-----------------------------------------------------------~R~----------  183 (516)
T KOG0582|consen  173 SASLFDSG-----------------------------------------------------------DRQ----------  183 (516)
T ss_pred             eeeecccC-----------------------------------------------------------cee----------
Confidence            86532110                                                           000          


Q ss_pred             CccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCc
Q 004835          422 GITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGI  501 (728)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (728)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (516)
T KOG0582|consen  184 --------------------------------------------------------------------------------  183 (516)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhc-cCCCCCchhHHHHHH
Q 004835          502 AVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFR-SQHQGPKLDIWSAGV  580 (728)
Q Consensus       502 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~-~~~~~~~~DIWSlG~  580 (728)
                                                                 ..+....+||+.|||||++.+ ...|+.|+||||||+
T Consensus       184 -------------------------------------------~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGI  220 (516)
T KOG0582|consen  184 -------------------------------------------VTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGI  220 (516)
T ss_pred             -------------------------------------------eEeeccccCcccccChHHhhhcccCccchhhhhhhhH
Confidence                                                       001136789999999999754 344899999999999


Q ss_pred             HHHHHhcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchh
Q 004835          581 TLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS  660 (728)
Q Consensus       581 il~eLltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (728)
                      +..||.+|..||..-.+-.+. ++++.|.++....                               .....+-....+..
T Consensus       221 TA~ELA~G~aPf~k~pPmkvL-l~tLqn~pp~~~t-------------------------------~~~~~d~~k~~~ks  268 (516)
T KOG0582|consen  221 TACELAHGHAPFSKYPPMKVL-LLTLQNDPPTLLT-------------------------------SGLDKDEDKKFSKS  268 (516)
T ss_pred             HHHHHhcCCCCcccCChHHHH-HHHhcCCCCCccc-------------------------------ccCChHHhhhhcHH
Confidence            999999999999876664322 2344443321110                               00111122345679


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCCccchhcchHhHhhhccccc
Q 004835          661 LFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       661 l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      ++.+|..||..||.+||||+++|+|+||+.+....-....++++...
T Consensus       269 f~e~i~~CL~kDP~kRptAskLlkh~FFk~~k~~~~~~~~~l~~l~~  315 (516)
T KOG0582|consen  269 FREMIALCLVKDPSKRPTASKLLKHAFFKKAKSKEYLVKKLLQSLPP  315 (516)
T ss_pred             HHHHHHHHhhcCcccCCCHHHHhccHHHhhccchhhcchhhhccCCc
Confidence            99999999999999999999999999999988766665555555544

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-43  Score=374.33  Aligned_cols=259  Identities=27%  Similarity=0.420  Sum_probs=208.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc--hhHHHHHHHHHHhcCCCCceEEecceEEeCC--eeEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEGCFKCGD--SDCFV  275 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~--~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~--~~~LV  275 (728)
                      ..+|...+.||+|+||.||++.+..+|..+|||.+.....  .+.+.+|+.+|.+++|++ ||++++......  .++++
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~-IV~~~G~~~~~~~~~~~i~   94 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPN-IVQYYGSSSSRENDEYNIF   94 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCC-EEeeCCccccccCeeeEee
Confidence            3468889999999999999999998899999998765421  345789999999999998 999999755444  69999


Q ss_pred             EeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          276 LEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       276 ~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      |||+.+|++..+..    .+++..++.+++||++||+|||++|||||||||+|||++..++.+||+|||+++.....   
T Consensus        95 mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~---  171 (313)
T KOG0198|consen   95 MEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESK---  171 (313)
T ss_pred             eeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCccccccccc---
Confidence            99999999988765    38999999999999999999999999999999999999943678999999998742110   


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (313)
T KOG0198|consen  172 --------------------------------------------------------------------------------  171 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (313)
T KOG0198|consen  172 --------------------------------------------------------------------------------  171 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                    ...........||+.|||||++......+.++|||||||++.||+||.+|
T Consensus       172 ------------------------------~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~P  221 (313)
T KOG0198|consen  172 ------------------------------GTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPP  221 (313)
T ss_pred             ------------------------------cccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCc
Confidence                                          00001122567999999999996433334599999999999999999999


Q ss_pred             CCCC-Ch-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          592 FFGD-PE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       592 F~~~-~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      |... .. ..+..+..                                         ....|.+++.++.++.|||.+||
T Consensus       222 W~~~~~~~~~~~~ig~-----------------------------------------~~~~P~ip~~ls~~a~~Fl~~C~  260 (313)
T KOG0198|consen  222 WSEFFEEAEALLLIGR-----------------------------------------EDSLPEIPDSLSDEAKDFLRKCF  260 (313)
T ss_pred             chhhcchHHHHHHHhc-----------------------------------------cCCCCCCCcccCHHHHHHHHHHh
Confidence            9763 11 11211110                                         01124566779999999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchh
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      ..||++||||+++|+|||.+....
T Consensus       261 ~~~p~~Rpta~eLL~hpf~~~~~~  284 (313)
T KOG0198|consen  261 KRDPEKRPTAEELLEHPFLKQNSI  284 (313)
T ss_pred             hcCcccCcCHHHHhhChhhhcccc
Confidence            999999999999999999987665

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=3.9e-42  Score=370.05  Aligned_cols=287  Identities=24%  Similarity=0.395  Sum_probs=214.7

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeC-----Cee
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCG-----DSD  272 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~-----~~~  272 (728)
                      +|++.+.||+|+||.||+|++..+|+.||||++...    .....+.+|+.+++.++|+| |+++++++...     ...
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~~~~~   79 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPD-IVEIKHIMLPPSRREFKDI   79 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCC-EeeecceEeccCCCCCceE
Confidence            589999999999999999999999999999988642    22345789999999999999 99999887543     357


Q ss_pred             EEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          273 CFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      |+||||+++++...+..  .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||+++.......
T Consensus        80 ~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~-~~~~~kL~Dfg~~~~~~~~~~  158 (338)
T cd07859          80 YVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILAN-ADCKLKICDFGLARVAFNDTP  158 (338)
T ss_pred             EEEEecCCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEC-CCCcEEEccCccccccccccC
Confidence            99999998765555443  389999999999999999999999999999999999999 667899999999864110000


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (338)
T cd07859         159 --------------------------------------------------------------------------------  158 (338)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (338)
T cd07859         159 --------------------------------------------------------------------------------  158 (338)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhcc-CCCCCchhHHHHHHHHHHHhcCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRS-QHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~-~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                       ........+||+.|+|||++.+. ..++.++|||||||++|+|++|+
T Consensus       159 ---------------------------------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~  205 (338)
T cd07859         159 ---------------------------------TAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGK  205 (338)
T ss_pred             ---------------------------------ccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCC
Confidence                                             00011245689999999998542 45689999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCC-CCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHH
Q 004835          590 TPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRES-SFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK  667 (728)
Q Consensus       590 ~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~  667 (728)
                      +||.+.+. ..+..+....|.+.......+..... .+...+   ....+..   +.       .....+++.+.+||.+
T Consensus       206 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~---~~-------~~~~~~~~~~~~li~~  272 (338)
T cd07859         206 PLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSM---RKKQPVP---FS-------QKFPNADPLALRLLER  272 (338)
T ss_pred             CCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhh---cccCCCc---hH-------HhcCCCChHHHHHHHH
Confidence            99988765 45666667777654433333221100 000000   0000000   00       0113467889999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCccchhcch
Q 004835          668 CLTVNPRLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       668 ~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      ||..||++|||++|+|+||||+.+....+
T Consensus       273 ~l~~~P~~Rpt~~e~l~hp~f~~~~~~~~  301 (338)
T cd07859         273 LLAFDPKDRPTAEEALADPYFKGLAKVER  301 (338)
T ss_pred             HcCcCcccCCCHHHHhcCchhhhcCcccc
Confidence            99999999999999999999998776443

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=1.1e-42  Score=374.52  Aligned_cols=254  Identities=25%  Similarity=0.374  Sum_probs=207.6

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH  281 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~  281 (728)
                      +.||+|+||.||+|++..+|+.||||++...     .....+.+|+.++.++.|++ |+++++++..++..|+||||+.+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~-i~~~~~~~~~~~~~~lv~e~~~~   79 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPF-LTALKYSFQTHDRLCFVMEYANG   79 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCC-CCCEEEEEEcCCEEEEEEeCCCC
Confidence            3699999999999999999999999998743     22345678999999999998 99999999999999999999999


Q ss_pred             CChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCCC
Q 004835          282 DRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT  358 (728)
Q Consensus       282 ~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~t  358 (728)
                      +.+..+..   .+++..++.++.||+.||+|||++||+||||||+||||+ .++.+||+|||+++......         
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~-~~~~~kl~DfG~a~~~~~~~---------  149 (323)
T cd05571          80 GELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLD-KDGHIKITDFGLCKEGISDG---------  149 (323)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEEC-CCCCEEEeeCCCCcccccCC---------
Confidence            98866543   388999999999999999999999999999999999999 66779999999986310000         


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCcccc
Q 004835          359 KYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAER  438 (728)
Q Consensus       359 ~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (728)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (323)
T cd05571         150 --------------------------------------------------------------------------------  149 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCchh
Q 004835          439 LREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSD  518 (728)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  518 (728)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (323)
T cd05571         150 --------------------------------------------------------------------------------  149 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCChH
Q 004835          519 LQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ  598 (728)
Q Consensus       519 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~~  598 (728)
                                                 ......+||+.|+|||++.+.. ++.++|||||||++|||++|..||.+.+..
T Consensus       150 ---------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlG~il~elltg~~Pf~~~~~~  201 (323)
T cd05571         150 ---------------------------ATMKTFCGTPEYLAPEVLEDND-YGRAVDWWGLGVVMYEMMCGRLPFYNQDHE  201 (323)
T ss_pred             ---------------------------CcccceecCccccChhhhcCCC-CCccccCcccchhhhhhhcCCCCCCCCCHH
Confidence                                       0001346899999999996554 699999999999999999999999887665


Q ss_pred             HHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC-
Q 004835          599 NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI-  677 (728)
Q Consensus       599 ~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp-  677 (728)
                      .+...+.                                          .....++..++.++.+||.+||..||++|| 
T Consensus       202 ~~~~~~~------------------------------------------~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~  239 (323)
T cd05571         202 KLFELIL------------------------------------------MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLG  239 (323)
T ss_pred             HHHHHHH------------------------------------------cCCCCCCCCCCHHHHHHHHHHccCCHHHcCC
Confidence            4433221                                          112234456789999999999999999999 


Q ss_pred             ----CHHHHhcCCCCccchhcchHhHhh
Q 004835          678 ----SAEDALKHEFFAPCHEMLRKQKLL  701 (728)
Q Consensus       678 ----ta~e~L~Hp~f~~~~~~~~~~~~~  701 (728)
                          ++.++++||||.++.+.....+.+
T Consensus       240 ~~~~~~~~ll~h~~f~~~~~~~~~~~~~  267 (323)
T cd05571         240 GGPEDAKEIMEHRFFASINWQDVVQKKL  267 (323)
T ss_pred             CCCCCHHHHHcCCCcCCCCHHHHHhCCC
Confidence                899999999999987655544333

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=3.3e-42  Score=374.67  Aligned_cols=262  Identities=23%  Similarity=0.276  Sum_probs=213.9

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCC-eEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeC
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDG-TVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g-~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      ....+++|.+.+.||+|+||.||+|.+..++ ..||+|++...     .....+.+|+.++..++|++ |+++++++..+
T Consensus        25 ~~~~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-Iv~~~~~~~~~  103 (340)
T PTZ00426         25 NKMKYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPF-CVNLYGSFKDE  103 (340)
T ss_pred             CCCChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCC-CcceEEEEEeC
Confidence            3346789999999999999999999976554 78999987632     23456778999999999999 99999999999


Q ss_pred             CeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccccc
Q 004835          270 DSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGF  346 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~  346 (728)
                      +..|+||||+.++.+..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++....
T Consensus       104 ~~~~lv~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~-~~~~ikL~DFG~a~~~~  182 (340)
T PTZ00426        104 SYLYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLD-KDGFIKMTDFGFAKVVD  182 (340)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEEC-CCCCEEEecCCCCeecC
Confidence            99999999999988876653   388999999999999999999999999999999999998 66789999999986410


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ..                                                                              
T Consensus       183 ~~------------------------------------------------------------------------------  184 (340)
T PTZ00426        183 TR------------------------------------------------------------------------------  184 (340)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (340)
T PTZ00426        185 --------------------------------------------------------------------------------  184 (340)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                               ....+||+.|+|||++.+.. ++.++|||||||++|||+
T Consensus       185 -----------------------------------------~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlGvil~ell  222 (340)
T PTZ00426        185 -----------------------------------------TYTLCGTPEYIAPEILLNVG-HGKAADWWTLGIFIYEIL  222 (340)
T ss_pred             -----------------------------------------cceecCChhhcCHHHHhCCC-CCccccccchhhHHHHHh
Confidence                                                     00235899999999996654 589999999999999999


Q ss_pred             cCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          587 IGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       587 tG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      +|.+||.+.+...+...+.                                          .....++..+++.+.+||.
T Consensus       223 ~G~~Pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~~~~~~~li~  260 (340)
T PTZ00426        223 VGCPPFYANEPLLIYQKIL------------------------------------------EGIIYFPKFLDNNCKHLMK  260 (340)
T ss_pred             cCCCCCCCCCHHHHHHHHh------------------------------------------cCCCCCCCCCCHHHHHHHH
Confidence            9999998876543332221                                          0112233456788999999


Q ss_pred             HhcccCCCCCC-----CHHHHhcCCCCccchhcchHhHhh
Q 004835          667 KCLTVNPRLRI-----SAEDALKHEFFAPCHEMLRKQKLL  701 (728)
Q Consensus       667 ~~L~~dP~~Rp-----ta~e~L~Hp~f~~~~~~~~~~~~~  701 (728)
                      +||..||++|+     +++++++||||.++.+.....+.+
T Consensus       261 ~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~~~~~~~~~~~  300 (340)
T PTZ00426        261 KLLSHDLTKRYGNLKKGAQNVKEHPWFGNIDWVSLLHKNV  300 (340)
T ss_pred             HHcccCHHHcCCCCCCCHHHHHcCCCcCCCCHHHHHhCCC
Confidence            99999999996     899999999999988765444444

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.3e-42  Score=385.18  Aligned_cols=139  Identities=24%  Similarity=0.331  Sum_probs=124.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      ..+|.+.+.||+|+||.||+|.+..+++.||||....    ..+.+|+.++++++|+| |++++++|..+...|+|+|++
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~----~~~~~E~~il~~l~Hpn-Iv~~~~~~~~~~~~~lv~e~~  165 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR----GGTATEAHILRAINHPS-IIQLKGTFTYNKFTCLILPRY  165 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh----hhhHHHHHHHHhCCCCC-CCCEeEEEEECCeeEEEEecC
Confidence            4579999999999999999999999999999997542    34678999999999999 999999999999999999999


Q ss_pred             CCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          280 KHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       280 ~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .+++...+..  .+++..++.++.||+.||.|||++|||||||||+|||++ ..+.++|+|||+|..
T Consensus       166 ~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~-~~~~vkL~DFG~a~~  231 (391)
T PHA03212        166 KTDLYCYLAAKRNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFIN-HPGDVCLGDFGAACF  231 (391)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEc-CCCCEEEEeCCcccc
Confidence            8766655543  488999999999999999999999999999999999998 667799999999864

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=5.1e-42  Score=365.99  Aligned_cols=282  Identities=24%  Similarity=0.389  Sum_probs=218.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +++|.+.+.||+|+||.||+|++..+++.||+|.+....   ....+.+|+.++.+++|+| |+++++++..++..|+||
T Consensus         5 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~   83 (309)
T cd07872           5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHAN-IVTLHDIVHTDKSLTLVF   83 (309)
T ss_pred             CCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCC-cceEEEEEeeCCeEEEEE
Confidence            568999999999999999999999999999999886432   2345678999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      ||+.+++...+..   .+++..++.++.||+.||.|||++||+||||||+|||++ ..+.++|+|||++.......    
T Consensus        84 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~-~~~~~kl~Dfg~~~~~~~~~----  158 (309)
T cd07872          84 EYLDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLIN-ERGELKLADFGLARAKSVPT----  158 (309)
T ss_pred             eCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEC-CCCCEEECccccceecCCCc----
Confidence            9999866655543   278889999999999999999999999999999999999 66789999999986310000    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (309)
T cd07872         159 --------------------------------------------------------------------------------  158 (309)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (309)
T cd07872         159 --------------------------------------------------------------------------------  158 (309)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                      ......+||+.|+|||++.+...++.++|||||||++|+|++|++||.
T Consensus       159 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~  206 (309)
T cd07872         159 --------------------------------KTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFP  206 (309)
T ss_pred             --------------------------------cccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                                            000123478899999999776667999999999999999999999998


Q ss_pred             CCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          594 GDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       594 ~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      +.+. +.+..++..+|.+....+..+.... .|..     ...+......+.       .....++.++.|||.+||.+|
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~L~~d  273 (309)
T cd07872         207 GSTVEDELHLIFRLLGTPTEETWPGISSND-EFKN-----YNFPKYKPQPLI-------NHAPRLDTEGIELLTKFLQYE  273 (309)
T ss_pred             CCChHHHHHHHHHHhCCCCHHHHhhhcchh-hhhh-----hhcCccCCCchh-------hhccCCCHHHHHHHHHhccCC
Confidence            8765 5667777777764432222211110 0000     000111111111       112357889999999999999


Q ss_pred             CCCCCCHHHHhcCCCCccch
Q 004835          673 PRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~~~~  692 (728)
                      |.+|||+.|+|+||||+.++
T Consensus       274 p~~R~t~~e~l~h~~~~~~~  293 (309)
T cd07872         274 SKKRISAEEAMKHAYFRSLG  293 (309)
T ss_pred             hhhCCCHHHHhcChhhhhcc
Confidence            99999999999999999765

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-42  Score=372.38  Aligned_cols=445  Identities=20%  Similarity=0.240  Sum_probs=270.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCC-------CCceEEecceEEe----
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGG-------KNFIIKYEGCFKC----  268 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h-------~n~Ivkl~~~~~~----  268 (728)
                      .+|.+.++||.|.|++||+|.+..+.+.||+|+.+... -.+....||.+|+++..       .++||+|++.|..    
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpN  157 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPN  157 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCC
Confidence            68999999999999999999999999999999987643 34557789999999862       2469999999974    


Q ss_pred             CCeeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          269 GDSDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       269 ~~~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      +.++|+|+|+++..+|..+..    .++...++.|++||+.||.|||+. ||||-||||+|||+-.....+ ..|-.-|.
T Consensus       158 G~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPENvLl~~~e~~~-~~~~~~a~  236 (590)
T KOG1290|consen  158 GQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPENVLLCSTEIDP-AKDAREAG  236 (590)
T ss_pred             CcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcceeeeeccccch-hhhhhhhc
Confidence            568999999999999988864    399999999999999999999975 999999999999997332111 01111111


Q ss_pred             cccCCCCccccCCCCcCCCCCCCCCCCCccccccccc-ccccCCCCCccccchhhhhccc--cccCCCcccccccCCCCC
Q 004835          344 VGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQ-DTRKGSNLEPKDLKRKVVRQTN--VHNDLGSRNIINSQGADG  420 (728)
Q Consensus       344 ~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~dfg~~~~~~~~~~~~  420 (728)
                      .     .       +.-.|+....... +.. ++... ....-+.-.-+.++++..++..  ....+|...         
T Consensus       237 e-----~-------~~~~p~~s~s~~~-t~~-d~~~~~~~~~~s~~~~k~~~kk~~r~~~~~~~~l~~~~~---------  293 (590)
T KOG1290|consen  237 E-----A-------TTSLPKMSPSAVS-TRP-DALQRMAAEPMSKSKFKKMKKKLKRQAKKLEASLAGLEG---------  293 (590)
T ss_pred             c-----c-------cccCCCCCccccc-ccc-cccchhhccccchhhHHHHHHHHhhhhhhhhhhhccccc---------
Confidence            0     0       0000000000000 000 00000 0000001111222222222211  111111111         


Q ss_pred             CCccccccccccCCcccccCCCCCccchhHHHHHHHhhhc--CCCCC-CCCCCCC-ccccccCCCCCC-----Ccccccc
Q 004835          421 SGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALR--NPNYE-ASDCPAP-RRKRVVAPPGKV-----GKELVYI  491 (728)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~-~r~~~~~~~~~~-----~~~~~~~  491 (728)
                        +.... ...+.....+    .+.....-..+.+.+...  +...+ ..+.|-- ....-..+.++.     ....+..
T Consensus       294 --~~~~~-~~~s~n~~~~----~n~~~~~v~~~~~~~~~~~~~~~~n~~~k~~e~~~~~~~sl~~~~~~~~~t~~~~~~~  366 (590)
T KOG1290|consen  294 --IEEEP-NQESYNNEPR----INGNESTVERSTLEEDSNENGNRENLPIKSPENFRGNNTSLPESQLRDSATPSDGSLS  366 (590)
T ss_pred             --ccccc-cccccccccC----CCccccchhhcccccccccccCCccccccCccccccccccccchhccccccccccccc
Confidence              11100 0000000000    000000000000000000  00000 0000000 000000000000     0011122


Q ss_pred             CCCCCCCCCcccccCCCCCCCCCCchhHHH-HHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCC
Q 004835          492 TPMPLHSNGIAVAGAGLMNKGPSDLSDLQI-LLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQG  570 (728)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~  570 (728)
                      ||+.  +..++              ....+ ...+.....+...+.+++.+++..+..+..+.|..|||||||++.+ |+
T Consensus       367 s~~s--~~~~~--------------~n~~v~p~~~~~~~di~vKIaDlGNACW~~khFT~DIQTRQYRapEVllGsg-Y~  429 (590)
T KOG1290|consen  367 SPSS--PGTIA--------------SNPLVNPDIPLPECDIRVKIADLGNACWVHKHFTEDIQTRQYRAPEVLLGSG-YS  429 (590)
T ss_pred             CcCC--ccccc--------------cccccCCCCCCCccceeEEEeeccchhhhhhhhchhhhhhhccCcceeecCC-CC
Confidence            2221  00000              00000 1123344555666777888899999999999999999999999998 59


Q ss_pred             CchhHHHHHHHHHHHhcCCCCCC-------CCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhh
Q 004835          571 PKLDIWSAGVTLLYLMIGRTPFF-------GDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEW  643 (728)
Q Consensus       571 ~~~DIWSlG~il~eLltG~~PF~-------~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  643 (728)
                      +.+||||++|++|||+||.++|.       +.++++|+.|++++|.-+.. ++.-..+...|.......+.+..+..+.+
T Consensus       430 ~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~rDEDHiA~i~ELLG~iPr~-ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL  508 (590)
T KOG1290|consen  430 TSADIWSTACMAFELATGDYLFEPHSGENYSRDEDHIALIMELLGKIPRK-IALGGKYSRDFFNRRGELRHIRRLKPWPL  508 (590)
T ss_pred             CchhHHHHHHHHHHhhcCceeecCCCCCCCCccHHHHHHHHHHHhhccHH-HHhcCcchHhhhccccceecccccCCCcH
Confidence            99999999999999999999994       35678999999999974332 22222233346666667778888888888


Q ss_pred             hhhhccCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          644 CKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       644 ~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      .+++...++|+.+...++.|||.-||+++|++||||.++|+|||+.++..+
T Consensus       509 ~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR~tA~~cl~hPwLn~~~~~  559 (590)
T KOG1290|consen  509 YEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKRPTAAQCLKHPWLNPVAGP  559 (590)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHhcCccccccHHHHhcCccccCCCCC
Confidence            999999999999999999999999999999999999999999999987654

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=8e-42  Score=367.80  Aligned_cols=256  Identities=24%  Similarity=0.354  Sum_probs=210.2

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +|++.+.||+|+||.||+|++..+++.||||++...     .....+..|+.++..+.|+++|+.+++++...+..|+||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            589999999999999999999999999999998743     234457789999999999888999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      ||+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++.......    
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~-~~~~~kL~Dfg~~~~~~~~~----  155 (324)
T cd05587          81 EYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLD-AEGHIKIADFGMCKENIFGG----  155 (324)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEc-CCCCEEEeecCcceecCCCC----
Confidence            9999988876553   378999999999999999999999999999999999999 66789999999986310000    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (324)
T cd05587         156 --------------------------------------------------------------------------------  155 (324)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (324)
T cd05587         156 --------------------------------------------------------------------------------  155 (324)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                      ......+||+.|+|||++.+.. ++.++||||+||++|+|++|+.||.
T Consensus       156 --------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslGvil~elltG~~pf~  202 (324)
T cd05587         156 --------------------------------KTTRTFCGTPDYIAPEIIAYQP-YGKSVDWWAFGVLLYEMLAGQPPFD  202 (324)
T ss_pred             --------------------------------CceeeecCCccccChhhhcCCC-CCcccchhhhHHHHHHHHhCCCCCC
Confidence                                            0001235899999999996654 6999999999999999999999998


Q ss_pred             CCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCC
Q 004835          594 GDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNP  673 (728)
Q Consensus       594 ~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP  673 (728)
                      +.+...+...+.                                          .....++..++..+.+||.+||..||
T Consensus       203 ~~~~~~~~~~i~------------------------------------------~~~~~~~~~~~~~~~~li~~~l~~~P  240 (324)
T cd05587         203 GEDEDELFQSIM------------------------------------------EHNVSYPKSLSKEAVSICKGLLTKHP  240 (324)
T ss_pred             CCCHHHHHHHHH------------------------------------------cCCCCCCCCCCHHHHHHHHHHhhcCH
Confidence            876654433221                                          11223345678899999999999999


Q ss_pred             CCCCCH-----HHHhcCCCCccchhcchH
Q 004835          674 RLRISA-----EDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       674 ~~Rpta-----~e~L~Hp~f~~~~~~~~~  697 (728)
                      .+|+++     +++++||||+.+.+....
T Consensus       241 ~~R~~~~~~~~~~~~~hp~~~~~~~~~~~  269 (324)
T cd05587         241 AKRLGCGPTGERDIREHAFFRRIDWEKLE  269 (324)
T ss_pred             HHcCCCCCCCHHHHhcCCCcCCCCHHHHH
Confidence            999986     899999999998765443

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.6e-44  Score=367.16  Aligned_cols=145  Identities=25%  Similarity=0.359  Sum_probs=128.2

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecc-eEEeCC-e
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEG-CFKCGD-S  271 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~-~~~~~~-~  271 (728)
                      +.+.+|+|.++||+|.||+||++....+|..||.|.++-.    ...+.+..|+.+|++|+||| |+++++ .|.... .
T Consensus        16 ~~l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpN-IVqYy~~~f~~~~ev   94 (375)
T KOG0591|consen   16 KTLADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPN-IVQYYAHSFIEDNEV   94 (375)
T ss_pred             ccHHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCch-HHHHHHHhhhccchh
Confidence            3456899999999999999999999999999999988732    34566889999999999999 999988 555444 4


Q ss_pred             eEEEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHh--CC--cEeccCCCCceEeecCCCceEEEeee
Q 004835          272 DCFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHK--QG--IVHRDVKPGNFLFSCKAVKGYLIDFN  340 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs--~g--IIHRDIKPeNILld~~~~~~kL~DFG  340 (728)
                      ++||||||.+|.+..+++       .+++..++.++.|++.||.++|+  ..  |+||||||.||+|+ .++.+||.|||
T Consensus        95 lnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~-~~gvvKLGDfG  173 (375)
T KOG0591|consen   95 LNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLT-ANGVVKLGDFG  173 (375)
T ss_pred             hHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEc-CCCceeeccch
Confidence            899999999999988764       28999999999999999999999  44  99999999999999 77789999999


Q ss_pred             cccc
Q 004835          341 LAMV  344 (728)
Q Consensus       341 lA~~  344 (728)
                      ++++
T Consensus       174 L~r~  177 (375)
T KOG0591|consen  174 LGRF  177 (375)
T ss_pred             hHhH
Confidence            9986

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=6.7e-42  Score=387.47  Aligned_cols=297  Identities=17%  Similarity=0.221  Sum_probs=210.0

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCC-----ceEEecceEEeC-Ce
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKN-----FIIKYEGCFKCG-DS  271 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n-----~Ivkl~~~~~~~-~~  271 (728)
                      ..++|++.++||+|+||+||+|.+..+++.||||+++.. .....+..|+.+++.+.|.+     .+++++++|... .+
T Consensus       127 ~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~  206 (467)
T PTZ00284        127 STQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGH  206 (467)
T ss_pred             CCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCce
Confidence            347899999999999999999999989999999998643 22344567888888876654     278888888754 57


Q ss_pred             eEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCC---------------c
Q 004835          272 DCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAV---------------K  333 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~---------------~  333 (728)
                      .|+|||++.+.++..+.+  .+++..++.|+.||+.||.|||+ .|||||||||+||||+.++.               .
T Consensus       207 ~~iv~~~~g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~  286 (467)
T PTZ00284        207 MCIVMPKYGPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCR  286 (467)
T ss_pred             EEEEEeccCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCCCCce
Confidence            899999998777766654  48899999999999999999998 59999999999999984432               3


Q ss_pred             eEEEeeeccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCccccc
Q 004835          334 GYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNII  413 (728)
Q Consensus       334 ~kL~DFGlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~  413 (728)
                      +||+|||++...                                                                    
T Consensus       287 vkl~DfG~~~~~--------------------------------------------------------------------  298 (467)
T PTZ00284        287 VRICDLGGCCDE--------------------------------------------------------------------  298 (467)
T ss_pred             EEECCCCccccC--------------------------------------------------------------------
Confidence            566666654310                                                                    


Q ss_pred             ccCCCCCCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCC
Q 004835          414 NSQGADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITP  493 (728)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  493 (728)
                                                                                                      
T Consensus       299 --------------------------------------------------------------------------------  298 (467)
T PTZ00284        299 --------------------------------------------------------------------------------  298 (467)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCch
Q 004835          494 MPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKL  573 (728)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~  573 (728)
                                                                         ....+..+||+.|+|||++.+.. |+.++
T Consensus       299 ---------------------------------------------------~~~~~~~~gt~~Y~APE~~~~~~-~~~~~  326 (467)
T PTZ00284        299 ---------------------------------------------------RHSRTAIVSTRHYRSPEVVLGLG-WMYST  326 (467)
T ss_pred             ---------------------------------------------------ccccccccCCccccCcHHhhcCC-CCcHH
Confidence                                                               00012356899999999997665 69999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCCh-HHHHHHHHHhCC-chHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCC
Q 004835          574 DIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGS-EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRP  651 (728)
Q Consensus       574 DIWSlG~il~eLltG~~PF~~~~~-~~l~~i~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  651 (728)
                      |||||||++|||++|++||.+.+. +.+..+.+.+|. +..|...........+.....  ...+......+..+.....
T Consensus       327 DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  404 (467)
T PTZ00284        327 DMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAG--QLRPCTDPKHLARIARARP  404 (467)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcc--cccccCCHHHHHhhhcccc
Confidence            999999999999999999988665 566777788886 333321100000000000000  0001111112222111111


Q ss_pred             cccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhcchH
Q 004835          652 DFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       652 ~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~  697 (728)
                      .......+.+.|||.+||++||++||||+|+|+||||......++.
T Consensus       405 ~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~Hp~~~~~~~~~~~  450 (467)
T PTZ00284        405 VREVIRDDLLCDLIYGLLHYDRQKRLNARQMTTHPYVLKYYPECRQ  450 (467)
T ss_pred             hhhhhchHHHHHHHHHhCCcChhhCCCHHHHhcCccccccCCcccc
Confidence            1111124678899999999999999999999999999986655544

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=1e-41  Score=364.20  Aligned_cols=282  Identities=22%  Similarity=0.345  Sum_probs=205.0

Q ss_pred             EEEecccCceEEEEEEEc--CCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEe--CCeeEEEEeccCC
Q 004835          206 EEEEGSGGYGTVYRARRK--NDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKC--GDSDCFVLEHVKH  281 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~--~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--~~~~~LV~E~~~~  281 (728)
                      ..+||+|+||+||+|++.  .+++.||+|.+........+.+|+.++++++|+| |+++++++..  +...|+||||+.+
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPN-VISLQKVFLSHADRKVWLLFDYAEH   84 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCCC-CcceeeeEecCCCcEEEEEEeccCC
Confidence            458999999999999975  3678999999876655666789999999999999 9999988854  4578999999988


Q ss_pred             CChHHHhh-----------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee---cCCCceEEEeeeccccccC
Q 004835          282 DRPEVLKK-----------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS---CKAVKGYLIDFNLAMVGFD  347 (728)
Q Consensus       282 ~~l~~l~~-----------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld---~~~~~~kL~DFGlA~~~~~  347 (728)
                      ++...+..           .+++..++.++.||+.||.|||++||+||||||+|||++   ...+.+||+|||++.....
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~  164 (317)
T cd07868          85 DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS  164 (317)
T ss_pred             CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCC
Confidence            66554321           378889999999999999999999999999999999994   2446799999999974210


Q ss_pred             CCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccc
Q 004835          348 GSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAK  427 (728)
Q Consensus       348 ~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~  427 (728)
                      ...                                                                             
T Consensus       165 ~~~-----------------------------------------------------------------------------  167 (317)
T cd07868         165 PLK-----------------------------------------------------------------------------  167 (317)
T ss_pred             CCc-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             cccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCC
Q 004835          428 EATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAG  507 (728)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (728)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (317)
T cd07868         168 --------------------------------------------------------------------------------  167 (317)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhc
Q 004835          508 LMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI  587 (728)
Q Consensus       508 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLlt  587 (728)
                                                          ........+||+.|+|||++.+...++.++||||+||++|+|++
T Consensus       168 ------------------------------------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~  211 (317)
T cd07868         168 ------------------------------------PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLT  211 (317)
T ss_pred             ------------------------------------cccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHh
Confidence                                                00001234689999999999877778999999999999999999


Q ss_pred             CCCCCCCCC----------hHHHHHHHHHhCCchHHHHHHhcc--CCCCCcchhhcccCCCCCCchhhhhhhccCCcccc
Q 004835          588 GRTPFFGDP----------EQNIKDIAKLRGSEDLWEVAKLHN--RESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLE  655 (728)
Q Consensus       588 G~~PF~~~~----------~~~l~~i~~~~G~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (728)
                      |++||.+..          ..++..++..+|.+....+.....  ........ .............+.+      ....
T Consensus       212 g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~  284 (317)
T cd07868         212 SEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKD-FRRNTYTNCSLIKYME------KHKV  284 (317)
T ss_pred             CCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhhhhhh-hhccccCcccccchHH------hcCC
Confidence            999997533          255777888888654333222111  00000000 0000000001111111      0112


Q ss_pred             cCchhHHHHHHHhcccCCCCCCCHHHHhcCCCC
Q 004835          656 VIPSSLFDLVDKCLTVNPRLRISAEDALKHEFF  688 (728)
Q Consensus       656 ~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f  688 (728)
                      ..+..+.|||.+||++||.+||||+|+|+||||
T Consensus       285 ~~~~~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         285 KPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             CCChHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            235678999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=8.8e-42  Score=373.29  Aligned_cols=290  Identities=24%  Similarity=0.321  Sum_probs=217.5

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeC-----
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCG-----  269 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~-----  269 (728)
                      .+++|.+.+.||+|+||.||+|.+..+++.||||++...    .....+.+|+.+++.++|+| |+++++++...     
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-ii~~~~~~~~~~~~~~  100 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN-IIGLLNVFTPQKSLEE  100 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCC-ccccceeecccccccc
Confidence            467999999999999999999999999999999998643    22345778999999999999 98888877543     


Q ss_pred             -CeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          270 -DSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       270 -~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                       ...|+||||+++++...+...+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||+++.....
T Consensus       101 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~-~~~~~kL~DfG~a~~~~~~  179 (364)
T cd07875         101 FQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK-SDCTLKILDFGLARTAGTS  179 (364)
T ss_pred             cCeEEEEEeCCCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEEC-CCCcEEEEeCCCccccCCC
Confidence             35799999999987777766789999999999999999999999999999999999999 6678999999998641000


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       180 --------------------------------------------------------------------------------  179 (364)
T cd07875         180 --------------------------------------------------------------------------------  179 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       180 --------------------------------------------------------------------------------  179 (364)
T cd07875         180 --------------------------------------------------------------------------------  179 (364)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                           ......+||+.|+|||++.+.. ++.++|||||||++|+|++|
T Consensus       180 -------------------------------------~~~~~~~~t~~y~aPE~~~~~~-~~~~~DiwSlG~il~ell~g  221 (364)
T cd07875         180 -------------------------------------FMMTPYVVTRYYRAPEVILGMG-YKENVDIWSVGCIMGEMIKG  221 (364)
T ss_pred             -------------------------------------CcccCCcccCCcCCHHHHhCCC-CCchhhHHhHHHHHHHHHhC
Confidence                                                 0001345899999999996654 69999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhh-----ccCCcccccCchhHH
Q 004835          589 RTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLI-----TKRPDFLEVIPSSLF  662 (728)
Q Consensus       589 ~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~  662 (728)
                      +.||.+.+. +.+..++...|.+.......+......+...      .+......+.+..     ..........+..+.
T Consensus       222 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (364)
T cd07875         222 GVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVEN------RPKYAGYSFEKLFPDVLFPADSEHNKLKASQAR  295 (364)
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhh------CCCcCCCChHhhCccccccccccccccccHHHH
Confidence            999988765 5677777777764332211111100000000      0000000011000     001122234567899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          663 DLVDKCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       663 dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      |||.+||..||.+|||+.|+|+||||....+.
T Consensus       296 dll~~mL~~dP~~R~t~~e~L~hp~~~~~~~~  327 (364)
T cd07875         296 DLLSKMLVIDASKRISVDEALQHPYINVWYDP  327 (364)
T ss_pred             HHHHHhcCcCcccCCCHHHHhcCcccccccCc
Confidence            99999999999999999999999999865443

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=9.9e-42  Score=375.07  Aligned_cols=258  Identities=31%  Similarity=0.437  Sum_probs=215.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcC-CCCceEEecceEEeCCeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFG-GKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~~~~~  273 (728)
                      -..|++.+.||+|.||.||+++.+.+|+.+|+|++.+..     ....+.+|+.||+++. |+| |+.+++.|++....+
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpn-iv~l~~~~e~~~~~~  112 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPN-IVQLKDAFEDPDSVY  112 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCC-EEEEEEEEEcCCeEE
Confidence            457999999999999999999999999999999987543     2357899999999999 888 999999999999999


Q ss_pred             EEEeccCCCChHHHh-hc-CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC---CceEEEeeeccccccCC
Q 004835          274 FVLEHVKHDRPEVLK-KE-IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA---VKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       274 LV~E~~~~~~l~~l~-~~-l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~---~~~kL~DFGlA~~~~~~  348 (728)
                      +|||++.||.+...+ +. +++..+..++.||+.|+.|||+.||+||||||+|+|+....   ..+|++|||+|..... 
T Consensus       113 lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~-  191 (382)
T KOG0032|consen  113 LVMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP-  191 (382)
T ss_pred             EEEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccC-
Confidence            999999988776544 44 99999999999999999999999999999999999997442   3799999999986221 


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (382)
T KOG0032|consen  192 --------------------------------------------------------------------------------  191 (382)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (382)
T KOG0032|consen  192 --------------------------------------------------------------------------------  191 (382)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                          .......+||+.|+|||++.+ ..|+..+||||+||++|.|++|
T Consensus       192 ------------------------------------~~~~~~~~Gtp~y~APEvl~~-~~y~~~~DiWS~Gvi~yiLL~G  234 (382)
T KOG0032|consen  192 ------------------------------------GERLHTIVGTPEYVAPEVLGG-RPYGDEVDVWSIGVILYILLSG  234 (382)
T ss_pred             ------------------------------------CceEeeecCCccccCchhhcC-CCCCcccchhHHHHHHHHHhhC
Confidence                                                011225679999999999944 4479999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          589 RTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       589 ~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      .+||.+.+.......+. .|             ...|                        ..+.++.++..+.|||++|
T Consensus       235 ~~PF~~~~~~~~~~~i~-~~-------------~~~f------------------------~~~~w~~is~~akd~i~~l  276 (382)
T KOG0032|consen  235 VPPFWGETEFEIFLAIL-RG-------------DFDF------------------------TSEPWDDISESAKDFIRKL  276 (382)
T ss_pred             CCCCcCCChhHHHHHHH-cC-------------CCCC------------------------CCCCccccCHHHHHHHHHh
Confidence            99999988755444221 11             1111                        1233467899999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCccchhc
Q 004835          669 LTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      |..||.+|+||.++|+|||+++....
T Consensus       277 l~~dp~~R~ta~~~L~HpWi~~~~~~  302 (382)
T KOG0032|consen  277 LEFDPRKRLTAAQALQHPWIKSIGEA  302 (382)
T ss_pred             cccCcccCCCHHHHhcCccccCCccc
Confidence            99999999999999999999976433

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=1.2e-41  Score=371.64  Aligned_cols=286  Identities=24%  Similarity=0.376  Sum_probs=216.7

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCC----
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD----  270 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~----  270 (728)
                      .+++|++.+.||+|+||.||+|++..+|+.||||++...    .....+.+|+.+++.++|+| |+++++++....    
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~~   97 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKN-IISLLNVFTPQKSLEE   97 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCC-EeeeeeeeccCCCccc
Confidence            357999999999999999999999999999999998643    22445778999999999999 999999886543    


Q ss_pred             --eeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          271 --SDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       271 --~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                        ..|+||||+.+++...+...+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++......
T Consensus        98 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~-~~~~~kl~Dfg~a~~~~~~  176 (359)
T cd07876          98 FQDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK-SDCTLKILDFGLARTACTN  176 (359)
T ss_pred             cceeEEEEeCCCcCHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEC-CCCCEEEecCCCccccccC
Confidence              4799999999987777666789999999999999999999999999999999999999 6678999999998631000


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (359)
T cd07876         177 --------------------------------------------------------------------------------  176 (359)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (359)
T cd07876         177 --------------------------------------------------------------------------------  176 (359)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                           .......||+.|+|||++.+.. ++.++|||||||++|+|++|
T Consensus       177 -------------------------------------~~~~~~~~t~~y~aPE~~~~~~-~~~~~DiwSlG~il~el~tg  218 (359)
T cd07876         177 -------------------------------------FMMTPYVVTRYYRAPEVILGMG-YKENVDIWSVGCIMGELVKG  218 (359)
T ss_pred             -------------------------------------ccCCCCcccCCCCCchhccCCC-CCcchhhHHHHHHHHHHHhC
Confidence                                                 0001345899999999996655 68999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHHHhCCchHHHHHH-------hccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchh
Q 004835          589 RTPFFGDPE-QNIKDIAKLRGSEDLWEVAK-------LHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS  660 (728)
Q Consensus       589 ~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (728)
                      +.||.+.+. ..+..+++.+|.+.......       .......++..... .     ....|.  ...........+..
T Consensus       219 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~--~~~~~~~~~~~~~~  290 (359)
T cd07876         219 SVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFE-E-----LFPDWI--FPSESERDKLKTSQ  290 (359)
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchh-h-----hccccc--cccccccccccchh
Confidence            999988665 56677777777644321111       11111111100000 0     000110  00111223345788


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCCccch
Q 004835          661 LFDLVDKCLTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       661 l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      +.+||.+||.+||++|||+.|+|+||||....
T Consensus       291 ~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~~  322 (359)
T cd07876         291 ARDLLSKMLVIDPDKRISVDEALRHPYITVWY  322 (359)
T ss_pred             HHHHHHHHhccCcccCCCHHHHhcCchhhhhc
Confidence            99999999999999999999999999998543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=1.7e-41  Score=372.36  Aligned_cols=283  Identities=27%  Similarity=0.357  Sum_probs=217.9

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCC-----ee
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD-----SD  272 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~-----~~  272 (728)
                      +|++.+.||+|+||.||+|.+..+|+.||||++...    .....+.+|+.++..++|+| |+++++++...+     ..
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~~~~~   79 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDN-VLSALDILQPPHIDPFEEI   79 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCC-cCCHhheecCCCccccceE
Confidence            478899999999999999999989999999988643    12346789999999999999 999999998776     78


Q ss_pred             EEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          273 CFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      |+||||+.+++...+..  .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++....... 
T Consensus        80 ~lv~e~~~~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~-~~~~~kL~Dfg~a~~~~~~~-  157 (372)
T cd07853          80 YVVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVN-SNCVLKICDFGLARVEEPDE-  157 (372)
T ss_pred             EEEeeccccCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEEC-CCCCEEeccccceeecccCc-
Confidence            99999999776655543  388999999999999999999999999999999999999 66789999999987411000 


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (372)
T cd07853         158 --------------------------------------------------------------------------------  157 (372)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (372)
T cd07853         158 --------------------------------------------------------------------------------  157 (372)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                        .......+||+.|+|||++.+...++.++|||||||++|||++|+.
T Consensus       158 ----------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~  203 (372)
T cd07853         158 ----------------------------------SKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRI  203 (372)
T ss_pred             ----------------------------------cccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCC
Confidence                                              0001133578999999999877767999999999999999999999


Q ss_pred             CCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          591 PFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      ||.+.+. +++..+...+|.+....+......   ....+......++    .+..    ...+....++++.+||.+||
T Consensus       204 pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~li~~mL  272 (372)
T cd07853         204 LFQAQSPIQQLDLITDLLGTPSLEAMRSACEG---ARAHILRGPHKPP----SLPV----LYTLSSQATHEAVHLLCRML  272 (372)
T ss_pred             CCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHH---HHHHHHhCCCCCC----chHH----hcccCCCCCHHHHHHHHHhC
Confidence            9988765 567788888887554332211100   0000000000000    0000    11233456889999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccch
Q 004835          670 TVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      .+||++|||+.|+|+||||....
T Consensus       273 ~~dP~~R~t~~e~l~hp~~~~~~  295 (372)
T cd07853         273 VFDPDKRISAADALAHPYLDEGR  295 (372)
T ss_pred             CCChhhCcCHHHHhcCHhhCCCc
Confidence            99999999999999999999864

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=1.3e-41  Score=370.50  Aligned_cols=292  Identities=24%  Similarity=0.326  Sum_probs=216.7

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeC-----
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCG-----  269 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~-----  269 (728)
                      .+++|++.+.||+|+||.||+|.+..+++.||||++....    ....+.+|+.+++.++|+| |+++++++...     
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~~   93 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN-IISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCc-hhceeeeeeccccccc
Confidence            4579999999999999999999999899999999986432    2345778999999999999 99999888643     


Q ss_pred             -CeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          270 -DSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       270 -~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                       ...|+||||+.+++...+...+++..+..++.||+.||.|||++||+||||||+||||+ .++.+||+|||+++.....
T Consensus        94 ~~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~-~~~~~kl~Dfg~~~~~~~~  172 (355)
T cd07874          94 FQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK-SDCTLKILDFGLARTAGTS  172 (355)
T ss_pred             cceeEEEhhhhcccHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEC-CCCCEEEeeCcccccCCCc
Confidence             35799999999987777777799999999999999999999999999999999999998 6678999999998641100


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (355)
T cd07874         173 --------------------------------------------------------------------------------  172 (355)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (355)
T cd07874         173 --------------------------------------------------------------------------------  172 (355)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                           ......+||+.|+|||++.+.. ++.++|||||||++|+|++|
T Consensus       173 -------------------------------------~~~~~~~~t~~y~aPE~~~~~~-~~~~~DiwslG~il~el~~g  214 (355)
T cd07874         173 -------------------------------------FMMTPYVVTRYYRAPEVILGMG-YKENVDIWSVGCIMGEMVRH  214 (355)
T ss_pred             -------------------------------------cccCCccccCCccCHHHHcCCC-CCchhhHHHHHHHHHHHHhC
Confidence                                                 0001345899999999996554 69999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhh--hhhhccCCcccccCchhHHHHH
Q 004835          589 RTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEW--CKLITKRPDFLEVIPSSLFDLV  665 (728)
Q Consensus       589 ~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~dLi  665 (728)
                      +.||.+... +.+..+++.+|.+......++......|....   ...........  ..............+..+.+||
T Consensus       215 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  291 (355)
T cd07874         215 KILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENR---PKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLL  291 (355)
T ss_pred             CCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcC---CccccccchhhccccccccccccccccchHHHHHH
Confidence            999988765 55667777777542221111111000000000   00000000000  0000111223344567899999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCccchh
Q 004835          666 DKCLTVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       666 ~~~L~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      .+||..||++|||+.|+|+||||....+
T Consensus       292 ~~mL~~dP~~Rps~~ell~hp~~~~~~~  319 (355)
T cd07874         292 SKMLVIDPAKRISVDEALQHPYINVWYD  319 (355)
T ss_pred             HHHhcCCchhcCCHHHHhcCcchhcccC
Confidence            9999999999999999999999986544

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=100.00  E-value=1.6e-42  Score=369.75  Aligned_cols=357  Identities=36%  Similarity=0.559  Sum_probs=264.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcC---CCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKN---DGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~---~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +.|.++++||+|+|++||++.+..   .++.||+|.+.......++.+|+++|..+...++|+++.+++..++..++|+|
T Consensus        36 ~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivlp  115 (418)
T KOG1167|consen   36 NAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVLP  115 (418)
T ss_pred             hhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhccCCeeEEEec
Confidence            368999999999999999999877   78999999999888888999999999999988889999999999999999999


Q ss_pred             ccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCC
Q 004835          278 HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG  357 (728)
Q Consensus       278 ~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~  357 (728)
                      |+++.....+...++..+++++++.++.||+++|.+|||||||||+|+|.+...+...|+|||+|.......-.  . ..
T Consensus       116 ~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~--~-~s  192 (418)
T KOG1167|consen  116 YFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQT--E-HS  192 (418)
T ss_pred             ccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHHHHhhhhh--h-hh
Confidence            99999999999999999999999999999999999999999999999999988888999999999731111000  0 00


Q ss_pred             CcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccc
Q 004835          358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAE  437 (728)
Q Consensus       358 t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (728)
                      ..|..|..                              +++        -|.-.            ..-+-.        
T Consensus       193 ~~~~~~~~------------------------------~~~--------~g~~~------------~~~~~~--------  214 (418)
T KOG1167|consen  193 RSYSGRHA------------------------------TPA--------MGKDV------------HCQSVA--------  214 (418)
T ss_pred             hhhhcccC------------------------------Ccc--------ccCcc------------cccccc--------
Confidence            00000000                              000        00000            000000        


Q ss_pred             ccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCch
Q 004835          438 RLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLS  517 (728)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  517 (728)
                                                  +          .+.|.|.                  ..              
T Consensus       215 ----------------------------~----------~~~p~g~------------------~~--------------  224 (418)
T KOG1167|consen  215 ----------------------------T----------ASKPAGY------------------YR--------------  224 (418)
T ss_pred             ----------------------------c----------ccCCCCc------------------ee--------------
Confidence                                        0          0001000                  00              


Q ss_pred             hHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          518 DLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       518 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                           .............+||++|||||++++.+.+++++||||.|||++.++++++||+...+
T Consensus       225 ---------------------~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~d  283 (418)
T KOG1167|consen  225 ---------------------RCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAKD  283 (418)
T ss_pred             ---------------------ccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCcc
Confidence                                 00123334445778999999999999999999999999999999999999999987554


Q ss_pred             --HHHHHHHHHhCCchHHHHHHhccCC-----CCCcchhhcccCCCCCCchhhh---hhhccCCcccccCchhHHHHHHH
Q 004835          598 --QNIKDIAKLRGSEDLWEVAKLHNRE-----SSFPEDLYAAKSLPPINLPEWC---KLITKRPDFLEVIPSSLFDLVDK  667 (728)
Q Consensus       598 --~~l~~i~~~~G~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~dLi~~  667 (728)
                        +.+.+|+.++|..+....+.++++.     .+++...-....+.........   +.+..+..+.+..+..+.||+++
T Consensus       284 d~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk  363 (418)
T KOG1167|consen  284 DADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDK  363 (418)
T ss_pred             ccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHH
Confidence              6799999999999888888888871     1111111000111100000000   00233445667788899999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCccchhcchHhHhhhcccccCC
Q 004835          668 CLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDN  709 (728)
Q Consensus       668 ~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~~~~~~~~~~~  709 (728)
                      ||..||.+|+||+++|+||||.++++..+.+..+.+...+.+
T Consensus       364 ~le~np~kRitAEeALkHpFF~~~~~~~~~~~~~~~~~~~~~  405 (418)
T KOG1167|consen  364 CLELNPQKRITAEDALKHPFFDEADRTERGLQDLLQEGTFRK  405 (418)
T ss_pred             HccCChhhcccHHHHhcCcCCcchhhhhhhhHHHhhcCchhh
Confidence            999999999999999999999999999998886655555533

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-41  Score=363.92  Aligned_cols=244  Identities=24%  Similarity=0.373  Sum_probs=201.1

Q ss_pred             ecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCC
Q 004835          209 EGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       209 LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~  283 (728)
                      ||+|+||.||+|++..+++.||+|++...     .....+.+|+.++.+++|++ |+++++++...+..|+||||+.++.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~e~~~~g~   79 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPF-IVPLKFSFQSPEKLYLVLAFINGGE   79 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCc-EeceeeEEecCCeEEEEEcCCCCCc
Confidence            69999999999999999999999998642     22345778999999999999 9999999999999999999999998


Q ss_pred             hHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCCCcC
Q 004835          284 PEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY  360 (728)
Q Consensus       284 l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~t~y  360 (728)
                      +..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||+++......           
T Consensus        80 L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~-~~~~~kl~Dfg~~~~~~~~~-----------  147 (312)
T cd05585          80 LFHHLQREGRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENILLD-YQGHIALCDFGLCKLNMKDD-----------  147 (312)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEEC-CCCcEEEEECcccccCccCC-----------
Confidence            866543   388999999999999999999999999999999999998 66789999999986310000           


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCcccccC
Q 004835          361 VPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAERLR  440 (728)
Q Consensus       361 ipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (728)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (312)
T cd05585         148 --------------------------------------------------------------------------------  147 (312)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCchhHH
Q 004835          441 EPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQ  520 (728)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  520 (728)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (312)
T cd05585         148 --------------------------------------------------------------------------------  147 (312)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCChHHH
Q 004835          521 ILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNI  600 (728)
Q Consensus       521 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~~~l  600 (728)
                                               ......+||+.|+|||++.+.. ++.++|||||||++|+|++|..||.+.....+
T Consensus       148 -------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwslGvil~el~tg~~pf~~~~~~~~  201 (312)
T cd05585         148 -------------------------DKTNTFCGTPEYLAPELLLGHG-YTKAVDWWTLGVLLYEMLTGLPPFYDENVNEM  201 (312)
T ss_pred             -------------------------CccccccCCcccCCHHHHcCCC-CCCccceechhHHHHHHHhCCCCcCCCCHHHH
Confidence                                     0011346899999999996554 69999999999999999999999987665433


Q ss_pred             HHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC---
Q 004835          601 KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI---  677 (728)
Q Consensus       601 ~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp---  677 (728)
                      ...+                                          ......++..+++.+.+||.+||..||++||   
T Consensus       202 ~~~~------------------------------------------~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~  239 (312)
T cd05585         202 YRKI------------------------------------------LQEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGYN  239 (312)
T ss_pred             HHHH------------------------------------------HcCCCCCCCcCCHHHHHHHHHHcCCCHHHcCCCC
Confidence            2211                                          1112334456788999999999999999997   


Q ss_pred             CHHHHhcCCCCccchh
Q 004835          678 SAEDALKHEFFAPCHE  693 (728)
Q Consensus       678 ta~e~L~Hp~f~~~~~  693 (728)
                      +|.++|+||||.+...
T Consensus       240 ~~~e~l~hp~~~~~~~  255 (312)
T cd05585         240 GAQEIKNHPFFSQLSW  255 (312)
T ss_pred             CHHHHHcCCCcCCCCH
Confidence            5899999999998753

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=1.5e-41  Score=367.13  Aligned_cols=251  Identities=25%  Similarity=0.371  Sum_probs=205.2

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH  281 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~  281 (728)
                      +.||+|+||.||+|++..+|+.||+|++...     .....+.+|+.+++.+.|++ |+++++++...+..|+||||+.+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~lv~Ey~~~   79 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPF-LTSLKYSFQTKDRLCFVMEYVNG   79 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCC-CcceEEEEEcCCEEEEEEeCCCC
Confidence            3689999999999999999999999998743     22345778999999999998 99999999999999999999999


Q ss_pred             CChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCCC
Q 004835          282 DRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT  358 (728)
Q Consensus       282 ~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~t  358 (728)
                      +.+.....   .+++..++.++.||+.||+|||++||+||||||+||||+ .++.+||+|||+++......         
T Consensus        80 g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~-~~~~~kL~DfG~~~~~~~~~---------  149 (328)
T cd05593          80 GELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLD-KDGHIKITDFGLCKEGITDA---------  149 (328)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEEC-CCCcEEEecCcCCccCCCcc---------
Confidence            88865542   388999999999999999999999999999999999999 66789999999986310000         


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCcccc
Q 004835          359 KYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAER  438 (728)
Q Consensus       359 ~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (728)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (328)
T cd05593         150 --------------------------------------------------------------------------------  149 (328)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCchh
Q 004835          439 LREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSD  518 (728)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  518 (728)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (328)
T cd05593         150 --------------------------------------------------------------------------------  149 (328)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCChH
Q 004835          519 LQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ  598 (728)
Q Consensus       519 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~~  598 (728)
                                                 ......+||+.|+|||++.+.. ++.++|||||||++|+|++|+.||.+.+..
T Consensus       150 ---------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslGvil~elltG~~Pf~~~~~~  201 (328)
T cd05593         150 ---------------------------ATMKTFCGTPEYLAPEVLEDND-YGRAVDWWGLGVVMYEMMCGRLPFYNQDHE  201 (328)
T ss_pred             ---------------------------cccccccCCcCccChhhhcCCC-CCccCCccccchHHHHHhhCCCCCCCCCHH
Confidence                                       0001245899999999995554 699999999999999999999999876654


Q ss_pred             HHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC-
Q 004835          599 NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI-  677 (728)
Q Consensus       599 ~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp-  677 (728)
                      .+...+.                                          .....++..++.++.+||.+||..||++|+ 
T Consensus       202 ~~~~~~~------------------------------------------~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~  239 (328)
T cd05593         202 KLFELIL------------------------------------------MEDIKFPRTLSADAKSLLSGLLIKDPNKRLG  239 (328)
T ss_pred             HHHHHhc------------------------------------------cCCccCCCCCCHHHHHHHHHHcCCCHHHcCC
Confidence            4333221                                          111233456788999999999999999997 


Q ss_pred             ----CHHHHhcCCCCccchhcchHh
Q 004835          678 ----SAEDALKHEFFAPCHEMLRKQ  698 (728)
Q Consensus       678 ----ta~e~L~Hp~f~~~~~~~~~~  698 (728)
                          ++.++++||||.++.+.....
T Consensus       240 ~~~~~~~~il~h~~~~~~~~~~~~~  264 (328)
T cd05593         240 GGPDDAKEIMRHSFFTGVNWQDVYD  264 (328)
T ss_pred             CCCCCHHHHhcCCCcCCCCHHHHHh
Confidence                899999999999877654443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=7.5e-43  Score=358.68  Aligned_cols=293  Identities=25%  Similarity=0.363  Sum_probs=226.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCC----eEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEe-C
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDG----TVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKC-G  269 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g----~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~-~  269 (728)
                      .+..|+++..||+|+||.||+|....++    +.+|||.+...    .......+|+.+++.++|+| |+.+..+|.. .
T Consensus        22 ~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~n-vi~Lv~Vfl~~d  100 (438)
T KOG0666|consen   22 DLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPN-VISLVKVFLSHD  100 (438)
T ss_pred             HHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCc-chhHHHHHhccC
Confidence            3568999999999999999999765443    37999999865    33455779999999999999 9999888887 7


Q ss_pred             CeeEEEEeccCCCChHHHh-------hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC---CCceEEEee
Q 004835          270 DSDCFVLEHVKHDRPEVLK-------KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK---AVKGYLIDF  339 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~-------~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~---~~~~kL~DF  339 (728)
                      ...++++||.+++++..+.       +.++...++.|+.||+.|+.|||++-|+||||||+|||+..+   .+.+||+||
T Consensus       101 ~~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDl  180 (438)
T KOG0666|consen  101 KKVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADL  180 (438)
T ss_pred             ceEEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecc
Confidence            7899999999999987764       238889999999999999999999999999999999999844   378999999


Q ss_pred             eccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCC
Q 004835          340 NLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGAD  419 (728)
Q Consensus       340 GlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~  419 (728)
                      |+++...+               |                                                 +      
T Consensus       181 GlaR~~~~---------------p-------------------------------------------------l------  190 (438)
T KOG0666|consen  181 GLARLFNN---------------P-------------------------------------------------L------  190 (438)
T ss_pred             cHHHHhhc---------------c-------------------------------------------------c------
Confidence            99986211               0                                                 0      


Q ss_pred             CCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCC
Q 004835          420 GSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSN  499 (728)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  499 (728)
                                                                                              .|+     
T Consensus       191 ------------------------------------------------------------------------kpl-----  193 (438)
T KOG0666|consen  191 ------------------------------------------------------------------------KPL-----  193 (438)
T ss_pred             ------------------------------------------------------------------------ccc-----
Confidence                                                                                    000     


Q ss_pred             CcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHH
Q 004835          500 GIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAG  579 (728)
Q Consensus       500 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG  579 (728)
                                                                    -...+.|-|.+|||||.|+|..+|+.++||||+|
T Consensus       194 ----------------------------------------------~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiG  227 (438)
T KOG0666|consen  194 ----------------------------------------------ASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIG  227 (438)
T ss_pred             ----------------------------------------------ccCCceEEEEEecChHHhcccccccchhhhHHHH
Confidence                                                          0011456799999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCC----------hHHHHHHHHHhCCchHHHHHHhccCCCCCcchhh--cccCCCCCCchhhhhhh
Q 004835          580 VTLLYLMIGRTPFFGDP----------EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLY--AAKSLPPINLPEWCKLI  647 (728)
Q Consensus       580 ~il~eLltG~~PF~~~~----------~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  647 (728)
                      ||+.||++-.+.|.++.          .+++..|++++|.|....+..+.+. ..|...+.  ....+.+..+..|....
T Consensus       228 CIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~-Pe~q~~ls~f~~~~~~n~sL~~~~~~~  306 (438)
T KOG0666|consen  228 CIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKM-PEYQTLLSDFRRHYYDNVSLHKYYHKH  306 (438)
T ss_pred             HHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhC-cchHHHHHHhHHhhcCcchHHHHHHHh
Confidence            99999999999997632          2579999999998643322222111 11111111  11223333455565443


Q ss_pred             ccCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchh
Q 004835          648 TKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       648 ~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      .       .-++.+.+|+.+||++||-+|+||+++|+|+||+...-
T Consensus       307 k-------~k~~~a~~LL~klL~yDP~kRIta~qAleh~yF~~d~l  345 (438)
T KOG0666|consen  307 K-------VKDPSALDLLQKLLTYDPIKRITAEQALEHPYFTEDPL  345 (438)
T ss_pred             c-------CCCchHHHHHHHHhccCchhhccHHHHhcccccccCCC
Confidence            2       23556999999999999999999999999999997643

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=2e-41  Score=365.38  Aligned_cols=142  Identities=25%  Similarity=0.358  Sum_probs=123.0

Q ss_pred             CeeEEEEecccCceEEEEEEEc---CCCeEEEEEeccCc------CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          202 SFIVEEEEGSGGYGTVYRARRK---NDGTVVAIKCPHAN------ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~---~~g~~VAIK~i~~~------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      +|++.+.||+|+||.||+|+..   .+++.||+|++...      .....+.+|+.++..+.|+++|+++++++...+..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            5899999999999999999874   47899999998642      22345778999999997555599999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~-~~~~~kl~DfG~~~~  154 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLD-SEGHVVLTDFGLSKE  154 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEEC-CCCCEEEeeCcCCcc
Confidence            99999999988766542   388999999999999999999999999999999999999 667899999999863

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=3e-41  Score=363.38  Aligned_cols=253  Identities=26%  Similarity=0.388  Sum_probs=205.5

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHH---HhcCCCCceEEecceEEeCCeeEE
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRML---ERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL---~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      |++.+.||+|+||.||+|.+..+|+.||||++...     .....+.+|+.++   ..+.|+| |+++++++..++..|+
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~-i~~~~~~~~~~~~~~l   79 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPF-LVNLFACFQTEDHVCF   79 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCC-hhceeeEEEcCCEEEE
Confidence            78899999999999999999999999999998643     2234566676655   4667988 9999999999999999


Q ss_pred             EEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          275 VLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       275 V~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      ||||+.++.+.....  .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++......    
T Consensus        80 v~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~-~~~~~kL~Dfg~~~~~~~~----  154 (324)
T cd05589          80 VMEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLD-TEGFVKIADFGLCKEGMGF----  154 (324)
T ss_pred             EEcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEEC-CCCcEEeCcccCCccCCCC----
Confidence            999999998876653  489999999999999999999999999999999999999 6678999999998631000    


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (324)
T cd05589         155 --------------------------------------------------------------------------------  154 (324)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (324)
T cd05589         155 --------------------------------------------------------------------------------  154 (324)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                      .......+||+.|+|||++.+.. ++.++|||||||++|+|++|..||
T Consensus       155 --------------------------------~~~~~~~~g~~~y~aPE~~~~~~-~~~~~DiwslG~il~el~~G~~pf  201 (324)
T cd05589         155 --------------------------------GDRTSTFCGTPEFLAPEVLTETS-YTRAVDWWGLGVLIYEMLVGESPF  201 (324)
T ss_pred             --------------------------------CCcccccccCccccCHhHhcCCC-CCcccchhhHHHHHHHHHhCCCCC
Confidence                                            00011346899999999996554 699999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       593 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      .+.+...+...+.                                          .....++..++..+.+||.+||..|
T Consensus       202 ~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~~~~~~~li~~~L~~d  239 (324)
T cd05589         202 PGDDEEEVFDSIV------------------------------------------NDEVRYPRFLSREAISIMRRLLRRN  239 (324)
T ss_pred             CCCCHHHHHHHHH------------------------------------------hCCCCCCCCCCHHHHHHHHHHhhcC
Confidence            8876654433221                                          0112234457889999999999999


Q ss_pred             CCCCC-----CHHHHhcCCCCccchhcch
Q 004835          673 PRLRI-----SAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       673 P~~Rp-----ta~e~L~Hp~f~~~~~~~~  696 (728)
                      |.+||     ++.++++||||+++.....
T Consensus       240 P~~R~~~~~~~~~~l~~~~~f~~~~~~~~  268 (324)
T cd05589         240 PERRLGSGEKDAEDVKKQPFFRDINWDDL  268 (324)
T ss_pred             HhHcCCCCCCCHHHHhhCCCcCCCCHHHH
Confidence            99999     6999999999998865443

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=5e-41  Score=367.68  Aligned_cols=142  Identities=24%  Similarity=0.297  Sum_probs=127.9

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||+||+|++..+++.||||++...     .....+.+|+.++..++|++ |+++++++.+....|+|
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~-iv~~~~~~~~~~~~~lv   79 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLW-VVKMFYSFQDKLNLYLI   79 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCC-cceEEEEEecCCeEEEE
Confidence            4799999999999999999999999999999998743     22345778999999999998 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||++++.+..+..   .+++..++.++.||+.||+|||++||+||||||+||||+ .++.+||+|||+++.
T Consensus        80 ~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~-~~~~vkL~DFGla~~  150 (363)
T cd05628          80 MEFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLD-SKGHVKLSDFGLCTG  150 (363)
T ss_pred             EcCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEEC-CCCCEEEeeccCccc
Confidence            99999988876653   388999999999999999999999999999999999999 567899999999975

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=3e-41  Score=363.19  Aligned_cols=261  Identities=23%  Similarity=0.335  Sum_probs=211.5

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +|.+.+.||+|+||.||+|++..+++.||||++....     ....+..|..++..+.|+++|+++++++...+..|+||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            5899999999999999999999999999999987432     22345678888888877777999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      ||+.++.+.....   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||+++......    
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~-~~~~~kL~DfG~~~~~~~~~----  155 (323)
T cd05616          81 EYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLD-SEGHIKIADFGMCKENMWDG----  155 (323)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEEC-CCCcEEEccCCCceecCCCC----
Confidence            9999988866543   488999999999999999999999999999999999999 66789999999986310000    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (323)
T cd05616         156 --------------------------------------------------------------------------------  155 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (323)
T cd05616         156 --------------------------------------------------------------------------------  155 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                      ......+||+.|+|||++.+.. ++.++|||||||++|||++|+.||.
T Consensus       156 --------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlGvil~elltg~~Pf~  202 (323)
T cd05616         156 --------------------------------VTTKTFCGTPDYIAPEIIAYQP-YGKSVDWWAFGVLLYEMLAGQAPFE  202 (323)
T ss_pred             --------------------------------CccccCCCChhhcCHHHhcCCC-CCCccchhchhHHHHHHHhCCCCCC
Confidence                                            0001345899999999996554 6999999999999999999999998


Q ss_pred             CCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCC
Q 004835          594 GDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNP  673 (728)
Q Consensus       594 ~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP  673 (728)
                      +.+...+...+.                                          .....++..++.++.+||.+||..||
T Consensus       203 ~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~~li~~~l~~~p  240 (323)
T cd05616         203 GEDEDELFQSIM------------------------------------------EHNVAYPKSMSKEAVAICKGLMTKHP  240 (323)
T ss_pred             CCCHHHHHHHHH------------------------------------------hCCCCCCCcCCHHHHHHHHHHcccCH
Confidence            877655433221                                          01123344678899999999999999


Q ss_pred             CCCCC-----HHHHhcCCCCccchhcchHhHhhh
Q 004835          674 RLRIS-----AEDALKHEFFAPCHEMLRKQKLLR  702 (728)
Q Consensus       674 ~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~~  702 (728)
                      .+|++     ..++++||||+.+.+.....+.+.
T Consensus       241 ~~R~~~~~~~~~~i~~h~~~~~~~~~~~~~~~~~  274 (323)
T cd05616         241 GKRLGCGPEGERDIKEHAFFRYIDWEKLERKEVQ  274 (323)
T ss_pred             HhcCCCCCCCHHHHhcCCCcCCCCHHHHHhCCCC
Confidence            99998     489999999998886655544443

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=2e-41  Score=365.02  Aligned_cols=253  Identities=25%  Similarity=0.373  Sum_probs=206.3

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH  281 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~  281 (728)
                      +.||+|+||.||+|++..+|+.||+|++...     .....+.+|+.++..+.|++ |++++++|...+..|+||||+.+
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-i~~~~~~~~~~~~~~lv~E~~~~   79 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF-LTALKYAFQTHDRLCFVMEYANG   79 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCC-CcceeeEEecCCEEEEEEeCCCC
Confidence            3689999999999999999999999998643     22345678999999999998 99999999999999999999999


Q ss_pred             CChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCCC
Q 004835          282 DRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT  358 (728)
Q Consensus       282 ~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~t  358 (728)
                      +.+..+..   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++.......         
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~-~~~~~kL~Dfg~~~~~~~~~---------  149 (323)
T cd05595          80 GELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLD-KDGHIKITDFGLCKEGISDG---------  149 (323)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEc-CCCCEEecccHHhccccCCC---------
Confidence            98866543   388999999999999999999999999999999999999 66789999999986310000         


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCcccc
Q 004835          359 KYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAER  438 (728)
Q Consensus       359 ~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (728)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (323)
T cd05595         150 --------------------------------------------------------------------------------  149 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCchh
Q 004835          439 LREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSD  518 (728)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  518 (728)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (323)
T cd05595         150 --------------------------------------------------------------------------------  149 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCChH
Q 004835          519 LQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ  598 (728)
Q Consensus       519 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~~  598 (728)
                                                 .......||+.|+|||++.+.. ++.++|||||||++|+|++|+.||.+.+..
T Consensus       150 ---------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlGvil~ell~g~~Pf~~~~~~  201 (323)
T cd05595         150 ---------------------------ATMKTFCGTPEYLAPEVLEDND-YGRAVDWWGLGVVMYEMMCGRLPFYNQDHE  201 (323)
T ss_pred             ---------------------------CccccccCCcCcCCcccccCCC-CCchhchhhhHHHHHHHHhCCCCCCCCCHH
Confidence                                       0001235899999999996554 699999999999999999999999876654


Q ss_pred             HHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC-
Q 004835          599 NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI-  677 (728)
Q Consensus       599 ~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp-  677 (728)
                      .+...+.                                          .....++..+++.+.+||.+||..||++|+ 
T Consensus       202 ~~~~~~~------------------------------------------~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~  239 (323)
T cd05595         202 RLFELIL------------------------------------------MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLG  239 (323)
T ss_pred             HHHHHHh------------------------------------------cCCCCCCCCCCHHHHHHHHHHccCCHHHhCC
Confidence            4433221                                          011233456789999999999999999998 


Q ss_pred             ----CHHHHhcCCCCccchhcchHhHh
Q 004835          678 ----SAEDALKHEFFAPCHEMLRKQKL  700 (728)
Q Consensus       678 ----ta~e~L~Hp~f~~~~~~~~~~~~  700 (728)
                          ++.++++||||.++.+....+..
T Consensus       240 ~~~~~~~~~l~h~~~~~~~~~~~~~~~  266 (323)
T cd05595         240 GGPSDAKEVMEHRFFLSINWQDVVQKK  266 (323)
T ss_pred             CCCCCHHHHHcCCCcCCCCHHHHHhCC
Confidence                89999999999998766554433

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=6.8e-41  Score=352.70  Aligned_cols=272  Identities=28%  Similarity=0.394  Sum_probs=202.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcC-CCeEEEEEeccCcC----chhHHHHHHHHHHhc---CCCCceEEecceEE-----
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKN-DGTVVAIKCPHANA----SKHYVSNELRMLERF---GGKNFIIKYEGCFK-----  267 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~-~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L---~h~n~Ivkl~~~~~-----  267 (728)
                      ++|++.+.||+|+||.||+|++.. +++.||+|++....    ....+.+|+.+++.+   .|+| |+++++++.     
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpn-iv~~~~~~~~~~~~   79 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPN-VVRLFDVCTVSRTD   79 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCC-cceEEEEEecccCC
Confidence            379999999999999999999854 57899999876432    233456788777765   5888 999998875     


Q ss_pred             eCCeeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      ....+++||||+.+++...+..    .+++..++.++.||+.||.|||++||+||||||+|||++ .++.++|+|||++.
T Consensus        80 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~-~~~~~kl~Dfg~~~  158 (290)
T cd07862          80 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVT-SSGQIKLADFGLAR  158 (290)
T ss_pred             CCCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEc-CCCCEEEccccceE
Confidence            3456899999998765554432    278899999999999999999999999999999999998 66789999999986


Q ss_pred             cccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCc
Q 004835          344 VGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGI  423 (728)
Q Consensus       344 ~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~  423 (728)
                      .....                                                                           
T Consensus       159 ~~~~~---------------------------------------------------------------------------  163 (290)
T cd07862         159 IYSFQ---------------------------------------------------------------------------  163 (290)
T ss_pred             eccCC---------------------------------------------------------------------------
Confidence            41100                                                                           


Q ss_pred             cccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccc
Q 004835          424 TSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAV  503 (728)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (728)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (290)
T cd07862         164 --------------------------------------------------------------------------------  163 (290)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHH
Q 004835          504 AGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLL  583 (728)
Q Consensus       504 ~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~  583 (728)
                                                                .......||+.|+|||++.+.. ++.++|||||||++|
T Consensus       164 ------------------------------------------~~~~~~~~~~~y~aPE~~~~~~-~~~~~DiwslG~il~  200 (290)
T cd07862         164 ------------------------------------------MALTSVVVTLWYRAPEVLLQSS-YATPVDLWSVGCIFA  200 (290)
T ss_pred             ------------------------------------------cccccccccccccChHHHhCCC-CCCccchHHHHHHHH
Confidence                                                      0001335899999999996554 689999999999999


Q ss_pred             HHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHH
Q 004835          584 YLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF  662 (728)
Q Consensus       584 eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (728)
                      ||++|.+||.+... +.+..++...|.+.........    .++....  ...+...   +       ..+...++..+.
T Consensus       201 el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~---~-------~~~~~~~~~~~~  264 (290)
T cd07862         201 EMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDV----ALPRQAF--HSKSAQP---I-------EKFVTDIDELGK  264 (290)
T ss_pred             HHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhh----cccchhc--cCCCCCC---H-------HHHccCCCHHHH
Confidence            99999999988765 5677777776643321111000    0000000  0000000   0       012235778999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCC
Q 004835          663 DLVDKCLTVNPRLRISAEDALKHEFF  688 (728)
Q Consensus       663 dLi~~~L~~dP~~Rpta~e~L~Hp~f  688 (728)
                      +||.+||..||++|||+.|+|+||||
T Consensus       265 ~li~~~l~~~P~~R~s~~~~l~hp~f  290 (290)
T cd07862         265 DLLLKCLTFNPAKRISAYSALSHPYF  290 (290)
T ss_pred             HHHHHHhccCchhcCCHHHHhcCCCC
Confidence            99999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.4e-41  Score=368.08  Aligned_cols=142  Identities=23%  Similarity=0.302  Sum_probs=128.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||+||+|++..+|+.||||++...     .....+.+|+.++..++|++ |++++++|..++..|+|
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~-iv~~~~~~~~~~~~~lv   79 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPW-VVKLYYSFQDENYLYLI   79 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCC-CcceEEEEEcCCeEEEE
Confidence            4799999999999999999999999999999998643     22345778999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++.+..+..   .+++..++.++.||+.||+|||++||+||||||+||||+ .++.++|+|||++..
T Consensus        80 ~E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~-~~~~~kl~Dfg~~~~  150 (364)
T cd05599          80 MEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLD-AKGHIKLSDFGLCTG  150 (364)
T ss_pred             ECCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEEC-CCCCEEEeeccccee
Confidence            99999988876653   388999999999999999999999999999999999999 667899999999975

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.4e-43  Score=352.54  Aligned_cols=255  Identities=26%  Similarity=0.429  Sum_probs=210.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----------chhHHHHHHHHHHhcCCCCceEEecceEEeC
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----------SKHYVSNELRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      ++.|.-.+.||.|..++|.++..+.+|..+|+|++....          ..+....|+.||+++..+++|+.+.++|+++
T Consensus        16 y~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~   95 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESD   95 (411)
T ss_pred             HhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCc
Confidence            467888889999999999999999999999999876311          1234567999999987666699999999999


Q ss_pred             CeeEEEEeccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccccc
Q 004835          270 DSDCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGF  346 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~  346 (728)
                      ...++|+|.|+.|.|..++..   +++...+.|++|+++|+.|||.++||||||||+|||+| ++.+++|+|||+|..+.
T Consensus        96 sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILld-dn~~i~isDFGFa~~l~  174 (411)
T KOG0599|consen   96 AFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLD-DNMNIKISDFGFACQLE  174 (411)
T ss_pred             chhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeec-cccceEEeccceeeccC
Confidence            999999999998887766543   89999999999999999999999999999999999999 88899999999997532


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      .+                                                                              
T Consensus       175 ~G------------------------------------------------------------------------------  176 (411)
T KOG0599|consen  175 PG------------------------------------------------------------------------------  176 (411)
T ss_pred             Cc------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (411)
T KOG0599|consen  177 --------------------------------------------------------------------------------  176 (411)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhh-----ccCCCCCchhHHHHHHH
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLF-----RSQHQGPKLDIWSAGVT  581 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~-----~~~~~~~~~DIWSlG~i  581 (728)
                                                             .+....||||+|+|||.+.     +.+.|+..+|+||+|||
T Consensus       177 ---------------------------------------ekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVI  217 (411)
T KOG0599|consen  177 ---------------------------------------EKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVI  217 (411)
T ss_pred             ---------------------------------------hhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHH
Confidence                                                   1122568999999999883     34557889999999999


Q ss_pred             HHHHhcCCCCCCCCChH-HHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchh
Q 004835          582 LLYLMIGRTPFFGDPEQ-NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS  660 (728)
Q Consensus       582 l~eLltG~~PF~~~~~~-~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (728)
                      +|.|+.|.+||.....- .+..|++  |.             ..             ...++|           ..++..
T Consensus       218 myTLLaGcpPFwHRkQmlMLR~Ime--Gk-------------yq-------------F~speW-----------adis~~  258 (411)
T KOG0599|consen  218 MYTLLAGCPPFWHRKQMLMLRMIME--GK-------------YQ-------------FRSPEW-----------ADISAT  258 (411)
T ss_pred             HHHHHcCCCchhHHHHHHHHHHHHh--cc-------------cc-------------cCCcch-----------hhcccc
Confidence            99999999999876553 3333332  21             11             112334           567899


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCCccc
Q 004835          661 LFDLVDKCLTVNPRLRISAEDALKHEFFAPC  691 (728)
Q Consensus       661 l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~  691 (728)
                      ++|||.+||++||.+|+|++|+|.||||.++
T Consensus       259 ~KdLIsrlLqVdp~~Ritake~LaHpff~q~  289 (411)
T KOG0599|consen  259 VKDLISRLLQVDPTKRITAKEALAHPFFIQI  289 (411)
T ss_pred             HHHHHHHHHeeCchhcccHHHHhcChHHHHH
Confidence            9999999999999999999999999999654

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-41  Score=364.70  Aligned_cols=258  Identities=26%  Similarity=0.357  Sum_probs=210.0

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||.||+|++..+++.||||++...     .....+.+|+.++..++|++ |+++++++..++..|+|
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~-iv~~~~~~~~~~~~~lv   79 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEW-LVKLLYAFQDDEYLYLA   79 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCC-CccEEEEEEcCCEEEEE
Confidence            4799999999999999999999999999999998743     23345778999999999998 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |||++++.+..+..   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++.....     
T Consensus        80 ~e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~-~~~~~kL~Dfg~a~~~~~-----  153 (333)
T cd05600          80 MEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLID-ASGHIKLTDFGLSKGIVT-----  153 (333)
T ss_pred             EeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEC-CCCCEEEEeCcCCccccc-----
Confidence            99999999887764   378999999999999999999999999999999999999 667899999999863100     


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (333)
T cd05600         154 --------------------------------------------------------------------------------  153 (333)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (333)
T cd05600         154 --------------------------------------------------------------------------------  153 (333)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                        .....+||+.|+|||++.+. .++.++|||||||++|||++|.+||
T Consensus       154 ----------------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwslG~il~ell~g~~pf  198 (333)
T cd05600         154 ----------------------------------YANSVVGSPDYMAPEVLRGK-GYDFTVDYWSLGCMLYEFLCGFPPF  198 (333)
T ss_pred             ----------------------------------ccCCcccCccccChhHhcCC-CCCCccceecchHHHhhhhhCCCCC
Confidence                                              00134689999999999666 4699999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       593 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      .+.+.......+....            .....+               .+       ......++.++.+||.+||..+
T Consensus       199 ~~~~~~~~~~~i~~~~------------~~~~~~---------------~~-------~~~~~~~s~~~~~li~~~l~~~  244 (333)
T cd05600         199 SGSTPNETWENLKYWK------------ETLQRP---------------VY-------DDPRFNLSDEAWDLITKLINDP  244 (333)
T ss_pred             CCCCHHHHHHHHHhcc------------ccccCC---------------CC-------CccccccCHHHHHHHHHHhhCh
Confidence            8877654433221100            000000               00       0000246889999999999999


Q ss_pred             CCCCCCHHHHhcCCCCccchhc
Q 004835          673 PRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      |.+||+++++++||||+++...
T Consensus       245 ~~rr~s~~~ll~h~~~~~~~~~  266 (333)
T cd05600         245 SRRFGSLEDIKNHPFFKEVDWN  266 (333)
T ss_pred             hhhcCCHHHHHhCcccCCCCHH
Confidence            9999999999999999987653

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-42  Score=358.48  Aligned_cols=271  Identities=25%  Similarity=0.377  Sum_probs=232.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|+.+++||+|+||.|.+++.+.+|+.||||++++..     .......|-++|+..+||. +..+...|+..+.+|
T Consensus       166 Tm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPF-Lt~LKYsFQt~drlC  244 (516)
T KOG0690|consen  166 TMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPF-LTSLKYSFQTQDRLC  244 (516)
T ss_pred             ccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcH-HHHhhhhhccCceEE
Confidence            4678999999999999999999999999999999998653     2344567889999999998 888999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||..||.|...+.   -+++..++++...|+.||.|||+++||+||||.+|+|+| .++++||+|||+++..-.   
T Consensus       245 FVMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLD-kDGHIKitDFGLCKE~I~---  320 (516)
T KOG0690|consen  245 FVMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLD-KDGHIKITDFGLCKEEIK---  320 (516)
T ss_pred             EEEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheec-cCCceEeeecccchhccc---
Confidence            9999999988765543   399999999999999999999999999999999999999 677899999999974110   


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                              +|                      
T Consensus       321 --------------------------------------------------------~g----------------------  322 (516)
T KOG0690|consen  321 --------------------------------------------------------YG----------------------  322 (516)
T ss_pred             --------------------------------------------------------cc----------------------
Confidence                                                                    00                      


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       323 --------------------------------------------------------------------------------  322 (516)
T KOG0690|consen  323 --------------------------------------------------------------------------------  322 (516)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                         .....+||||.|+|||||. ...|+.++|||.+||++|||++|+.
T Consensus       323 -----------------------------------~t~kTFCGTPEYLAPEVle-DnDYgraVDWWG~GVVMYEMmCGRL  366 (516)
T KOG0690|consen  323 -----------------------------------DTTKTFCGTPEYLAPEVLE-DNDYGRAVDWWGVGVVMYEMMCGRL  366 (516)
T ss_pred             -----------------------------------ceeccccCChhhcCchhhc-cccccceeehhhhhHHHHHHHhccC
Confidence                                               0123678999999999994 4457999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||+..+.+.+.+.+-                                          .....|+..++++++.|+..+|.
T Consensus       367 PFyn~dh~kLFeLIl------------------------------------------~ed~kFPr~ls~eAktLLsGLL~  404 (516)
T KOG0690|consen  367 PFYNKDHEKLFELIL------------------------------------------MEDLKFPRTLSPEAKTLLSGLLK  404 (516)
T ss_pred             cccccchhHHHHHHH------------------------------------------hhhccCCccCCHHHHHHHHHHhh
Confidence            999888777666442                                          12346778899999999999999


Q ss_pred             cCCCCCCC-----HHHHhcCCCCccchhcchHhHhhhcccccCCC
Q 004835          671 VNPRLRIS-----AEDALKHEFFAPCHEMLRKQKLLRQGSSIDNT  710 (728)
Q Consensus       671 ~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~~~~~~~~~~  710 (728)
                      .||.+|..     |.|+++|+||..+.|....++.+.+...+.-+
T Consensus       405 kdP~kRLGgGpdDakEi~~h~FF~~v~W~~~~~Kki~PPfKPqVt  449 (516)
T KOG0690|consen  405 KDPKKRLGGGPDDAKEIMRHRFFASVDWEATYRKKIEPPFKPQVT  449 (516)
T ss_pred             cChHhhcCCCchhHHHHHhhhhhccCCHHHHHHhccCCCCCCCcc
Confidence            99999986     89999999999999999999888887766433

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.2e-40  Score=350.11  Aligned_cols=271  Identities=30%  Similarity=0.398  Sum_probs=204.7

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhc---CCCCceEEecceEEe-----C
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERF---GGKNFIIKYEGCFKC-----G  269 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L---~h~n~Ivkl~~~~~~-----~  269 (728)
                      +|++.+.||+|+||+||+|++..+|+.||+|.+....    ....+.+|+.+++.+   .|+| |+++++++..     .
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~n-i~~~~~~~~~~~~~~~   79 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPN-IVRLMDVCATSRTDRE   79 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCC-eeeeeeeeccccCCCC
Confidence            5899999999999999999999999999999886432    223456788777665   6888 9999988764     3


Q ss_pred             CeeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccc
Q 004835          270 DSDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVG  345 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~  345 (728)
                      ...++||||+.+++...+..    .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++...
T Consensus        80 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~-~~~~~kl~dfg~~~~~  158 (288)
T cd07863          80 TKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVT-SGGQVKLADFGLARIY  158 (288)
T ss_pred             ceEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEC-CCCCEEECccCccccc
Confidence            45899999999765554432    278999999999999999999999999999999999998 6677999999998641


Q ss_pred             cCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccc
Q 004835          346 FDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITS  425 (728)
Q Consensus       346 ~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~  425 (728)
                      ...                                                                             
T Consensus       159 ~~~-----------------------------------------------------------------------------  161 (288)
T cd07863         159 SCQ-----------------------------------------------------------------------------  161 (288)
T ss_pred             cCc-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             cccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccccc
Q 004835          426 AKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAG  505 (728)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (728)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (288)
T cd07863         162 --------------------------------------------------------------------------------  161 (288)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHH
Q 004835          506 AGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYL  585 (728)
Q Consensus       506 ~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eL  585 (728)
                                                              .......||..|+|||++.+.. ++.++||||+||++|+|
T Consensus       162 ----------------------------------------~~~~~~~~~~~y~aPE~~~~~~-~~~~~DiwslG~~l~~l  200 (288)
T cd07863         162 ----------------------------------------MALTPVVVTLWYRAPEVLLQST-YATPVDMWSVGCIFAEM  200 (288)
T ss_pred             ----------------------------------------ccCCCccccccccCchHhhCCC-CCCcchhhhHHHHHHHH
Confidence                                                    0001235788999999996655 69999999999999999


Q ss_pred             hcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHH
Q 004835          586 MIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL  664 (728)
Q Consensus       586 ltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dL  664 (728)
                      ++|.+||.+... +.+..++...|.+..........    .+.     ..........+       ..+...++..+.||
T Consensus       201 ~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~-------~~~~~~~~~~~~~l  264 (288)
T cd07863         201 FRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVT----LPR-----GAFSPRGPRPV-------QSVVPEIEESGAQL  264 (288)
T ss_pred             HhCCcCcCCCCHHHHHHHHHHHhCCCChhhCccccc----ccc-----cccCCCCCCch-------HHhCcCcCHHHHHH
Confidence            999999987665 56777777776543322111000    000     00000111111       12234577889999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCC
Q 004835          665 VDKCLTVNPRLRISAEDALKHEFF  688 (728)
Q Consensus       665 i~~~L~~dP~~Rpta~e~L~Hp~f  688 (728)
                      |.+||.+||++|||+.|++.||||
T Consensus       265 i~~~L~~dP~~R~t~~~~l~hp~f  288 (288)
T cd07863         265 LLEMLTFNPHKRISAFRALQHPFF  288 (288)
T ss_pred             HHHHhccCcccCCCHHHHhcCCCC
Confidence            999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=5.8e-41  Score=361.01  Aligned_cols=253  Identities=26%  Similarity=0.410  Sum_probs=203.3

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +.||+|+||.||+|++..+++.||||++...     .....+..|..++..+ .|++ |+++++++...+..|+||||+.
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~-iv~~~~~~~~~~~~~iv~Ey~~   79 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPF-LTQLYCCFQTPDRLFFVMEFVN   79 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCc-hhceeeEEEcCCEEEEEEcCCC
Confidence            3689999999999999999999999998643     2234566788888877 4776 9999999999999999999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCC
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG  357 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~  357 (728)
                      ++.+..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++.......        
T Consensus        80 ~g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~-~~~~~kL~DfG~~~~~~~~~--------  150 (320)
T cd05590          80 GGDLMFHIQKSRRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLD-HEGHCKLADFGMCKEGIFNG--------  150 (320)
T ss_pred             CchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEEC-CCCcEEEeeCCCCeecCcCC--------
Confidence            988866543   488999999999999999999999999999999999999 66789999999986310000        


Q ss_pred             CcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccc
Q 004835          358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAE  437 (728)
Q Consensus       358 t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (320)
T cd05590         151 --------------------------------------------------------------------------------  150 (320)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCch
Q 004835          438 RLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLS  517 (728)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  517 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (320)
T cd05590         151 --------------------------------------------------------------------------------  150 (320)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          518 DLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       518 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                                  ......+||+.|+|||++.+. .++.++|||||||++|+|++|+.||.+.+.
T Consensus       151 ----------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~il~el~~g~~Pf~~~~~  201 (320)
T cd05590         151 ----------------------------KTTSTFCGTPDYIAPEILQEM-LYGPSVDWWAMGVLLYEMLCGHAPFEAENE  201 (320)
T ss_pred             ----------------------------CcccccccCccccCHHHHcCC-CCCCccchhhhHHHHHHHhhCCCCCCCCCH
Confidence                                        001123589999999999554 469999999999999999999999988776


Q ss_pred             HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC
Q 004835          598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI  677 (728)
Q Consensus       598 ~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp  677 (728)
                      ..+...+.                                          .....++..++.++.+||.+||..||++|+
T Consensus       202 ~~~~~~i~------------------------------------------~~~~~~~~~~~~~~~~li~~~L~~dP~~R~  239 (320)
T cd05590         202 DDLFEAIL------------------------------------------NDEVVYPTWLSQDAVDILKAFMTKNPTMRL  239 (320)
T ss_pred             HHHHHHHh------------------------------------------cCCCCCCCCCCHHHHHHHHHHcccCHHHCC
Confidence            54433221                                          011122344678999999999999999999


Q ss_pred             CH------HHHhcCCCCccchhcchHhHh
Q 004835          678 SA------EDALKHEFFAPCHEMLRKQKL  700 (728)
Q Consensus       678 ta------~e~L~Hp~f~~~~~~~~~~~~  700 (728)
                      ++      +++++||||..+.+.....+.
T Consensus       240 ~~~~~~~~~~~~~h~~f~~~~~~~~~~~~  268 (320)
T cd05590         240 GSLTLGGEEAILRHPFFKELDWEKLNRRQ  268 (320)
T ss_pred             CCCCCCCHHHHHcCCCcCCCCHHHHHhCC
Confidence            98      999999999988765444333

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-40  Score=351.98  Aligned_cols=262  Identities=23%  Similarity=0.357  Sum_probs=210.5

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .|++.++||+|+||+||++.+..+++.||+|++....     ....+.+|+.+++.++|++ |+.+++++..++..|+||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~   79 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRF-VVSLAYAYETKDALCLVL   79 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCC-EeeeeeeecCCCeEEEEE
Confidence            4899999999999999999999899999999986432     2244678999999999999 999999999999999999


Q ss_pred             eccCCCChHHHh-----hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          277 EHVKHDRPEVLK-----KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       277 E~~~~~~l~~l~-----~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      ||+.++.+..+.     ..+++..+..++.|++.||.|||+.||+||||||+||+++ +++.++|+|||++.......  
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~-~~~~~~l~Dfg~~~~~~~~~--  156 (285)
T cd05605          80 TLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLD-DYGHIRISDLGLAVEIPEGE--  156 (285)
T ss_pred             eccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEEC-CCCCEEEeeCCCceecCCCC--
Confidence            999998886553     2378999999999999999999999999999999999998 66789999999986411000  


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (285)
T cd05605         157 --------------------------------------------------------------------------------  156 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (285)
T cd05605         157 --------------------------------------------------------------------------------  156 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                         .....+||+.|+|||++.+.. ++.++||||+||++|+|++|..|
T Consensus       157 -----------------------------------~~~~~~~~~~y~aPE~~~~~~-~~~~~Diws~G~~l~el~~g~~p  200 (285)
T cd05605         157 -----------------------------------TIRGRVGTVGYMAPEVVKNER-YTFSPDWWGLGCLIYEMIEGKSP  200 (285)
T ss_pred             -----------------------------------ccccccCCCCccCcHHhcCCC-CCccccchhHHHHHHHHHHCCCC
Confidence                                               001235899999999996554 68999999999999999999999


Q ss_pred             CCCCChHHHH-HHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          592 FFGDPEQNIK-DIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       592 F~~~~~~~l~-~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      |.+....... .+...                                       +......++..++..+.+||.+||.
T Consensus       201 f~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~li~~~l~  241 (285)
T cd05605         201 FRQRKEKVKREEVERR---------------------------------------VKEDQEEYSEKFSEAARSICRQLLT  241 (285)
T ss_pred             CCCCchhhHHHHHHHH---------------------------------------hhhcccccCcccCHHHHHHHHHHcc
Confidence            9876543221 11110                                       0011123345678899999999999


Q ss_pred             cCCCCCC-----CHHHHhcCCCCccchhcchHhHhhh
Q 004835          671 VNPRLRI-----SAEDALKHEFFAPCHEMLRKQKLLR  702 (728)
Q Consensus       671 ~dP~~Rp-----ta~e~L~Hp~f~~~~~~~~~~~~~~  702 (728)
                      .||.+||     +++++++||||....+...++.++.
T Consensus       242 ~~P~~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  278 (285)
T cd05605         242 KDPGFRLGCRGEGAEEVKAHPFFRTANFKRLEAGMLE  278 (285)
T ss_pred             CCHHHhcCCCCCCHHHHhcCcCccCCCHHHHhhCCCC
Confidence            9999999     8999999999998776655554443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=2e-40  Score=353.58  Aligned_cols=138  Identities=24%  Similarity=0.376  Sum_probs=117.1

Q ss_pred             EEEecccCceEEEEEEEcC--CCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEe--CCeeEEEEeccCC
Q 004835          206 EEEEGSGGYGTVYRARRKN--DGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKC--GDSDCFVLEHVKH  281 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~--~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--~~~~~LV~E~~~~  281 (728)
                      ..+||+|+||.||+|+...  ++..||+|.+........+.+|+.+++.++|+| |+++++++..  +...|+||||+++
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPN-VIALQKVFLSHSDRKVWLLFDYAEH   84 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCCC-eeeEEEEEeccCCCeEEEEEeeeCC
Confidence            3589999999999999754  568999999877665666789999999999999 9999998853  5678999999998


Q ss_pred             CChHHHhh-----------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee---cCCCceEEEeeecccc
Q 004835          282 DRPEVLKK-----------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS---CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       282 ~~l~~l~~-----------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld---~~~~~~kL~DFGlA~~  344 (728)
                      ++...+..           .+++..++.++.||+.||.|||++||+||||||+|||+.   ...+.+||+|||+++.
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07867          85 DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceec
Confidence            76655421           277888999999999999999999999999999999994   2456799999999974

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=1.9e-40  Score=352.37  Aligned_cols=286  Identities=25%  Similarity=0.375  Sum_probs=216.9

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      .+++|.+.+.||.|+||.||+|++..+++.||+|.+....   ....+.+|+.+++.++|+| |+++++++......|+|
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n-I~~~~~~~~~~~~~~lv   82 (301)
T cd07873           4 KLETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHAN-IVTLHDIIHTEKSLTLV   82 (301)
T ss_pred             cccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCC-cceEEEEEecCCeEEEE
Confidence            3578999999999999999999999899999999886432   2345778999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |||+.+++...+..   .+++..+..++.||+.||.|||+.||+||||||+|||++ .++.++|+|||++.......   
T Consensus        83 ~e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~-~~~~~kl~dfg~~~~~~~~~---  158 (301)
T cd07873          83 FEYLDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLIN-ERGELKLADFGLARAKSIPT---  158 (301)
T ss_pred             EeccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEEC-CCCcEEECcCcchhccCCCC---
Confidence            99999765555443   378899999999999999999999999999999999999 66789999999986310000   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (301)
T cd07873         159 --------------------------------------------------------------------------------  158 (301)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (301)
T cd07873         159 --------------------------------------------------------------------------------  158 (301)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                       .......+++.|+|||++.+...++.++|||||||++|+|++|++||
T Consensus       159 ---------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f  205 (301)
T cd07873         159 ---------------------------------KTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLF  205 (301)
T ss_pred             ---------------------------------CcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCC
Confidence                                             00012246888999999877666789999999999999999999999


Q ss_pred             CCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          593 FGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       593 ~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      .+.+. +.+..+...++.+....+..+... ..|..     ...+......       .......+++.+.+||.+||++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~-------~~~~~~~~~~~~~~li~~ml~~  272 (301)
T cd07873         206 PGSTVEEQLHFIFRILGTPTEETWPGILSN-EEFKS-----YNYPKYRADC-------LHNHAPRLDSDGAELLSKLLQF  272 (301)
T ss_pred             CCCCHHHHHHHHHHHcCCCChhhchhhhcc-ccccc-----cccCcccccc-------HHhhcCCCCHHHHHHHHHHhcC
Confidence            87665 456666666665322111111000 00000     0000000000       0112245788999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccchhcc
Q 004835          672 NPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      ||.+|||++|+|+||||..+.+..
T Consensus       273 dp~~R~t~~eil~h~~f~~~~~~~  296 (301)
T cd07873         273 EGRKRISAEEAMKHPYFHCLGERI  296 (301)
T ss_pred             CcccCcCHHHHhcCcccccccchh
Confidence            999999999999999998776543

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=1.2e-40  Score=359.08  Aligned_cols=260  Identities=22%  Similarity=0.335  Sum_probs=211.2

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +|++.+.||+|+||.||+|++..+|+.||||++...     .....+..|..++..+.|+++|+++++++...+..|+||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            478899999999999999999999999999998743     223456788999999988887999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      ||++++.+..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++.......    
T Consensus        81 Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~-~~~~ikL~Dfg~~~~~~~~~----  155 (323)
T cd05615          81 EYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLD-SEGHIKIADFGMCKEHMVDG----  155 (323)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEEC-CCCCEEEeccccccccCCCC----
Confidence            9999988876653   388999999999999999999999999999999999999 66789999999986310000    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (323)
T cd05615         156 --------------------------------------------------------------------------------  155 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (323)
T cd05615         156 --------------------------------------------------------------------------------  155 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                      ......+||+.|+|||++.+.. ++.++||||+||++|+|++|++||.
T Consensus       156 --------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslGvil~elltG~~pf~  202 (323)
T cd05615         156 --------------------------------VTTRTFCGTPDYIAPEIIAYQP-YGKSVDWWAYGVLLYEMLAGQPPFD  202 (323)
T ss_pred             --------------------------------ccccCccCCccccCHHHHcCCC-CCCccchhhhHHHHHHHHhCCCCCC
Confidence                                            0001235899999999996544 6999999999999999999999998


Q ss_pred             CCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCC
Q 004835          594 GDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNP  673 (728)
Q Consensus       594 ~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP  673 (728)
                      +.....+.+.+.                                          .....++..++..+.+|+.+||..||
T Consensus       203 ~~~~~~~~~~i~------------------------------------------~~~~~~p~~~~~~~~~li~~~l~~~p  240 (323)
T cd05615         203 GEDEDELFQSIM------------------------------------------EHNVSYPKSLSKEAVSICKGLMTKHP  240 (323)
T ss_pred             CCCHHHHHHHHH------------------------------------------hCCCCCCccCCHHHHHHHHHHcccCH
Confidence            877654433221                                          01122334567899999999999999


Q ss_pred             CCCCC-----HHHHhcCCCCccchhcchHhHhh
Q 004835          674 RLRIS-----AEDALKHEFFAPCHEMLRKQKLL  701 (728)
Q Consensus       674 ~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~  701 (728)
                      .+|++     .+++++||||..+.+..-.++.+
T Consensus       241 ~~R~~~~~~~~~~i~~h~~f~~~~~~~~~~~~~  273 (323)
T cd05615         241 SKRLGCGPEGERDIREHAFFRRIDWDKLENREI  273 (323)
T ss_pred             hhCCCCCCCCHHHHhcCcccCCCCHHHHhcCCC
Confidence            99997     57999999999987665555443

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=1e-40  Score=366.85  Aligned_cols=144  Identities=26%  Similarity=0.325  Sum_probs=129.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..++|++.+.||+|+||.||+|++..+++.||+|++...     .....+.+|+.++..++|++ |+++++++..+...|
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~-iv~~~~~~~~~~~~~  119 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEW-IVQLHYAFQDDKYLY  119 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCC-cceEEEEEecCCEEE
Confidence            457899999999999999999999999999999998642     22345678999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhhc--CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||++++++..+...  +++..+..++.||+.||+|||++||+||||||+|||++ .++.+||+|||++..
T Consensus       120 lv~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~-~~~~~kL~DfG~~~~  191 (370)
T cd05596         120 MVMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLD-KSGHLKLADFGTCMK  191 (370)
T ss_pred             EEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEc-CCCCEEEEeccceee
Confidence            99999999988777643  78889999999999999999999999999999999999 677899999999864

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5e-41  Score=363.86  Aligned_cols=142  Identities=28%  Similarity=0.337  Sum_probs=128.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|.+.+.||+|+||+||+|++..+|+.||||++...     .....+.+|+.++..+.|++ |+++++++..++..|+|
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~~~~~~lv   79 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPW-IVKLYYSFQDEEHLYLV   79 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCC-ccchhhheecCCeEEEE
Confidence            4799999999999999999999999999999998743     23456788999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++.+..+..   .+++..++.++.||+.||+|||++||+||||||+||||+ .++.++|+|||++..
T Consensus        80 ~e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~-~~~~~kL~Dfg~~~~  150 (350)
T cd05573          80 MEYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILID-ADGHIKLADFGLCKK  150 (350)
T ss_pred             EcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEEC-CCCCEEeecCCCCcc
Confidence            99999988776653   388999999999999999999999999999999999999 667899999999875

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-40  Score=366.56  Aligned_cols=142  Identities=22%  Similarity=0.300  Sum_probs=127.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|.+++.||+|+||.||+|++..+|+.||||++...     .....+.+|+.++..+.|++ |++++++|.++...|+|
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~-iv~~~~~~~~~~~~~lv   79 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPW-VVSLYYSFQDAQYLYLI   79 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCC-cceEEEEEEcCCeeEEE
Confidence            4799999999999999999999999999999987642     22345778999999999998 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||++++.+..+..   .+++..++.++.|++.||+|||++||+||||||+||||+ .++.++|+|||+++.
T Consensus        80 ~E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~-~~~~~kl~DfGla~~  150 (377)
T cd05629          80 MEFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILID-RGGHIKLSDFGLSTG  150 (377)
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEC-CCCCEEEeecccccc
Confidence            99999988876653   378899999999999999999999999999999999998 667899999999964

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=2.3e-40  Score=364.97  Aligned_cols=141  Identities=25%  Similarity=0.291  Sum_probs=127.1

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .|++++.||+|+||+||+|++..+++.||||++....     ....+.+|+.++..++|++ |+++++++.+++..|+||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~-iv~l~~~~~~~~~~~lv~   80 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEW-VVKLYYSFQDKDNLYFVM   80 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCC-eeeeEEEEecCCEEEEEE
Confidence            6899999999999999999999999999999986432     2345788999999999998 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||++++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ ..+.++|+|||++..
T Consensus        81 E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~-~~~~~kL~DFGl~~~  150 (381)
T cd05626          81 DYIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILID-LDGHIKLTDFGLCTG  150 (381)
T ss_pred             ecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEEC-CCCCEEEeeCcCCcc
Confidence            9999988876653   378899999999999999999999999999999999999 667899999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=4.7e-41  Score=361.98  Aligned_cols=250  Identities=24%  Similarity=0.364  Sum_probs=204.1

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH  281 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~  281 (728)
                      +.||+|+||.||+|++..+|+.||+|++...     .....+.+|+.++..+.|++ |+++++++...+..|+||||+.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~-i~~~~~~~~~~~~~~lv~E~~~~   79 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPF-LTALKYSFQTHDRLCFVMEYANG   79 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCC-CCceEEEEEcCCEEEEEEeCCCC
Confidence            3689999999999999999999999998743     22345678999999999998 99999999999999999999999


Q ss_pred             CChHHHhh---cCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCC
Q 004835          282 DRPEVLKK---EIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG  357 (728)
Q Consensus       282 ~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~  357 (728)
                      +.+..+..   .+++..+..++.||+.||.|||+ +||+||||||+||||+ .++.+||+|||++.......        
T Consensus        80 ~~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~-~~~~~kL~Dfg~~~~~~~~~--------  150 (325)
T cd05594          80 GELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLD-KDGHIKITDFGLCKEGIKDG--------  150 (325)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEEC-CCCCEEEecCCCCeecCCCC--------
Confidence            98866543   38899999999999999999997 7999999999999999 66789999999986310000        


Q ss_pred             CcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccc
Q 004835          358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAE  437 (728)
Q Consensus       358 t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (325)
T cd05594         151 --------------------------------------------------------------------------------  150 (325)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCch
Q 004835          438 RLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLS  517 (728)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  517 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (325)
T cd05594         151 --------------------------------------------------------------------------------  150 (325)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          518 DLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       518 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                                  ......+||+.|+|||++.+.. ++.++|||||||++|+|++|..||.+.+.
T Consensus       151 ----------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~el~tG~~Pf~~~~~  201 (325)
T cd05594         151 ----------------------------ATMKTFCGTPEYLAPEVLEDND-YGRAVDWWGLGVVMYEMMCGRLPFYNQDH  201 (325)
T ss_pred             ----------------------------cccccccCCcccCCHHHHccCC-CCCccccccccceeeeeccCCCCCCCCCH
Confidence                                        0001235899999999996554 69999999999999999999999988766


Q ss_pred             HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC
Q 004835          598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI  677 (728)
Q Consensus       598 ~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp  677 (728)
                      +.+...+.                                          .....++..+++++.+||.+||..||++|+
T Consensus       202 ~~~~~~i~------------------------------------------~~~~~~p~~~~~~~~~li~~~L~~dP~~R~  239 (325)
T cd05594         202 EKLFELIL------------------------------------------MEEIRFPRTLSPEAKSLLSGLLKKDPKQRL  239 (325)
T ss_pred             HHHHHHHh------------------------------------------cCCCCCCCCCCHHHHHHHHHHhhcCHHHhC
Confidence            54433221                                          011233456788999999999999999997


Q ss_pred             -----CHHHHhcCCCCccchhcchH
Q 004835          678 -----SAEDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       678 -----ta~e~L~Hp~f~~~~~~~~~  697 (728)
                           ++.++++||||.++.+....
T Consensus       240 ~~~~~~~~~il~h~~~~~~~~~~~~  264 (325)
T cd05594         240 GGGPDDAKEIMQHKFFAGIVWQDVY  264 (325)
T ss_pred             CCCCCCHHHHhcCCCcCCCCHHHHH
Confidence                 89999999999987655443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=1.2e-40  Score=358.32  Aligned_cols=252  Identities=25%  Similarity=0.375  Sum_probs=202.7

Q ss_pred             EecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEeccCC
Q 004835          208 EEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLEHVKH  281 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E~~~~  281 (728)
                      +||+|+||.||+|++..+++.||||++...     .....+..|..++..+ .|++ |+++++++..++..|+||||+.+
T Consensus         2 ~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~-i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           2 VLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPF-LTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             ccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCC-ccceeeEEEcCCeEEEEEeCCCC
Confidence            689999999999999999999999998743     2234466788888876 5666 99999999999999999999999


Q ss_pred             CChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCCC
Q 004835          282 DRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT  358 (728)
Q Consensus       282 ~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~t  358 (728)
                      +++.....   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++.......         
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~-~~~~~kL~Dfg~~~~~~~~~---------  150 (321)
T cd05591          81 GDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLD-AEGHCKLADFGMCKEGILNG---------  150 (321)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEEC-CCCCEEEeecccceecccCC---------
Confidence            88865543   388899999999999999999999999999999999999 66789999999986310000         


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCcccc
Q 004835          359 KYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAER  438 (728)
Q Consensus       359 ~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (321)
T cd05591         151 --------------------------------------------------------------------------------  150 (321)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCchh
Q 004835          439 LREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSD  518 (728)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  518 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (321)
T cd05591         151 --------------------------------------------------------------------------------  150 (321)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCChH
Q 004835          519 LQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ  598 (728)
Q Consensus       519 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~~  598 (728)
                                                 ......+||+.|+|||++.+.. ++.++|||||||++|+|++|+.||.+.+..
T Consensus       151 ---------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwslG~il~el~tg~~Pf~~~~~~  202 (321)
T cd05591         151 ---------------------------VTTTTFCGTPDYIAPEILQELE-YGPSVDWWALGVLMYEMMAGQPPFEADNED  202 (321)
T ss_pred             ---------------------------ccccccccCccccCHHHHcCCC-CCCccceechhHHHHHHhcCCCCCCCCCHH
Confidence                                       0001235899999999985544 699999999999999999999999887765


Q ss_pred             HHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC-
Q 004835          599 NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI-  677 (728)
Q Consensus       599 ~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp-  677 (728)
                      .+...+.                                          .....++..++.++.+||.+||..||++|+ 
T Consensus       203 ~~~~~i~------------------------------------------~~~~~~p~~~~~~~~~ll~~~L~~dp~~R~~  240 (321)
T cd05591         203 DLFESIL------------------------------------------HDDVLYPVWLSKEAVSILKAFMTKNPNKRLG  240 (321)
T ss_pred             HHHHHHH------------------------------------------cCCCCCCCCCCHHHHHHHHHHhccCHHHcCC
Confidence            4433221                                          011122334678999999999999999999 


Q ss_pred             ------CHHHHhcCCCCccchhcchHhHh
Q 004835          678 ------SAEDALKHEFFAPCHEMLRKQKL  700 (728)
Q Consensus       678 ------ta~e~L~Hp~f~~~~~~~~~~~~  700 (728)
                            +++++++||||..+.+.....+.
T Consensus       241 ~~~~~~~~~~~~~hp~~~~~~~~~~~~~~  269 (321)
T cd05591         241 CVASQGGEDAIKQHPFFKEIDWVLLEQRK  269 (321)
T ss_pred             CCCCCCCHHHHhcCCccCCCCHHHHHhCC
Confidence                  99999999999988766554433

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=6.6e-41  Score=367.97  Aligned_cols=142  Identities=25%  Similarity=0.326  Sum_probs=127.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++++.||+|+||.||+|++..+++.||||++...     .....+.+|+.++..+.|++ |+++++.|..++.+|+|
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~-iv~~~~~~~~~~~~~lv   79 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEW-VVKLYYSFQDKDNLYFV   79 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCC-cceEEEEEEcCCEEEEE
Confidence            3799999999999999999999999999999998642     23455778999999999998 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||++++.+..++.   .+++..++.++.||+.||+|||++||+||||||+|||++ .++.++|+|||+|..
T Consensus        80 ~E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~-~~~~ikL~DFG~a~~  150 (376)
T cd05598          80 MDYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILID-RDGHIKLTDFGLCTG  150 (376)
T ss_pred             EeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEEC-CCCCEEEEeCCCCcc
Confidence            99999988877653   378889999999999999999999999999999999999 667899999999863

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=2.4e-40  Score=357.68  Aligned_cols=143  Identities=27%  Similarity=0.363  Sum_probs=128.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .++|++.+.||+|+||.||+|++..+|..||+|++....   ....+.+|+.++.+++|+| |+++++++..++..++||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~   82 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPY-IVGFYGAFYSDGEISICM   82 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCC-CCeEEEEEEECCEEEEEe
Confidence            468999999999999999999999999999999987542   2356889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||++++++..+..   .+++..+..++.|++.||.|||++ +|+||||||+|||++ .++.++|+|||++..
T Consensus        83 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~-~~~~~kl~Dfg~~~~  153 (331)
T cd06649          83 EHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVN-SRGEIKLCDFGVSGQ  153 (331)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEc-CCCcEEEccCccccc
Confidence            9999998887764   388899999999999999999986 699999999999999 667799999999863

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=1.8e-40  Score=365.46  Aligned_cols=141  Identities=25%  Similarity=0.318  Sum_probs=126.9

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .|+++++||+|+||+||+|++..+++.||||++....     ....+.+|+.++..+.|++ |++++++|..++..|+||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~-iv~~~~~~~~~~~~~lv~   80 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEW-VVRLYYSFQDKDNLYFVM   80 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCc-CCeEEEEEEeCCEEEEEE
Confidence            6999999999999999999999999999999987532     2346788999999999998 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||++++.+..+..   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus        81 E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~-~~g~~kL~DFGla~~  150 (382)
T cd05625          81 DYIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILID-RDGHIKLTDFGLCTG  150 (382)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEC-CCCCEEEeECCCCcc
Confidence            9999988766553   378899999999999999999999999999999999999 667899999999863

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.1e-40  Score=361.07  Aligned_cols=282  Identities=27%  Similarity=0.409  Sum_probs=213.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeC------
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCG------  269 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~------  269 (728)
                      .++|.+.+.||.|+||.||+|.+..+++.||||++....    ....+.+|+.+++.++|+| |+++++++...      
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~~~   92 (343)
T cd07878          14 PERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHEN-VIGLLDVFTPATSIENF   92 (343)
T ss_pred             hhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCc-hhhhhhhhccccccccc
Confidence            358999999999999999999999999999999986432    2345678999999999999 99999887543      


Q ss_pred             CeeEEEEeccCCCChHHHh-hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          270 DSDCFVLEHVKHDRPEVLK-KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~-~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      ...|++++++.+.+...+. ..+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..... 
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~-~~~~~kl~Dfg~~~~~~~-  170 (343)
T cd07878          93 NEVYLVTNLMGADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVN-EDCELRILDFGLARQADD-  170 (343)
T ss_pred             CcEEEEeecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEEC-CCCCEEEcCCccceecCC-
Confidence            3579999998654433332 2489999999999999999999999999999999999999 667899999999864100 


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (343)
T cd07878         171 --------------------------------------------------------------------------------  170 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (343)
T cd07878         171 --------------------------------------------------------------------------------  170 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                            .....+||+.|+|||++.+...++.++|||||||++|+|++|
T Consensus       171 --------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g  212 (343)
T cd07878         171 --------------------------------------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKG  212 (343)
T ss_pred             --------------------------------------CcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHC
Confidence                                                  001235899999999997766679999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHH
Q 004835          589 RTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK  667 (728)
Q Consensus       589 ~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~  667 (728)
                      ..||.+... +.+..+.+..|.+.......+.....   ..  ....++......+.       ......++.+.+||.+
T Consensus       213 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~li~~  280 (343)
T cd07878         213 KALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHA---RK--YIQSLPHMPQQDLK-------KIFRGANPLAIDLLEK  280 (343)
T ss_pred             CCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhH---HH--HhhccccccchhHH-------HhccCCCHHHHHHHHH
Confidence            999987654 56777777777644322221111000   00  00011111111111       1123466789999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          668 CLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       668 ~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      ||.+||.+|||+.|+|+||||......
T Consensus       281 mL~~dp~~R~s~~ell~hp~~~~~~~~  307 (343)
T cd07878         281 MLVLDSDKRISASEALAHPYFSQYHDP  307 (343)
T ss_pred             HcCCChhhCCCHHHHhcCcchhccCCC
Confidence            999999999999999999999986543

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=1.1e-40  Score=363.52  Aligned_cols=146  Identities=25%  Similarity=0.359  Sum_probs=128.3

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ....+++|++++.||+|+||.||+|++..+|+.||||++.....   ...+.+|+.+++.++|+| |+++++++..++..
T Consensus        69 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~  147 (353)
T PLN00034         69 AAKSLSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPN-VVKCHDMFDHNGEI  147 (353)
T ss_pred             CCCCHHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCC-cceeeeEeccCCeE
Confidence            33456789999999999999999999999999999999865432   356789999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||+.++++... ....+..+..++.||+.||.|||++||+||||||+||||+ +++.+||+|||++..
T Consensus       148 ~lv~e~~~~~~L~~~-~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~-~~~~~kL~DfG~~~~  217 (353)
T PLN00034        148 QVLLEFMDGGSLEGT-HIADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLLIN-SAKNVKIADFGVSRI  217 (353)
T ss_pred             EEEEecCCCCccccc-ccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEc-CCCCEEEccccccee
Confidence            999999999887542 2356778889999999999999999999999999999999 667899999999874

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=2.3e-40  Score=364.41  Aligned_cols=144  Identities=24%  Similarity=0.304  Sum_probs=129.1

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..++|++.+.||+|+||.||+|++..+++.||+|++...     .....+.+|+.+++.++|++ |+++++++..+...|
T Consensus        41 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~-iv~~~~~~~~~~~~~  119 (370)
T cd05621          41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW-VVQLFCAFQDDKYLY  119 (370)
T ss_pred             CHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCC-EeeEEEEEEcCCEEE
Confidence            346899999999999999999999999999999998642     22345778999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||++++.+..+..  .+++..++.++.||+.||+|||++||+||||||+|||++ ..+.+||+|||+|..
T Consensus       120 lv~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~-~~~~~kL~DFG~a~~  191 (370)
T cd05621         120 MVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLD-KHGHLKLADFGTCMK  191 (370)
T ss_pred             EEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEC-CCCCEEEEeccccee
Confidence            9999999998877664  378889999999999999999999999999999999999 667899999999874

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=1.9e-40  Score=356.40  Aligned_cols=248  Identities=24%  Similarity=0.379  Sum_probs=200.1

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +.||+|+||.||+|++..+|+.||+|++...     ........|..++..+ .|++ |+++++++...+..|+||||+.
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~-i~~~~~~~~~~~~~~lv~E~~~   79 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPF-LTHLYCTFQTKEHLFFVMEFLN   79 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCC-ccCeeEEEEeCCEEEEEECCCC
Confidence            3699999999999999999999999998743     2334466788888765 6766 9999999999999999999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCC
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG  357 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~  357 (728)
                      ++.+..+..   .+++..+..++.||+.||+|||++||+||||||+|||++ .++.++|+|||+++......        
T Consensus        80 ~g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~~--------  150 (316)
T cd05620          80 GGDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLD-RDGHIKIADFGMCKENVFGD--------  150 (316)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEC-CCCCEEeCccCCCeecccCC--------
Confidence            988765543   488999999999999999999999999999999999999 66689999999986310000        


Q ss_pred             CcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccc
Q 004835          358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAE  437 (728)
Q Consensus       358 t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (316)
T cd05620         151 --------------------------------------------------------------------------------  150 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCch
Q 004835          438 RLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLS  517 (728)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  517 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (316)
T cd05620         151 --------------------------------------------------------------------------------  150 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          518 DLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       518 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                                  ......+||+.|+|||++.+.. ++.++|||||||++|+|++|..||.+.+.
T Consensus       151 ----------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslGvil~el~~g~~Pf~~~~~  201 (316)
T cd05620         151 ----------------------------NRASTFCGTPDYIAPEILQGLK-YTFSVDWWSFGVLLYEMLIGQSPFHGDDE  201 (316)
T ss_pred             ----------------------------CceeccCCCcCccCHHHHcCCC-CCcccchhhhHHHHHHHHhCCCCCCCCCH
Confidence                                        0011345899999999996554 69999999999999999999999988776


Q ss_pred             HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC
Q 004835          598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI  677 (728)
Q Consensus       598 ~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp  677 (728)
                      ..+.+.+..                                          ..+.++..++.++.+||.+||..||++|+
T Consensus       202 ~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~li~~~l~~dP~~R~  239 (316)
T cd05620         202 DELFESIRV------------------------------------------DTPHYPRWITKESKDILEKLFERDPTRRL  239 (316)
T ss_pred             HHHHHHHHh------------------------------------------CCCCCCCCCCHHHHHHHHHHccCCHHHcC
Confidence            555443321                                          11222334678999999999999999999


Q ss_pred             CH-HHHhcCCCCccchhcc
Q 004835          678 SA-EDALKHEFFAPCHEML  695 (728)
Q Consensus       678 ta-~e~L~Hp~f~~~~~~~  695 (728)
                      ++ +++++||||+.+....
T Consensus       240 ~~~~~~~~h~~f~~~~~~~  258 (316)
T cd05620         240 GVVGNIRGHPFFKTINWTA  258 (316)
T ss_pred             CChHHHHcCCCcCCCCHHH
Confidence            97 5888999999886553

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=2.7e-40  Score=361.23  Aligned_cols=142  Identities=23%  Similarity=0.316  Sum_probs=127.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||.||+|++..+++.||||++...     .....+.+|+.++..+.|++ |+++++++...+..|+|
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-iv~~~~~~~~~~~~~lv   79 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAW-VVKMFYSFQDKRNLYLI   79 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCC-EeeEEEEEEcCCEEEEE
Confidence            4799999999999999999999999999999998642     23456778999999999998 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||++++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.++|+|||++..
T Consensus        80 ~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~-~~~~vkL~DfG~~~~  150 (360)
T cd05627          80 MEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLD-AKGHVKLSDFGLCTG  150 (360)
T ss_pred             EeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEEC-CCCCEEEeeccCCcc
Confidence            99999988876653   388999999999999999999999999999999999998 667899999999875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.9e-40  Score=356.41  Aligned_cols=255  Identities=25%  Similarity=0.383  Sum_probs=205.8

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +.||+|+||+||+|++..+++.||||++...     .....+.+|+.++..+ .|++ |+++++++...+..|+||||+.
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~-i~~~~~~~~~~~~~~lv~e~~~   79 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPF-LTQLHSCFQTKDRLFFVMEYVN   79 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCC-ccceeeEEEcCCEEEEEEcCCC
Confidence            3699999999999999999999999998743     2334567888999888 4766 9999999999999999999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCC
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG  357 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~  357 (728)
                      ++++.....   .+++..+..++.||+.||+|||++||+||||||+|||++ .++.++|+|||++.......        
T Consensus        80 ~~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~-~~~~~kl~Dfg~~~~~~~~~--------  150 (318)
T cd05570          80 GGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLD-SEGHIKIADFGMCKEGILGG--------  150 (318)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEEC-CCCcEEecccCCCeecCcCC--------
Confidence            998866543   489999999999999999999999999999999999999 66789999999986310000        


Q ss_pred             CcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccc
Q 004835          358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAE  437 (728)
Q Consensus       358 t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (318)
T cd05570         151 --------------------------------------------------------------------------------  150 (318)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCch
Q 004835          438 RLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLS  517 (728)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  517 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (318)
T cd05570         151 --------------------------------------------------------------------------------  150 (318)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          518 DLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       518 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                                  ......+||+.|+|||++.+.. ++.++|||||||++|+|++|..||.+.+.
T Consensus       151 ----------------------------~~~~~~~g~~~y~aPE~~~~~~-~~~~~DiwslGvil~~l~~G~~pf~~~~~  201 (318)
T cd05570         151 ----------------------------VTTSTFCGTPDYIAPEILSYQP-YGPAVDWWALGVLLYEMLAGQSPFEGDDE  201 (318)
T ss_pred             ----------------------------CcccceecCccccCHHHhcCCC-CCcchhhhhHHHHHHHHhhCCCCCCCCCH
Confidence                                        0001235899999999996554 68999999999999999999999987765


Q ss_pred             HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC
Q 004835          598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI  677 (728)
Q Consensus       598 ~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp  677 (728)
                      ..+...+.                                          .....++..++..+.+||.+||..||.+||
T Consensus       202 ~~~~~~i~------------------------------------------~~~~~~~~~~~~~~~~li~~~l~~dP~~R~  239 (318)
T cd05570         202 DELFQSIL------------------------------------------EDEVRYPRWLSKEAKSILKSFLTKNPEKRL  239 (318)
T ss_pred             HHHHHHHH------------------------------------------cCCCCCCCcCCHHHHHHHHHHccCCHHHcC
Confidence            54433221                                          011223345788999999999999999999


Q ss_pred             CH-----HHHhcCCCCccchhcchHhHhhh
Q 004835          678 SA-----EDALKHEFFAPCHEMLRKQKLLR  702 (728)
Q Consensus       678 ta-----~e~L~Hp~f~~~~~~~~~~~~~~  702 (728)
                      |+     .++++||||+.+.+....++.+.
T Consensus       240 s~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  269 (318)
T cd05570         240 GCLPTGEQDIKGHPFFREIDWDKLERKEIK  269 (318)
T ss_pred             CCCCCCHHHHhcCCCcCCCCHHHHHhCCCC
Confidence            99     99999999999877655544443

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-41  Score=362.36  Aligned_cols=272  Identities=24%  Similarity=0.331  Sum_probs=230.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      .+.|...++||+|+||.||-++-+.||+.||.|++.+..     ......+|-.||++++.+. ||.+-..|++.+.+|+
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~F-iVslaYAfeTkd~LCl  262 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPF-IVSLAYAFETKDALCL  262 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCc-EEEEeeeecCCCceEE
Confidence            467899999999999999999999999999999876432     2344678999999998875 9999999999999999


Q ss_pred             EEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          275 VLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       275 V~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      ||..|.||.+...+-     .+++..+.+|+.+|+.||.+||+.+||+|||||+|||+| +.++++|+|+|+|.....+ 
T Consensus       263 VLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLD-d~GhvRISDLGLAvei~~g-  340 (591)
T KOG0986|consen  263 VLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLD-DHGHVRISDLGLAVEIPEG-  340 (591)
T ss_pred             EEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeec-cCCCeEeeccceEEecCCC-
Confidence            999999999876542     389999999999999999999999999999999999999 8888999999999753211 


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       341 --------------------------------------------------------------------------------  340 (591)
T KOG0986|consen  341 --------------------------------------------------------------------------------  340 (591)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       341 --------------------------------------------------------------------------------  340 (591)
T KOG0986|consen  341 --------------------------------------------------------------------------------  340 (591)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                          +.....+||.+|||||++.+.. |+..+|||||||+||||+.|+
T Consensus       341 ------------------------------------~~~~~rvGT~GYMAPEvl~ne~-Y~~s~Dwf~lGCllYemi~G~  383 (591)
T KOG0986|consen  341 ------------------------------------KPIRGRVGTVGYMAPEVLQNEV-YDFSPDWFSLGCLLYEMIAGH  383 (591)
T ss_pred             ------------------------------------CccccccCcccccCHHHHcCCc-ccCCccHHHHHhHHHHHHccc
Confidence                                                1112448999999999995555 899999999999999999999


Q ss_pred             CCCCCCChH----HHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHH
Q 004835          590 TPFFGDPEQ----NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLV  665 (728)
Q Consensus       590 ~PF~~~~~~----~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi  665 (728)
                      .||......    .+.+                                          .+.....++++.+++++++|+
T Consensus       384 sPFr~~KeKvk~eEvdr------------------------------------------r~~~~~~ey~~kFS~eakslc  421 (591)
T KOG0986|consen  384 SPFRQRKEKVKREEVDR------------------------------------------RTLEDPEEYSDKFSEEAKSLC  421 (591)
T ss_pred             CchhhhhhhhhHHHHHH------------------------------------------HHhcchhhcccccCHHHHHHH
Confidence            999654321    2211                                          122334567788999999999


Q ss_pred             HHhcccCCCCCCC-----HHHHhcCCCCccchhcchHhHhhhcccccCCCCCC
Q 004835          666 DKCLTVNPRLRIS-----AEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTTGN  713 (728)
Q Consensus       666 ~~~L~~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~  713 (728)
                      +.+|+.||++|..     ++++.+||||+++++.-....|+.+.+.+|.....
T Consensus       422 ~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~lnw~rleagml~PPfiPdp~aVy  474 (591)
T KOG0986|consen  422 EGLLTKDPEKRLGCRGEGAQEVKEHPFFKDLNWRRLEAGMLEPPFIPDPGAVY  474 (591)
T ss_pred             HHHHccCHHHhccCCCcCcchhhhCcccccCCHhHHhccCCCCCCCCCccccc
Confidence            9999999999985     88999999999999999999999999988876543

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-40  Score=362.19  Aligned_cols=251  Identities=28%  Similarity=0.386  Sum_probs=206.7

Q ss_pred             ccCCCCCCeeEEEEecccCceEEEEEEEcCCCeE-EEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeC
Q 004835          195 KVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTV-VAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       195 ~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~-VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      ....+.+.+.+.+.||.|+||+||+|.++  |+. ||||++....    ....|.+|+.+|.+++||| |+++++++..+
T Consensus        35 ~~~i~~~~l~~~~~iG~G~~g~V~~~~~~--g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpN-IV~f~G~~~~~  111 (362)
T KOG0192|consen   35 EEEIDPDELPIEEVLGSGSFGTVYKGKWR--GTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPN-IVQFYGACTSP  111 (362)
T ss_pred             ceecChHHhhhhhhcccCCceeEEEEEeC--CceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCC-eeeEEEEEcCC
Confidence            34445667778888999999999999995  666 9999987532    1457899999999999999 99999999988


Q ss_pred             C-eeEEEEeccCCCChHHHh-----hcCChHHHHHHHHHHHHHHHHHHhCC-cEeccCCCCceEeecCCCceEEEeeecc
Q 004835          270 D-SDCFVLEHVKHDRPEVLK-----KEIDLSQLQWYGYCLFRALASLHKQG-IVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       270 ~-~~~LV~E~~~~~~l~~l~-----~~l~~~~~~~i~~QIl~aL~yLHs~g-IIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                      . .+++||||+++|++..+.     ..+++..+..++.||++|+.|||+++ ||||||||+|||++.+..++||+|||++
T Consensus       112 ~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGls  191 (362)
T KOG0192|consen  112 PGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLS  191 (362)
T ss_pred             CCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccc
Confidence            7 799999999999998876     24899999999999999999999999 9999999999999943348999999999


Q ss_pred             ccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCC
Q 004835          343 MVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSG  422 (728)
Q Consensus       343 ~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~  422 (728)
                      +......                                                                         
T Consensus       192 r~~~~~~-------------------------------------------------------------------------  198 (362)
T KOG0192|consen  192 REKVISK-------------------------------------------------------------------------  198 (362)
T ss_pred             eeecccc-------------------------------------------------------------------------
Confidence            8521000                                                                         


Q ss_pred             ccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcc
Q 004835          423 ITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIA  502 (728)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (728)
                                                                                                      
T Consensus       199 --------------------------------------------------------------------------------  198 (362)
T KOG0192|consen  199 --------------------------------------------------------------------------------  198 (362)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhc-cCCCCCchhHHHHHHH
Q 004835          503 VAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFR-SQHQGPKLDIWSAGVT  581 (728)
Q Consensus       503 ~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~-~~~~~~~~DIWSlG~i  581 (728)
                                                                 ...+...||+.|||||++.+ ...|+.|+||||||++
T Consensus       199 -------------------------------------------~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIv  235 (362)
T KOG0192|consen  199 -------------------------------------------TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIV  235 (362)
T ss_pred             -------------------------------------------ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHH
Confidence                                                       00112469999999999964 4568999999999999


Q ss_pred             HHHHhcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhH
Q 004835          582 LLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL  661 (728)
Q Consensus       582 l~eLltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  661 (728)
                      +|||+||+.||.+....++...+-.                                        ...++.++..+++.+
T Consensus       236 lWEl~t~~~Pf~~~~~~~~~~~v~~----------------------------------------~~~Rp~~p~~~~~~l  275 (362)
T KOG0192|consen  236 LWELLTGEIPFEDLAPVQVASAVVV----------------------------------------GGLRPPIPKECPPHL  275 (362)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHh----------------------------------------cCCCCCCCccCCHHH
Confidence            9999999999998776444333321                                        123566667789999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhc
Q 004835          662 FDLVDKCLTVNPRLRISAEDALK  684 (728)
Q Consensus       662 ~dLi~~~L~~dP~~Rpta~e~L~  684 (728)
                      ..||.+||..||.+||+..+++.
T Consensus       276 ~~l~~~CW~~dp~~RP~f~ei~~  298 (362)
T KOG0192|consen  276 SSLMERCWLVDPSRRPSFLEIVS  298 (362)
T ss_pred             HHHHHHhCCCCCCcCCCHHHHHH
Confidence            99999999999999999998864

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=3.1e-40  Score=355.02  Aligned_cols=252  Identities=24%  Similarity=0.382  Sum_probs=202.4

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +.||+|+||+||+|++..+++.||||++...     ........|..++..+ .|++ |+++++++.+.+..|+||||++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~-iv~~~~~~~~~~~~~lv~ey~~   79 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPF-LTHLYCTFQTKENLFFVMEYLN   79 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCc-CcceEEEEEeCCEEEEEEeCCC
Confidence            3689999999999999999999999998753     2234456788888764 7777 9999999999999999999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCC
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG  357 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~  357 (728)
                      ++++..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++.......        
T Consensus        80 ~g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~-~~~~~kl~Dfg~~~~~~~~~--------  150 (316)
T cd05619          80 GGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLD-TDGHIKIADFGMCKENMLGD--------  150 (316)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEEC-CCCCEEEccCCcceECCCCC--------
Confidence            988876653   388999999999999999999999999999999999999 66679999999986310000        


Q ss_pred             CcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccc
Q 004835          358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAE  437 (728)
Q Consensus       358 t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (316)
T cd05619         151 --------------------------------------------------------------------------------  150 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCch
Q 004835          438 RLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLS  517 (728)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  517 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (316)
T cd05619         151 --------------------------------------------------------------------------------  150 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          518 DLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       518 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                                  ......+||+.|+|||++.+.. ++.++||||+||++|+|++|..||.+.+.
T Consensus       151 ----------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwslG~il~el~~G~~pf~~~~~  201 (316)
T cd05619         151 ----------------------------AKTCTFCGTPDYIAPEILLGQK-YNTSVDWWSFGVLLYEMLIGQSPFHGHDE  201 (316)
T ss_pred             ----------------------------CceeeecCCccccCHHHHcCCC-CCchhhhhhHHHHHHHHHhCCCCCCCCCH
Confidence                                        0001335899999999996554 69999999999999999999999988766


Q ss_pred             HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC
Q 004835          598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI  677 (728)
Q Consensus       598 ~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp  677 (728)
                      ..+.+.+..                                          ..+.++..++.++.+||.+||..||.+||
T Consensus       202 ~~~~~~i~~------------------------------------------~~~~~~~~~~~~~~~li~~~l~~~P~~R~  239 (316)
T cd05619         202 EELFQSIRM------------------------------------------DNPCYPRWLTREAKDILVKLFVREPERRL  239 (316)
T ss_pred             HHHHHHHHh------------------------------------------CCCCCCccCCHHHHHHHHHHhccCHhhcC
Confidence            554433321                                          01122234678899999999999999999


Q ss_pred             CHH-HHhcCCCCccchhcchHhH
Q 004835          678 SAE-DALKHEFFAPCHEMLRKQK  699 (728)
Q Consensus       678 ta~-e~L~Hp~f~~~~~~~~~~~  699 (728)
                      ++. ++++||||+.+.+......
T Consensus       240 ~~~~~l~~h~~~~~~~~~~~~~~  262 (316)
T cd05619         240 GVKGDIRQHPFFREIDWSALEER  262 (316)
T ss_pred             CChHHHHcCcccCCCCHHHHHhC
Confidence            996 8999999999876544433

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=3.3e-40  Score=347.49  Aligned_cols=134  Identities=22%  Similarity=0.318  Sum_probs=118.2

Q ss_pred             ecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCC
Q 004835          209 EGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       209 LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~  283 (728)
                      ||+|+||+||+|.+..+|+.||+|++....     ....+..|+.+++.++|++ |+++.+++......|+||||++++.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~-i~~~~~~~~~~~~~~lv~e~~~~g~   79 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRF-IVSLAYAFQTKTDLCLVMTIMNGGD   79 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCc-EeeeeEEEcCCCeEEEEEeCCCCCC
Confidence            699999999999999999999999986432     1244678999999999988 9999999999999999999999998


Q ss_pred             hHHHh-------hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          284 PEVLK-------KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       284 l~~l~-------~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +..+.       ..+++..++.++.||+.||.|||++||+||||||+|||++ +++.++|+|||++..
T Consensus        80 L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~-~~~~~~l~dfg~~~~  146 (280)
T cd05608          80 LRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLD-NDGNVRISDLGLAVE  146 (280)
T ss_pred             HHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEC-CCCCEEEeeCcccee
Confidence            86543       1378899999999999999999999999999999999998 667799999999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=3.1e-40  Score=356.76  Aligned_cols=135  Identities=22%  Similarity=0.332  Sum_probs=119.3

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      ++||+|+||.||+|++..+++.||||++...     .....+.+|..++..+ +|++ |++++++|......|+||||++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~-Iv~~~~~~~~~~~~~lv~e~~~   79 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPF-LVGLHSCFQTESRLFFVIEFVS   79 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCC-CCceEEEEEcCCEEEEEEeCCC
Confidence            3689999999999999999999999998743     2234577899999998 5777 9999999999999999999999


Q ss_pred             CCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          281 HDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       281 ~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      ++.+..+.   +.+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||+++
T Consensus        80 ~g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~-~~~~~kL~Dfg~~~  144 (329)
T cd05588          80 GGDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVLLD-AEGHIKLTDYGMCK  144 (329)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEC-CCCCEEECcCcccc
Confidence            98886554   2489999999999999999999999999999999999999 66789999999986

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=3.5e-40  Score=354.35  Aligned_cols=250  Identities=26%  Similarity=0.377  Sum_probs=200.3

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +.||+|+||.||+|++..+++.||||+++..     .....+..|..++..+ .|++ |+++++++..++..|+||||++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~-i~~~~~~~~~~~~~~lv~e~~~   79 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPF-LTHLFCTFQTKEHLFFVMEYLN   79 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCC-ccceeeEEEcCCEEEEEEcCCC
Confidence            3699999999999999999999999998743     2233455677777654 6777 9999999999999999999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCC
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG  357 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~  357 (728)
                      ++++..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++.......        
T Consensus        80 gg~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~-~~~~~kL~Dfg~a~~~~~~~--------  150 (316)
T cd05592          80 GGDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLD-KDGHIKIADFGMCKENMNGE--------  150 (316)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEEC-CCCCEEEccCcCCeECCCCC--------
Confidence            988876553   488999999999999999999999999999999999999 66789999999986410000        


Q ss_pred             CcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccc
Q 004835          358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAE  437 (728)
Q Consensus       358 t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (316)
T cd05592         151 --------------------------------------------------------------------------------  150 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCch
Q 004835          438 RLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLS  517 (728)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  517 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (316)
T cd05592         151 --------------------------------------------------------------------------------  150 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          518 DLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       518 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                                  ......+||+.|+|||++.+.. ++.++|||||||++|+|++|..||.+.+.
T Consensus       151 ----------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwslG~il~ell~G~~Pf~~~~~  201 (316)
T cd05592         151 ----------------------------GKASTFCGTPDYIAPEILKGQK-YNESVDWWSFGVLLYEMLIGQSPFHGEDE  201 (316)
T ss_pred             ----------------------------CccccccCCccccCHHHHcCCC-CCCcccchhHHHHHHHHHhCCCCCCCCCH
Confidence                                        0011346899999999996554 69999999999999999999999988776


Q ss_pred             HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC
Q 004835          598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI  677 (728)
Q Consensus       598 ~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp  677 (728)
                      ..+...+.                                          ...+.++..++.++.+||.+||..||.+||
T Consensus       202 ~~~~~~i~------------------------------------------~~~~~~~~~~~~~~~~ll~~~l~~~P~~R~  239 (316)
T cd05592         202 DELFDSIL------------------------------------------NDRPHFPRWISKEAKDCLSKLFERDPTKRL  239 (316)
T ss_pred             HHHHHHHH------------------------------------------cCCCCCCCCCCHHHHHHHHHHccCCHHHcC
Confidence            54433221                                          011223345778999999999999999999


Q ss_pred             CH-HHHhcCCCCccchhcchH
Q 004835          678 SA-EDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       678 ta-~e~L~Hp~f~~~~~~~~~  697 (728)
                      ++ .++++||||..+.+....
T Consensus       240 ~~~~~l~~h~~~~~~~~~~~~  260 (316)
T cd05592         240 GVDGDIRQHPFFRGIDWERLE  260 (316)
T ss_pred             CChHHHHcCcccCCCCHHHHH
Confidence            86 588899999988765443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=2.3e-40  Score=356.88  Aligned_cols=142  Identities=27%  Similarity=0.339  Sum_probs=127.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|.+.+.||+|+||+||+|++..+|+.||||++....     ....+.+|+.++..+.|++ |+++++++...+..|+|
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~-i~~~~~~~~~~~~~~lv   79 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPW-IPQLQYAFQDKDNLYLV   79 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCC-CcceeeEEecCCeEEEE
Confidence            47999999999999999999999999999999987432     2345778999999999998 99999999999999999


Q ss_pred             EeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||++++.+..+..    .+++..++.++.||+.||.|||++||+||||||+|||++ ..+.+||+|||++..
T Consensus        80 ~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~-~~~~~kL~Dfg~a~~  151 (330)
T cd05601          80 MEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLID-RTGHIKLADFGSAAR  151 (330)
T ss_pred             ECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEEC-CCCCEEeccCCCCeE
Confidence            99999988877653    378999999999999999999999999999999999999 667899999999864

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=2.4e-40  Score=357.86  Aligned_cols=136  Identities=23%  Similarity=0.339  Sum_probs=119.1

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +.||+|+||.||+|++..+++.||+|++...     .....+.+|+.++.++ +|++ |+++++++...+..|+||||+.
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~-iv~~~~~~~~~~~~~lv~E~~~   79 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPF-LVGLHSCFQTESRLFFVIEYVN   79 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCc-CCceeeEEEeCCEEEEEEeCCC
Confidence            3699999999999999999999999998743     1234567888888877 6777 9999999999999999999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++.+.....   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||+++.
T Consensus        80 ~~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~-~~~~~kL~DfG~~~~  145 (329)
T cd05618          80 GGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLD-SEGHIKLTDYGMCKE  145 (329)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEC-CCCCEEEeeCCcccc
Confidence            998866542   488999999999999999999999999999999999999 667899999999863

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4.2e-40  Score=360.02  Aligned_cols=138  Identities=23%  Similarity=0.320  Sum_probs=123.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      .+|.+.+.||+|+||.||+|++..+++.||+|+.....    ...|+.++++++|+| |+++++++..+...|+||||+.
T Consensus        66 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~----~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~e~~~  140 (357)
T PHA03209         66 LGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGT----TLIEAMLLQNVNHPS-VIRMKDTLVSGAITCMVLPHYS  140 (357)
T ss_pred             cCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCccc----cHHHHHHHHhCCCCC-CcChhheEEeCCeeEEEEEccC
Confidence            47999999999999999999999899999999854432    346999999999999 9999999999999999999998


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +++...+..   .+++..++.|+.||+.||.|||++|||||||||+|||++ ..+.++|+|||++..
T Consensus       141 ~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~-~~~~~kl~DfG~a~~  206 (357)
T PHA03209        141 SDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFIN-DVDQVCIGDLGAAQF  206 (357)
T ss_pred             CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEC-CCCCEEEecCccccc
Confidence            877766643   388999999999999999999999999999999999998 666799999999864

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=4.6e-40  Score=354.25  Aligned_cols=136  Identities=26%  Similarity=0.354  Sum_probs=118.7

Q ss_pred             EEecccCceEEEEEEEc---CCCeEEEEEeccCc------CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          207 EEEGSGGYGTVYRARRK---NDGTVVAIKCPHAN------ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~---~~g~~VAIK~i~~~------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +.||+|+||.||+|+..   .+++.||||++...      .....+.+|+.+++.++|+| |++++++|..++..|+|||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~-iv~~~~~~~~~~~~~lv~e   80 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPF-IVDLIYAFQTGGKLYLILE   80 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCc-hhceeeEEecCCeEEEEEe
Confidence            57999999999999874   46889999998642      22345678999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.++.+.....   .+.+..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||+++.
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~-~~~~~kl~Dfg~~~~  149 (323)
T cd05584          81 YLSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENILLD-AQGHVKLTDFGLCKE  149 (323)
T ss_pred             CCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEC-CCCCEEEeeCcCCee
Confidence            999988866653   277888999999999999999999999999999999998 667899999999863

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=8.1e-40  Score=343.12  Aligned_cols=275  Identities=26%  Similarity=0.382  Sum_probs=211.7

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +|++.+.||+|+||.||+|++..+|+.||+|.+....    ....+.+|+.++++++|++ |+++++++......|+|+|
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e   79 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN-IVRLYDVLHSDKKLTLVFE   79 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCC-eeeHHHHhccCCceEEEEe
Confidence            5899999999999999999999999999999986432    2345678999999999998 9999999999999999999


Q ss_pred             ccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcccc
Q 004835          278 HVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQAT  354 (728)
Q Consensus       278 ~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~  354 (728)
                      |+.++++..+..   .+++..++.++.||+.||.|||++||+||||||+||+++ .++.++|+|||++.......     
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~-~~~~~~l~dfg~~~~~~~~~-----  153 (284)
T cd07839          80 YCDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLIN-KNGELKLADFGLARAFGIPV-----  153 (284)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEc-CCCcEEECccchhhccCCCC-----
Confidence            999876665543   388999999999999999999999999999999999999 66789999999986310000     


Q ss_pred             CCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCC
Q 004835          355 LPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRT  434 (728)
Q Consensus       355 ~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (728)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (284)
T cd07839         154 --------------------------------------------------------------------------------  153 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCC
Q 004835          435 PAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPS  514 (728)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (728)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (284)
T cd07839         154 --------------------------------------------------------------------------------  153 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 004835          515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG  594 (728)
Q Consensus       515 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~  594 (728)
                                                     .......+|..|+|||++.+...++.++|||||||++|+|++|..||..
T Consensus       154 -------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~  202 (284)
T cd07839         154 -------------------------------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFP  202 (284)
T ss_pred             -------------------------------CCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcC
Confidence                                           0001234688899999997766678999999999999999999988654


Q ss_pred             -CC-hHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          595 -DP-EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       595 -~~-~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                       .+ ...+..+++.+|.+..+......... .+..    ....  .....|.       .....++..+.+||.+||..|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~--~~~~~~~-------~~~~~~~~~~~~li~~~l~~~  268 (284)
T cd07839         203 GNDVDDQLKRIFRLLGTPTEESWPGVSKLP-DYKP----YPMY--PATTSLV-------NVVPKLNSTGRDLLQNLLVCN  268 (284)
T ss_pred             CCCHHHHHHHHHHHhCCCChHHhHHhhhcc-cccc----cCCC--CCcchhh-------hhcccCCHHHHHHHHHHhcCC
Confidence             33 35677777777765443332221110 0100    0000  0011121       122457889999999999999


Q ss_pred             CCCCCCHHHHhcCCCC
Q 004835          673 PRLRISAEDALKHEFF  688 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f  688 (728)
                      |.+|||++++|+||||
T Consensus       269 P~~R~t~~~il~h~~f  284 (284)
T cd07839         269 PVQRISAEEALQHPYF  284 (284)
T ss_pred             hhhcCCHHHHhcCCCC
Confidence            9999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.1e-41  Score=337.21  Aligned_cols=249  Identities=23%  Similarity=0.368  Sum_probs=213.6

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|++++.||+|.||.||+|+.+.++..||+|++.+.     ....++.+|++|-+.|+||| |+++|++|.+....|
T Consensus        20 ~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpn-ilrlY~~fhd~~riy   98 (281)
T KOG0580|consen   20 TLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPN-ILRLYGYFHDSKRIY   98 (281)
T ss_pred             chhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCcc-HHhhhhheeccceeE
Confidence            467999999999999999999999999999999998753     34567899999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          274 FVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      |++||...|.+...+.     ++++..+..|+.|++.||.|+|.++||||||||+|+|++ ..+.+||+|||.+....  
T Consensus        99 LilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg-~~~~lkiAdfGwsV~~p--  175 (281)
T KOG0580|consen   99 LILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLG-SAGELKIADFGWSVHAP--  175 (281)
T ss_pred             EEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccC-CCCCeeccCCCceeecC--
Confidence            9999999887654433     488999999999999999999999999999999999999 55579999999986411  


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (281)
T KOG0580|consen  176 --------------------------------------------------------------------------------  175 (281)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (281)
T KOG0580|consen  176 --------------------------------------------------------------------------------  175 (281)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                          ..+....+||..|.+||+..+.. ++..+|+|++|++.||++.|
T Consensus       176 ------------------------------------~~kR~tlcgt~dyl~pEmv~~~~-hd~~Vd~w~lgvl~yeflvg  218 (281)
T KOG0580|consen  176 ------------------------------------SNKRKTLCGTLDYLPPEMVEGRG-HDKFVDLWSLGVLCYEFLVG  218 (281)
T ss_pred             ------------------------------------CCCceeeecccccCCHhhcCCCC-ccchhhHHHHHHHHHHHHhc
Confidence                                                01123567999999999996666 49999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          589 RTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       589 ~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      .+||.........+                                          ++...+..++..++..+.|||.+|
T Consensus       219 ~ppFes~~~~etYk------------------------------------------rI~k~~~~~p~~is~~a~dlI~~l  256 (281)
T KOG0580|consen  219 LPPFESQSHSETYK------------------------------------------RIRKVDLKFPSTISGGAADLISRL  256 (281)
T ss_pred             CCchhhhhhHHHHH------------------------------------------HHHHccccCCcccChhHHHHHHHH
Confidence            99998766543332                                          222334456678999999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCcc
Q 004835          669 LTVNPRLRISAEDALKHEFFAP  690 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f~~  690 (728)
                      |..+|.+|.+..|++.|||...
T Consensus       257 l~~~p~~r~~l~~v~~hpwI~a  278 (281)
T KOG0580|consen  257 LVKNPIERLALTEVMDHPWIVA  278 (281)
T ss_pred             hccCccccccHHHHhhhHHHHh
Confidence            9999999999999999999864

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=4.2e-40  Score=354.29  Aligned_cols=251  Identities=25%  Similarity=0.347  Sum_probs=199.8

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHH-HHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELR-MLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~-iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +.||+|+||+||+|++..+|+.||||++....     ....+..|.. +++.++|++ |+++++++...+..|+||||+.
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~-iv~~~~~~~~~~~~~lv~e~~~   79 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPF-LVGLHYSFQTADKLYFVLDYVN   79 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCC-CCCeeEEEEeCCEEEEEEcCCC
Confidence            36899999999999999999999999986431     2233445544 567899998 9999999999999999999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCC
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG  357 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~  357 (728)
                      ++.+..+..   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++......         
T Consensus        80 ~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~-~~~~~kl~Dfg~~~~~~~~---------  149 (323)
T cd05575          80 GGELFFHLQRERSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENILLD-SQGHVVLTDFGLCKEGIEH---------  149 (323)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEEC-CCCcEEEeccCCCcccccC---------
Confidence            998866543   388899999999999999999999999999999999999 6678999999998631000         


Q ss_pred             CcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccc
Q 004835          358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAE  437 (728)
Q Consensus       358 t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (728)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (323)
T cd05575         150 --------------------------------------------------------------------------------  149 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCch
Q 004835          438 RLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLS  517 (728)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  517 (728)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (323)
T cd05575         150 --------------------------------------------------------------------------------  149 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          518 DLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       518 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                                 .......+||+.|+|||++.+.. ++.++|||||||++|+|++|..||.+.+.
T Consensus       150 ---------------------------~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwslG~il~ell~g~~pf~~~~~  201 (323)
T cd05575         150 ---------------------------SKTTSTFCGTPEYLAPEVLRKQP-YDRTVDWWCLGAVLYEMLYGLPPFYSRDT  201 (323)
T ss_pred             ---------------------------CCccccccCChhhcChhhhcCCC-CCccccccccchhhhhhhcCCCCCCCCCH
Confidence                                       00011345899999999986554 69999999999999999999999988765


Q ss_pred             HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC
Q 004835          598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI  677 (728)
Q Consensus       598 ~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp  677 (728)
                      ..+...+.                                          .....+...++..+.+||.+||..||.+||
T Consensus       202 ~~~~~~i~------------------------------------------~~~~~~~~~~~~~~~~li~~~l~~~p~~R~  239 (323)
T cd05575         202 AEMYDNIL------------------------------------------NKPLRLKPNISVSARHLLEGLLQKDRTKRL  239 (323)
T ss_pred             HHHHHHHH------------------------------------------cCCCCCCCCCCHHHHHHHHHHhhcCHHhCC
Confidence            44433221                                          011122345688999999999999999999


Q ss_pred             CH----HHHhcCCCCccchhcchHh
Q 004835          678 SA----EDALKHEFFAPCHEMLRKQ  698 (728)
Q Consensus       678 ta----~e~L~Hp~f~~~~~~~~~~  698 (728)
                      ++    .++++||||..+.+....+
T Consensus       240 ~~~~~~~~il~~~~~~~~~~~~~~~  264 (323)
T cd05575         240 GAKDDFLEIKNHVFFSSINWDDLVN  264 (323)
T ss_pred             CCCCCHHHHHcCCCcCCCCHHHHhh
Confidence            97    6999999999887654433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=5.5e-39  Score=378.74  Aligned_cols=170  Identities=26%  Similarity=0.352  Sum_probs=144.3

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      |.+++|.+.++||+|+||.||+|.+..+++.||||++....     ....+..|+.++..+.|++ |+++++++......
T Consensus         1 p~~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~-Iv~~~~~~~~~~~~   79 (669)
T cd05610           1 PSIEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPF-IVHLYYSLQSANNV   79 (669)
T ss_pred             CccCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCC-cCeEEEEEEECCEE
Confidence            34689999999999999999999999999999999987532     2356788999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |+||||+.++.|..++.   .+++..++.|+.||+.||.|||.+|||||||||+||||+ ..+.++|+|||+++......
T Consensus        80 ~lVmEy~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~-~~g~vkL~DFGls~~~~~~~  158 (669)
T cd05610          80 YLVMEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLIS-NEGHIKLTDFGLSKVTLNRE  158 (669)
T ss_pred             EEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEc-CCCCEEEEeCCCCccccCCc
Confidence            99999999988877654   378889999999999999999999999999999999998 66789999999998755443


Q ss_pred             Cc-cccCCCCcCCCCCCCCCC
Q 004835          350 FN-QATLPGTKYVPPVNGRKV  369 (728)
Q Consensus       350 ~~-~~~~~~t~yipPe~~~~~  369 (728)
                      .. ....+++.|++||.....
T Consensus       159 ~~~~~~~~t~~~~~pe~~~~~  179 (669)
T cd05610         159 LNMMDILTTPSMAKPKNDYSR  179 (669)
T ss_pred             ccccccccCccccCccccccC
Confidence            22 234556778888865433

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=1.5e-39  Score=340.88  Aligned_cols=272  Identities=26%  Similarity=0.411  Sum_probs=208.7

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +|.+.+.||+|+||.||+|++..++..||||.+....    ....+.+|+.+++.+.|++ |+++++++..+...|+|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~v~e   79 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPN-IVCLQDVLMQESRLYLIFE   79 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCC-EeeeEEEEeeCCeEEEEEe
Confidence            5899999999999999999999899999999886432    2356788999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHh-----hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          278 HVKHDRPEVLK-----KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       278 ~~~~~~l~~l~-----~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |+.+++...+.     ..+++..++.++.||+.||.|||++||+||||||+|||++ .++.++|+|||++.......   
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~-~~~~~~l~dfg~~~~~~~~~---  155 (285)
T cd07861          80 FLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLID-NKGVIKLADFGLARAFGIPV---  155 (285)
T ss_pred             cCCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEc-CCCcEEECcccceeecCCCc---
Confidence            99875544442     2378899999999999999999999999999999999999 66789999999986310000   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (285)
T cd07861         156 --------------------------------------------------------------------------------  155 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (285)
T cd07861         156 --------------------------------------------------------------------------------  155 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                       .......|++.|+|||++.+...++.++|||||||++|+|++|++||
T Consensus       156 ---------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~  202 (285)
T cd07861         156 ---------------------------------RVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLF  202 (285)
T ss_pred             ---------------------------------ccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCC
Confidence                                             00012246888999999876666789999999999999999999999


Q ss_pred             CCCCh-HHHHHHHHHhCCch--HHHH-HHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          593 FGDPE-QNIKDIAKLRGSED--LWEV-AKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       593 ~~~~~-~~l~~i~~~~G~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      .+... ..+..+++.+|.+.  .|.. ....+....+          +......+       ......++.++.+||.+|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-------~~~~~~~~~~~~~li~~~  265 (285)
T cd07861         203 HGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTF----------PKWKKGSL-------RSAVKNLDEDGLDLLEKM  265 (285)
T ss_pred             CCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhc----------cccCcchh-------HHhcCCCCHHHHHHHHHH
Confidence            88765 45666666666422  2211 0000000000          00000000       111234788999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCC
Q 004835          669 LTVNPRLRISAEDALKHEFF  688 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f  688 (728)
                      |..||++|||+.++++||||
T Consensus       266 l~~dP~~Rpt~~~ll~~~~~  285 (285)
T cd07861         266 LIYDPAKRISAKKALNHPYF  285 (285)
T ss_pred             hcCChhhCCCHHHHhcCCCC
Confidence            99999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=1.1e-39  Score=344.59  Aligned_cols=141  Identities=23%  Similarity=0.350  Sum_probs=124.3

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .|++.+.||+|+||.||+|.+..+++.||+|.+....     ....+.+|+.++.+++|++ |+.+++.+...+..|+||
T Consensus         1 ~f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~-i~~~~~~~~~~~~~~lv~   79 (285)
T cd05630           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRF-VVSLAYAYETKDALCLVL   79 (285)
T ss_pred             CceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCC-eeeeeEEEecCCEEEEEE
Confidence            4788899999999999999999999999999876432     1234678999999999998 999999999999999999


Q ss_pred             eccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.++++..+..     .+++..+..++.|++.||.|||+.||+||||||+||+++ ..+.++|+|||++..
T Consensus        80 e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~-~~~~~~l~Dfg~~~~  151 (285)
T cd05630          80 TLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLD-DHGHIRISDLGLAVH  151 (285)
T ss_pred             EecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEEC-CCCCEEEeeccceee
Confidence            9999988866542     378889999999999999999999999999999999999 666799999999853

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-39  Score=351.94  Aligned_cols=142  Identities=25%  Similarity=0.301  Sum_probs=126.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||.||+++...+++.||+|++...     .....+.+|+.++..++|++ |+.+++++..++..|+|
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~~~~~~lv   79 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRW-ITNLHYAFQDENNLYLV   79 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCC-CCceEEEEecCCeEEEE
Confidence            4799999999999999999999999999999998642     23345778999999999988 99999999999999999


Q ss_pred             EeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++.+..+..    .+++..++.++.||+.||+|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        80 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~-~~~~~kl~Dfg~~~~  151 (331)
T cd05597          80 MDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLD-KNGHIRLADFGSCLR  151 (331)
T ss_pred             EecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEEC-CCCCEEEEECCceee
Confidence            99999988876653    378899999999999999999999999999999999998 667899999999864

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=1.8e-39  Score=350.89  Aligned_cols=142  Identities=23%  Similarity=0.260  Sum_probs=126.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|.+.++||+|+||.||++++..+++.||+|++...     .....+.+|+.++..+.|++ |+++++++...+..|+|
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~~~~~~lv   79 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQW-ITTLHYAFQDENNLYLV   79 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCC-EeeEEEEEecCCEEEEE
Confidence            4799999999999999999999999999999998642     22334778999999999988 99999999999999999


Q ss_pred             EeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++.+..+..    .+++..++.++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        80 ~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~-~~~~~kL~DfG~a~~  151 (332)
T cd05623          80 MDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMD-MNGHIRLADFGSCLK  151 (332)
T ss_pred             EeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEC-CCCCEEEeecchhee
Confidence            99999988876653    378889999999999999999999999999999999999 667899999999863

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=1.5e-39  Score=350.99  Aligned_cols=137  Identities=23%  Similarity=0.362  Sum_probs=119.7

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH  281 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~  281 (728)
                      +.||+|+||.||+|++..+++.||+|++....     ....+.+|+.++.++.++++|+.+++++...+.+|+||||+.+
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            36999999999999999999999999987532     2345778999999986444499999999999999999999999


Q ss_pred             CChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          282 DRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       282 ~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.+..+.   +.+++..++.++.||+.||+|||++||+||||||+|||++ .++.+||+|||++..
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~-~~~~~kl~Dfg~~~~  145 (327)
T cd05617          81 GDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVLLD-ADGHIKLTDYGMCKE  145 (327)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEe-CCCCEEEecccccee
Confidence            8886654   3489999999999999999999999999999999999999 667799999999863

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=1.6e-39  Score=357.81  Aligned_cols=144  Identities=24%  Similarity=0.299  Sum_probs=128.7

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..++|++.+.||+|+||.||+|++..+++.||+|++...     .....+.+|+.++..++|++ |+++++++..+...|
T Consensus        41 ~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~-iv~~~~~~~~~~~~~  119 (371)
T cd05622          41 KAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW-VVQLFYAFQDDRYLY  119 (371)
T ss_pred             chhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCC-CCeEEEEEEcCCEEE
Confidence            347999999999999999999999999999999998642     22345678999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||++++.+..+.+  .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus       120 lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~-~~~~ikL~DfG~a~~  191 (371)
T cd05622         120 MVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLD-KSGHLKLADFGTCMK  191 (371)
T ss_pred             EEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEEC-CCCCEEEEeCCceeE
Confidence            9999999998877664  378889999999999999999999999999999999999 667899999999874

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=4e-40  Score=353.40  Aligned_cols=136  Identities=24%  Similarity=0.329  Sum_probs=119.2

Q ss_pred             EEecccCceEEEEEEEc---CCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          207 EEEGSGGYGTVYRARRK---NDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~---~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      +.||+|+||.||++++.   .+|+.||+|++....    ....+.+|+.++.+++|+| |+++++++..++..|+||||+
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~lv~e~~   80 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPF-IVKLHYAFQTEGKLYLILDFL   80 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCC-cccEEEEEEcCCEEEEEEcCC
Confidence            57999999999999863   578999999987432    2345678999999999999 999999999999999999999


Q ss_pred             CCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          280 KHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       280 ~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .++.+.....   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        81 ~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~-~~~~~kL~Dfg~~~~  147 (318)
T cd05582          81 RGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLD-EEGHIKLTDFGLSKE  147 (318)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEEC-CCCcEEEeeccCCcc
Confidence            9888766543   388999999999999999999999999999999999999 667899999999864

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=5.9e-40  Score=353.45  Aligned_cols=252  Identities=23%  Similarity=0.337  Sum_probs=200.0

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHH-HHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELR-MLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~-iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +.||+|+||+||+|++..+|+.||||++...     .....+..|.. +++.++|+| |+++++++..++..|+||||+.
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~-iv~~~~~~~~~~~~~lv~e~~~   79 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPF-LVGLHYSFQTTEKLYFVLDFVN   79 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCC-CccEEEEEecCCEEEEEEcCCC
Confidence            3689999999999999999999999998643     12234455554 467799998 9999999999999999999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCC
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG  357 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~  357 (728)
                      ++.+.....   .+++..+..++.||+.||.|||++||+||||||+||||+ .++.++|+|||+++.....         
T Consensus        80 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~-~~~~~kL~DfG~~~~~~~~---------  149 (325)
T cd05604          80 GGELFFHLQRERSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENILLD-SQGHVVLTDFGLCKEGIAQ---------  149 (325)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEEC-CCCCEEEeecCCcccCCCC---------
Confidence            988765542   388999999999999999999999999999999999999 6678999999998631000         


Q ss_pred             CcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccc
Q 004835          358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAE  437 (728)
Q Consensus       358 t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (728)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (325)
T cd05604         150 --------------------------------------------------------------------------------  149 (325)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCch
Q 004835          438 RLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLS  517 (728)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  517 (728)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (325)
T cd05604         150 --------------------------------------------------------------------------------  149 (325)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          518 DLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       518 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                                 .......+||+.|+|||++.+.. ++.++|||||||++|+|++|..||.+.+.
T Consensus       150 ---------------------------~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwslG~il~el~~G~~pf~~~~~  201 (325)
T cd05604         150 ---------------------------SDTTTTFCGTPEYLAPEVIRKQP-YDNTVDWWCLGAVLYEMLYGLPPFYCRDV  201 (325)
T ss_pred             ---------------------------CCCcccccCChhhCCHHHHcCCC-CCCcCccccccceehhhhcCCCCCCCCCH
Confidence                                       00001345899999999996554 68999999999999999999999988765


Q ss_pred             HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC
Q 004835          598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI  677 (728)
Q Consensus       598 ~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp  677 (728)
                      ..+...+.                                          .....+...++..+.+||.+||..||.+||
T Consensus       202 ~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~ll~~ll~~~p~~R~  239 (325)
T cd05604         202 AEMYDNIL------------------------------------------HKPLVLRPGASLTAWSILEELLEKDRQRRL  239 (325)
T ss_pred             HHHHHHHH------------------------------------------cCCccCCCCCCHHHHHHHHHHhccCHHhcC
Confidence            44433221                                          001122235678899999999999999999


Q ss_pred             CH----HHHhcCCCCccchhcchHhH
Q 004835          678 SA----EDALKHEFFAPCHEMLRKQK  699 (728)
Q Consensus       678 ta----~e~L~Hp~f~~~~~~~~~~~  699 (728)
                      ++    .++++||||..+.+....++
T Consensus       240 ~~~~~~~~i~~h~~f~~~~~~~~~~~  265 (325)
T cd05604         240 GAKEDFLEIQEHPFFESLSWTDLEQK  265 (325)
T ss_pred             CCCCCHHHHhcCCCcCCCCHHHHHhC
Confidence            86    58999999998876554443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-41  Score=363.49  Aligned_cols=252  Identities=27%  Similarity=0.379  Sum_probs=209.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ..|...+.||+|.||.||+|.+..+++.||||++....   ..+.++.|+.+|..+.+++ |.++|++|..+..+|++||
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~-it~yygsyl~g~~LwiiMe   91 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPN-ITEYYGSYLKGTKLWIIME   91 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcch-HHhhhhheeecccHHHHHH
Confidence            36788899999999999999999999999999998543   3456889999999999988 9999999999999999999


Q ss_pred             ccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcccc
Q 004835          278 HVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQAT  354 (728)
Q Consensus       278 ~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~  354 (728)
                      ||.||+...+.+.   +.+..+..++++++.||.|||.++.+|||||+.|||+. ..+.+||+|||++.......     
T Consensus        92 y~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s-~~g~vkl~DfgVa~ql~~~~-----  165 (467)
T KOG0201|consen   92 YCGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANILLS-ESGDVKLADFGVAGQLTNTV-----  165 (467)
T ss_pred             HhcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhcceecccccccceeEe-ccCcEEEEecceeeeeechh-----
Confidence            9999988776653   48888999999999999999999999999999999999 44789999999997532110     


Q ss_pred             CCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCC
Q 004835          355 LPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRT  434 (728)
Q Consensus       355 ~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (728)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (467)
T KOG0201|consen  166 --------------------------------------------------------------------------------  165 (467)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCC
Q 004835          435 PAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPS  514 (728)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (728)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (467)
T KOG0201|consen  166 --------------------------------------------------------------------------------  165 (467)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 004835          515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG  594 (728)
Q Consensus       515 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~  594 (728)
                                                     .+...++|||.||||||+.+. .|+.++||||||++.+||++|.+||..
T Consensus       166 -------------------------------~rr~tfvGTPfwMAPEVI~~~-~Y~~KADIWSLGITaiEla~GePP~s~  213 (467)
T KOG0201|consen  166 -------------------------------KRRKTFVGTPFWMAPEVIKQS-GYDTKADIWSLGITAIELAKGEPPHSK  213 (467)
T ss_pred             -------------------------------hccccccccccccchhhhccc-cccchhhhhhhhHHHHHHhcCCCCCcc
Confidence                                           111367899999999999644 479999999999999999999999977


Q ss_pred             CChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCC
Q 004835          595 DPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR  674 (728)
Q Consensus       595 ~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~  674 (728)
                      ..+..+.-+                               +|.          ...|.....+++.+++|+..||..||+
T Consensus       214 ~hPmrvlfl-------------------------------Ipk----------~~PP~L~~~~S~~~kEFV~~CL~k~P~  252 (467)
T KOG0201|consen  214 LHPMRVLFL-------------------------------IPK----------SAPPRLDGDFSPPFKEFVEACLDKNPE  252 (467)
T ss_pred             cCcceEEEe-------------------------------ccC----------CCCCccccccCHHHHHHHHHHhhcCcc
Confidence            554211000                               000          011223346788999999999999999


Q ss_pred             CCCCHHHHhcCCCCccch
Q 004835          675 LRISAEDALKHEFFAPCH  692 (728)
Q Consensus       675 ~Rpta~e~L~Hp~f~~~~  692 (728)
                      .||+|.++|+|+|.+...
T Consensus       253 ~RpsA~~LLKh~FIk~a~  270 (467)
T KOG0201|consen  253 FRPSAKELLKHKFIKRAK  270 (467)
T ss_pred             cCcCHHHHhhhHHHHhcC
Confidence            999999999999999744

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.7e-40  Score=354.04  Aligned_cols=252  Identities=27%  Similarity=0.380  Sum_probs=198.8

Q ss_pred             ecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhc---CCCCceEEecceEEeCCeeEEEEeccC
Q 004835          209 EGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERF---GGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       209 LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L---~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      ||+|+||+||+|++..+|+.||||++....     ....+..|..++..+   .|++ |+.+++++......|+||||+.
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~-i~~~~~~~~~~~~~~lv~e~~~   79 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPF-IVGLKFSFQTDSDLYLVTDYMS   79 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCc-CcceEEEEecCCeEEEEEcCCC
Confidence            699999999999999999999999986421     122344566777665   4776 9999999999999999999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCC
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG  357 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~  357 (728)
                      ++.+.....   .+++..++.++.||+.||+|||++||+||||||+||||+ .++.++|+|||++.......        
T Consensus        80 ~g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~-~~~~~kl~Dfg~a~~~~~~~--------  150 (330)
T cd05586          80 GGELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLD-ATGHIALCDFGLSKANLTDN--------  150 (330)
T ss_pred             CChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEEC-CCCCEEEecCCcCcCCCCCC--------
Confidence            988765543   388999999999999999999999999999999999999 66789999999986310000        


Q ss_pred             CcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccc
Q 004835          358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAE  437 (728)
Q Consensus       358 t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (330)
T cd05586         151 --------------------------------------------------------------------------------  150 (330)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCch
Q 004835          438 RLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLS  517 (728)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  517 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (330)
T cd05586         151 --------------------------------------------------------------------------------  150 (330)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          518 DLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       518 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                                  ......+||+.|+|||++.+...++.++|||||||++|+|++|..||.+...
T Consensus       151 ----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~  202 (330)
T cd05586         151 ----------------------------KTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDT  202 (330)
T ss_pred             ----------------------------CCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCH
Confidence                                        0011345899999999997666579999999999999999999999988765


Q ss_pred             HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC
Q 004835          598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI  677 (728)
Q Consensus       598 ~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp  677 (728)
                      ..+...+. .|             ...++                           ...+++++.+||.+||..||.+||
T Consensus       203 ~~~~~~i~-~~-------------~~~~~---------------------------~~~~~~~~~~li~~~L~~~P~~R~  241 (330)
T cd05586         203 QQMYRNIA-FG-------------KVRFP---------------------------KNVLSDEGRQFVKGLLNRNPQHRL  241 (330)
T ss_pred             HHHHHHHH-cC-------------CCCCC---------------------------CccCCHHHHHHHHHHcCCCHHHCC
Confidence            54433221 00             00011                           023678899999999999999998


Q ss_pred             ----CHHHHhcCCCCccchhcchHhH
Q 004835          678 ----SAEDALKHEFFAPCHEMLRKQK  699 (728)
Q Consensus       678 ----ta~e~L~Hp~f~~~~~~~~~~~  699 (728)
                          ++.++++||||.++.+.....+
T Consensus       242 ~~~~~~~~ll~h~~~~~~~~~~~~~~  267 (330)
T cd05586         242 GAHRDAVELKEHPFFADIDWDLLSKK  267 (330)
T ss_pred             CCCCCHHHHhcCccccCCCHHHHHhC
Confidence                7999999999998876555443

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=3e-39  Score=339.70  Aligned_cols=134  Identities=24%  Similarity=0.346  Sum_probs=117.7

Q ss_pred             ecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCC
Q 004835          209 EGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       209 LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~  283 (728)
                      ||+|+||.||+++...+|+.||+|++....     ....+..|+.++++++|++ |+++++++..+...|+||||+.++.
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~-i~~~~~~~~~~~~~~lv~e~~~g~~   79 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPF-IVNLAYAFESKTHLCLVMSLMNGGD   79 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCc-EEEEEEEEecCCeEEEEEecCCCCC
Confidence            699999999999999999999999886421     2234567999999999998 9999999999999999999999988


Q ss_pred             hHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          284 PEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       284 l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +..+..     .+++..+..++.||+.||+|||+.||+||||||+|||++ +++.++|+|||++..
T Consensus        80 L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~-~~~~~~l~Dfg~~~~  144 (277)
T cd05607          80 LKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLD-DQGNCRLSDLGLAVE  144 (277)
T ss_pred             HHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEc-CCCCEEEeeceeeee
Confidence            865542     378888899999999999999999999999999999999 667799999999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=3.1e-39  Score=349.75  Aligned_cols=143  Identities=25%  Similarity=0.364  Sum_probs=127.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .++|++.+.||.|+||.||+|.+..++..+|+|++....   ....+.+|+.++..++|+| |++++++|...+..|+||
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~   82 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPY-IVGFYGAFYSDGEISICM   82 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCc-ccceeEEEEECCEEEEEE
Confidence            368999999999999999999999999999999887542   2356889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.+++|..+..   .+++..+..++.|++.||.|||+. +|+||||||+|||++ ..+.+||+|||++..
T Consensus        83 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~-~~~~~kL~Dfg~~~~  153 (333)
T cd06650          83 EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVN-SRGEIKLCDFGVSGQ  153 (333)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEc-CCCCEEEeeCCcchh
Confidence            9999988877653   378889999999999999999975 799999999999998 566799999999863

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.9e-39  Score=356.90  Aligned_cols=139  Identities=24%  Similarity=0.350  Sum_probs=122.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEc--CCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRK--NDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~--~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .+|.+++.||.|+||.||+|...  .+++.||+|.+....   ...+|+.+|++++|++ |+++++++......|+|||+
T Consensus        92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~---~~~~E~~il~~l~h~~-iv~~~~~~~~~~~~~lv~e~  167 (392)
T PHA03207         92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGK---TPGREIDILKTISHRA-IINLIHAYRWKSTVCMVMPK  167 (392)
T ss_pred             CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccccc---cHHHHHHHHHhcCCCC-ccceeeeEeeCCEEEEEehh
Confidence            47999999999999999999764  346889999876542   3468999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.++++..+..  .+++..++.++.||+.||.|||++|||||||||+|||++ ..+.++|+|||++..
T Consensus       168 ~~~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~-~~~~~~l~DfG~a~~  234 (392)
T PHA03207        168 YKCDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLD-EPENAVLGDFGAACK  234 (392)
T ss_pred             cCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEc-CCCCEEEccCccccc
Confidence            99877766643  389999999999999999999999999999999999999 667899999999864

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=5.3e-39  Score=339.18  Aligned_cols=141  Identities=22%  Similarity=0.348  Sum_probs=124.3

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .|+..+.||+|+||+||+|.+..+++.||+|++....     ....+.+|+.+++.++|++ |+.+++++..++..|+||
T Consensus         1 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~-i~~~~~~~~~~~~~~lv~   79 (285)
T cd05632           1 TFRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQF-VVNLAYAYETKDALCLVL   79 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcC-ceeEEEEEecCCEEEEEE
Confidence            3788899999999999999999999999999986432     2234678999999999998 999999999999999999


Q ss_pred             eccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.++.+..+..     .+++..+..++.|++.||.|||++||+||||||+||+++ +++.++|+|||++..
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~-~~~~~kl~Dfg~~~~  151 (285)
T cd05632          80 TIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENILLD-DYGHIRISDLGLAVK  151 (285)
T ss_pred             EeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEC-CCCCEEEecCCccee
Confidence            9999988765432     388999999999999999999999999999999999998 566799999999863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=1.3e-38  Score=333.54  Aligned_cols=142  Identities=28%  Similarity=0.412  Sum_probs=127.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ++|++...||+|+||.||+|++..+|+.||+|++....    ....+.+|+.++..+.|+| |+++++++..+...++||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~-i~~~~~~~~~~~~~~~v~   79 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPN-LVNLIEVFRRKRKLHLVF   79 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCC-EeeeeeEEeeCCEEEEEE
Confidence            47999999999999999999999899999999876432    2345778999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||++++++..+..   .+++..++.++.||+.||+|||++||+||||||+||+++ .++.++|+|||++..
T Consensus        80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~-~~~~~~l~dfg~~~~  149 (286)
T cd07847          80 EYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILIT-KQGQIKLCDFGFARI  149 (286)
T ss_pred             eccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEc-CCCcEEECcccccee
Confidence            9999998887653   388999999999999999999999999999999999999 566799999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-41  Score=387.55  Aligned_cols=258  Identities=26%  Similarity=0.369  Sum_probs=213.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC-----cCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA-----NASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~-----~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      -++|.|+++||+|+||.|.+++.+.+++.||+|++.+     ......|..|-.||..-+ ..+|+.++..|++..++|+
T Consensus        74 ~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~n-s~Wiv~LhyAFQD~~~LYl  152 (1317)
T KOG0612|consen   74 AEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGN-SEWIVQLHYAFQDERYLYL  152 (1317)
T ss_pred             HHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCC-cHHHHHHHHHhcCccceEE
Confidence            4689999999999999999999999999999999875     445667888888888766 4569999999999999999


Q ss_pred             EEeccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          275 VLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       275 V~E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      ||||++||.+-.+...   +++..+++|+..|+.||..||+.|+|||||||+||||| ..|++||+|||.|..+...+. 
T Consensus       153 VMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld-~~GHikLADFGsClkm~~dG~-  230 (1317)
T KOG0612|consen  153 VMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLD-KSGHIKLADFGSCLKMDADGT-  230 (1317)
T ss_pred             EEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEec-ccCcEeeccchhHHhcCCCCc-
Confidence            9999999988776643   78999999999999999999999999999999999999 777899999999864321110 


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       231 --------------------------------------------------------------------------------  230 (1317)
T KOG0612|consen  231 --------------------------------------------------------------------------------  230 (1317)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       231 --------------------------------------------------------------------------------  230 (1317)
T KOG0612|consen  231 --------------------------------------------------------------------------------  230 (1317)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhh----ccCCCCCchhHHHHHHHHHHHhc
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLF----RSQHQGPKLDIWSAGVTLLYLMI  587 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~----~~~~~~~~~DIWSlG~il~eLlt  587 (728)
                                                        ......||||.|.|||+|.    +.+.||..+||||+||++|||++
T Consensus       231 ----------------------------------V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMly  276 (1317)
T KOG0612|consen  231 ----------------------------------VRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLY  276 (1317)
T ss_pred             ----------------------------------EEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHc
Confidence                                              0112458999999999994    22568999999999999999999


Q ss_pred             CCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          588 GRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       588 G~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      |.+||+.++- +....|+..             -....||.+                          -.+|.+++|||.
T Consensus       277 G~TPFYadslveTY~KIm~h-------------k~~l~FP~~--------------------------~~VSeeakdLI~  317 (1317)
T KOG0612|consen  277 GETPFYADSLVETYGKIMNH-------------KESLSFPDE--------------------------TDVSEEAKDLIE  317 (1317)
T ss_pred             CCCcchHHHHHHHHHHHhch-------------hhhcCCCcc--------------------------cccCHHHHHHHH
Confidence            9999998664 333444421             112344422                          248999999999


Q ss_pred             HhcccCCCCCCC---HHHHhcCCCCccchhc
Q 004835          667 KCLTVNPRLRIS---AEDALKHEFFAPCHEM  694 (728)
Q Consensus       667 ~~L~~dP~~Rpt---a~e~L~Hp~f~~~~~~  694 (728)
                      ++|+ +|+.|..   ++++..||||.++.|.
T Consensus       318 ~ll~-~~e~RLgrngiedik~HpFF~g~~W~  347 (1317)
T KOG0612|consen  318 ALLC-DREVRLGRNGIEDIKNHPFFEGIDWD  347 (1317)
T ss_pred             HHhc-ChhhhcccccHHHHHhCccccCCChh
Confidence            9998 6999998   9999999999999993

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-40  Score=315.54  Aligned_cols=277  Identities=30%  Similarity=0.498  Sum_probs=222.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .+|.-.++||+|+||+||+|+.+.+++.||+|.++...    ......+||-+|+.+.|.| |+++++....+..+.+|+
T Consensus         2 ~~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhkn-ivrl~dvlhsdkkltlvf   80 (292)
T KOG0662|consen    2 QKYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN-IVRLHDVLHSDKKLTLVF   80 (292)
T ss_pred             cchHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcc-eeehhhhhccCceeEEeH
Confidence            35777789999999999999999999999999987543    3456789999999999999 999999999999999999


Q ss_pred             eccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          277 EHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       277 E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      |||..++-..+.   ..++...++.++.|+++||.|+|+++++||||||.|+||+ .++.+||+|||+|+..        
T Consensus        81 e~cdqdlkkyfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin-~ngelkladfglaraf--------  151 (292)
T KOG0662|consen   81 EFCDQDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLIN-RNGELKLADFGLARAF--------  151 (292)
T ss_pred             HHhhHHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEec-cCCcEEecccchhhhc--------
Confidence            999987655443   3488899999999999999999999999999999999999 7788999999999741        


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                            |-                        
T Consensus       152 ------------------------------------------------------gi------------------------  153 (292)
T KOG0662|consen  152 ------------------------------------------------------GI------------------------  153 (292)
T ss_pred             ------------------------------------------------------CC------------------------
Confidence                                                                  10                        


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                          ++.         
T Consensus       154 --------------------------------------------------------------------pvr---------  156 (292)
T KOG0662|consen  154 --------------------------------------------------------------------PVR---------  156 (292)
T ss_pred             --------------------------------------------------------------------ceE---------
Confidence                                                                                000         


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhc-CCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPF  592 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLlt-G~~PF  592 (728)
                                                       -.+..+-|.+|++|.++++...|++.+|+||.|||+.|+.. |++.|
T Consensus       157 ---------------------------------cysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplf  203 (292)
T KOG0662|consen  157 ---------------------------------CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF  203 (292)
T ss_pred             ---------------------------------eeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCC
Confidence                                             01123569999999999999999999999999999999987 88889


Q ss_pred             CCCC-hHHHHHHHHHhCCc--hHHH-HHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          593 FGDP-EQNIKDIAKLRGSE--DLWE-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       593 ~~~~-~~~l~~i~~~~G~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      .|.+ ++++..|+.++|.+  +.|. +.++.+... ||       .+|  ...+|..+.       ..+....+||+.++
T Consensus       204 pg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~-yp-------~yp--attswsqiv-------p~lns~grdllqkl  266 (292)
T KOG0662|consen  204 PGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKP-YP-------IYP--ATTSWSQIV-------PKLNSTGRDLLQKL  266 (292)
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCCccccCCCCcc-cC-------Ccc--ccchHHHHh-------hhhcchhHHHHHHH
Confidence            8865 48999999999974  4443 222222111 11       001  112444332       34556788999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCccch
Q 004835          669 LTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      |.-+|..|++|+++|+||||.+..
T Consensus       267 l~cnp~qrisaeaalqhpyf~d~s  290 (292)
T KOG0662|consen  267 LKCNPAQRISAEAALQHPYFSDFS  290 (292)
T ss_pred             hccCcccccCHHHHhcCccccccC
Confidence            999999999999999999998753

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=1.9e-39  Score=348.60  Aligned_cols=135  Identities=24%  Similarity=0.357  Sum_probs=116.3

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHH-HHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELR-MLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~-iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      ++||+|+||.||+|++..+|+.||+|++....     ....+..|.. +++.++|+| |+++++++...+..|+||||++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~-iv~~~~~~~~~~~~~lv~e~~~   79 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPF-LVGLHYSFQTAEKLYFVLDYVN   79 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCC-ccceeeEEEcCCEEEEEEcCCC
Confidence            36999999999999999999999999986431     2233445554 678899998 9999999999999999999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      ++.+.....   .+++..+..++.||+.||.|||++||+||||||+||||+ .++.+||+|||++.
T Consensus        80 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~-~~~~~kl~Dfg~~~  144 (321)
T cd05603          80 GGELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLD-SQGHVVLTDFGLCK  144 (321)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEEC-CCCCEEEccCCCCc
Confidence            988865542   378899999999999999999999999999999999999 66789999999986

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-40  Score=354.98  Aligned_cols=256  Identities=24%  Similarity=0.319  Sum_probs=223.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +-|.+.+.||+|.|+.|-+|++.-+|..||||++.+..    ....+..|++.++-++||| ||++|.+..+...+|||+
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpN-iVRLYEViDTQTKlyLiL   96 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPN-IVRLYEVIDTQTKLYLIL   96 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcC-eeeeeehhcccceEEEEE
Confidence            35899999999999999999999999999999998653    3456889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHh-h---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          277 EHVKHDRPEVLK-K---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       277 E~~~~~~l~~l~-~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |+-.+|.+..++ +   .+.+..++.|++||+.|+.|+|...||||||||+|+++-.+-+-+||.|||++...       
T Consensus        97 ELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf-------  169 (864)
T KOG4717|consen   97 ELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKF-------  169 (864)
T ss_pred             EecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccC-------
Confidence            999987776654 2   38999999999999999999999999999999999999877788999999998531       


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                              .|                                                                      
T Consensus       170 --------~P----------------------------------------------------------------------  171 (864)
T KOG4717|consen  170 --------QP----------------------------------------------------------------------  171 (864)
T ss_pred             --------CC----------------------------------------------------------------------
Confidence                    00                                                                      


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (864)
T KOG4717|consen  172 --------------------------------------------------------------------------------  171 (864)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                      .++.+..||+..|.|||+|+|..+..+++||||||||||.|++|++||
T Consensus       172 --------------------------------G~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PF  219 (864)
T KOG4717|consen  172 --------------------------------GKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPF  219 (864)
T ss_pred             --------------------------------cchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCcc
Confidence                                            122346679999999999999998889999999999999999999999


Q ss_pred             CCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          593 FGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       593 ~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      ...++ +.+..||                                           ...+.++..++.+.+|||..||..
T Consensus       220 qeANDSETLTmIm-------------------------------------------DCKYtvPshvS~eCrdLI~sMLvR  256 (864)
T KOG4717|consen  220 QEANDSETLTMIM-------------------------------------------DCKYTVPSHVSKECRDLIQSMLVR  256 (864)
T ss_pred             ccccchhhhhhhh-------------------------------------------cccccCchhhhHHHHHHHHHHHhc
Confidence            87665 4455554                                           234566788999999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccchhcchH
Q 004835          672 NPRLRISAEDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~~~~~~~  697 (728)
                      ||.+|.+.+++..|+|++.+.+.+.-
T Consensus       257 dPkkRAslEeI~s~~Wlq~~D~~~sT  282 (864)
T KOG4717|consen  257 DPKKRASLEEIVSTSWLQAGDRGLST  282 (864)
T ss_pred             CchhhccHHHHhccccccCCCCCccc
Confidence            99999999999999999998877654

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=2e-39  Score=349.32  Aligned_cols=136  Identities=25%  Similarity=0.312  Sum_probs=116.0

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHH-HHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNEL-RMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei-~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +.||+|+||+||+|++..+++.||+|++....     ....+..|. .+++.+.|++ |+++++++...+..|+||||+.
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~-Iv~~~~~~~~~~~~~lv~e~~~   79 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPF-LVGLHFSFQTADKLYFVLDYIN   79 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCC-CCceeEEEEcCCeEEEEEeCCC
Confidence            36999999999999999999999999986431     222334444 3567889998 9999999999999999999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++.+..+..   .+.+..++.++.||+.||.|||++||+||||||+|||++ .++.++|+|||+++.
T Consensus        80 ~~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~-~~~~~kl~DfG~a~~  145 (325)
T cd05602          80 GGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLD-SQGHIVLTDFGLCKE  145 (325)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEC-CCCCEEEccCCCCcc
Confidence            988876653   378889999999999999999999999999999999998 667899999999863

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.5e-39  Score=365.81  Aligned_cols=139  Identities=24%  Similarity=0.318  Sum_probs=124.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      ..+|.+.+.||+|+||.||+|.+..+++.||||....    ..+.+|+.+|++++|+| |+++++++..++..|+|||++
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~----~~~~~E~~iL~~L~Hpn-Iv~l~~~~~~~~~~~lv~e~~  242 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWY----ASSVHEARLLRRLSHPA-VLALLDVRVVGGLTCLVLPKY  242 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccc----cCHHHHHHHHHHCCCCC-CCcEEEEEEECCEEEEEEEcc
Confidence            4589999999999999999999999999999996432    23568999999999999 999999999999999999999


Q ss_pred             CCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          280 KHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       280 ~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .++++..+..   .+++..++.|+.||+.||.|||++|||||||||+||||+ ..+.++|+|||+++.
T Consensus       243 ~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~-~~~~vkL~DFGla~~  309 (461)
T PHA03211        243 RSDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVN-GPEDICLGDFGAACF  309 (461)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEEC-CCCCEEEcccCCcee
Confidence            8776666543   388999999999999999999999999999999999998 666799999999874

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=1.6e-38  Score=335.20  Aligned_cols=143  Identities=28%  Similarity=0.417  Sum_probs=126.1

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .++|.+.+.||+|+||.||+|.+..+|+.||+|++....   ....+.+|+.+++.+.|+| |+++++++..+...|+||
T Consensus         4 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~n-i~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           4 ATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHAN-IVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             cceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCC-EeEEEEEEecCCeEEEEE
Confidence            468999999999999999999999899999999986432   2235678999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.++++..+..   .+.+..++.++.||+.||.|||+.||+||||||+|||++ ..+.++|+|||++..
T Consensus        83 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~-~~~~~~l~Dfg~~~~  152 (291)
T cd07870          83 EYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLIS-YLGELKLADFGLARA  152 (291)
T ss_pred             ecccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEc-CCCcEEEeccccccc
Confidence            9998776665543   267888999999999999999999999999999999998 667899999999863

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=5.4e-39  Score=347.31  Aligned_cols=142  Identities=21%  Similarity=0.237  Sum_probs=126.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|.+.+.||+|+||.||++++..+++.||+|++...     .....+.+|+.++..+.|++ |+.+++++...+..|+|
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~l~~~~~~~~~~~lv   79 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQW-ITTLHYAFQDENYLYLV   79 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCC-EeeEEEEEEcCCEEEEE
Confidence            4799999999999999999999999999999998642     22344678899999999988 99999999999999999


Q ss_pred             EeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++.+..+..    .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus        80 ~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~-~~~~~kl~DfG~a~~  151 (331)
T cd05624          80 MDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLD-MNGHIRLADFGSCLK  151 (331)
T ss_pred             EeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEc-CCCCEEEEeccceee
Confidence            99999988876653    378899999999999999999999999999999999999 667799999999864

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=2e-38  Score=334.94  Aligned_cols=283  Identities=25%  Similarity=0.392  Sum_probs=214.0

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      +++|++.+.||.|+||.||+|.+..+|+.||+|.+....    ....+.+|+.+++++.|++ |+++++++..+...|+|
T Consensus         1 ~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv   79 (294)
T PLN00009          1 MDQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGN-IVRLQDVVHSEKRLYLV   79 (294)
T ss_pred             CCceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCC-EeeEEEEEecCCeEEEE
Confidence            468999999999999999999999899999999886432    2345778999999999998 99999999999999999


Q ss_pred             EeccCCCChHHHhhc----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          276 LEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       276 ~E~~~~~~l~~l~~~----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      |||+++++...+...    +++..+..++.||+.||+|||++||+||||||+||+++..+..+||+|||++.......  
T Consensus        80 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~--  157 (294)
T PLN00009         80 FEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPV--  157 (294)
T ss_pred             EecccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCc--
Confidence            999987665555432    46778889999999999999999999999999999998666779999999986411000  


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (294)
T PLN00009        158 --------------------------------------------------------------------------------  157 (294)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (294)
T PLN00009        158 --------------------------------------------------------------------------------  157 (294)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                        .......|++.|+|||++.+...++.++||||+||++|+|++|.+|
T Consensus       158 ----------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~p  203 (294)
T PLN00009        158 ----------------------------------RTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPL  203 (294)
T ss_pred             ----------------------------------cccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence                                              0001234688999999986655678999999999999999999999


Q ss_pred             CCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          592 FFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       592 F~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      |.+.+. +.+.+++...+.+..........    .+........++....          ......++..+.+||.+||.
T Consensus       204 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i~~~l~  269 (294)
T PLN00009        204 FPGDSEIDELFKIFRILGTPNEETWPGVTS----LPDYKSAFPKWPPKDL----------ATVVPTLEPAGVDLLSKMLR  269 (294)
T ss_pred             CCCCCHHHHHHHHHHHhCCCChhhcccccc----chhhhhhcccCCCCCH----------HHhCcCCChHHHHHHHHHcc
Confidence            987655 55666666666432211110000    0000000000000000          01124567889999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccchh
Q 004835          671 VNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      .+|++||++.++++||||.++.+
T Consensus       270 ~~P~~Rps~~~~l~~~~~~~~~~  292 (294)
T PLN00009        270 LDPSKRITARAALEHEYFKDLGD  292 (294)
T ss_pred             CChhhCcCHHHHhcCchHhHHhc
Confidence            99999999999999999998765

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=1.5e-38  Score=338.21  Aligned_cols=285  Identities=26%  Similarity=0.382  Sum_probs=212.1

Q ss_pred             CeeEEEEecccCceEEEEEEEcC--CCeEEEEEeccC-----cCchhHHHHHHHHHHhcCCCCceEEecceEEeC--Cee
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKN--DGTVVAIKCPHA-----NASKHYVSNELRMLERFGGKNFIIKYEGCFKCG--DSD  272 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~--~g~~VAIK~i~~-----~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~--~~~  272 (728)
                      +|.+.+.||+|+||.||+|.+..  +++.||+|.+..     ......+.+|+.++..++|++ |+++++++...  ...
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~   79 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHEN-VVSLVEVFLEHADKSV   79 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCC-ccceEEEEeCCCCceE
Confidence            58999999999999999999988  799999999876     233456788999999999999 99999999988  889


Q ss_pred             EEEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec---CCCceEEEeeecc
Q 004835          273 CFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC---KAVKGYLIDFNLA  342 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~---~~~~~kL~DFGlA  342 (728)
                      |+||||++++++..+..       .+++..++.++.||+.||.|||+++|+||||||+|||++.   ..+.+||+|||++
T Consensus        80 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~  159 (316)
T cd07842          80 YLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLA  159 (316)
T ss_pred             EEEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccc
Confidence            99999999876654431       3778899999999999999999999999999999999983   1677999999998


Q ss_pred             ccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCC
Q 004835          343 MVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSG  422 (728)
Q Consensus       343 ~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~  422 (728)
                      ........                                                                        
T Consensus       160 ~~~~~~~~------------------------------------------------------------------------  167 (316)
T cd07842         160 RLFNAPLK------------------------------------------------------------------------  167 (316)
T ss_pred             cccCCCcc------------------------------------------------------------------------
Confidence            74210000                                                                        


Q ss_pred             ccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcc
Q 004835          423 ITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIA  502 (728)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (728)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (316)
T cd07842         168 --------------------------------------------------------------------------------  167 (316)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHH
Q 004835          503 VAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTL  582 (728)
Q Consensus       503 ~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il  582 (728)
                                                               ........+||..|+|||++.+...++.++|||||||++
T Consensus       168 -----------------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l  206 (316)
T cd07842         168 -----------------------------------------PLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIF  206 (316)
T ss_pred             -----------------------------------------cccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHH
Confidence                                                     000011345789999999987766678999999999999


Q ss_pred             HHHhcCCCCCCCCCh----------HHHHHHHHHhCCchHHHHHHhccCCCCCcch--hhcccCCCCCCchhhhhhhccC
Q 004835          583 LYLMIGRTPFFGDPE----------QNIKDIAKLRGSEDLWEVAKLHNRESSFPED--LYAAKSLPPINLPEWCKLITKR  650 (728)
Q Consensus       583 ~eLltG~~PF~~~~~----------~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  650 (728)
                      |+|++|++||.+...          ..+..++..++.+........... ..|...  .......+...+..|...    
T Consensus       207 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----  281 (316)
T cd07842         207 AELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKM-PEYDTLMKDFKTKTYPSNSLAKWMEK----  281 (316)
T ss_pred             HHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhc-ccchhhhhhccCCCCCCccHHHHHHh----
Confidence            999999999976443          246667777775433222111110 011110  000111111111222111    


Q ss_pred             CcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCC
Q 004835          651 PDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFF  688 (728)
Q Consensus       651 ~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f  688 (728)
                         ....+..+.+||.+||.+||++|||+.|+++||||
T Consensus       282 ---~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         282 ---HKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             ---ccCCCHHHHHHHHHHhcCCcccCcCHHHHhcCCCC
Confidence               12567899999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.2e-41  Score=338.28  Aligned_cols=302  Identities=26%  Similarity=0.388  Sum_probs=230.0

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC----cCchhHHHHHHHHHHhcCCCCceEEecceEEe------
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA----NASKHYVSNELRMLERFGGKNFIIKYEGCFKC------  268 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~----~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~------  268 (728)
                      ..+.|+-..+||+|.||.||+|+.+.+|+.||+|++--    ........+|+.+|..+.|+| ++.++..|..      
T Consensus        15 ~~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHen-v~nliEic~tk~Tp~~   93 (376)
T KOG0669|consen   15 EVSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHEN-VVNLIEICRTKATPTN   93 (376)
T ss_pred             cchHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchh-HHHHHHHHhhccCCcc
Confidence            34578888899999999999999999999999997542    334456789999999999999 8888777653      


Q ss_pred             --CCeeEEEEeccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          269 --GDSDCFVLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       269 --~~~~~LV~E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                        ...+|+||.+|++++...+.   .+++..+++.++.+++.||.|+|+..|+|||+||+|+||+ .++.+||+|||+++
T Consensus        94 r~r~t~ylVf~~cehDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt-~dgilklADFGlar  172 (376)
T KOG0669|consen   94 RDRATFYLVFDFCEHDLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLIT-KDGILKLADFGLAR  172 (376)
T ss_pred             cccceeeeeHHHhhhhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEc-CCceEEeecccccc
Confidence              23589999999997766554   3599999999999999999999999999999999999999 66789999999997


Q ss_pred             cccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCc
Q 004835          344 VGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGI  423 (728)
Q Consensus       344 ~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~  423 (728)
                      ...                                                                             
T Consensus       173 ~fs-----------------------------------------------------------------------------  175 (376)
T KOG0669|consen  173 AFS-----------------------------------------------------------------------------  175 (376)
T ss_pred             cee-----------------------------------------------------------------------------
Confidence            411                                                                             


Q ss_pred             cccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccc
Q 004835          424 TSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAV  503 (728)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (728)
                                                                       +++                            
T Consensus       176 -------------------------------------------------~~~----------------------------  178 (376)
T KOG0669|consen  176 -------------------------------------------------TSK----------------------------  178 (376)
T ss_pred             -------------------------------------------------ccc----------------------------
Confidence                                                             000                            


Q ss_pred             ccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHH
Q 004835          504 AGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLL  583 (728)
Q Consensus       504 ~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~  583 (728)
                                                            .....+.+..|-|.+|++||.++|...|+++.|||.+|||+.
T Consensus       179 --------------------------------------n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCima  220 (376)
T KOG0669|consen  179 --------------------------------------NVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMA  220 (376)
T ss_pred             --------------------------------------ccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHH
Confidence                                                  111123456678999999999999999999999999999999


Q ss_pred             HHhcCCCCCCCCCh-HHHHHHHHHhCC--chHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchh
Q 004835          584 YLMIGRTPFFGDPE-QNIKDIAKLRGS--EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS  660 (728)
Q Consensus       584 eLltG~~PF~~~~~-~~l~~i~~~~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (728)
                      ||++|.+.|.+.++ +++..|-.+.|+  ++.|.-..-.        .++.....++..-....++...-..|  .-+++
T Consensus       221 eMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~l--------pL~~sie~ePl~~~~~rkv~n~~kp~--~kd~~  290 (376)
T KOG0669|consen  221 EMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNL--------PLYQSIELEPLPKGQKRKVKNRLKPY--VKDDE  290 (376)
T ss_pred             HHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccc--------hHHHhccCCCCCcchhhhhhhhcccc--cCChh
Confidence            99999999999887 578888888896  5555421100        12222222332222222221111111  22568


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCCccchhc-chHhHhhhcc
Q 004835          661 LFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEM-LRKQKLLRQG  704 (728)
Q Consensus       661 l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~-~~~~~~~~~~  704 (728)
                      +.||+.+||.+||.+|+++.++|+|.||..-+-+ ..-|.|+...
T Consensus       291 a~dLle~ll~~DP~kR~~ad~alnh~~F~kdp~pqanl~~ml~t~  335 (376)
T KOG0669|consen  291 ALDLLEKLLKLDPTKRIDADQALNHDFFWKDPMPQANLQDMLSTH  335 (376)
T ss_pred             HHHHHHHHhccCcccCcchHhhhchhhhhcCCcchhhHHHHHHHh
Confidence            9999999999999999999999999999865544 4445555443

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=9e-39  Score=348.15  Aligned_cols=285  Identities=25%  Similarity=0.359  Sum_probs=211.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeC------
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCG------  269 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~------  269 (728)
                      .++|++.+.||+|+||.||+|.+..+|+.||||++...    .....+.+|+.++++++|++ |++++++|...      
T Consensus        15 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKN-IIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCC-CcceeeeeccCCCcccc
Confidence            46899999999999999999999999999999998642    22345678999999999999 99999887643      


Q ss_pred             CeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          270 DSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      ...|+||||+.+++...+...++...+..++.||+.||+|||++||+||||||+|||++ .++.++|+|||++.......
T Consensus        94 ~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~-~~~~~kL~Dfg~~~~~~~~~  172 (353)
T cd07850          94 QDVYLVMELMDANLCQVIQMDLDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK-SDCTLKILDFGLARTAGTSF  172 (353)
T ss_pred             CcEEEEEeccCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEC-CCCCEEEccCccceeCCCCC
Confidence            35799999999877766666689999999999999999999999999999999999999 66679999999986411000


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (353)
T cd07850         173 --------------------------------------------------------------------------------  172 (353)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (353)
T cd07850         173 --------------------------------------------------------------------------------  172 (353)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                           ......||..|+|||++.+.. ++.++|||||||++|+|++|+
T Consensus       173 -------------------------------------~~~~~~~~~~y~aPE~~~~~~-~~~~~DvwslG~~l~~l~~g~  214 (353)
T cd07850         173 -------------------------------------MMTPYVVTRYYRAPEVILGMG-YKENVDIWSVGCIMGEMIRGT  214 (353)
T ss_pred             -------------------------------------CCCCCcccccccCHHHHhCCC-CCCchhhHhHHHHHHHHHHCC
Confidence                                                 001235788999999996655 699999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhc------cCCcccccCchhHH
Q 004835          590 TPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLIT------KRPDFLEVIPSSLF  662 (728)
Q Consensus       590 ~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~  662 (728)
                      .||.+.+. .....++..+|.+...-...+......+...      .+......+.+...      .........++.+.
T Consensus       215 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (353)
T cd07850         215 VLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVEN------RPKYAGYSFEELFPDVLFPPDSESHNKLKASQAR  288 (353)
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhc------CCCCCCcchhhhCcccccCcccccccccchhHHH
Confidence            99987664 5677777777764321111110000000000      00000000111000      00011234567899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCcc
Q 004835          663 DLVDKCLTVNPRLRISAEDALKHEFFAP  690 (728)
Q Consensus       663 dLi~~~L~~dP~~Rpta~e~L~Hp~f~~  690 (728)
                      +||.+||.+||++|||+.|+|+||||+.
T Consensus       289 ~li~~~L~~dP~~R~t~~eiL~~~~~~~  316 (353)
T cd07850         289 DLLSKMLVIDPEKRISVDDALQHPYINV  316 (353)
T ss_pred             HHHHHHcCCChhhCcCHHHHhcChhHhh
Confidence            9999999999999999999999999973

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-40  Score=349.09  Aligned_cols=308  Identities=23%  Similarity=0.330  Sum_probs=224.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCC-----CCceEEecceEEeCCeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGG-----KNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h-----~n~Ivkl~~~~~~~~~~~  273 (728)
                      .++|.+...+|+|+||.|..+.+..++..||||+++.- .-.+...-|+.+|+++.+     .+.++++.++|...++.|
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiC  167 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHIC  167 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceE
Confidence            46899999999999999999999999999999999754 334556679999999943     346899999999999999


Q ss_pred             EEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecc-ccccCC
Q 004835          274 FVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA-MVGFDG  348 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA-~~~~~~  348 (728)
                      ||+|.++..+.+.+..    .++...++.+++|++++++|||+.+++|-||||+|||+.+.. ..++-+-+.. ..    
T Consensus       168 ivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~-~~~~~~~k~~~~~----  242 (415)
T KOG0671|consen  168 IVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSE-YFKTYNPKKKVCF----  242 (415)
T ss_pred             EEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccc-eEEEeccCCccce----
Confidence            9999999887777754    389999999999999999999999999999999999997332 2333222221 00    


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                   .+..........|||++.+..              
T Consensus       243 ---------------------------------------------~r~~ks~~I~vIDFGsAtf~~--------------  263 (415)
T KOG0671|consen  243 ---------------------------------------------IRPLKSTAIKVIDFGSATFDH--------------  263 (415)
T ss_pred             ---------------------------------------------eccCCCcceEEEecCCcceec--------------
Confidence                                                         000011223467888876532              


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       264 --------------------------------------------------------------------------------  263 (415)
T KOG0671|consen  264 --------------------------------------------------------------------------------  263 (415)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                           ......|.|..|||||++++-++ +.++||||+||||+||.+|
T Consensus       264 -------------------------------------e~hs~iVsTRHYRAPEViLgLGw-S~pCDvWSiGCIL~ElytG  305 (415)
T KOG0671|consen  264 -------------------------------------EHHSTIVSTRHYRAPEVILGLGW-SQPCDVWSIGCILVELYTG  305 (415)
T ss_pred             -------------------------------------cCcceeeeccccCCchheeccCc-CCccCceeeeeEEEEeecc
Confidence                                                 11246678999999999999887 9999999999999999999


Q ss_pred             CCCCCCCC-hHHHHHHHHHhCCchHHHHHHh------ccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhH
Q 004835          589 RTPFFGDP-EQNIKDIAKLRGSEDLWEVAKL------HNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL  661 (728)
Q Consensus       589 ~~PF~~~~-~~~l~~i~~~~G~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  661 (728)
                      ...|++.+ .+++..+-..+|+.+.-.+.+.      ......|++.-.....   ......|+.+.....-.+....++
T Consensus       306 ~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~---k~v~~~ckpl~~~~~~~d~e~~~L  382 (415)
T KOG0671|consen  306 ETLFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKS---KYVFEPCKPLKKYMLQDDLEHVQL  382 (415)
T ss_pred             ceecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccc---hhhhcCCccHHHHhccCcHHHhHH
Confidence            99998754 4889888889997554444333      1113333332111100   000011111110001112233569


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCccch
Q 004835          662 FDLVDKCLTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       662 ~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      +|||++||.+||.+|+|+.|||.||||+...
T Consensus       383 fDLl~~mL~fDP~~RiTl~EAL~HpFF~~~~  413 (415)
T KOG0671|consen  383 FDLLRRMLEFDPARRITLREALSHPFFARLT  413 (415)
T ss_pred             HHHHHHHHccCccccccHHHHhcCHHhhcCC
Confidence            9999999999999999999999999999754

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-38  Score=334.00  Aligned_cols=143  Identities=27%  Similarity=0.436  Sum_probs=125.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +++|++.+.||.|+||.||+|.+..+++.||||.+....   ....+.+|+.+++.++|++ |+++++++...+..|+||
T Consensus         4 ~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~   82 (291)
T cd07844           4 LETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHAN-IVTLHDIIHTKKTLTLVF   82 (291)
T ss_pred             ccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcc-eeeEEEEEecCCeEEEEE
Confidence            578999999999999999999999899999999986432   2345678999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.+++...+.+   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.++|+|||+++.
T Consensus        83 e~~~~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~-~~~~~kl~dfg~~~~  152 (291)
T cd07844          83 EYLDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLIS-ERGELKLADFGLARA  152 (291)
T ss_pred             ecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEc-CCCCEEECccccccc
Confidence            9999755444432   378899999999999999999999999999999999999 667799999999863

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=1.7e-38  Score=333.18  Aligned_cols=272  Identities=29%  Similarity=0.411  Sum_probs=209.6

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +|++.+.||.|+||.||+|++..+|+.||||.+....    ....+.+|+.++++++|+| |+++++++..++..++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~~v~e   79 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN-IVKLLDVIHTENKLYLVFE   79 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCC-CcchhhhcccCCcEEEEee
Confidence            4899999999999999999999899999999886432    2346788999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHh----hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          278 HVKHDRPEVLK----KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       278 ~~~~~~l~~l~----~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      |+.+++...+.    ..+++..+..++.|++.||+|||+.||+||||+|+||+++ .++.++|+|||++.......    
T Consensus        80 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~-~~~~~~l~dfg~~~~~~~~~----  154 (284)
T cd07860          80 FLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLIN-TEGAIKLADFGLARAFGVPV----  154 (284)
T ss_pred             ccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEC-CCCCEEEeeccchhhcccCc----
Confidence            99765444332    2378899999999999999999999999999999999999 66789999999986311000    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (284)
T cd07860         155 --------------------------------------------------------------------------------  154 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (284)
T cd07860         155 --------------------------------------------------------------------------------  154 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                      .......++..|+|||++.+...++.++|||||||++|+|++|..||.
T Consensus       155 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~  202 (284)
T cd07860         155 --------------------------------RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFP  202 (284)
T ss_pred             --------------------------------cccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                                            000122467889999998666656889999999999999999999998


Q ss_pred             CCCh-HHHHHHHHHhCCchHHHHHH---hccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          594 GDPE-QNIKDIAKLRGSEDLWEVAK---LHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       594 ~~~~-~~l~~i~~~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      +.+. ..+..+++.+|.+.......   +......|+.          .....+.       .....++..+.+||.+||
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-------~~~~~~~~~~~~li~~~l  265 (284)
T cd07860         203 GDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPK----------WARQDFS-------KVVPPLDEDGRDLLSQML  265 (284)
T ss_pred             CCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhccc----------ccccCHH-------HHcccCCHHHHHHHHHhc
Confidence            8765 56777777777643221110   1000001110          0000110       112356788999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCC
Q 004835          670 TVNPRLRISAEDALKHEFF  688 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f  688 (728)
                      ..||++|||++++|+||||
T Consensus       266 ~~~P~~Rpt~~~~l~~~~f  284 (284)
T cd07860         266 HYDPNKRISAKAALAHPFF  284 (284)
T ss_pred             CCCcccCCCHHHHhcCCCC
Confidence            9999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=1.1e-38  Score=339.95  Aligned_cols=287  Identities=25%  Similarity=0.309  Sum_probs=214.0

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeC--Cee
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCG--DSD  272 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~--~~~  272 (728)
                      .+++|++.+.||.|+||.||+|.+..+|+.||+|.+.....    ...+.+|+.++++++|++ |+++++++...  +..
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~~   83 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPN-IVELKEVVVGKHLDSI   83 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCC-CcceEEEEecCCCCeE
Confidence            46789999999999999999999999999999999864321    234568999999999999 99999988654  568


Q ss_pred             EEEEeccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |+||||+.+++...+.   ..+++..+..++.||+.||+|||+.||+||||||+||+++ +.+.++|+|||++.......
T Consensus        84 ~lv~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~-~~~~~kL~dfg~~~~~~~~~  162 (309)
T cd07845          84 FLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLT-DKGCLKIADFGLARTYGLPA  162 (309)
T ss_pred             EEEEecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEC-CCCCEEECccceeeecCCcc
Confidence            9999999876554443   2388999999999999999999999999999999999999 66789999999986421000


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (309)
T cd07845         163 --------------------------------------------------------------------------------  162 (309)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (309)
T cd07845         163 --------------------------------------------------------------------------------  162 (309)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                          .......+++.|+|||++.+...++.++|||||||++|+|++|.
T Consensus       163 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~  206 (309)
T cd07845         163 ------------------------------------KPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHK  206 (309)
T ss_pred             ------------------------------------CCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCC
Confidence                                                00012245788999999977666799999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          590 TPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       590 ~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      +||.+.+. +.+..+....|.+............    .  ......+......+..       .....++.+.+||.+|
T Consensus       207 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~-------~~~~~~~~~~~li~~m  273 (309)
T cd07845         207 PLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLP----L--VGKFTLPKQPYNNLKH-------KFPWLSEAGLRLLNFL  273 (309)
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCChhhchhhhccc----c--cccccccCCCCCchHH-------hccccCHHHHHHHHHH
Confidence            99988766 4566666666654322111110000    0  0000001111111110       1123578899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCccchhcch
Q 004835          669 LTVNPRLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      |.+||++|||++++|+||||+......+
T Consensus       274 l~~dp~~R~t~~~il~h~~f~~~~~~~~  301 (309)
T cd07845         274 LMYDPKKRATAEEALESSYFKEKPLPCE  301 (309)
T ss_pred             hcCChhhCcCHHHHhcChhhccCCCCCC
Confidence            9999999999999999999987655544

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=2.5e-38  Score=333.68  Aligned_cols=278  Identities=27%  Similarity=0.378  Sum_probs=207.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCe-----
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-----  271 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~-----  271 (728)
                      ++|++.+.||+|+||.||+|.+..+|+.||||++....    ....+.+|+.++..+.|+++|+++++++.....     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            47999999999999999999999999999999876432    234677899999999764349999999887665     


Q ss_pred             eEEEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .|+||||+++++...+..       .+++..++.++.||+.||.|||++||+||||||+||+++.+++.++|+|||++..
T Consensus        81 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~  160 (295)
T cd07837          81 LYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRA  160 (295)
T ss_pred             EEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeeccccee
Confidence            899999999865554432       2688999999999999999999999999999999999995478899999999863


Q ss_pred             ccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcc
Q 004835          345 GFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGIT  424 (728)
Q Consensus       345 ~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~  424 (728)
                      .....                                                                           
T Consensus       161 ~~~~~---------------------------------------------------------------------------  165 (295)
T cd07837         161 FSIPV---------------------------------------------------------------------------  165 (295)
T ss_pred             cCCCc---------------------------------------------------------------------------
Confidence            10000                                                                           


Q ss_pred             ccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccc
Q 004835          425 SAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVA  504 (728)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (728)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (295)
T cd07837         166 --------------------------------------------------------------------------------  165 (295)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHH
Q 004835          505 GAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLY  584 (728)
Q Consensus       505 ~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~e  584 (728)
                                                               .......+++.|+|||++.+...++.++|||||||++|+
T Consensus       166 -----------------------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~  204 (295)
T cd07837         166 -----------------------------------------KSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAE  204 (295)
T ss_pred             -----------------------------------------cccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHH
Confidence                                                     000122467889999998776667899999999999999


Q ss_pred             HhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHH
Q 004835          585 LMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD  663 (728)
Q Consensus       585 LltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d  663 (728)
                      |++|..||.+.+. ..+..+++..+.+............    .    ....+......       .......++..+.+
T Consensus       205 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~-------~~~~~~~~~~~~~~  269 (295)
T cd07837         205 MSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLR----D----WHEFPQWKPQD-------LSRAVPDLSPEGLD  269 (295)
T ss_pred             HHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhcc----c----hhhcCcccchh-------HHHhccccCHHHHH
Confidence            9999999988665 5566666665543221100000000    0    00000000000       00112357889999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCc
Q 004835          664 LVDKCLTVNPRLRISAEDALKHEFFA  689 (728)
Q Consensus       664 Li~~~L~~dP~~Rpta~e~L~Hp~f~  689 (728)
                      ||.+||..||.+|||+.|+|.||||.
T Consensus       270 ~i~~~l~~~P~~R~~~~eil~~~~~~  295 (295)
T cd07837         270 LLQKMLRYDPAKRISAKAALTHPYFD  295 (295)
T ss_pred             HHHHHccCChhhcCCHHHHhcCCCcC
Confidence            99999999999999999999999995

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=6.9e-40  Score=345.41  Aligned_cols=247  Identities=26%  Similarity=0.356  Sum_probs=213.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      .+|++.+.||+|+||.|-+|.....|+.||||.+++...     .-.+.+||+|++.|+||+ |+.+|.+|++.+.+.||
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPh-II~IyEVFENkdKIviv  131 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPH-IIQIYEVFENKDKIVIV  131 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCc-eeehhhhhcCCceEEEE
Confidence            479999999999999999999988999999999876532     345789999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |||..+|.|..++.   .+++.+++.+++||+.|+.|+|.++++|||||.+|||+| .++++||+|||++....+.    
T Consensus       132 MEYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD-~N~NiKIADFGLSNly~~~----  206 (668)
T KOG0611|consen  132 MEYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLD-QNNNIKIADFGLSNLYADK----  206 (668)
T ss_pred             EEecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccceecccchhheeec-CCCCeeeeccchhhhhccc----
Confidence            99999998887764   499999999999999999999999999999999999999 7788999999999752211    


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (668)
T KOG0611|consen  207 --------------------------------------------------------------------------------  206 (668)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (668)
T KOG0611|consen  207 --------------------------------------------------------------------------------  206 (668)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                       +..+.+||+|-|.+||++-|.++-++.+|-|||||+||.|+.|..||
T Consensus       207 ---------------------------------kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPF  253 (668)
T KOG0611|consen  207 ---------------------------------KFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPF  253 (668)
T ss_pred             ---------------------------------cHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhccccc
Confidence                                             11236789999999999988888899999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       593 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      .|.+...+...+. .|               .|                           +-..-|..+.-||+.||.+|
T Consensus       254 DG~Dhk~lvrQIs-~G---------------aY---------------------------rEP~~PSdA~gLIRwmLmVN  290 (668)
T KOG0611|consen  254 DGRDHKRLVRQIS-RG---------------AY---------------------------REPETPSDASGLIRWMLMVN  290 (668)
T ss_pred             CCchHHHHHHHhh-cc---------------cc---------------------------cCCCCCchHHHHHHHHHhcC
Confidence            9988766555442 11               00                           11234678889999999999


Q ss_pred             CCCCCCHHHHhcCCCCc
Q 004835          673 PRLRISAEDALKHEFFA  689 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~  689 (728)
                      |++|.|++++-.|=|..
T Consensus       291 P~RRATieDiAsHWWvN  307 (668)
T KOG0611|consen  291 PERRATIEDIASHWWVN  307 (668)
T ss_pred             cccchhHHHHhhhheee
Confidence            99999999999998875

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=4.3e-38  Score=329.55  Aligned_cols=277  Identities=23%  Similarity=0.382  Sum_probs=211.8

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +|++.+.||.|+||.||+|.+..+|+.||+|++....    ....+.+|+.+++++.|++ |+++++++..+...|+|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~~~~~~~v~e   79 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPY-VVKLLDVFPHGSGFVLVME   79 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCC-CcceeeEEecCCeeEEEec
Confidence            5899999999999999999999899999999987432    2456889999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          278 HVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       278 ~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      |+ ++.+..+..    .+++..++.++.||+.||+|||+.||+|+||||+||+++ ..+.++|+|||++.......    
T Consensus        80 ~~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~-~~~~~~l~dfg~~~~~~~~~----  153 (286)
T cd07832          80 YM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLIS-ADGVLKIADFGLARLFSEEE----  153 (286)
T ss_pred             cc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEc-CCCcEEEeeeeecccccCCC----
Confidence            99 766665542    378999999999999999999999999999999999999 56779999999986421000    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (286)
T cd07832         154 --------------------------------------------------------------------------------  153 (286)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (286)
T cd07832         154 --------------------------------------------------------------------------------  153 (286)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                     ........||..|+|||++.+...++.++||||+||++|+|++|.+||.
T Consensus       154 -------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~  202 (286)
T cd07832         154 -------------------------------PRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFP  202 (286)
T ss_pred             -------------------------------CCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcC
Confidence                                           0001123588899999998766667899999999999999999988887


Q ss_pred             CCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          594 GDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       594 ~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      +... ..+..++...+.+........... ..+     .....+......|.       .....++..+.+||.+||..|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~l~~~  269 (286)
T cd07832         203 GENDIEQLAIVFRTLGTPNEETWPGLTSL-PDY-----NKITFPESKPIPLE-------EIFPDASPEALDLLKGLLVYD  269 (286)
T ss_pred             CCCHHHHHHHHHHHcCCCChHHHhhccCc-chh-----hcccCCCCCcchHH-------HhCCCccHHHHHHHHHHhccC
Confidence            7665 556666766665432221111000 000     00000111111111       122456789999999999999


Q ss_pred             CCCCCCHHHHhcCCCCc
Q 004835          673 PRLRISAEDALKHEFFA  689 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~  689 (728)
                      |++|||++++|+||||.
T Consensus       270 p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         270 PSKRLSAAEALRHPYFT  286 (286)
T ss_pred             hhhCCCHHHHhhCcCcC
Confidence            99999999999999994

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.8e-38  Score=360.88  Aligned_cols=145  Identities=21%  Similarity=0.228  Sum_probs=126.7

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCC-CeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKND-GTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~-g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +....|.+.+.||+|+||.||+|....+ +..||+|.+....  ....+.+|+.+|..++|+| |+++++++..++..||
T Consensus        64 ~~~~~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpn-iv~~~~~~~~~~~~~l  142 (478)
T PTZ00267         64 PREHMYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFG-IVKHFDDFKSDDKLLL  142 (478)
T ss_pred             CcceeEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCC-EeEEEEEEEECCEEEE
Confidence            3455699999999999999999998877 7889999765432  2345778999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.+++|.....       .+++..+..++.||+.||.|||++||+||||||+||||+ ..+.+||+|||+++.
T Consensus       143 v~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~~kL~DFgla~~  218 (478)
T PTZ00267        143 IMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLM-PTGIIKLGDFGFSKQ  218 (478)
T ss_pred             EEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEEC-CCCcEEEEeCcCcee
Confidence            999999998865432       278889999999999999999999999999999999999 667899999999874

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=1.5e-38  Score=342.61  Aligned_cols=137  Identities=24%  Similarity=0.300  Sum_probs=120.8

Q ss_pred             EEEEeccc--CceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          205 VEEEEGSG--GYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       205 i~~~LG~G--~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ++++||+|  +||+||++.+..+|+.||||.+....    ....+.+|+.+++.++|+| |+++++++..++..|+||||
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpn-iv~~~~~~~~~~~~~lv~e~   80 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPN-IVPYRATFIADNELWVVTSF   80 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCC-eeeEEEEEEECCEEEEEEec
Confidence            46789999  78999999999999999999987542    2345778999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          279 VKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       279 ~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      +.++++..+..     .+++..++.++.||+.||+|||++||+||||||+|||++ .++.++++|||.+.
T Consensus        81 ~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~-~~~~~~l~~~~~~~  149 (327)
T cd08227          81 MAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHILIS-VDGKVYLSGLRSNL  149 (327)
T ss_pred             cCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEe-cCCcEEEcccchhh
Confidence            99988876652     378899999999999999999999999999999999999 66678999998754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=2.3e-38  Score=332.02  Aligned_cols=142  Identities=30%  Similarity=0.462  Sum_probs=127.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++....    ....+.+|+.+++.++|++ |+++++++..+...|+||
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~   79 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHEN-LVNLIEVFRRKKRLYLVF   79 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcc-hhhHHHhcccCCeEEEEE
Confidence            47999999999999999999998889999999876432    2345778999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.++++..+..   .+++..++.++.||+.||+|||+.||+||||+|+||+++ +++.++|+|||++..
T Consensus        80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~-~~~~~~l~dfg~~~~  149 (286)
T cd07846          80 EFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVS-QSGVVKLCDFGFART  149 (286)
T ss_pred             ecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEC-CCCcEEEEeeeeeee
Confidence            9999998877653   388999999999999999999999999999999999998 667899999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=4.5e-38  Score=328.77  Aligned_cols=271  Identities=26%  Similarity=0.416  Sum_probs=207.1

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcC-CCCceEEecceEEeC--CeeEEEE
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFG-GKNFIIKYEGCFKCG--DSDCFVL  276 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~--~~~~LV~  276 (728)
                      |++.+.||+|+||.||+|.+..+++.||+|++....   ......+|+.++.++. |+| |+++++++.++  +..++||
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~-i~~~~~~~~~~~~~~~~lv~   79 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPN-ILRLIEVLFDRKTGRLALVF   79 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCC-ccceEEEEecCCCCcEEEEE
Confidence            778999999999999999999999999999886532   2223457889999886 777 99999999887  8899999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      ||+.++++..+..   .+++..+..++.||+.||.|||+.||+||||||+||+++.  +.++|+|||++.......    
T Consensus        80 e~~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~--~~~kl~dfg~~~~~~~~~----  153 (282)
T cd07831          80 ELMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD--DILKLADFGSCRGIYSKP----  153 (282)
T ss_pred             ecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC--CCeEEEecccccccccCC----
Confidence            9999877766653   3789999999999999999999999999999999999994  789999999986411000    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (282)
T cd07831         154 --------------------------------------------------------------------------------  153 (282)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (282)
T cd07831         154 --------------------------------------------------------------------------------  153 (282)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                       ......+|..|+|||++.....++.++||||+||++|||++|.+||.
T Consensus       154 ---------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~  200 (282)
T cd07831         154 ---------------------------------PYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFP  200 (282)
T ss_pred             ---------------------------------CcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCC
Confidence                                             00123468889999988666667899999999999999999999998


Q ss_pred             CCCh-HHHHHHHHHhCCchHHHHHHhccCC-CCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          594 GDPE-QNIKDIAKLRGSEDLWEVAKLHNRE-SSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       594 ~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      +.+. +.+..+....|.+............ ..+        .++.......       ......++..+.+||.+||.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-------~~~~~~~~~~~~~li~~~l~~  265 (282)
T cd07831         201 GTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNY--------NFPSKKGTGL-------RKLLPNASAEGLDLLKKLLAY  265 (282)
T ss_pred             CCCHHHHHHHHHHHcCCCCHHHHHhhcccccccc--------cCcccccccH-------HHHcccccHHHHHHHHHHhcc
Confidence            8765 4566667777753321121111110 000        0000000000       011235689999999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 004835          672 NPRLRISAEDALKHEFF  688 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f  688 (728)
                      ||++|||++++|+||||
T Consensus       266 ~P~~R~~~~~~l~~~~~  282 (282)
T cd07831         266 DPDERITAKQALRHPYF  282 (282)
T ss_pred             CcccccCHHHHhhCCCC
Confidence            99999999999999998

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=3.5e-38  Score=340.93  Aligned_cols=286  Identities=27%  Similarity=0.397  Sum_probs=213.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeC-----Cee
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCG-----DSD  272 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~-----~~~  272 (728)
                      ++|++.+.||+|+||.||+|.+..+|+.||||++...   .....+.+|+.++++++|+| |+++++++...     ...
T Consensus         5 ~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           5 PRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHEN-IIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             cceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCC-cCchhheeecccccccceE
Confidence            6899999999999999999999999999999998632   22345778999999999999 99998876543     357


Q ss_pred             EEEEeccCCCChHHHhh-cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          273 CFVLEHVKHDRPEVLKK-EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      |+|+||+.+.+...+.. .+++..++.++.||+.||.|||+.||+||||||+|||++ .++.++|+|||++........ 
T Consensus        84 ~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~-~~~~~kl~dfg~~~~~~~~~~-  161 (336)
T cd07849          84 YIVQELMETDLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLN-TNCDLKICDFGLARIADPEHD-  161 (336)
T ss_pred             EEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEC-CCCCEEECcccceeecccccc-
Confidence            99999999865554443 489999999999999999999999999999999999999 667899999999864210000 


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (336)
T cd07849         162 --------------------------------------------------------------------------------  161 (336)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (336)
T cd07849         162 --------------------------------------------------------------------------------  161 (336)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                      .........||+.|+|||++.+...++.++||||+||++|+|++|+.|
T Consensus       162 --------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~  209 (336)
T cd07849         162 --------------------------------HTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPL  209 (336)
T ss_pred             --------------------------------ccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence                                            000011346899999999986655578999999999999999999999


Q ss_pred             CCCCCh-HHHHHHHHHhCCchHHHHHHhccCC-CCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          592 FFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRE-SSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       592 F~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      |.+.+. ..+..+...+|.+.......+.... ..|.      ...+......|.       .....++.++.+||.+||
T Consensus       210 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~l  276 (336)
T cd07849         210 FPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYI------KSLPFKPKVPWN-------KLFPNADPKALDLLDKML  276 (336)
T ss_pred             CCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHH------hhcCcCCcccHH-------HHhcccCcHHHHHHHHHc
Confidence            987654 4566666667754332221111100 0000      000000011111       012345788999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchhc
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      ..||++|||+.|+++||||+.....
T Consensus       277 ~~dP~~Rpt~~e~l~hp~~~~~~~~  301 (336)
T cd07849         277 TFNPHKRITVEEALAHPYLEQYHDP  301 (336)
T ss_pred             CCChhhCcCHHHHhcCccccccCCC
Confidence            9999999999999999999988764

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4e-38  Score=325.80  Aligned_cols=142  Identities=22%  Similarity=0.322  Sum_probs=126.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-------chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ++|.+.+.||+|+||.||+|.+..+++.||+|.+....       ....+.+|+.++++++|++ |+++++++......+
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~   80 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHER-IVQYYGCLRDDETLS   80 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCC-eeeeEEEEccCCeEE
Confidence            47999999999999999999998899999999876431       1235778999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +|+||++++.+..+..   .+++..++.++.|++.||.|||+.||+||||||+||+++ .++.++|+|||++..
T Consensus        81 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~-~~~~~~l~dfg~~~~  153 (263)
T cd06625          81 IFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRD-SAGNVKLGDFGASKR  153 (263)
T ss_pred             EEEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEc-CCCCEEEeeccccee
Confidence            9999999988766553   378889999999999999999999999999999999999 667899999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=2.7e-38  Score=333.85  Aligned_cols=280  Identities=28%  Similarity=0.384  Sum_probs=210.7

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeC--Cee
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCG--DSD  272 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~--~~~  272 (728)
                      ++++|++.+.||.|+||.||+|.+..+++.||+|.+.....    ...+.+|+.++.++.|+| |+++++++...  ...
T Consensus         3 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~n-i~~~~~~~~~~~~~~~   81 (293)
T cd07843           3 SVDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPN-IVTVKEVVVGSNLDKI   81 (293)
T ss_pred             chhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCC-EEEEEEEEEecCCCcE
Confidence            34689999999999999999999998999999999864322    234568999999999999 99999988877  899


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |+||||+.+.+...+..   .+++..++.++.||+.||+|||++||+||||||+|||++ .++.++|+|||++.......
T Consensus        82 ~lv~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~-~~~~~~l~d~g~~~~~~~~~  160 (293)
T cd07843          82 YMVMEYVEHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLN-NRGILKICDFGLAREYGSPL  160 (293)
T ss_pred             EEEehhcCcCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEEC-CCCcEEEeecCceeeccCCc
Confidence            99999999744444332   388999999999999999999999999999999999999 66789999999986411000


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (293)
T cd07843         161 --------------------------------------------------------------------------------  160 (293)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (293)
T cd07843         161 --------------------------------------------------------------------------------  160 (293)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                          .......+++.|+|||++.+...++.++|||||||++|+|++|.
T Consensus       161 ------------------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~  204 (293)
T cd07843         161 ------------------------------------KPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKK  204 (293)
T ss_pred             ------------------------------------cccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCC
Confidence                                                00012346788999999876666789999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCccccc-CchhHHHHHHH
Q 004835          590 TPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEV-IPSSLFDLVDK  667 (728)
Q Consensus       590 ~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~dLi~~  667 (728)
                      +||.+.+. +.+..++...|.+............. ...     .........      .....++.. +++.+.+||.+
T Consensus       205 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~------~~~~~~~~~~~~~~~~~li~~  272 (293)
T cd07843         205 PLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPG-AKK-----KTFTKYPYN------QLRKKFPALSLSDNGFDLLNR  272 (293)
T ss_pred             CCCCCCChHHHHHHHHHHhCCCchHHHHHhhccch-hcc-----cccccccch------hhhccccccCCChHHHHHHHH
Confidence            99987665 45666677676533222111110000 000     000000000      012223333 68899999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCC
Q 004835          668 CLTVNPRLRISAEDALKHEFF  688 (728)
Q Consensus       668 ~L~~dP~~Rpta~e~L~Hp~f  688 (728)
                      ||..||++|||+.|+|.||||
T Consensus       273 ~l~~~p~~R~t~~ell~~~~f  293 (293)
T cd07843         273 LLTYDPAKRISAEDALKHPYF  293 (293)
T ss_pred             HhccCccccCCHHHHhcCCCC
Confidence            999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=4e-38  Score=332.67  Aligned_cols=142  Identities=25%  Similarity=0.374  Sum_probs=127.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      +.|++.++||.|+||.||+|++..+++.||+|++....  ....+.+|+.+++.+.|++ |+++++++......|+||||
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~   90 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPY-IVKLLGAFYWDGKLWIMIEF   90 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCc-EeeeEEEEEeCCeEEEEEec
Confidence            67999999999999999999999999999999987543  2355778999999999999 99999999999999999999


Q ss_pred             cCCCChHHHh----hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLK----KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~----~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++++..+.    ..+++..+..++.||+.||.|||++||+||||||+||+++ .++.++|+|||++..
T Consensus        91 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~-~~~~~kl~dfg~~~~  159 (292)
T cd06644          91 CPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLT-LDGDIKLADFGVSAK  159 (292)
T ss_pred             CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEc-CCCCEEEccCcccee
Confidence            9999887654    2378999999999999999999999999999999999998 667899999998753

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=4.6e-38  Score=329.69  Aligned_cols=279  Identities=26%  Similarity=0.422  Sum_probs=214.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ++|++.+.||+|+||.||+|.+..+++.||+|.+...    .....+.+|+.+++++.|++ |+++++++..++..|+||
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~iv~   79 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHEN-IVNLKEAFRRKGRLYLVF   79 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCC-eeehhheEEECCEEEEEE
Confidence            4799999999999999999999989999999988643    23456889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          277 EHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       277 E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      ||++++++..+...   +++..+..++.||+.||.|||.+||+||||+|+||+++ +++.++|+|||++........   
T Consensus        80 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~-~~~~~kl~d~g~~~~~~~~~~---  155 (288)
T cd07833          80 EYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVS-ESGVLKLCDFGFARALRARPA---  155 (288)
T ss_pred             ecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEC-CCCCEEEEeeecccccCCCcc---
Confidence            99999888766543   88999999999999999999999999999999999999 677899999999864210000   


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (288)
T cd07833         156 --------------------------------------------------------------------------------  155 (288)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (288)
T cd07833         156 --------------------------------------------------------------------------------  155 (288)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                      ......+|+..|+|||++.+...++.++|||||||++|+|++|.+||.
T Consensus       156 --------------------------------~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~  203 (288)
T cd07833         156 --------------------------------SPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFP  203 (288)
T ss_pred             --------------------------------ccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCC
Confidence                                            001134578899999999766467999999999999999999999998


Q ss_pred             CCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCC-chhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          594 GDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPIN-LPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       594 ~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      +... +.+..+....|........... ....+     .....+... ...+      ...++..++..+.+||.+||..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~li~~~l~~  271 (288)
T cd07833         204 GDSDIDQLYLIQKCLGPLPPSHQELFS-SNPRF-----AGVAFPEPSQPESL------ERRYPGKVSSPALDFLKACLRM  271 (288)
T ss_pred             CCCHHHHHHHHHHHhCCCCHHHhhhcc-cCccc-----cccccCCCCCcHHH------HHhcCCccchHHHHHHHHHhcc
Confidence            7654 4555555555542221111110 00000     000111111 1111      1123445689999999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 004835          672 NPRLRISAEDALKHEFF  688 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f  688 (728)
                      +|++|||++++++||||
T Consensus       272 ~p~~Rps~~~il~~~~f  288 (288)
T cd07833         272 DPKERLTCDELLQHPYF  288 (288)
T ss_pred             CchhcccHHHHhcCCCC
Confidence            99999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=3.4e-38  Score=360.19  Aligned_cols=257  Identities=22%  Similarity=0.259  Sum_probs=204.8

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCC----
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD----  270 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~----  270 (728)
                      ..++|.+.+.||+|+||+||+|++..+|+.||||++....    ....+.+|+.++..+.|++ |++++..+...+    
T Consensus        30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~-iv~~~~~~~~~~~~~~  108 (496)
T PTZ00283         30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFS-IVKCHEDFAKKDPRNP  108 (496)
T ss_pred             cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCc-EEEeecceecccccCc
Confidence            4579999999999999999999999999999999986432    2345778999999999999 888877665332    


Q ss_pred             ----eeEEEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEee
Q 004835          271 ----SDCFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDF  339 (728)
Q Consensus       271 ----~~~LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DF  339 (728)
                          .+++||||+.++.|..++.       .+++..+..++.|++.||.|||++||+||||||+||||+ .++.+||+||
T Consensus       109 ~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~-~~~~vkL~DF  187 (496)
T PTZ00283        109 ENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLC-SNGLVKLGDF  187 (496)
T ss_pred             ccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEe-CCCCEEEEec
Confidence                3689999999988876542       378889999999999999999999999999999999999 6678999999


Q ss_pred             eccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCC
Q 004835          340 NLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGAD  419 (728)
Q Consensus       340 GlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~  419 (728)
                      |+++.......                                                                     
T Consensus       188 Gls~~~~~~~~---------------------------------------------------------------------  198 (496)
T PTZ00283        188 GFSKMYAATVS---------------------------------------------------------------------  198 (496)
T ss_pred             ccCeecccccc---------------------------------------------------------------------
Confidence            99874210000                                                                     


Q ss_pred             CCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCC
Q 004835          420 GSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSN  499 (728)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  499 (728)
                                                                                                      
T Consensus       199 --------------------------------------------------------------------------------  198 (496)
T PTZ00283        199 --------------------------------------------------------------------------------  198 (496)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHH
Q 004835          500 GIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAG  579 (728)
Q Consensus       500 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG  579 (728)
                                                                   .......+||+.|+|||++.+.. ++.++||||||
T Consensus       199 ---------------------------------------------~~~~~~~~Gt~~Y~aPE~~~~~~-~s~k~DVwSlG  232 (496)
T PTZ00283        199 ---------------------------------------------DDVGRTFCGTPYYVAPEIWRRKP-YSKKADMFSLG  232 (496)
T ss_pred             ---------------------------------------------ccccccccCCcceeCHHHhCCCC-CCcHHHHHHHH
Confidence                                                         00011346899999999996544 69999999999


Q ss_pred             HHHHHHhcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCch
Q 004835          580 VTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS  659 (728)
Q Consensus       580 ~il~eLltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (728)
                      |++|||++|+.||.+.+...+..... .|                                        ....++..+++
T Consensus       233 vilyeLltG~~Pf~~~~~~~~~~~~~-~~----------------------------------------~~~~~~~~~~~  271 (496)
T PTZ00283        233 VLLYELLTLKRPFDGENMEEVMHKTL-AG----------------------------------------RYDPLPPSISP  271 (496)
T ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHh-cC----------------------------------------CCCCCCCCCCH
Confidence            99999999999998776544322110 00                                        01123345788


Q ss_pred             hHHHHHHHhcccCCCCCCCHHHHhcCCCCccchh
Q 004835          660 SLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       660 ~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      ++.+||.+||..||.+||++.++|+|||++....
T Consensus       272 ~l~~li~~~L~~dP~~RPs~~ell~~p~~~~~~~  305 (496)
T PTZ00283        272 EMQEIVTALLSSDPKRRPSSSKLLNMPICKLFIS  305 (496)
T ss_pred             HHHHHHHHHcccChhhCcCHHHHHhCHHHHHhhh
Confidence            9999999999999999999999999999886544

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=2.2e-38  Score=326.29  Aligned_cols=140  Identities=30%  Similarity=0.474  Sum_probs=125.5

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchh----HHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH----YVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~----~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      |++++.||+|+||+||+|++..+++.||+|++.......    ...+|+.+++++.|++ |+++++++......++||||
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~-i~~~~~~~~~~~~~~~v~~~   79 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPN-IVQILDVFQDDNYLYIVMEY   79 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTT-BCHEEEEEEESSEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccc-cccccccccccccccccccc
Confidence            889999999999999999999999999999988654332    2345999999999998 99999999999999999999


Q ss_pred             cCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.++.+..+..   .+++..+..++.||+.||.|||++||+||||||+||+++ .++.++|+|||.+..
T Consensus        80 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~-~~~~~~l~Dfg~~~~  147 (260)
T PF00069_consen   80 CPGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLD-ENGEVKLIDFGSSVK  147 (260)
T ss_dssp             ETTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEES-TTSEEEESSGTTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence            99977765543   489999999999999999999999999999999999999 777899999999864

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=6.7e-38  Score=331.25  Aligned_cols=280  Identities=28%  Similarity=0.406  Sum_probs=211.9

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-------hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-------KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-------~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +|++.+.||.|+||.||+|.+..+|+.||||.+.....       ...+.+|+.++..++|++ |+++++++...+..|+
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~-i~~~~~~~~~~~~~~l   79 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPN-IIGLLDVFGHKSNINL   79 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCC-ChhhhheeecCCEEEE
Confidence            48899999999999999999998999999999875422       234668999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          275 VLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       275 V~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      ||||+ ++.+..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++....... 
T Consensus        80 v~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~-~~~~~~l~dfg~~~~~~~~~-  156 (298)
T cd07841          80 VFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIA-SDGVLKLADFGLARSFGSPN-  156 (298)
T ss_pred             EEccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEc-CCCCEEEccceeeeeccCCC-
Confidence            99999 666655542    378899999999999999999999999999999999999 66789999999986421000 


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (298)
T cd07841         157 --------------------------------------------------------------------------------  156 (298)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (298)
T cd07841         157 --------------------------------------------------------------------------------  156 (298)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                         .......+++.|+|||++.+...++.++|||||||++|+|++|.+
T Consensus       157 -----------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~  201 (298)
T cd07841         157 -----------------------------------RKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVP  201 (298)
T ss_pred             -----------------------------------ccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCc
Confidence                                               000122467889999998766667899999999999999999988


Q ss_pred             CCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          591 PFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      ||.+... ..+..+....+.+............ .+    ......+....          ......++..+.+||.+||
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~----------~~~~~~~~~~~~~li~~~l  266 (298)
T cd07841         202 FLPGDSDIDQLGKIFEALGTPTEENWPGVTSLP-DY----VEFKPFPPTPL----------KQIFPAASDDALDLLQRLL  266 (298)
T ss_pred             cccCCccHHHHHHHHHHcCCCchhhhhhccccc-cc----ccccccCCcch----------hhhcccccHHHHHHHHHHh
Confidence            8887665 4455555555543322211111100 00    00000001000          1123456789999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      .+||++|||+.|+|.||||++.+...
T Consensus       267 ~~~P~~R~s~~e~l~~~~~~~~~~~~  292 (298)
T cd07841         267 TLNPNKRITARQALEHPYFSNDPAPT  292 (298)
T ss_pred             cCCcccCcCHHHHhhCccccCCCCCC
Confidence            99999999999999999999876543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=8.2e-38  Score=332.20  Aligned_cols=142  Identities=27%  Similarity=0.355  Sum_probs=128.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .+|++.+.||+|+||.||+|.+..+++.||+|.+....  ....+.+|+.+++.+.|+| |+++++++..+...|+||||
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~-v~~~~~~~~~~~~~~lv~e~   98 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN-IVNYLDSYLVGDELWVVMEY   98 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCC-EeeEEEEEEeCCEEEEeecc
Confidence            58999999999999999999999899999999886533  3456788999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhhc--CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.++++..+...  +++.++..++.|++.||+|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        99 ~~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~-~~~~~kl~dfg~~~~  165 (296)
T cd06654          99 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLG-MDGSVKLTDFGFCAQ  165 (296)
T ss_pred             cCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEc-CCCCEEECccccchh
Confidence            999988776643  78899999999999999999999999999999999998 667899999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=8.8e-38  Score=330.09  Aligned_cols=257  Identities=24%  Similarity=0.341  Sum_probs=210.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++...     .....+.+|+.+++++.|+| |+++++++..+...|+|
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~v   79 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPF-LVNLYGSFQDDSNLYLV   79 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCC-ccceeeEEEcCCeEEEE
Confidence            4799999999999999999999999999999998643     23456788999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |||+.++.+..+..   .+++..+..++.||+.||.|||+.||+||||+|+||||+ .++.++|+|||++......    
T Consensus        80 ~e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~-~~~~~kl~dfg~~~~~~~~----  154 (290)
T cd05580          80 MEYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLD-SDGYIKITDFGFAKRVKGR----  154 (290)
T ss_pred             EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEC-CCCCEEEeeCCCccccCCC----
Confidence            99998888766643   388999999999999999999999999999999999998 6677999999998641000    


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (290)
T cd05580         155 --------------------------------------------------------------------------------  154 (290)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (290)
T cd05580         155 --------------------------------------------------------------------------------  154 (290)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                         .....|++.|+|||.+.+.. ++.++|||||||++|+|++|..||
T Consensus       155 -----------------------------------~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~il~~l~~g~~p~  198 (290)
T cd05580         155 -----------------------------------TYTLCGTPEYLAPEIILSKG-YGKAVDWWALGILIYEMLAGYPPF  198 (290)
T ss_pred             -----------------------------------CCCCCCCccccChhhhcCCC-CCccccHHHHHHHHHHHHhCCCCC
Confidence                                               01234788999999986554 589999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       593 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      .......+...+.                                          .....++..++..+.++|.+||..|
T Consensus       199 ~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~l~~li~~~l~~~  236 (290)
T cd05580         199 FDDNPIQIYEKIL------------------------------------------EGKVRFPSFFSPDAKDLIRNLLQVD  236 (290)
T ss_pred             CCCCHHHHHHHHh------------------------------------------cCCccCCccCCHHHHHHHHHHccCC
Confidence            8766433322111                                          0112233456789999999999999


Q ss_pred             CCCCC-----CHHHHhcCCCCccchhcchHhHhh
Q 004835          673 PRLRI-----SAEDALKHEFFAPCHEMLRKQKLL  701 (728)
Q Consensus       673 P~~Rp-----ta~e~L~Hp~f~~~~~~~~~~~~~  701 (728)
                      |.+|+     +++|+++||||..+.+..-.+..+
T Consensus       237 p~~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  270 (290)
T cd05580         237 LTKRLGNLKNGVNDIKNHPWFAGIDWIALLQRKI  270 (290)
T ss_pred             HHHccCcccCCHHHHHcCcccccCCHHHHhhccC
Confidence            99999     899999999999988665554333

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=7e-38  Score=331.76  Aligned_cols=146  Identities=25%  Similarity=0.359  Sum_probs=124.8

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCC--
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD--  270 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~--  270 (728)
                      ...+++|++.+.||+|+||.||+|.+..+++.||||++....    ....+.+|+.+++++.|++ |+++++++....  
T Consensus         8 ~~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~   86 (310)
T cd07865           8 CDEVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHEN-VVNLIEICRTKATP   86 (310)
T ss_pred             cchhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCC-ccceEEEEeccccc
Confidence            345678999999999999999999999999999999876432    2234568999999999999 999988876543  


Q ss_pred             ------eeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeec
Q 004835          271 ------SDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNL  341 (728)
Q Consensus       271 ------~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGl  341 (728)
                            ..|+||||+.+++...+..   .+++.+++.++.||+.||+|||++||+||||||+||+++ .++.++|+|||+
T Consensus        87 ~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~-~~~~~kl~dfg~  165 (310)
T cd07865          87 YNRYKGSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILIT-KDGILKLADFGL  165 (310)
T ss_pred             ccCCCceEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEC-CCCcEEECcCCC
Confidence                  4599999999866555543   378999999999999999999999999999999999998 667899999999


Q ss_pred             ccc
Q 004835          342 AMV  344 (728)
Q Consensus       342 A~~  344 (728)
                      +..
T Consensus       166 ~~~  168 (310)
T cd07865         166 ARA  168 (310)
T ss_pred             ccc
Confidence            874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=6.6e-38  Score=329.25  Aligned_cols=141  Identities=25%  Similarity=0.345  Sum_probs=126.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ++|++.+.||+|+||.||+|.+..+++.||+|++.....   ...+.+|+.++.++.|++ |+++++++...+..++|||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~e   79 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPY-IIGFYGAFFVENRISICTE   79 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCC-eeeEEEEEEECCEEEEEEe
Confidence            368899999999999999999999999999999865422   345778999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++++++..+ ..+++..+..++.|++.||.|||+.||+|+||||+|||++ .++.++|+|||++..
T Consensus        80 ~~~~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~-~~~~~~l~dfg~~~~  144 (279)
T cd06619          80 FMDGGSLDVY-RKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVN-TRGQVKLCDFGVSTQ  144 (279)
T ss_pred             cCCCCChHHh-hcCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEEC-CCCCEEEeeCCccee
Confidence            9999988654 4578889999999999999999999999999999999999 667799999999863

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=4.9e-38  Score=339.51  Aligned_cols=143  Identities=21%  Similarity=0.300  Sum_probs=120.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecceEEeC-
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGCFKCG-  269 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~-  269 (728)
                      .++|++.++||+|+||.||+|.+.     .+++.||||++.....   ...+.+|+.++..+ +|+| |+++++++... 
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~n-iv~~~~~~~~~~   84 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLN-VVNLLGACTKPN   84 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcc-eeeEEeEecCCC
Confidence            368999999999999999999852     3457899999875322   34578999999999 7887 99999987654 


Q ss_pred             CeeEEEEeccCCCChHHHhh------------------------------------------------------------
Q 004835          270 DSDCFVLEHVKHDRPEVLKK------------------------------------------------------------  289 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~------------------------------------------------------------  289 (728)
                      ..+++||||++++.+..+..                                                            
T Consensus        85 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (338)
T cd05102          85 GPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETD  164 (338)
T ss_pred             CceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhcc
Confidence            46899999999998865542                                                            


Q ss_pred             -----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          290 -----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       290 -----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                           .+++..+..++.||+.||+|||++||+||||||+|||++ .++.+||+|||+++.
T Consensus       165 ~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~-~~~~~kl~DfG~a~~  223 (338)
T cd05102         165 DLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLS-ENNVVKICDFGLARD  223 (338)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEc-CCCcEEEeecccccc
Confidence                 156677889999999999999999999999999999998 667899999999874

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=2e-37  Score=324.52  Aligned_cols=275  Identities=27%  Similarity=0.431  Sum_probs=210.7

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      +|++.+.||.|++|.||+|++..+|..||||++....   ....+.+|+.+++.++|+| |+++++++...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~   79 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHEN-IVRLHDVIHTENKLMLVFEY   79 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCC-EeeeeeeEeeCCcEEEEEec
Confidence            5899999999999999999999999999999887532   2355678999999999998 99999999999999999999


Q ss_pred             cCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          279 VKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       279 ~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      +.+++...+..     .+++..+..++.||+.||.|||++||+||||||+||+++ +++.++|+|||++.......    
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~-~~~~~~l~d~g~~~~~~~~~----  154 (284)
T cd07836          80 MDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLIN-KRGELKLADFGLARAFGIPV----  154 (284)
T ss_pred             CCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEC-CCCcEEEeecchhhhhcCCc----
Confidence            99865554432     378999999999999999999999999999999999999 66789999999986310000    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (284)
T cd07836         155 --------------------------------------------------------------------------------  154 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (284)
T cd07836         155 --------------------------------------------------------------------------------  154 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                      ......++|..|+|||++.+...++.++|||||||++|+|++|..||.
T Consensus       155 --------------------------------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~  202 (284)
T cd07836         155 --------------------------------NTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFP  202 (284)
T ss_pred             --------------------------------cccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                                            000123468889999998776667899999999999999999999998


Q ss_pred             CCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          594 GDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       594 ~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      +.+. +.+..++...+.+.......+.... .+.      ...+......+       ..+...++..+.++|.+||..|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~l~~~  268 (284)
T cd07836         203 GTNNEDQLLKIFRIMGTPTESTWPGISQLP-EYK------PTFPRYPPQDL-------QQLFPHADPLGIDLLHRLLQLN  268 (284)
T ss_pred             CCCcHHHHHHHHHHhCCCChhhHHHHhcCc-hhc------ccccCCChHHH-------HHHhhhcCcHHHHHHHHHhcCC
Confidence            7654 5566666665543322211111100 000      00011100111       1122356789999999999999


Q ss_pred             CCCCCCHHHHhcCCCC
Q 004835          673 PRLRISAEDALKHEFF  688 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f  688 (728)
                      |++||++.++++||||
T Consensus       269 p~~R~~~~~~l~~~~f  284 (284)
T cd07836         269 PELRISAHDALQHPWF  284 (284)
T ss_pred             cccCCCHHHHhcCCCC
Confidence            9999999999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=6.3e-38  Score=326.33  Aligned_cols=143  Identities=27%  Similarity=0.455  Sum_probs=123.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhc-CCCCceEEecceEEeC------Ce
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCG------DS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~------~~  271 (728)
                      .+.|++.+.||+|+||.||+|....+++.||+|++... .....+.+|+.++.++ .|+| |+++++++...      ..
T Consensus         5 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~-i~~~~~~~~~~~~~~~~~~   83 (272)
T cd06637           5 AGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRN-IATYYGAFIKKNPPGMDDQ   83 (272)
T ss_pred             hhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCC-eeeEeeEEeecCCCCCCcE
Confidence            45789999999999999999999999999999998643 3345678899999998 5777 99999988753      46


Q ss_pred             eEEEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .|+||||+.++.+..+..     .+++..+..++.|++.||+|||+++|+||||||+||+++ +++.++|+|||++..
T Consensus        84 ~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~-~~~~~~l~Dfg~~~~  160 (272)
T cd06637          84 LWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLT-ENAEVKLVDFGVSAQ  160 (272)
T ss_pred             EEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEEC-CCCCEEEccCCCcee
Confidence            899999999988876643     278889999999999999999999999999999999999 667799999999864

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-38  Score=330.78  Aligned_cols=142  Identities=22%  Similarity=0.342  Sum_probs=128.0

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ++|++.+.||.|+||.||+|.+..++..||+|++....  ....+.+|+.++++++|++ |+++++.+..+...|+||||
T Consensus         5 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~   83 (280)
T cd06611           5 DIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPN-IVGLYEAYFYENKLWILIEF   83 (280)
T ss_pred             hHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCc-eeEEEEEEecCCeEEEEeec
Confidence            57999999999999999999998889999999986543  2346778999999999998 99999999999999999999


Q ss_pred             cCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++++..+..    .+++..++.++.|++.||.|||++||+||||||+||+++ .++.++|+|||++..
T Consensus        84 ~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~-~~~~~~l~d~g~~~~  152 (280)
T cd06611          84 CDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLT-LDGDVKLADFGVSAK  152 (280)
T ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEC-CCCCEEEccCccchh
Confidence            99998877653    388999999999999999999999999999999999998 667899999998753

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=7.7e-38  Score=324.56  Aligned_cols=142  Identities=24%  Similarity=0.355  Sum_probs=127.0

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--------chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      +|+..+.||+|+||.||+|.+..+++.||+|++....        ....+.+|+.++++++|++ |+++++++..++..+
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~   79 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPH-IIRMLGATCEDSHFN   79 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCc-eehhhceeccCCeEE
Confidence            4888899999999999999999999999999986432        2356788999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+||+++.++..++|+|||++..
T Consensus        80 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~  153 (268)
T cd06630          80 LFVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAAR  153 (268)
T ss_pred             EEEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEcccccccc
Confidence            9999999998877653   3788999999999999999999999999999999999985566799999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-39  Score=356.88  Aligned_cols=249  Identities=26%  Similarity=0.360  Sum_probs=209.3

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCCh
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRP  284 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l  284 (728)
                      -+||+|+||+||.|++..+...+|||-+...  ...+-+..||.+.++|.|.| ||+++|++..++++-|.||-++||++
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkN-IVrYLGs~senGf~kIFMEqVPGGSL  659 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKN-IVRYLGSVSENGFFKIFMEQVPGGSL  659 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHh-HHHHhhccCCCCeEEEEeecCCCCcH
Confidence            3799999999999999999999999988643  33445788999999999999 99999999999999999999999999


Q ss_pred             HHHhhc----C--ChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCCC
Q 004835          285 EVLKKE----I--DLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT  358 (728)
Q Consensus       285 ~~l~~~----l--~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~t  358 (728)
                      ..+.+.    +  .+..+-+|..||++||.|||.+.|||||||-+|+||+--.+.+||+|||.++.+.            
T Consensus       660 SsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLA------------  727 (1226)
T KOG4279|consen  660 SSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLA------------  727 (1226)
T ss_pred             HHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhc------------
Confidence            888753    4  7889999999999999999999999999999999998778889999999987420            


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCcccc
Q 004835          359 KYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAER  438 (728)
Q Consensus       359 ~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (728)
                                                                                                      
T Consensus       728 --------------------------------------------------------------------------------  727 (1226)
T KOG4279|consen  728 --------------------------------------------------------------------------------  727 (1226)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCchh
Q 004835          439 LREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSD  518 (728)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  518 (728)
                                                                         .+                           
T Consensus       728 ---------------------------------------------------gi---------------------------  729 (1226)
T KOG4279|consen  728 ---------------------------------------------------GI---------------------------  729 (1226)
T ss_pred             ---------------------------------------------------cC---------------------------
Confidence                                                               00                           


Q ss_pred             HHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhcc-CCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          519 LQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRS-QHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       519 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~-~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                                ...+..+.||..|||||++.++ ..|+.++|||||||++.||.||++||..-..
T Consensus       730 --------------------------nP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~Elgs  783 (1226)
T KOG4279|consen  730 --------------------------NPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGS  783 (1226)
T ss_pred             --------------------------CccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCC
Confidence                                      0112356799999999999654 4589999999999999999999999975322


Q ss_pred             HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC
Q 004835          598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI  677 (728)
Q Consensus       598 ~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp  677 (728)
                      .+.. +++ .                                     ...+.+|.+++.++.+++.||.+|+.+||.+||
T Consensus       784 pqAA-MFk-V-------------------------------------GmyKvHP~iPeelsaeak~FilrcFepd~~~R~  824 (1226)
T KOG4279|consen  784 PQAA-MFK-V-------------------------------------GMYKVHPPIPEELSAEAKNFILRCFEPDPCDRP  824 (1226)
T ss_pred             hhHh-hhh-h-------------------------------------cceecCCCCcHHHHHHHHHHHHHHcCCCcccCc
Confidence            1111 111 0                                     123456788899999999999999999999999


Q ss_pred             CHHHHhcCCCCccc
Q 004835          678 SAEDALKHEFFAPC  691 (728)
Q Consensus       678 ta~e~L~Hp~f~~~  691 (728)
                      +|.++|..||+..-
T Consensus       825 sA~~LL~DpFlq~~  838 (1226)
T KOG4279|consen  825 SAKDLLQDPFLQHN  838 (1226)
T ss_pred             cHHHhccCcccccC
Confidence            99999999999865

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=7.2e-38  Score=332.77  Aligned_cols=142  Identities=27%  Similarity=0.338  Sum_probs=128.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .+|.+.+.||.|+||.||+|.+..+++.||+|.+....  ..+.+.+|+.+++.++|++ |+++++++..++..|+||||
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~-i~~~~~~~~~~~~~~lv~e~   97 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPN-IVNYLDSYLVGDELWVVMEY   97 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCC-EeeEEEEEecCCEEEEeecc
Confidence            58999999999999999999998899999999886432  3456788999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++++..+..  .+++..+..++.|++.||.|||+.||+||||||+|||++ .++.++|+|||++..
T Consensus        98 ~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~-~~~~~~l~Dfg~~~~  164 (297)
T cd06656          98 LAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLG-MDGSVKLTDFGFCAQ  164 (297)
T ss_pred             cCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEC-CCCCEEECcCccceE
Confidence            99998877754  378889999999999999999999999999999999998 667899999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=3e-37  Score=318.12  Aligned_cols=141  Identities=22%  Similarity=0.278  Sum_probs=122.5

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEe-CCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKC-GDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~-~~~~~LV~  276 (728)
                      +|++.+.||+|+||.||++.+..+++.||+|.+....    ....+.+|+.++++++|++ ++++++.+.. ....|+||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~lv~   79 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPN-IVAYRESWEGEDGLLYIVM   79 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCC-eeeeeeeecCCCCEEEEEe
Confidence            5899999999999999999999899999999986432    2345778999999999999 8888887764 44689999


Q ss_pred             eccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||++++.+..+..     .+++.++..++.|++.||+|||++||+||||||+||+++ ..+.++|+|||++..
T Consensus        80 e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~-~~~~~~l~df~~~~~  151 (257)
T cd08223          80 GFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLT-RTNIIKVGDLGIARV  151 (257)
T ss_pred             cccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEe-cCCcEEEecccceEE
Confidence            9999888765542     278999999999999999999999999999999999998 667899999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=2.2e-37  Score=330.68  Aligned_cols=141  Identities=26%  Similarity=0.375  Sum_probs=126.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ++|++.+.||+|+||.||+|.+..++..||+|.+.....   ...+.+|+.++.+++|+| |+++++++..++..|+|||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~e   79 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPY-IVGFYGAFYSDGEISICME   79 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEeeCCEEEEEee
Confidence            479999999999999999999999999999999865422   345778999999999998 9999999999999999999


Q ss_pred             ccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          278 HVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       278 ~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      |++++++..+.+   .+++..+..++.||+.||.|||+ .+|+||||||+|||++ .++.++|+|||++.
T Consensus        80 y~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~-~~~~~~l~dfg~~~  148 (308)
T cd06615          80 HMDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVN-SRGEIKLCDFGVSG  148 (308)
T ss_pred             ccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEe-cCCcEEEccCCCcc
Confidence            999988877653   37889999999999999999997 5999999999999999 56679999999875

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=2.4e-37  Score=327.86  Aligned_cols=290  Identities=24%  Similarity=0.353  Sum_probs=210.6

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeC-----
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCG-----  269 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~-----  269 (728)
                      .+++|.+.+.||.|+||.||+|.+..+++.||||++....    ....+.+|+.+++.++|++ |+++++++...     
T Consensus         6 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~   84 (311)
T cd07866           6 KLRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPN-VVPLIDMAVERPDKSK   84 (311)
T ss_pred             ccccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCC-ccchhhheeccccccc
Confidence            3679999999999999999999999999999999875322    2335678999999999998 99998877543     


Q ss_pred             ---CeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          270 ---DSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       270 ---~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                         ..+|+|+||+.+++...+..   .+++..++.++.||+.||.|||++||+||||||+|||++ +++.++|+|||++.
T Consensus        85 ~~~~~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~-~~~~~~l~dfg~~~  163 (311)
T cd07866          85 RKRGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILID-NQGILKIADFGLAR  163 (311)
T ss_pred             ccCceEEEEEecCCcCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEC-CCCCEEECcCccch
Confidence               35699999999876665542   489999999999999999999999999999999999999 66789999999987


Q ss_pred             cccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCc
Q 004835          344 VGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGI  423 (728)
Q Consensus       344 ~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~  423 (728)
                      ..........        .                                             +               
T Consensus       164 ~~~~~~~~~~--------~---------------------------------------------~---------------  175 (311)
T cd07866         164 PYDGPPPNPK--------G---------------------------------------------G---------------  175 (311)
T ss_pred             hccCCCcccc--------c---------------------------------------------C---------------
Confidence            4211100000        0                                             0               


Q ss_pred             cccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccc
Q 004835          424 TSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAV  503 (728)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (728)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (311)
T cd07866         176 --------------------------------------------------------------------------------  175 (311)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHH
Q 004835          504 AGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLL  583 (728)
Q Consensus       504 ~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~  583 (728)
                                                           ........+..+||+.|+|||++.+...++.++|||||||++|
T Consensus       176 -------------------------------------~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~  218 (311)
T cd07866         176 -------------------------------------GGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFA  218 (311)
T ss_pred             -------------------------------------CcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHH
Confidence                                                 0000111234568999999999876666789999999999999


Q ss_pred             HHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHH
Q 004835          584 YLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF  662 (728)
Q Consensus       584 eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (728)
                      +|++|.+||.+.+. .....++...|.+..+.......... +.. .......+    ..+..       ....++..+.
T Consensus       219 el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~----~~~~~-------~~~~~~~~~~  285 (311)
T cd07866         219 EMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPG-CEG-VHSFTNYP----RTLEE-------RFGKLGPEGL  285 (311)
T ss_pred             HHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhccc-ccc-cccCCCCC----ccHHH-------HcccCChhHH
Confidence            99999999987766 45566666666533322211100000 000 00000000    00100       1123557899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCC
Q 004835          663 DLVDKCLTVNPRLRISAEDALKHEFF  688 (728)
Q Consensus       663 dLi~~~L~~dP~~Rpta~e~L~Hp~f  688 (728)
                      +||.+||..||++|||+.+++.||||
T Consensus       286 ~~i~~~l~~~p~~R~t~~ell~~~~f  311 (311)
T cd07866         286 DLLSKLLSLDPYKRLTASDALEHPYF  311 (311)
T ss_pred             HHHHHHcccCcccCcCHHHHhcCCCC
Confidence            99999999999999999999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=2.3e-37  Score=329.06  Aligned_cols=142  Identities=27%  Similarity=0.363  Sum_probs=128.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .+|++.+.||.|+||.||+|.+..+|+.||+|.+...  .....+.+|+.+++.++|+| |+++++++..++..|+|+||
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~e~   97 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPN-IVNFLDSFLVGDELFVVMEY   97 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCc-eeeeeeeEecCceEEEEEEe
Confidence            4799999999999999999999999999999988643  23456788999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhhc--CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.++++..+...  +++.++..++.|++.||+|||++||+||||||+||+++ .++.++|+|||++..
T Consensus        98 ~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~-~~~~~kl~dfg~~~~  164 (296)
T cd06655          98 LAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLG-MDGSVKLTDFGFCAQ  164 (296)
T ss_pred             cCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEC-CCCCEEEccCccchh
Confidence            999998876543  88999999999999999999999999999999999998 667899999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-37  Score=330.40  Aligned_cols=142  Identities=25%  Similarity=0.317  Sum_probs=127.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||.||+|.+..+++.||||.+....     ....+.+|+.++..+.|++ |+++++.+..+...|+|
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~lv   79 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPF-LPTLYASFQTETYLCLV   79 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCC-chhheeeeecCCEEEEE
Confidence            37999999999999999999999899999999987543     2345788999999999998 99999999999999999


Q ss_pred             EeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++.+..+..     .+++..++.++.||+.||+|||+.||+||||||+||+|+ .++.++|+|||++..
T Consensus        80 ~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~-~~~~~~l~dfg~~~~  152 (316)
T cd05574          80 MDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLH-ESGHIMLSDFDLSKQ  152 (316)
T ss_pred             EEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEc-CCCCEEEeecchhhc
Confidence            99999988877653     378899999999999999999999999999999999999 567899999999875

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=8.7e-38  Score=328.43  Aligned_cols=142  Identities=25%  Similarity=0.374  Sum_probs=126.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ++|++.+.||+|+||.||+|.+..+|..||+|.+.....   ...+.+|+.++.++.|+| |+++++++...+..|+|||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~~~~~~lv~e   79 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPY-IVDFYGAFFIEGAVYMCME   79 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCc-HHhhhhheecCCeEEEEEe
Confidence            468999999999999999999998999999998864322   346788999999999998 9999999999999999999


Q ss_pred             ccCCCChHHHhh------cCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK------EIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~------~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++++.+..+..      .+++..+..++.||+.||.|||+ .||+||||||+||+++ .++.++|+|||++..
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~-~~~~~~l~dfg~~~~  152 (286)
T cd06622          80 YMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVN-GNGQVKLCDFGVSGN  152 (286)
T ss_pred             ecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEEC-CCCCEEEeecCCccc
Confidence            999998876643      47889999999999999999997 5999999999999999 577899999999863

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=1.2e-37  Score=336.44  Aligned_cols=290  Identities=24%  Similarity=0.374  Sum_probs=215.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEe----CCee
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKC----GDSD  272 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~----~~~~  272 (728)
                      ++|++.+.||.|+||.||+|.+..+|+.||+|++...    .....+.+|+.+++.++|++ |+++++++..    ....
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~~~~   83 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDN-IIAIRDILRPPGADFKDV   83 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCC-ccCHHHhccccCCCCceE
Confidence            5899999999999999999999999999999998753    23455778999999999999 9999888763    3578


Q ss_pred             EEEEeccCCCChHHHh--hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          273 CFVLEHVKHDRPEVLK--KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~--~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      |+||||+.+++...+.  ..+++..+..++.||+.||.|||++||+||||||+||+++ .++.+||+|||++........
T Consensus        84 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~-~~~~~kl~dfg~~~~~~~~~~  162 (334)
T cd07855          84 YVVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVN-EDCELRIGDFGMARGLSSSPT  162 (334)
T ss_pred             EEEEehhhhhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEc-CCCcEEecccccceeecccCc
Confidence            9999999875444443  2388999999999999999999999999999999999999 677899999999864211000


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (334)
T cd07855         163 --------------------------------------------------------------------------------  162 (334)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (334)
T cd07855         163 --------------------------------------------------------------------------------  162 (334)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                      .........+||..|+|||++.+...++.++|||||||++|+|++|+.
T Consensus       163 --------------------------------~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~  210 (334)
T cd07855         163 --------------------------------EHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQ  210 (334)
T ss_pred             --------------------------------CCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCC
Confidence                                            000001134688999999998665557999999999999999999999


Q ss_pred             CCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          591 PFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      ||.+.+. ..+..+....|.+.............  .. .  ....+......|.       .+...++..+.+||.+||
T Consensus       211 pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~-~--~~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~l  278 (334)
T cd07855         211 LFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRV--RK-Y--IQNLPRKQPVPWS-------KIFPKASPEALDLLSQML  278 (334)
T ss_pred             ccCCCChHHHHHHHHHHhCCChhHhhhhhchhhH--HH-H--HhhcccCCCCCHH-------HHcccCCHHHHHHHHHHc
Confidence            9987665 56666777777543221111110000  00 0  0000111111111       112456889999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchhcch
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      ..+|++|||+++++.||||...+....
T Consensus       279 ~~~P~~Rpt~~~~l~~~~~~~~~~~~~  305 (334)
T cd07855         279 QFDPEERITVEQALQHPFLAQYHDPDD  305 (334)
T ss_pred             cCChhhCcCHHHHHhChhhhhccCCcc
Confidence            999999999999999999997765544

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=8.5e-38  Score=372.05  Aligned_cols=146  Identities=21%  Similarity=0.299  Sum_probs=122.8

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEe--CCe
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKC--GDS  271 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--~~~  271 (728)
                      ..+++|.+++.||+|+||+||+|++..++..||+|++....    ....+..|+.++..|.|++ |++++++|..  ...
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPN-IVrl~d~f~de~~~~   88 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKN-IVRYIDRFLNKANQK   88 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCC-cCeEEEEEEecCCCE
Confidence            34679999999999999999999999999999999986432    2456788999999999999 9999998854  457


Q ss_pred             eEEEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhC-------CcEeccCCCCceEeecC-------
Q 004835          272 DCFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQ-------GIVHRDVKPGNFLFSCK-------  330 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~-------gIIHRDIKPeNILld~~-------  330 (728)
                      +||||||+.++.|..++.       .+++..++.|+.||+.||.|||+.       +||||||||+||||+..       
T Consensus        89 lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i  168 (1021)
T PTZ00266         89 LYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKI  168 (1021)
T ss_pred             EEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccc
Confidence            899999999988876542       388999999999999999999984       49999999999999732       


Q ss_pred             ---------CCceEEEeeecccc
Q 004835          331 ---------AVKGYLIDFNLAMV  344 (728)
Q Consensus       331 ---------~~~~kL~DFGlA~~  344 (728)
                               ...+||+|||++..
T Consensus       169 ~~~~~n~ng~~iVKLsDFGlAr~  191 (1021)
T PTZ00266        169 TAQANNLNGRPIAKIGDFGLSKN  191 (1021)
T ss_pred             cccccccCCCCceEEccCCcccc
Confidence                     12367888887753

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.4e-37  Score=336.76  Aligned_cols=285  Identities=24%  Similarity=0.394  Sum_probs=212.9

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeC-----Ce
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCG-----DS  271 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~-----~~  271 (728)
                      .+|.+.+.||+|+||+||+|++..+++.||||.+...    .....+.+|+.+++.++|+| |+++++++...     ..
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-i~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHEN-VIAIKDIMPPPHREAFND   83 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCC-ccchHHheecccccccCc
Confidence            4799999999999999999999999999999987642    22345678999999999999 99999887644     35


Q ss_pred             eEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          272 DCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      .|+|+||+.+++...+..  .+++..+..++.||+.||.|||+++|+||||||+||+++ .++.++|+|||++.......
T Consensus        84 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~-~~~~~kL~Dfg~~~~~~~~~  162 (337)
T cd07858          84 VYIVYELMDTDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLN-ANCDLKICDFGLARTTSEKG  162 (337)
T ss_pred             EEEEEeCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEc-CCCCEEECcCccccccCCCc
Confidence            799999998765555433  488999999999999999999999999999999999998 56779999999986411000


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (337)
T cd07858         163 --------------------------------------------------------------------------------  162 (337)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (337)
T cd07858         163 --------------------------------------------------------------------------------  162 (337)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                          .......||..|+|||++.+...++.++|||||||++|+|++|+
T Consensus       163 ------------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~  206 (337)
T cd07858         163 ------------------------------------DFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRK  206 (337)
T ss_pred             ------------------------------------ccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCC
Confidence                                                00012347888999999876555799999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          590 TPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       590 ~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      +||.+.+. ..+..+....|.+..-......+...  ....   ..++......+       ......++..+.+||.+|
T Consensus       207 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~li~~~  274 (337)
T cd07858         207 PLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKA--RRYI---RSLPYTPRQSF-------ARLFPHANPLAIDLLEKM  274 (337)
T ss_pred             CCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhh--hHHH---HhcCcccccCH-------HHHcccCCHHHHHHHHHH
Confidence            99987665 45666666777543222111110000  0000   00000000000       011245788999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          669 LTVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      |..||++|||++++|+||||..++...
T Consensus       275 l~~~P~~Rps~~ell~h~~~~~~~~~~  301 (337)
T cd07858         275 LVFDPSKRITVEEALAHPYLASLHDPS  301 (337)
T ss_pred             hcCChhhccCHHHHHcCcchhhhcCcc
Confidence            999999999999999999999876554

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=3.8e-37  Score=316.83  Aligned_cols=141  Identities=25%  Similarity=0.344  Sum_probs=125.9

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +|.+.+.||+|+||.||+|.+..+++.|++|.+...    .....+.+|+.+++.++|++ |+++++++...+..|+|||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSY-IIRYYESFLDKGKLNIVME   79 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCC-eehheeeeccCCEEEEEEE
Confidence            488999999999999999999999999999987642    23456788999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.++.+..+..     .+++..+..++.|++.||.|||+.||+||||||+||+++ .++.++|+|||++..
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~-~~~~~~l~df~~~~~  150 (256)
T cd08529          80 YAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLD-AYDNVKIGDLGVAKL  150 (256)
T ss_pred             eCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEe-CCCCEEEccccccee
Confidence            999988876642     377888999999999999999999999999999999999 667799999999864

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=3.4e-37  Score=319.99  Aligned_cols=141  Identities=24%  Similarity=0.370  Sum_probs=125.1

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----------hhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----------KHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----------~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      +|.+...||.|+||.||+|.+..+++.||+|.+.....           ...+.+|+.+++++.|++ |+++++++...+
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~   79 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN-IVQYLGSSLDAD   79 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCC-eeeEEEEEEeCC
Confidence            47788999999999999999988899999998764321           135778999999999999 999999999999


Q ss_pred             eeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          271 SDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..++||||++++++..+..   .+++..+..++.|++.||.|||+.||+||||+|+||+++ +++.++|+|||+++.
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~-~~~~~~l~dfg~~~~  155 (267)
T cd06628          80 HLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVD-NKGGIKISDFGISKK  155 (267)
T ss_pred             ccEEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEc-CCCCEEecccCCCcc
Confidence            9999999999988877654   378889999999999999999999999999999999998 677899999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=4.3e-37  Score=320.16  Aligned_cols=147  Identities=22%  Similarity=0.268  Sum_probs=127.2

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +.+++.+.....||+|+||.||+|++..++..||+|.+....  ....+.+|+.+++.++|++ |+++++++..++..++
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~l   82 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRN-IVQYLGSDSENGFFKI   82 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCC-eeeeeeeeccCCEEEE
Confidence            344556666679999999999999999899999999876543  3456889999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhhc----C--ChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKKE----I--DLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~~----l--~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||+.++.+..+...    +  ++..+..++.||+.||+|||++||+||||||+||+++.+.+.++|+|||++..
T Consensus        83 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~  158 (268)
T cd06624          83 FMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKR  158 (268)
T ss_pred             EEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhhee
Confidence            9999999888776532    4  67888899999999999999999999999999999985567899999999864

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-40  Score=335.78  Aligned_cols=254  Identities=26%  Similarity=0.357  Sum_probs=212.5

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCC
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH  281 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~  281 (728)
                      -|.++++||+|+||.||+|.++.+|+.+|||.+......+.+..|+.|++++..+. ++++|+.|-....+|+|||||+.
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISIMQQC~S~y-VVKYYGSYFK~sDLWIVMEYCGA  112 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISIMQQCKSKY-VVKYYGSYFKHSDLWIVMEYCGA  112 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccchHHHHHHHHHHHHHcCCch-hhhhhhhhccCCceEeehhhcCC
Confidence            47888999999999999999999999999999998888899999999999998887 99999999999999999999999


Q ss_pred             CChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCC
Q 004835          282 DRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG  357 (728)
Q Consensus       282 ~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~  357 (728)
                      |+...+.+    .+.+.++..+++..+.||+|||...-||||||..|||++ ..+.+||+|||.|..+++.         
T Consensus       113 GSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLN-T~G~AKLADFGVAGQLTDT---------  182 (502)
T KOG0574|consen  113 GSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLN-TDGIAKLADFGVAGQLTDT---------  182 (502)
T ss_pred             CcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEc-ccchhhhhhccccchhhhh---------
Confidence            99877653    399999999999999999999999999999999999999 6678999999999652210         


Q ss_pred             CcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccc
Q 004835          358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAE  437 (728)
Q Consensus       358 t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (728)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (502)
T KOG0574|consen  183 --------------------------------------------------------------------------------  182 (502)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCch
Q 004835          438 RLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLS  517 (728)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  517 (728)
                                                                                             |.       
T Consensus       183 -----------------------------------------------------------------------MA-------  184 (502)
T KOG0574|consen  183 -----------------------------------------------------------------------MA-------  184 (502)
T ss_pred             -----------------------------------------------------------------------HH-------
Confidence                                                                                   00       


Q ss_pred             hHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          518 DLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       518 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                                   +.....|||.||||||+...+ |++++||||||++..||.-|++||.+-.+
T Consensus       185 -----------------------------KRNTVIGTPFWMAPEVI~EIG-Y~~~ADIWSLGITaIEMAEG~PPYsDIHP  234 (502)
T KOG0574|consen  185 -----------------------------KRNTVIGTPFWMAPEVIEEIG-YDTKADIWSLGITAIEMAEGRPPYSDIHP  234 (502)
T ss_pred             -----------------------------hhCccccCcccccHHHHHHhc-cchhhhHhhhcchhhhhhcCCCCcccccc
Confidence                                         012457999999999996665 69999999999999999999999976433


Q ss_pred             HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC
Q 004835          598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI  677 (728)
Q Consensus       598 ~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp  677 (728)
                      -  ..|+                             -+|.-..+.+.        -++..+.++-||+++||..+|++|.
T Consensus       235 M--RAIF-----------------------------MIPT~PPPTF~--------KPE~WS~~F~DFi~~CLiK~PE~R~  275 (502)
T KOG0574|consen  235 M--RAIF-----------------------------MIPTKPPPTFK--------KPEEWSSEFNDFIRSCLIKKPEERK  275 (502)
T ss_pred             c--ceeE-----------------------------eccCCCCCCCC--------ChHhhhhHHHHHHHHHhcCCHHHHH
Confidence            1  1111                             11111222221        1355688999999999999999999


Q ss_pred             CHHHHhcCCCCccchh
Q 004835          678 SAEDALKHEFFAPCHE  693 (728)
Q Consensus       678 ta~e~L~Hp~f~~~~~  693 (728)
                      ||.++++|||.++.+.
T Consensus       276 TA~~L~~H~FiknA~g  291 (502)
T KOG0574|consen  276 TALRLCEHTFIKNAPG  291 (502)
T ss_pred             HHHHHhhhhhhcCCCc
Confidence            9999999999997653

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=1.4e-37  Score=327.76  Aligned_cols=134  Identities=25%  Similarity=0.402  Sum_probs=112.4

Q ss_pred             EecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHh---cCCCCceEEecceEEeCCeeEEEEecc
Q 004835          208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLER---FGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~---L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      .||+|+||.||+|.+..+++.||+|++....     ....+.+|..++..   ..|++ |+.+++++..++..|+||||+
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~lv~e~~   79 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPF-IVCMTYAFHTPDKLCFILDLM   79 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCc-EeEEEEEEecCCeEEEEEecC
Confidence            4899999999999999899999999886432     12233445444433   35677 999999999999999999999


Q ss_pred             CCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          280 KHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       280 ~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      .++++..+..   .+++..+..++.|++.||.|||+++|+||||||+|||++ .++.++|+|||++.
T Consensus        80 ~~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~-~~~~~~l~dfg~~~  145 (279)
T cd05633          80 NGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLD-EHGHVRISDLGLAC  145 (279)
T ss_pred             CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEEC-CCCCEEEccCCcce
Confidence            9998876543   389999999999999999999999999999999999998 66789999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=2.2e-37  Score=325.04  Aligned_cols=140  Identities=25%  Similarity=0.363  Sum_probs=125.2

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      |++.+.||.|+||.||+|.+..++..+|+|.+....  ....+.+|+.+++.+.|+| |+++++++..+...|+||||+.
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~-ii~~~~~~~~~~~~~~v~e~~~   85 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPN-IVKLLDAFYYENNLWILIEFCA   85 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCC-eeeEEEEEeeCCEEEEEEEecC
Confidence            688889999999999999999999999999986543  2345778999999999999 9999999999999999999999


Q ss_pred             CCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          281 HDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++..+..    .+++..+..++.||+.||.|||+.||+||||||+|||++ .++.++|+|||++..
T Consensus        86 ~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~-~~~~~kl~dfg~~~~  152 (282)
T cd06643          86 GGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFT-LDGDIKLADFGVSAK  152 (282)
T ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEc-cCCCEEEcccccccc
Confidence            998876542    388999999999999999999999999999999999998 667899999999863

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=4e-37  Score=318.13  Aligned_cols=142  Identities=24%  Similarity=0.321  Sum_probs=127.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ++|++.+.||.|+||+||+|....++..+|+|++....   ....+.+|+.+++.+.|++ |+++++.+..+...|+|||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~iv~e   79 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPN-VVKYYTSFVVGDELWLVMP   79 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCC-EEEEEEEEeeCCEEEEEEe
Confidence            47999999999999999999998899999999986432   3456789999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++.++.+..+.+      .+++..+..++.||+.||+|||++||+||||||+||+++ +++.++|+|||++..
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~-~~~~~~l~df~~~~~  151 (267)
T cd06610          80 YLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLG-EDGSVKIADFGVSAS  151 (267)
T ss_pred             ccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEc-CCCCEEEcccchHHH
Confidence            999988876653      268889999999999999999999999999999999999 567799999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=2e-37  Score=318.82  Aligned_cols=142  Identities=28%  Similarity=0.429  Sum_probs=129.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      ++|++.+.||.|+||.||+|.+..+++.||+|.+........+.+|+.+++.++|++ |+++++++......|+++||+.
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l~~~~-i~~~~~~~~~~~~~~l~~e~~~   81 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPY-IVKYYGSYFKNTDLWIVMEYCG   81 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhCCCCc-EeeeeeeeecCCcEEEEEecCC
Confidence            579999999999999999999988899999999876555677899999999999999 9999999999999999999999


Q ss_pred             CCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          281 HDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++.+..+..    .+++..+..++.|++.||.|||+.+|+||||+|+||+++ .++.++|+|||++..
T Consensus        82 ~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~-~~~~~~l~dfg~~~~  148 (256)
T cd06612          82 AGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLN-EEGQAKLADFGVSGQ  148 (256)
T ss_pred             CCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEC-CCCcEEEcccccchh
Confidence            988877653    378999999999999999999999999999999999999 566799999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-37  Score=322.27  Aligned_cols=271  Identities=27%  Similarity=0.394  Sum_probs=208.8

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      |++.+.||.|++|.||+|.+..+|..||+|++....    ....+.+|+.+++.++|++ ++++++++..+...|+||||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~-iv~~~~~~~~~~~~~iv~e~   79 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPN-IVRLLDVVHSENKLYLVFEF   79 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCC-ccCHhheeccCCeEEEEEec
Confidence            678899999999999999999899999999886432    2345778999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcccc
Q 004835          279 VKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQAT  354 (728)
Q Consensus       279 ~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~  354 (728)
                      +++.+...+..    .+++..+..++.|++.||+|||+++++||||+|+||+++ .++.++|+|||++.......     
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~-~~~~~~l~df~~~~~~~~~~-----  153 (283)
T cd07835          80 LDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLID-REGALKLADFGLARAFGVPV-----  153 (283)
T ss_pred             cCcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEc-CCCcEEEeecccccccCCCc-----
Confidence            97654444432    378999999999999999999999999999999999999 57789999999986310000     


Q ss_pred             CCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCC
Q 004835          355 LPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRT  434 (728)
Q Consensus       355 ~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (728)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (283)
T cd07835         154 --------------------------------------------------------------------------------  153 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCC
Q 004835          435 PAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPS  514 (728)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (728)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (283)
T cd07835         154 --------------------------------------------------------------------------------  153 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 004835          515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG  594 (728)
Q Consensus       515 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~  594 (728)
                                                     .......++..|+|||++.+...++.++|||||||++|+|++|.+||.+
T Consensus       154 -------------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~  202 (283)
T cd07835         154 -------------------------------RTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPG  202 (283)
T ss_pred             -------------------------------cccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence                                           0001224678899999987665568899999999999999999999987


Q ss_pred             CCh-HHHHHHHHHhCCchHHHHHHh---ccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          595 DPE-QNIKDIAKLRGSEDLWEVAKL---HNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       595 ~~~-~~l~~i~~~~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      .+. ..+..+++..+.+..+.....   .+....++..       ...          ........++..+.+||.+||.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~~li~~~l~  265 (283)
T cd07835         203 DSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKW-------ARQ----------DLSKVVPNLDEDGLDLLSKMLV  265 (283)
T ss_pred             CCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccc-------ccc----------chhhhcCCCCHHHHHHHHHHhc
Confidence            665 456677777776443321111   0000011100       000          0011234577899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCC
Q 004835          671 VNPRLRISAEDALKHEFF  688 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f  688 (728)
                      .||++|||++|++.||||
T Consensus       266 ~~P~~Rpt~~~il~~~~~  283 (283)
T cd07835         266 YDPAKRISAKAALQHPYF  283 (283)
T ss_pred             CChhhCcCHHHHhcCCCC
Confidence            999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=8.1e-37  Score=325.37  Aligned_cols=142  Identities=28%  Similarity=0.338  Sum_probs=127.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||.||++.+..+++.||+|.+....     ....+.+|+.++..++|++ |+++++.+..++..|+|
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~~~~~~lv   79 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPF-VVSMFCSFETKRHLCMV   79 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCC-eeeeEEEEecCCEEEEE
Confidence            47999999999999999999999999999999886432     2345778999999999998 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++++..+.+   .+++..+..++.|++.||.|||+.||+||||||+||+++ ..+.++|+|||+++.
T Consensus        80 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~-~~~~~~l~dfg~~~~  150 (305)
T cd05609          80 MEYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLIT-SMGHIKLTDFGLSKI  150 (305)
T ss_pred             EecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEEC-CCCCEEEeeCCCccc
Confidence            99999988877653   378889999999999999999999999999999999998 677899999999874

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.5e-37  Score=322.98  Aligned_cols=142  Identities=29%  Similarity=0.391  Sum_probs=127.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ++|++.+.||.|+||.||+|++..+++.||+|++....   ....+.+|+.+++.+.|+| |+++++++..+...|+|+|
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~v~e   79 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPY-ITKYYGSFLKGSKLWIIME   79 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCC-eeeeeEEEEECCeEEEEEE
Confidence            36889999999999999999999999999999986542   2345778999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.++.+..+..  .+++..+..++.|++.||.|||+++|+||||+|+||+++ +++.++|+|||++..
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~-~~~~~~l~d~g~~~~  147 (274)
T cd06609          80 YCGGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANILLS-EEGDVKLADFGVSGQ  147 (274)
T ss_pred             eeCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEC-CCCCEEEccccccee
Confidence            999988776654  489999999999999999999999999999999999999 667899999999874

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.7e-37  Score=334.25  Aligned_cols=285  Identities=27%  Similarity=0.432  Sum_probs=213.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCC------
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD------  270 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~------  270 (728)
                      ++|.+.+.||+|+||.||+|.+..+|+.||||++...    .....+.+|+.++..+.|+| |+++++++....      
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHEN-VIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCC-ccchhheecccccCCCCc
Confidence            5899999999999999999999889999999988643    22345778999999999999 999999887543      


Q ss_pred             eeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          271 SDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      ..|+|+||+...+.......+++..+..++.|++.||+|||++||+||||||+|||++ .++.++|+|||++.....   
T Consensus        94 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~-~~~~~kL~dfg~~~~~~~---  169 (342)
T cd07879          94 DFYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVN-EDCELKILDFGLARHADA---  169 (342)
T ss_pred             eEEEEecccccCHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEC-CCCCEEEeeCCCCcCCCC---
Confidence            4699999998643333333689999999999999999999999999999999999999 667899999999863100   


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (342)
T cd07879         170 --------------------------------------------------------------------------------  169 (342)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (342)
T cd07879         170 --------------------------------------------------------------------------------  169 (342)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                          ......||..|+|||++.+...++.++|||||||++|||++|+.
T Consensus       170 ------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~  213 (342)
T cd07879         170 ------------------------------------EMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKT  213 (342)
T ss_pred             ------------------------------------CCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCC
Confidence                                                00023468889999998665557899999999999999999999


Q ss_pred             CCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCC-CCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          591 PFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRES-SFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      ||.+.+. ..+..++...|.+............. .+      ....+......+.       .....++..+.+||.+|
T Consensus       214 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~  280 (342)
T cd07879         214 LFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSY------IKSLPKYPRKDFS-------TLFPKASPQAVDLLEKM  280 (342)
T ss_pred             CCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHH------HhhcCCcccchHH-------HHhcCCCHHHHHHHHHH
Confidence            9988764 55666676666432211111111000 00      0000111111110       11134678899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCccchhcchHhH
Q 004835          669 LTVNPRLRISAEDALKHEFFAPCHEMLRKQK  699 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~  699 (728)
                      |+.||++||+++++|.||||..+......++
T Consensus       281 l~~dP~~R~~~~e~l~h~~f~~~~~~~~~~~  311 (342)
T cd07879         281 LELDVDKRLTATEALEHPYFDSFRDADEETE  311 (342)
T ss_pred             cCCChhhCcCHHHHhcCcchhhcccccccCC
Confidence            9999999999999999999999876554443

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=4.7e-37  Score=316.09  Aligned_cols=142  Identities=24%  Similarity=0.305  Sum_probs=126.5

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +|++.+.||+|+||.||+|....+++.||||.+....    ....+.+|+.+++.++|++ |+++++.+..++..++|||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPN-IIEYYENFLEDKALMIVME   79 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCc-hhheeeeEecCCEEEEEEe
Confidence            5899999999999999999999999999999886432    3456788999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++++++..+...     +++..+..++.|++.||.|||++||+||||||+||+++.++..++|+|||++..
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~  151 (256)
T cd08220          80 YAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKI  151 (256)
T ss_pred             cCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCcee
Confidence            9999888766532     788899999999999999999999999999999999986666789999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.5e-38  Score=345.81  Aligned_cols=252  Identities=24%  Similarity=0.324  Sum_probs=213.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCe-eEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCF  274 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~-~~L  274 (728)
                      ++.|..++++|+|+||.+++++++.+++.||+|.+...    ..+....+|+.+++++.||| |+.+.+.|..++. .||
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~-iv~y~ds~~~~~~~l~I   81 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPN-IVEYKDSFEEDGQLLCI   81 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCC-eeeeccchhcCCceEEE
Confidence            57899999999999999999999999999999998743    23446789999999999999 9999999998887 999


Q ss_pred             EEeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          275 VLEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       275 V~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      ||+||+||++...+..     ++++.+..++.||+.|+.|||++.|+|||||+.||++. .+..++|.|||+|+.+....
T Consensus        82 vm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Niflt-k~~~VkLgDfGlaK~l~~~~  160 (426)
T KOG0589|consen   82 VMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLT-KDKKVKLGDFGLAKILNPED  160 (426)
T ss_pred             EEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhcc-ccCceeecchhhhhhcCCch
Confidence            9999999999877642     89999999999999999999999999999999999999 55567999999998632110


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (426)
T KOG0589|consen  161 --------------------------------------------------------------------------------  160 (426)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (426)
T KOG0589|consen  161 --------------------------------------------------------------------------------  160 (426)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                          ......+||+.|+.||++.+.+ |+.|+|||||||++|||++=+
T Consensus       161 ------------------------------------~~a~tvvGTp~YmcPEil~d~p-Yn~KSDiWsLGC~~yEm~~lk  203 (426)
T KOG0589|consen  161 ------------------------------------SLASTVVGTPYYMCPEILSDIP-YNEKSDIWSLGCCLYEMCTLK  203 (426)
T ss_pred             ------------------------------------hhhheecCCCcccCHHHhCCCC-CCccCcchhhcchHHHHHhcc
Confidence                                                0112568999999999995554 799999999999999999999


Q ss_pred             CCCCCCChHHH-HHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          590 TPFFGDPEQNI-KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       590 ~PF~~~~~~~l-~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      ++|.+.+...+ .+|++...                                          ...+...+.++..||..|
T Consensus       204 ~aF~a~~m~~Li~ki~~~~~------------------------------------------~Plp~~ys~el~~lv~~~  241 (426)
T KOG0589|consen  204 PAFKASNMSELILKINRGLY------------------------------------------SPLPSMYSSELRSLVKSM  241 (426)
T ss_pred             cccCccchHHHHHHHhhccC------------------------------------------CCCCccccHHHHHHHHHH
Confidence            99998877554 34432111                                          123456788999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCccch
Q 004835          669 LTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      |..+|+.||+|.++|.+|......
T Consensus       242 l~~~P~~RPsa~~LL~~P~l~~~~  265 (426)
T KOG0589|consen  242 LRKNPEHRPSALELLRRPHLLRYL  265 (426)
T ss_pred             hhcCCccCCCHHHHhhChhhhhHH
Confidence            999999999999999999877555

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=2.6e-37  Score=324.15  Aligned_cols=145  Identities=28%  Similarity=0.445  Sum_probs=124.6

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhc-CCCCceEEecceEEe------C
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERF-GGKNFIIKYEGCFKC------G  269 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~------~  269 (728)
                      ...+.|++.+.||.|+||.||+|++..+++.||+|++.... ....+..|+.++.++ .|+| |+++++++..      .
T Consensus        13 ~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~-i~~~~~~~~~~~~~~~~   91 (282)
T cd06636          13 DPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRN-IATYYGAFIKKSPPGHD   91 (282)
T ss_pred             ChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCc-EEEEeeehhcccccCCC
Confidence            34578999999999999999999999999999999886542 345677899999998 5777 9999998853      4


Q ss_pred             CeeEEEEeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          270 DSDCFVLEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ...|+||||++++++..+...     +++..+..++.||+.||.|||+.||+||||||+||+++ +.+.++|+|||++..
T Consensus        92 ~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~-~~~~~~l~dfg~~~~  170 (282)
T cd06636          92 DQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLT-ENAEVKLVDFGVSAQ  170 (282)
T ss_pred             CEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEC-CCCCEEEeeCcchhh
Confidence            678999999999888766532     67888899999999999999999999999999999999 667799999999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=1.7e-37  Score=322.60  Aligned_cols=142  Identities=28%  Similarity=0.410  Sum_probs=127.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ++|.+.+.||+|+||.||+|++..+++.||+|+++...  ....+.+|+.+++.+.|++ |+++++++...+..|+||||
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~-ii~~~~~~~~~~~~~lv~e~   87 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSN-IVAYFGSYLRRDKLWICMEF   87 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCC-eeeEEEEEEeCCEEEEEEec
Confidence            47889999999999999999999999999999986543  2345678999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++.+..+..   .+++.+++.++.|++.||.|||+.||+||||||+||+++ ..+.++|+|||++..
T Consensus        88 ~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~-~~~~~~l~dfg~~~~  155 (267)
T cd06645          88 CGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLT-DNGHVKLADFGVSAQ  155 (267)
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEC-CCCCEEECcceeeeE
Confidence            99988877653   488999999999999999999999999999999999998 666799999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=2.4e-37  Score=321.47  Aligned_cols=142  Identities=25%  Similarity=0.375  Sum_probs=127.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....  ....+.+|+.++.++.|++ |+++++++...+..|+||||
T Consensus         9 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~-ii~~~~~~~~~~~~~iv~e~   87 (267)
T cd06646           9 HDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCN-IVAYFGSYLSREKLWICMEY   87 (267)
T ss_pred             hhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCC-eeeeeEEEEeCCEEEEEEeC
Confidence            57999999999999999999999899999999986432  3345778999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++.+..+..   .+++..+..++.|++.||.|||+.||+||||||+||+++ +.+.++|+|||++..
T Consensus        88 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~-~~~~~~l~dfg~~~~  155 (267)
T cd06646          88 CGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLT-DNGDVKLADFGVAAK  155 (267)
T ss_pred             CCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEC-CCCCEEECcCcccee
Confidence            99988876543   378899999999999999999999999999999999998 666799999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-39  Score=352.76  Aligned_cols=141  Identities=24%  Similarity=0.351  Sum_probs=126.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      +-|.|+..||.|+||.||+|..+.++-..|.|++...  ...+.+.-||.||..+.||+ |+++++.|...+.+||+.||
T Consensus        32 d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~-ivkLl~ayy~enkLwiliEF  110 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPV-IVKLLSAYYFENKLWILIEF  110 (1187)
T ss_pred             HHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChH-HHHHHHHHhccCceEEEEee
Confidence            3588899999999999999999999988999988654  34466888999999999998 99999999999999999999


Q ss_pred             cCCCChHHHh----hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          279 VKHDRPEVLK----KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       279 ~~~~~l~~l~----~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      |+||-.+.+.    +.+.+.++..+.+|++.||.|||+++|||||||..|||+. -++.++|+|||.+.
T Consensus       111 C~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~T-ldGdirLADFGVSA  178 (1187)
T KOG0579|consen  111 CGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLT-LDGDIRLADFGVSA  178 (1187)
T ss_pred             cCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceEEE-ecCcEeeecccccc
Confidence            9999877654    4589999999999999999999999999999999999999 55679999999975

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=4.8e-37  Score=333.35  Aligned_cols=143  Identities=24%  Similarity=0.366  Sum_probs=122.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeC---------
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCG---------  269 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~---------  269 (728)
                      .+|.+.+.||.|+||.||+|.+..+|+.||+|++....  ....+.+|+.+++.++|++ |+++++++...         
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~-i~~~~~~~~~~~~~~~~~~~   83 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDN-IVKVYEVLGPSGSDLTEDVG   83 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCc-chhhHhhhcccccccccccc
Confidence            58999999999999999999999999999999876432  3455788999999999999 99888776543         


Q ss_pred             -----CeeEEEEeccCCCChHHHhh-cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          270 -----DSDCFVLEHVKHDRPEVLKK-EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       270 -----~~~~LV~E~~~~~~l~~l~~-~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                           ...|+||||+++++...+.. .+++..++.++.||+.||.|||+.||+||||||+||+++.++..++|+|||++.
T Consensus        84 ~~~~~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~~~  163 (342)
T cd07854          84 SLTELNSVYIVQEYMETDLANVLEQGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLAR  163 (342)
T ss_pred             cccccceEEEEeecccccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCcccce
Confidence                 35799999998644433332 488999999999999999999999999999999999998667778999999986


Q ss_pred             c
Q 004835          344 V  344 (728)
Q Consensus       344 ~  344 (728)
                      .
T Consensus       164 ~  164 (342)
T cd07854         164 I  164 (342)
T ss_pred             e
Confidence            4

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=7.5e-37  Score=317.42  Aligned_cols=140  Identities=25%  Similarity=0.349  Sum_probs=123.6

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--------chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      +|.+.+.||.|+||.||+|.. .+|+.+|+|.+....        ....+.+|+.+++.++|+| |+++++++......|
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~   78 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLT-NQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVN-IVQYLGTCLDDNTIS   78 (265)
T ss_pred             CccccceEeccCCeEEEEEEE-cCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCC-EeeEeeEeecCCeEE
Confidence            478899999999999999987 478999999876432        1245788999999999998 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +|+||+.++.+..+..   .+++..+..++.|++.||+|||+.+|+|+||+|+||+++ +++.++|+|||++..
T Consensus        79 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~-~~~~~~l~dfg~~~~  151 (265)
T cd06631          79 IFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLM-PNGIIKLIDFGCARR  151 (265)
T ss_pred             EEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEEC-CCCeEEeccchhhHh
Confidence            9999999988877653   378899999999999999999999999999999999999 667899999999864

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=5.7e-37  Score=319.23  Aligned_cols=141  Identities=23%  Similarity=0.315  Sum_probs=122.9

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-------chhHHHHHHHHHHhcCCCCceEEecceEEe--CCee
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-------SKHYVSNELRMLERFGGKNFIIKYEGCFKC--GDSD  272 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--~~~~  272 (728)
                      +|++.+.||+|+||.||+|.+..++..||+|++....       ....+.+|+.+++.++|++ |+++++++..  ....
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~   81 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHER-IVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCC-eeeEEEEEEcCCCCEE
Confidence            7899999999999999999999899999999876321       1245778999999999999 9999998865  3678


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++||++++.+..+..   .+++..++.++.||+.||+|||+++|+||||||+||+++ .++.++|+|||++..
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~-~~~~~~l~dfg~~~~  155 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRD-SAGNVKLGDFGASKR  155 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEC-CCCCEEEccCCCccc
Confidence            99999999888776543   378889999999999999999999999999999999998 667799999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=1.3e-36  Score=320.56  Aligned_cols=149  Identities=26%  Similarity=0.413  Sum_probs=127.7

Q ss_pred             cccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhc-CCCCceEEecceEEeC--
Q 004835          194 AKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERF-GGKNFIIKYEGCFKCG--  269 (728)
Q Consensus       194 ~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~--  269 (728)
                      ..+....++|.+.+.||+|+||.||+|....+++.+|+|++.... ....+.+|+.++.++ +|+| ++++++++...  
T Consensus        15 ~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~n-i~~~~~~~~~~~~   93 (291)
T cd06639          15 ESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPN-VVKFYGMFYKADK   93 (291)
T ss_pred             ccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCC-eEEEEEEEEeccc
Confidence            334445678999999999999999999999999999999986532 345677899999999 7888 99999988753  


Q ss_pred             ---CeeEEEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEee
Q 004835          270 ---DSDCFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDF  339 (728)
Q Consensus       270 ---~~~~LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DF  339 (728)
                         ...|+||||+.++++..+.+       .+++..++.++.|++.||.|||+.||+||||||+||+++ .++.++|+||
T Consensus        94 ~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~-~~~~~kl~df  172 (291)
T cd06639          94 LVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLT-TEGGVKLVDF  172 (291)
T ss_pred             cCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEc-CCCCEEEeec
Confidence               35899999999988876542       378899999999999999999999999999999999998 5667999999


Q ss_pred             ecccc
Q 004835          340 NLAMV  344 (728)
Q Consensus       340 GlA~~  344 (728)
                      |++..
T Consensus       173 g~~~~  177 (291)
T cd06639         173 GVSAQ  177 (291)
T ss_pred             ccchh
Confidence            99864

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.8e-37  Score=354.66  Aligned_cols=143  Identities=22%  Similarity=0.287  Sum_probs=115.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCC-eEEEEE------------------eccC-cCchhHHHHHHHHHHhcCCCCce
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDG-TVVAIK------------------CPHA-NASKHYVSNELRMLERFGGKNFI  259 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g-~~VAIK------------------~i~~-~~~~~~~~~Ei~iL~~L~h~n~I  259 (728)
                      +++|++++.||+|+||+||+|..+... ..+++|                  .+.. ......+.+|+.+|.+++|+| |
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hpn-I  225 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHEN-I  225 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCC-c
Confidence            468999999999999999998764322 222222                  1111 112345789999999999999 9


Q ss_pred             EEecceEEeCCeeEEEEeccCCCChHHHhhc-------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC
Q 004835          260 IKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE-------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV  332 (728)
Q Consensus       260 vkl~~~~~~~~~~~LV~E~~~~~~l~~l~~~-------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~  332 (728)
                      +++++++...+..|+|++++.++++..+...       .....++.|+.||+.||.|||++|||||||||+||||+ .++
T Consensus       226 v~l~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~-~~~  304 (501)
T PHA03210        226 LKIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLN-CDG  304 (501)
T ss_pred             CcEeEEEEECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEC-CCC
Confidence            9999999999999999999988777665422       23566788999999999999999999999999999998 667


Q ss_pred             ceEEEeeecccc
Q 004835          333 KGYLIDFNLAMV  344 (728)
Q Consensus       333 ~~kL~DFGlA~~  344 (728)
                      .+||+|||++..
T Consensus       305 ~vkL~DFGla~~  316 (501)
T PHA03210        305 KIVLGDFGTAMP  316 (501)
T ss_pred             CEEEEeCCCcee
Confidence            899999999874

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=3.4e-37  Score=323.16  Aligned_cols=134  Identities=25%  Similarity=0.372  Sum_probs=118.2

Q ss_pred             ecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCC
Q 004835          209 EGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       209 LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~  283 (728)
                      ||+|+||+||+|.+..+|+.||+|++...     .....+.+|+.+++.++|++ |+++++++...+..|+||||++++.
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~lv~e~~~~~~   79 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRF-IVSLAYAFETKDDLCLVMTLMNGGD   79 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCC-EeeeeeEEecCCeEEEEEecCCCCc
Confidence            68999999999999999999999988642     22344678999999999988 9999999999999999999999988


Q ss_pred             hHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          284 PEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       284 l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +..+..     .+++..+..++.|++.||.|||+.||+||||+|+||+++ +++.++|+|||++..
T Consensus        80 L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~-~~~~~~l~dfg~~~~  144 (277)
T cd05577          80 LKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLD-DHGNVRISDLGLAVE  144 (277)
T ss_pred             HHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEC-CCCCEEEccCcchhh
Confidence            875542     378889999999999999999999999999999999999 667899999999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.2e-37  Score=331.48  Aligned_cols=288  Identities=26%  Similarity=0.377  Sum_probs=217.2

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCC-----ee
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD-----SD  272 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~-----~~  272 (728)
                      +|++.+.||.|+||.||+|++..+++.||||++...    .....+.+|+.+++.++|++ |+++++++....     ..
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~~~~   79 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHEN-IIGLLDILRPPSPEDFNDV   79 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcc-hhhhhhhhcccCcccccce
Confidence            589999999999999999999888999999988753    23456889999999999999 999999887765     78


Q ss_pred             EEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          273 CFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      |+||||+++++...+.+  .+++..++.++.||+.||+|||++||+||||||+|||++ .++.++|+|||++........
T Consensus        80 ~lv~e~~~~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~-~~~~~~L~dfg~~~~~~~~~~  158 (330)
T cd07834          80 YIVTELMETDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVN-SNCDLKICDFGLARGVDPDED  158 (330)
T ss_pred             EEEecchhhhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEc-CCCCEEEcccCceEeeccccc
Confidence            99999999755444443  388999999999999999999999999999999999999 567899999999874211000


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (330)
T cd07834         159 --------------------------------------------------------------------------------  158 (330)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (330)
T cd07834         159 --------------------------------------------------------------------------------  158 (330)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                       .........||..|+|||++.+...++.++|||||||++|+|++|.+
T Consensus       159 ---------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~  205 (330)
T cd07834         159 ---------------------------------EKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKP  205 (330)
T ss_pred             ---------------------------------ccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCC
Confidence                                             00001133578899999999776467999999999999999999999


Q ss_pred             CCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          591 PFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      ||.+.+. +.+..++...|.+............  .....   ...+......|..       ....++..+.+||.+||
T Consensus       206 pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~li~~~l  273 (330)
T cd07834         206 LFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEK--ARNYL---KSLPKKPKKPLSK-------LFPGASPEAIDLLEKML  273 (330)
T ss_pred             CcCCCCHHHHHHHHHHhcCCCChhHhhhccccc--hhhHH---hhcccCCcchhHH-------hcccCCHHHHHHHHHHc
Confidence            9988765 4566677777754322211110000  00000   0011111111211       12347889999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchhcch
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      .++|++|||++++++||||++++...+
T Consensus       274 ~~~P~~Rpt~~~ll~~~~~~~~~~~~~  300 (330)
T cd07834         274 VFDPKKRITADEALAHPYLAQLHDPED  300 (330)
T ss_pred             cCChhhCCCHHHHHhCccHHhhccccc
Confidence            999999999999999999998776533

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=1.3e-37  Score=330.29  Aligned_cols=142  Identities=24%  Similarity=0.355  Sum_probs=125.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      +.|.....||.|+||.||++.+..++..||||.+...  ...+.+.+|+.+++.++|+| |+++++.+..++..|+||||
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~-ii~~~~~~~~~~~~~lv~e~  100 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHEN-VVDMYNSYLVGDELWVVMEF  100 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCc-HHHHHHheecCCeEEEEEeC
Confidence            3455567899999999999999889999999987643  23455789999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++++..+..  .+++..+..++.||+.||.|||++||+||||||+||+++ +++.++|+|||++..
T Consensus       101 ~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~-~~~~~kL~dfg~~~~  167 (292)
T cd06658         101 LEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLT-SDGRIKLSDFGFCAQ  167 (292)
T ss_pred             CCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEc-CCCCEEEccCcchhh
Confidence            99998877653  478999999999999999999999999999999999998 667899999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=6.5e-37  Score=320.53  Aligned_cols=142  Identities=25%  Similarity=0.379  Sum_probs=119.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHH-HHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRM-LERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~i-L~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ++|++.+.||+|+||.||+|.+..+|+.||||++.....   ...+..|+.+ ++.+.|+| |+++++++..+...|+||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-iv~~~~~~~~~~~~~lv~   79 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPY-TVTFYGALFREGDVWICM   79 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCC-eeeeeEEEecCCcEEEEh
Confidence            479999999999999999999999999999999875422   2345556665 55567777 999999999999999999


Q ss_pred             eccCCCChHHHhh------cCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK------EIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~------~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+++.+...+..      .+++..+..++.||+.||.|||++ +++||||||+|||++ .++.+||+|||++..
T Consensus        80 e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~-~~~~~kl~dfg~~~~  153 (283)
T cd06617          80 EVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLIN-RNGQVKLCDFGISGY  153 (283)
T ss_pred             hhhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEEC-CCCCEEEeecccccc
Confidence            9998754444322      378899999999999999999997 999999999999999 667899999999864

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.9e-39  Score=348.79  Aligned_cols=248  Identities=31%  Similarity=0.470  Sum_probs=209.3

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      |.-++.||.|+||-||.|++..+.+.||||.+.-..     ....+..|+..|.++.||| ++.+-+||......|||||
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPn-tieYkgCyLre~TaWLVME  106 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPN-TIEYKGCYLREHTAWLVME  106 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCC-cccccceeeccchHHHHHH
Confidence            555668999999999999999999999999987332     2356889999999999999 9999999999999999999


Q ss_pred             ccCCC---ChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcccc
Q 004835          278 HVKHD---RPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQAT  354 (728)
Q Consensus       278 ~~~~~---~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~  354 (728)
                      ||-|.   +++...+.+.+.++..|..+.+.||+|||+.+.||||||..|||+. +.+.+||+|||.|.+.         
T Consensus       107 YClGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLs-e~g~VKLaDFGSAsi~---------  176 (948)
T KOG0577|consen  107 YCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLS-EPGLVKLADFGSASIM---------  176 (948)
T ss_pred             HHhccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceEec-CCCeeeeccccchhhc---------
Confidence            99885   3455567799999999999999999999999999999999999999 7888999999998641         


Q ss_pred             CCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCC
Q 004835          355 LPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRT  434 (728)
Q Consensus       355 ~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (728)
                             +|                                                                       
T Consensus       177 -------~P-----------------------------------------------------------------------  178 (948)
T KOG0577|consen  177 -------AP-----------------------------------------------------------------------  178 (948)
T ss_pred             -------Cc-----------------------------------------------------------------------
Confidence                   00                                                                       


Q ss_pred             cccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCC
Q 004835          435 PAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPS  514 (728)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (728)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (948)
T KOG0577|consen  179 --------------------------------------------------------------------------------  178 (948)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhc--cCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFR--SQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       515 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~--~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                       ...+||||+||||||++.  .++|+-++||||||++..||.-.++|+
T Consensus       179 ---------------------------------AnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPl  225 (948)
T KOG0577|consen  179 ---------------------------------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL  225 (948)
T ss_pred             ---------------------------------hhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCc
Confidence                                             126789999999999964  466899999999999999999999998


Q ss_pred             CCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          593 FGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       593 ~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      +..+. ..++.|.+                           ..-|.+....|              ++.+..|++.||..
T Consensus       226 FnMNAMSALYHIAQ---------------------------NesPtLqs~eW--------------S~~F~~Fvd~CLqK  264 (948)
T KOG0577|consen  226 FNMNAMSALYHIAQ---------------------------NESPTLQSNEW--------------SDYFRNFVDSCLQK  264 (948)
T ss_pred             cCchHHHHHHHHHh---------------------------cCCCCCCCchh--------------HHHHHHHHHHHHhh
Confidence            87665 55666654                           11233333344              67899999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccchh
Q 004835          672 NPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      -|.+|||++++|+|+|...-+.
T Consensus       265 ipqeRptse~ll~H~fv~R~Rp  286 (948)
T KOG0577|consen  265 IPQERPTSEELLKHRFVLRERP  286 (948)
T ss_pred             CcccCCcHHHHhhcchhccCCC
Confidence            9999999999999999875443

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=1e-36  Score=318.50  Aligned_cols=140  Identities=31%  Similarity=0.447  Sum_probs=124.0

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeC--CeeEEEE
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCG--DSDCFVL  276 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~--~~~~LV~  276 (728)
                      |++.+.||.|+||.||+|.+..+|+.||+|++....    ....+.+|+.+++.+.|++ ++++++++...  ...++||
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~~lv~   79 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPN-IVRLKEIVTSKGKGSIYMVF   79 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCC-eeeheeeEecCCCCcEEEEe
Confidence            788999999999999999999899999999987542    2345778999999999999 99999999887  8999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+++++...+.+   .+++..++.++.||+.||+|||++|++|+||||+||+++ +++.++|+|||++..
T Consensus        80 e~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~-~~~~~~l~d~g~~~~  149 (287)
T cd07840          80 EYMDHDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILIN-NDGVLKLADFGLARP  149 (287)
T ss_pred             ccccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEc-CCCCEEEccccceee
Confidence            9999765555543   388999999999999999999999999999999999999 677899999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=6.2e-37  Score=330.53  Aligned_cols=291  Identities=25%  Similarity=0.350  Sum_probs=212.5

Q ss_pred             CCeeE-EEEecccCceEEEEEEEcCCCeEEEEEeccCcCch----------------hHHHHHHHHHHhcCCCCceEEec
Q 004835          201 ESFIV-EEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK----------------HYVSNELRMLERFGGKNFIIKYE  263 (728)
Q Consensus       201 ~~y~i-~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~----------------~~~~~Ei~iL~~L~h~n~Ivkl~  263 (728)
                      ++|.. .+.||.|+||+||+|.+..+++.||||++......                ..+.+|+.++..+.|++ |++++
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~   86 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHEN-IMGLV   86 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcc-eeeee
Confidence            46654 57799999999999999989999999987643221                14678999999999998 99999


Q ss_pred             ceEEeCCeeEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeec
Q 004835          264 GCFKCGDSDCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNL  341 (728)
Q Consensus       264 ~~~~~~~~~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGl  341 (728)
                      +++..++..|+||||+.+++...+..  .+++..+..++.||+.||.|||+.||+||||||+||+++ ..+.++|+|||+
T Consensus        87 ~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~-~~~~~kl~dfg~  165 (335)
T PTZ00024         87 DVYVEGDFINLVMDIMASDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFIN-SKGICKIADFGL  165 (335)
T ss_pred             EEEecCCcEEEEEeccccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEEC-CCCCEEECCccc
Confidence            99999999999999999766555543  388999999999999999999999999999999999999 666799999999


Q ss_pred             cccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCC
Q 004835          342 AMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGS  421 (728)
Q Consensus       342 A~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~  421 (728)
                      +.............                                                 .+.+             
T Consensus       166 ~~~~~~~~~~~~~~-------------------------------------------------~~~~-------------  183 (335)
T PTZ00024        166 ARRYGYPPYSDTLS-------------------------------------------------KDET-------------  183 (335)
T ss_pred             eeeccccccccccc-------------------------------------------------cccc-------------
Confidence            87532111100000                                                 0000             


Q ss_pred             CccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCc
Q 004835          422 GITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGI  501 (728)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (728)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (335)
T PTZ00024        184 --------------------------------------------------------------------------------  183 (335)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHH
Q 004835          502 AVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVT  581 (728)
Q Consensus       502 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~i  581 (728)
                                                              ...........++..|+|||++.+...++.++|||||||+
T Consensus       184 ----------------------------------------~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~  223 (335)
T PTZ00024        184 ----------------------------------------MQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCI  223 (335)
T ss_pred             ----------------------------------------ccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHH
Confidence                                                    0000011123478899999999776667899999999999


Q ss_pred             HHHHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccC--CCCCCchhhhhhhccCCcccccCc
Q 004835          582 LLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKS--LPPINLPEWCKLITKRPDFLEVIP  658 (728)
Q Consensus       582 l~eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  658 (728)
                      +|+|++|.+||.+... +.+..++..+|.+....          |+........  ........+.       ......+
T Consensus       224 l~el~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  286 (335)
T PTZ00024        224 FAELLTGKPLFPGENEIDQLGRIFELLGTPNEDN----------WPQAKKLPLYTEFTPRKPKDLK-------TIFPNAS  286 (335)
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHhCCCchhh----------CcchhhcccccccCcCCcccHH-------HhCcCCC
Confidence            9999999999988765 45667777777543211          1111000000  0000000111       1123457


Q ss_pred             hhHHHHHHHhcccCCCCCCCHHHHhcCCCCccch
Q 004835          659 SSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       659 ~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      ..+.+||.+||..+|++|||++|+|.||||+...
T Consensus       287 ~~~~~li~~~l~~~P~~R~s~~~~l~~~~~~~~~  320 (335)
T PTZ00024        287 DDAIDLLQSLLKLNPLERISAKEALKHEYFKSDP  320 (335)
T ss_pred             hHHHHHHHHHcCCCchhccCHHHHhcCcccCCCC
Confidence            8899999999999999999999999999998653

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=9.8e-37  Score=329.13  Aligned_cols=289  Identities=24%  Similarity=0.351  Sum_probs=212.4

Q ss_pred             CeeEEEEecccCceEEEEEEEcCC--CeEEEEEeccCcC----chhHHHHHHHHHHhcC-CCCceEEecceEEe----CC
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKND--GTVVAIKCPHANA----SKHYVSNELRMLERFG-GKNFIIKYEGCFKC----GD  270 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~--g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~----~~  270 (728)
                      +|.+.+.||+|+||.||+|++..+  +..||||++....    ....+.+|+.++.++. |++ |+++++++..    ..
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~-iv~~~~~~~~~~~~~~   79 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKN-ITCLYDMDIVFPGNFN   79 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCC-hheeeeeeeeccccCC
Confidence            589999999999999999999877  8999999876421    2345778999999995 777 9998886542    24


Q ss_pred             eeEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          271 SDCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      ..|+++||+.+++...+..  .+++..++.++.||+.||.|||++||+||||||+|||++ .++.++|+|||++......
T Consensus        80 ~~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~-~~~~~kl~Dfg~a~~~~~~  158 (332)
T cd07857          80 ELYLYEELMEADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVN-ADCELKICDFGLARGFSEN  158 (332)
T ss_pred             cEEEEEecccCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEc-CCCCEEeCcCCCceecccc
Confidence            5789999998765555542  488999999999999999999999999999999999999 6678999999998742100


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                      ...                                                                             
T Consensus       159 ~~~-----------------------------------------------------------------------------  161 (332)
T cd07857         159 PGE-----------------------------------------------------------------------------  161 (332)
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (332)
T cd07857         162 --------------------------------------------------------------------------------  161 (332)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                         ........+||..|+|||++.+...++.++||||+||++|+|++|
T Consensus       162 -----------------------------------~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g  206 (332)
T cd07857         162 -----------------------------------NAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGR  206 (332)
T ss_pred             -----------------------------------ccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhC
Confidence                                               000011346899999999986655578999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCC-CCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          589 RTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRES-SFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       589 ~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      .+||.+.+. ..+..++..+|.+.......+..... .+..   .....+..   .+       ......++..+.+||.
T Consensus       207 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~-------~~~~~~~~~~~~~li~  273 (332)
T cd07857         207 KPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIR---SLPNIPKK---PF-------ESIFPNANPLALDLLE  273 (332)
T ss_pred             CcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHH---hccccCCc---ch-------HhhCCCCCHHHHHHHH
Confidence            999987664 56777888888654322222111000 0000   00000000   00       0112345789999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccchhcchH
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~  697 (728)
                      +||..||++|||+.+++.||||+..+....+
T Consensus       274 ~~l~~~P~~R~t~~~ll~~~~~~~~~~~~~~  304 (332)
T cd07857         274 KLLAFDPTKRISVEEALEHPYLAIWHDPDDE  304 (332)
T ss_pred             HHccCCcccCCCHHHHhcChhhhhhcCcccc
Confidence            9999999999999999999999988764333

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-38  Score=332.01  Aligned_cols=271  Identities=22%  Similarity=0.314  Sum_probs=224.3

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      .....+|.++.+||+|+||.|.+|..+.+.+.||||++++..     ..+--..|-++|.....|++++++..||++-+.
T Consensus       345 ~i~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDR  424 (683)
T KOG0696|consen  345 RIKATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDR  424 (683)
T ss_pred             ceeecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhh
Confidence            334678999999999999999999999999999999988642     233345688888888889999999999999999


Q ss_pred             eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          272 DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      +|+||||+.||.|-..++   ++.+..+..|+.+|+-||-|||++|||+||||.+|||+| ..+++||+|||+++..--.
T Consensus       425 LyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd-~eGHiKi~DFGmcKEni~~  503 (683)
T KOG0696|consen  425 LYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLD-SEGHIKIADFGMCKENIFD  503 (683)
T ss_pred             eeeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEec-cCCceEeeecccccccccC
Confidence            999999999998876654   488999999999999999999999999999999999999 5567999999999741000


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       504 --------------------------------------------------------------------------------  503 (683)
T KOG0696|consen  504 --------------------------------------------------------------------------------  503 (683)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       504 --------------------------------------------------------------------------------  503 (683)
T KOG0696|consen  504 --------------------------------------------------------------------------------  503 (683)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                          ..-+...+|||.|+|||++. ..+|+.++||||+||+||||+.|
T Consensus       504 ------------------------------------~~TTkTFCGTPdYiAPEIi~-YqPYgksvDWWa~GVLLyEmlaG  546 (683)
T KOG0696|consen  504 ------------------------------------GVTTKTFCGTPDYIAPEIIA-YQPYGKSVDWWAFGVLLYEMLAG  546 (683)
T ss_pred             ------------------------------------CcceeeecCCCcccccceEE-ecccccchhHHHHHHHHHHHHcC
Confidence                                                00112578999999999994 45579999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          589 RTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       589 ~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      ++||.|++++.+.+.+.              ..+                            ..++..++.++.+++..+
T Consensus       547 QpPFdGeDE~elF~aI~--------------ehn----------------------------vsyPKslSkEAv~ickg~  584 (683)
T KOG0696|consen  547 QPPFDGEDEDELFQAIM--------------EHN----------------------------VSYPKSLSKEAVAICKGL  584 (683)
T ss_pred             CCCCCCCCHHHHHHHHH--------------Hcc----------------------------CcCcccccHHHHHHHHHH
Confidence            99999999877765432              122                            334456789999999999


Q ss_pred             cccCCCCCCC-----HHHHhcCCCCccchhcchHhHhhhccccc
Q 004835          669 LTVNPRLRIS-----AEDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       669 L~~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      |+..|.+|..     -.++-.||||+.|.|.....+-+.+...+
T Consensus       585 ltK~P~kRLGcg~~ge~di~~H~FFR~iDWek~E~~eiqPPfkP  628 (683)
T KOG0696|consen  585 LTKHPGKRLGCGPEGERDIREHPFFRRIDWEKLERREIQPPFKP  628 (683)
T ss_pred             hhcCCccccCCCCccccchhhCcchhhccHHHHhhccCCCCCCC
Confidence            9999999986     45788999999999876665555444433

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=1.1e-36  Score=314.14  Aligned_cols=141  Identities=22%  Similarity=0.304  Sum_probs=125.2

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +|++.+.||+|+||.||++....+|+.||+|.+...    .....+.+|+.++++++|++ |+++++++...+..|+|+|
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPN-IVQYQESFEENGNLYIVMD   79 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCC-eeeeEeeecCCCeEEEEEe
Confidence            589999999999999999999999999999987632    23346789999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.++.+.....     .+++..+..++.|++.||.|||++|++|+||+|+|||++ .++.++|+|||++..
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~-~~~~~~l~d~~~~~~  150 (256)
T cd08218          80 YCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLT-KDGTIKLGDFGIARV  150 (256)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEc-CCCCEEEeeccceee
Confidence            999887765542     267889999999999999999999999999999999998 666799999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=9.3e-37  Score=320.95  Aligned_cols=134  Identities=23%  Similarity=0.366  Sum_probs=112.2

Q ss_pred             EecccCceEEEEEEEcCCCeEEEEEeccCcCc-----hhHHHHHHH---HHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHYVSNELR---MLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----~~~~~~Ei~---iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      .||+|+||.||+|.+..+++.||+|++.....     ...+..|..   ++....|++ |+.+++++...+..|+||||+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~v~e~~   79 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPF-IVCMSYAFHTPDKLSFILDLM   79 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCc-EeeeeeeeecCCEEEEEEecC
Confidence            37999999999999988999999998864321     122334433   344456777 999999999999999999999


Q ss_pred             CCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          280 KHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       280 ~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      .++.+..+..   .+++..++.++.|++.||.|||+.+|+||||||+||+++ .++.++|+|||++.
T Consensus        80 ~g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~-~~~~~kl~dfg~~~  145 (278)
T cd05606          80 NGGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLD-EHGHVRISDLGLAC  145 (278)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEEC-CCCCEEEccCcCcc
Confidence            9998876553   388999999999999999999999999999999999999 66789999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.9e-37  Score=319.77  Aligned_cols=141  Identities=28%  Similarity=0.410  Sum_probs=125.5

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcC---CCCceEEecceEEeCCeeEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFG---GKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~---h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      .|++.+.||.|+||.||+|.+..+++.||+|.+....   ....+.+|+.+++.+.   |++ ++++++++..+...|+|
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~-vi~~~~~~~~~~~~~lv   80 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPN-ITKYYGSYLKGPRLWII   80 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCC-eeeEeeeeeeCCEEEEE
Confidence            5888899999999999999999899999999986432   3456788999999997   888 99999999999999999


Q ss_pred             EeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++++..+.+  .+++..+..++.|++.||.|||+.||+||||+|+||+++ +.+.++|+|||++..
T Consensus        81 ~e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~-~~~~~~l~dfg~~~~  150 (277)
T cd06917          81 MEYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANILVT-NTGNVKLCDFGVAAL  150 (277)
T ss_pred             EecCCCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEc-CCCCEEEccCCceee
Confidence            99999988877654  378899999999999999999999999999999999999 677899999999864

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=1.4e-36  Score=318.80  Aligned_cols=147  Identities=24%  Similarity=0.355  Sum_probs=125.9

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhc-CCCCceEEecceEE-----e
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERF-GGKNFIIKYEGCFK-----C  268 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~-----~  268 (728)
                      +....++|++.+.||+|+||.||+|.+..+++.||+|++.... ....+.+|+.++..+ +|+| |+++++++.     .
T Consensus        13 ~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~-i~~~~~~~~~~~~~~   91 (286)
T cd06638          13 FPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPN-VVKFYGMYYKKDVKN   91 (286)
T ss_pred             CCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCC-eeeeeeeeeecccCC
Confidence            3345679999999999999999999999999999999876432 345677899999999 5888 999998873     4


Q ss_pred             CCeeEEEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeec
Q 004835          269 GDSDCFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNL  341 (728)
Q Consensus       269 ~~~~~LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGl  341 (728)
                      +...++||||++++++..+..       .+++..+..++.|++.||.|||+++|+||||||+||+++ +.+.++|+|||+
T Consensus        92 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~-~~~~~kl~dfg~  170 (286)
T cd06638          92 GDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLT-TEGGVKLVDFGV  170 (286)
T ss_pred             CCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEEC-CCCCEEEccCCc
Confidence            567899999999998876532       377888999999999999999999999999999999999 556799999999


Q ss_pred             ccc
Q 004835          342 AMV  344 (728)
Q Consensus       342 A~~  344 (728)
                      +..
T Consensus       171 ~~~  173 (286)
T cd06638         171 SAQ  173 (286)
T ss_pred             eee
Confidence            864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=322.35  Aligned_cols=134  Identities=16%  Similarity=0.131  Sum_probs=117.2

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----hhHHHHHHHHHHhcCCCCceEEecceEEe----CCeeEEEEe
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHYVSNELRMLERFGGKNFIIKYEGCFKC----GDSDCFVLE  277 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~----~~~~~LV~E  277 (728)
                      ..||+|++|.||+|.+  +|+.||||.+.....     .+.+.+|+.+|.+++|+| |+++++++.+    ....++|||
T Consensus        26 ~~i~~g~~~~v~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-Iv~~~g~~~~~~~~~~~~~lv~E  102 (283)
T PHA02988         26 VLIKENDQNSIYKGIF--NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNN-ILKIYGFIIDIVDDLPRLSLILE  102 (283)
T ss_pred             eEEeeCCceEEEEEEE--CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCC-EEEEeeeEEecccCCCceEEEEE
Confidence            4789999999999998  699999999875322     345679999999999998 9999999876    357899999


Q ss_pred             ccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.+++|..+..   .+++.....++.|++.||.|||+. +++||||||+|||++ +++.+||+|||+++.
T Consensus       103 y~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~-~~~~~kl~dfg~~~~  172 (283)
T PHA02988        103 YCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVT-ENYKLKIICHGLEKI  172 (283)
T ss_pred             eCCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEEC-CCCcEEEcccchHhh
Confidence            999998887763   388889999999999999999984 999999999999999 667899999999864

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.3e-36  Score=312.70  Aligned_cols=141  Identities=27%  Similarity=0.367  Sum_probs=125.5

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-------chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +|+..+.||+|+||.||+|....++..||+|.+....       ....+.+|+.++..++|++ |+++++++..+...|+
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~-i~~~~~~~~~~~~~~l   79 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPN-IVQYLGTEREEDNLYI   79 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCC-chheeeeEecCCeEEE
Confidence            4778899999999999999998889999999876432       2346788999999999998 9999999999999999


Q ss_pred             EEeccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||++++++..+...   +++..+..++.||+.||+|||+.||+|+||+|+||+++ .++.++|+|||++..
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~-~~~~~kl~d~~~~~~  151 (258)
T cd06632          80 FLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVD-TNGVVKLADFGMAKQ  151 (258)
T ss_pred             EEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEC-CCCCEEEccCcccee
Confidence            9999999888776543   78889999999999999999999999999999999999 667899999999864

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.8e-37  Score=333.73  Aligned_cols=287  Identities=26%  Similarity=0.401  Sum_probs=212.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCC-----
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD-----  270 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~-----  270 (728)
                      .++|++.+.||+|+||.||+|.+..+|..||||++....    ....+.+|+.+++.+.|+| |+++++++....     
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          14 PDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHEN-VIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             ccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCC-ccceeeeecCCcccccc
Confidence            458999999999999999999999999999999886432    2345778999999999999 999999887553     


Q ss_pred             -eeEEEEeccCCCChHHHh--hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccC
Q 004835          271 -SDCFVLEHVKHDRPEVLK--KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFD  347 (728)
Q Consensus       271 -~~~LV~E~~~~~~l~~l~--~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~  347 (728)
                       ..|+||||+++ ++..+.  ..+++..++.++.||+.||.|||+.||+||||||+||+++ .++.++|+|||++.....
T Consensus        93 ~~~~lv~e~~~~-~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~-~~~~~kl~dfg~~~~~~~  170 (343)
T cd07880          93 HDFYLVMPFMGT-DLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVN-EDCELKILDFGLARQTDS  170 (343)
T ss_pred             ceEEEEEecCCC-CHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEc-CCCCEEEeeccccccccc
Confidence             45899999954 454443  3589999999999999999999999999999999999999 667799999999863100


Q ss_pred             CCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccc
Q 004835          348 GSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAK  427 (728)
Q Consensus       348 ~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~  427 (728)
                      .                                                                               
T Consensus       171 ~-------------------------------------------------------------------------------  171 (343)
T cd07880         171 E-------------------------------------------------------------------------------  171 (343)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCC
Q 004835          428 EATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAG  507 (728)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (343)
T cd07880         172 --------------------------------------------------------------------------------  171 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhc
Q 004835          508 LMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI  587 (728)
Q Consensus       508 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLlt  587 (728)
                                                              .....+++.|+|||++.+...++.++|||||||++|+|++
T Consensus       172 ----------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~  211 (343)
T cd07880         172 ----------------------------------------MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLT  211 (343)
T ss_pred             ----------------------------------------ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHh
Confidence                                                    0022468889999999665557899999999999999999


Q ss_pred             CCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          588 GRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       588 G~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      |..||.+... ..+..++...+.........+.....  ..   ....++......+       ..+...++..+.+||.
T Consensus       212 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~li~  279 (343)
T cd07880         212 GKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDA--KN---YVKKLPRFRKKDF-------RSLLPNANPLAVNVLE  279 (343)
T ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhH--HH---HHHhccccCcchH-------HHhccCCChHHHHHHH
Confidence            9999987665 44555555544322111111110000  00   0000010000000       1123467889999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccchhcchHhHh
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKL  700 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~~  700 (728)
                      +||..||++|||+.+++.||||+.+.+.......
T Consensus       280 ~~l~~dP~~R~t~~~~l~~~~~~~~~~~~~~~~~  313 (343)
T cd07880         280 KMLVLDAESRITAAEALAHPYFEEFHDPEDETEA  313 (343)
T ss_pred             HHcCCChhhCCCHHHHhcCccHhhhcCcccccCC
Confidence            9999999999999999999999998776554433

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=4.5e-38  Score=312.11  Aligned_cols=290  Identities=27%  Similarity=0.451  Sum_probs=233.7

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcC-CCCceEEecceEEeCC--eeEEE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFG-GKNFIIKYEGCFKCGD--SDCFV  275 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~~--~~~LV  275 (728)
                      +.++|++.+++|+|.|++||.|....+++.++||+++.-. ...+.+|+.||+.|. |+| |+++++...+..  .+.||
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk-kkKIkREikIL~nL~gg~N-Ii~L~DiV~Dp~SktpaLi  113 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK-KKKIKREIKILQNLRGGPN-IIKLLDIVKDPESKTPSLI  113 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHH-HHHHHHHHHHHHhccCCCC-eeehhhhhcCccccCchhH
Confidence            4679999999999999999999999999999999986543 445789999999998 666 999999988654  57899


Q ss_pred             EeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccC
Q 004835          276 LEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATL  355 (728)
Q Consensus       276 ~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~  355 (728)
                      +||+.+.....+...++...++.++.+++.||.|+|++||+|||+||.|++||...-.++|+|+|+|.+...+.      
T Consensus       114 FE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~------  187 (338)
T KOG0668|consen  114 FEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGK------  187 (338)
T ss_pred             hhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCCCc------
Confidence            99999999998888899999999999999999999999999999999999999888889999999998632111      


Q ss_pred             CCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCc
Q 004835          356 PGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTP  435 (728)
Q Consensus       356 ~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (728)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (338)
T KOG0668|consen  188 --------------------------------------------------------------------------------  187 (338)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCC
Q 004835          436 AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSD  515 (728)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  515 (728)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (338)
T KOG0668|consen  188 --------------------------------------------------------------------------------  187 (338)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCC-
Q 004835          516 LSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-  594 (728)
Q Consensus       516 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~-  594 (728)
                                                     ..+-.+.+..|--||.|.....|+.+-|+|||||+|..|+..+-||+. 
T Consensus       188 -------------------------------eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG  236 (338)
T KOG0668|consen  188 -------------------------------EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHG  236 (338)
T ss_pred             -------------------------------eeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCC
Confidence                                           112345678899999998888899999999999999999999999874 


Q ss_pred             -CChHHHHHHHHHhCCchHHHHHHhccC--CCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          595 -DPEQNIKDIAKLRGSEDLWEVAKLHNR--ESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       595 -~~~~~l~~i~~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                       ++.+++..|.+.+|+.++.....-..-  ...|..-+      -.-....|.......  -..-+++++.|||.++|.+
T Consensus       237 ~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~------~~~~rk~w~~Fi~~~--n~hl~~peaiDlldklLrY  308 (338)
T KOG0668|consen  237 HDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDIL------GRHSRKPWSRFINSE--NQHLVSPEAIDLLDKLLRY  308 (338)
T ss_pred             CCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHh------hccccccHHHhCCcc--ccccCChHHHHHHHHHHhh
Confidence             345899999999999887764322111  11111111      011223444433221  2234578999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccchhcc
Q 004835          672 NPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      |-.+|+||.|++.||||..+.+..
T Consensus       309 DHqeRlTakEam~HpyF~~~~~~~  332 (338)
T KOG0668|consen  309 DHQERLTAKEAMAHPYFAPVREAE  332 (338)
T ss_pred             ccccccchHHHhcCchHHHHHHHh
Confidence            999999999999999999877654

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=1.3e-36  Score=313.11  Aligned_cols=142  Identities=22%  Similarity=0.296  Sum_probs=126.0

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +|.+.+.||.|+||.||+|.+..+|..||+|.+...    .....+.+|+.+++.++|++ |+++++++......|+|+|
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~-i~~~~~~~~~~~~~~lv~e   79 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPN-IVTFFASFQENGRLFIVME   79 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCC-hhhhhheeccCCeEEEEEe
Confidence            589999999999999999999999999999998643    33456789999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.++.+..+..     .+++..+..++.|++.||.|||+.+|+|+||||+||+++.++..++|+|||.+..
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~  151 (257)
T cd08225          80 YCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQ  151 (257)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchh
Confidence            999888766543     2688899999999999999999999999999999999985556679999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=1.5e-36  Score=321.26  Aligned_cols=144  Identities=26%  Similarity=0.410  Sum_probs=125.4

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCC----
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD----  270 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~----  270 (728)
                      ..++|++.+.||+|+||.||+|.+..+|+.||+|.+....    ....+.+|+.+++.++|+| |+++++++....    
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~-i~~~~~~~~~~~~~~~   83 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRN-IVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCC-eeeeeheecCcchhhh
Confidence            3568999999999999999999999899999999986432    2345678999999999998 999998887554    


Q ss_pred             ------eeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeec
Q 004835          271 ------SDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNL  341 (728)
Q Consensus       271 ------~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGl  341 (728)
                            ..|+|+||++++++..+..   .+++..+..++.||+.||+|||+.||+||||||+||+++ +++.+||+|||+
T Consensus        84 ~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~-~~~~~kl~dfg~  162 (302)
T cd07864          84 FKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLN-NKGQIKLADFGL  162 (302)
T ss_pred             ccccCCcEEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEC-CCCcEEeCcccc
Confidence                  7899999999876655543   378999999999999999999999999999999999999 667899999999


Q ss_pred             ccc
Q 004835          342 AMV  344 (728)
Q Consensus       342 A~~  344 (728)
                      +..
T Consensus       163 ~~~  165 (302)
T cd07864         163 ARL  165 (302)
T ss_pred             ccc
Confidence            864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-36  Score=317.90  Aligned_cols=271  Identities=30%  Similarity=0.424  Sum_probs=210.4

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      |.+.+.||.|++|.||+|.+..+|+.+|+|.+....    ....+.+|+.+++++.|++ |+++++.+..+...++|+||
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~v~e~   79 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPN-IIKLLDVFRHKGDLYLVFEF   79 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCC-cchHHHhhccCCCEEEEEec
Confidence            677889999999999999998899999999886432    2356778999999999998 99999999999999999999


Q ss_pred             cCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccC
Q 004835          279 VKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATL  355 (728)
Q Consensus       279 ~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~  355 (728)
                      +++++...+..   .+++..+..++.||+.||.|||+++|+|+||||+||+++ .++.++|+|||.+.......      
T Consensus        80 ~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~-~~~~~~l~df~~~~~~~~~~------  152 (283)
T cd05118          80 MDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLIN-TEGVLKLADFGLARSFGSPV------  152 (283)
T ss_pred             cCCCHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEEC-CCCcEEEeeeeeeEecCCCc------
Confidence            99876665544   478999999999999999999999999999999999999 66779999999986421000      


Q ss_pred             CCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCc
Q 004835          356 PGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTP  435 (728)
Q Consensus       356 ~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (728)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (283)
T cd05118         153 --------------------------------------------------------------------------------  152 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCC
Q 004835          436 AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSD  515 (728)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  515 (728)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (283)
T cd05118         153 --------------------------------------------------------------------------------  152 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 004835          516 LSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD  595 (728)
Q Consensus       516 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~  595 (728)
                                                    .......++..|+|||.+.+...++.++|||||||++|+|++|+.||.+.
T Consensus       153 ------------------------------~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~  202 (283)
T cd05118         153 ------------------------------RPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGK  202 (283)
T ss_pred             ------------------------------ccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence                                          00012346788999999976645799999999999999999999999876


Q ss_pred             Ch-HHHHHHHHHhCCchHHHHHHhcc----CCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          596 PE-QNIKDIAKLRGSEDLWEVAKLHN----RESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       596 ~~-~~l~~i~~~~G~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      +. +.+..+...+|.+..........    ....++.          ......       ......++..+.+||.+||.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-------~~~~~~~~~~~~~~i~~~l~  265 (283)
T cd05118         203 SEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPK----------KAGMPL-------PKLFPNASPQALDLLSQMLH  265 (283)
T ss_pred             CHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhcc----------ccccCH-------HHhhhhhCHHHHHHHHHHhc
Confidence            65 55666666666543222211111    0001110          000000       11224568899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCC
Q 004835          671 VNPRLRISAEDALKHEFF  688 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f  688 (728)
                      +||.+||++.++++||||
T Consensus       266 ~~P~~Rp~~~~ll~~~~~  283 (283)
T cd05118         266 YDPHKRITAEQALAHPYF  283 (283)
T ss_pred             cCcccCcCHHHHhhCCCC
Confidence            999999999999999998

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-36  Score=315.51  Aligned_cols=144  Identities=28%  Similarity=0.419  Sum_probs=125.8

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhc-CCCCceEEecceEEeCC------
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERF-GGKNFIIKYEGCFKCGD------  270 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~------  270 (728)
                      ..++|++.+.||.|+||.||+|.+..+++.|++|++.... ....+.+|+.+++++ .|+| |+++++++....      
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~-i~~~~~~~~~~~~~~~~~   82 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPN-IATFYGAFIKKNPPGNDD   82 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCC-hheEEEEEEecCCCCcce
Confidence            3578999999999999999999998889999999987543 345688999999999 5888 999999987544      


Q ss_pred             eeEEEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          271 SDCFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      ..|+||||+.++.+..+..       .+++..+..++.|++.||.|||++||+|+||+|+||+++ .++.++|+|||++.
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~-~~~~~~l~d~~~~~  161 (275)
T cd06608          83 QLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLT-KNAEVKLVDFGVSA  161 (275)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEc-cCCeEEECCCccce
Confidence            4899999999988766532       378899999999999999999999999999999999999 56789999999986


Q ss_pred             c
Q 004835          344 V  344 (728)
Q Consensus       344 ~  344 (728)
                      .
T Consensus       162 ~  162 (275)
T cd06608         162 Q  162 (275)
T ss_pred             e
Confidence            4

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=6.8e-37  Score=316.52  Aligned_cols=141  Identities=23%  Similarity=0.360  Sum_probs=127.0

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +|++.+.||.|+||.||+|.+..+++.||+|++...     .....+.+|+.++++++|+| |+++++++..+...|+|+
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~   79 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPF-LVNLWYSFQDEENMYLVV   79 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCC-hHHHHHhhcCCCeEEEEE
Confidence            589999999999999999999989999999988643     23456888999999999998 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.++.+.....   .+++..+..++.||+.||.|||++||+|+||+|+||+++ +++.++|+|||++..
T Consensus        80 e~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~-~~~~~~l~d~~~~~~  149 (258)
T cd05578          80 DLLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLD-EQGHVHITDFNIATK  149 (258)
T ss_pred             eCCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEc-CCCCEEEeecccccc
Confidence            9999998876653   488899999999999999999999999999999999999 667799999999864

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=2.3e-36  Score=314.15  Aligned_cols=142  Identities=22%  Similarity=0.333  Sum_probs=123.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-------chhHHHHHHHHHHhcCCCCceEEecceEEeC--Ce
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-------SKHYVSNELRMLERFGGKNFIIKYEGCFKCG--DS  271 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~--~~  271 (728)
                      .+|.+.+.||+|+||.||+|.+..+|+.||||.+....       ....+.+|+.+++++.|++ |+++++++...  ..
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~   80 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHER-IVQYYGCLRDPMERT   80 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCC-eeeEEeEeccCCCce
Confidence            47999999999999999999999999999999875321       1245778999999999999 99999988763  46


Q ss_pred             eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +++||||++++.+..+..   .+++..+..++.|++.||.|||+++|+|+||||+|||++ .++.++|+|||++..
T Consensus        81 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~-~~~~~~l~Dfg~~~~  155 (265)
T cd06652          81 LSIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRD-SVGNVKLGDFGASKR  155 (265)
T ss_pred             EEEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEec-CCCCEEECcCccccc
Confidence            889999999988876653   378888999999999999999999999999999999998 667899999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-38  Score=341.65  Aligned_cols=250  Identities=29%  Similarity=0.439  Sum_probs=210.8

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCC
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH  281 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~  281 (728)
                      .++||.|.||+||-|+++.+|+.||||++.+-    ....++.+|+.||+++.||. |+.+...|++.+..++|||-+.|
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPG-iV~le~M~ET~ervFVVMEKl~G  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPG-IVNLECMFETPERVFVVMEKLHG  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCC-eeEEEEeecCCceEEEEehhhcc
Confidence            57899999999999999999999999998753    34577899999999999998 99999999999999999999999


Q ss_pred             CChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEeeeccccccCCCCccccC
Q 004835          282 DRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLIDFNLAMVGFDGSFNQATL  355 (728)
Q Consensus       282 ~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~DFGlA~~~~~~~~~~~~~  355 (728)
                      +-|+.++.    ++++...++++.||+.||.|||-++|+|+||||+|||+.+.  -..+||||||+|+++...+++    
T Consensus       648 DMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFR----  723 (888)
T KOG4236|consen  648 DMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFR----  723 (888)
T ss_pred             hHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhhhh----
Confidence            99988764    49999999999999999999999999999999999999733  357899999999985443331    


Q ss_pred             CCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCc
Q 004835          356 PGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTP  435 (728)
Q Consensus       356 ~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (728)
                                                                                                      
T Consensus       724 --------------------------------------------------------------------------------  723 (888)
T KOG4236|consen  724 --------------------------------------------------------------------------------  723 (888)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCC
Q 004835          436 AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSD  515 (728)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  515 (728)
                                                                                                      
T Consensus       724 --------------------------------------------------------------------------------  723 (888)
T KOG4236|consen  724 --------------------------------------------------------------------------------  723 (888)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 004835          516 LSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD  595 (728)
Q Consensus       516 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~  595 (728)
                                                       ...||||.|+|||||...+ |+..-|+||+|||+|--+.|..||..+
T Consensus       724 ---------------------------------rsVVGTPAYLaPEVLrnkG-yNrSLDMWSVGVIiYVsLSGTFPFNEd  769 (888)
T KOG4236|consen  724 ---------------------------------RSVVGTPAYLAPEVLRNKG-YNRSLDMWSVGVIIYVSLSGTFPFNED  769 (888)
T ss_pred             ---------------------------------hhhcCCccccCHHHHhhcc-ccccccceeeeEEEEEEecccccCCCc
Confidence                                             1468999999999995555 699999999999999999999999765


Q ss_pred             ChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCC
Q 004835          596 PEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL  675 (728)
Q Consensus       596 ~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~  675 (728)
                      .+  +.+.++              +...-||                        +.-+.+++..+.|||..+|++.-++
T Consensus       770 Ed--IndQIQ--------------NAaFMyP------------------------p~PW~eis~~AidlIn~LLqVkm~k  809 (888)
T KOG4236|consen  770 ED--INDQIQ--------------NAAFMYP------------------------PNPWSEISPEAIDLINNLLQVKMRK  809 (888)
T ss_pred             cc--hhHHhh--------------ccccccC------------------------CCchhhcCHHHHHHHHHHHHHHHHH
Confidence            43  222121              1111122                        1223578999999999999999999


Q ss_pred             CCCHHHHhcCCCCccchhc
Q 004835          676 RISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       676 Rpta~e~L~Hp~f~~~~~~  694 (728)
                      |.+.+..|.|||+++...=
T Consensus       810 Rysvdk~lsh~Wlq~yq~w  828 (888)
T KOG4236|consen  810 RYSVDKSLSHPWLQDYQTW  828 (888)
T ss_pred             hcchHhhccchhhhcchHH
Confidence            9999999999999987643

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-36  Score=311.89  Aligned_cols=142  Identities=28%  Similarity=0.413  Sum_probs=128.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ++|++.+.||.|+||.||+|.+..+++.+|+|++....  ....+.+|+.++++++|++ |+++++++..+...|++|||
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~-i~~~~~~~~~~~~~~l~~e~   81 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPN-IVAYFGSYLRRDKLWIVMEY   81 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCC-hhceEEEEEeCCEEEEEEeC
Confidence            57999999999999999999998889999999987542  3456889999999999999 99999999999999999999


Q ss_pred             cCCCChHHHh----hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLK----KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~----~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++.+..+.    ..+++..+..++.|++.||+|||++||+|+||||+||+++ +++.++|+|||++..
T Consensus        82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~-~~~~~~l~d~g~~~~  150 (262)
T cd06613          82 CGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLT-EDGDVKLADFGVSAQ  150 (262)
T ss_pred             CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEEC-CCCCEEECccccchh
Confidence            9999887764    2488999999999999999999999999999999999999 667799999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=1.7e-36  Score=316.34  Aligned_cols=142  Identities=22%  Similarity=0.260  Sum_probs=125.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEc---CCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRK---NDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~---~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..+|++.+.||+|+||.||+|.+.   ..+..||+|.++....   ...+.+|+.++.+++|+| |+++++++..++..|
T Consensus         4 ~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~   82 (266)
T cd05064           4 NKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSN-IVRLEGVITRGNTMM   82 (266)
T ss_pred             hHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCC-cCeEEEEEecCCCcE
Confidence            357999999999999999999875   3467999999876532   345788999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          274 FVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      +||||++++++..+..    .+++..++.++.||+.||+|||++||+||||||+|||++ .++.++++|||.+.
T Consensus        83 lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~-~~~~~~l~dfg~~~  155 (266)
T cd05064          83 IVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVN-SDLVCKISGFRRLQ  155 (266)
T ss_pred             EEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEc-CCCcEEECCCcccc
Confidence            9999999998887653    378999999999999999999999999999999999998 66789999999765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=2.1e-36  Score=321.71  Aligned_cols=142  Identities=23%  Similarity=0.335  Sum_probs=122.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcC----------------CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKN----------------DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIK  261 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~----------------~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivk  261 (728)
                      ++|.+.++||+|+||.||+|.+..                ++..||+|++.....   ...+.+|+.++.++.|+| |++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~   83 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPN-IIR   83 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCC-eeE
Confidence            579999999999999999998632                345799999875432   346789999999999999 999


Q ss_pred             ecceEEeCCeeEEEEeccCCCChHHHhh----------------------cCChHHHHHHHHHHHHHHHHHHhCCcEecc
Q 004835          262 YEGCFKCGDSDCFVLEHVKHDRPEVLKK----------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRD  319 (728)
Q Consensus       262 l~~~~~~~~~~~LV~E~~~~~~l~~l~~----------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRD  319 (728)
                      +++++...+..|+||||+.++.+..+..                      .+++..+..++.||+.||.|||++||+|||
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~d  163 (304)
T cd05096          84 LLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRD  163 (304)
T ss_pred             EEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccC
Confidence            9999999999999999999988766542                      146677889999999999999999999999


Q ss_pred             CCCCceEeecCCCceEEEeeecccc
Q 004835          320 VKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       320 IKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+|||++ +++.+||+|||++..
T Consensus       164 lkp~Nill~-~~~~~kl~DfG~~~~  187 (304)
T cd05096         164 LATRNCLVG-ENLTIKIADFGMSRN  187 (304)
T ss_pred             cchhheEEc-CCccEEECCCcccee
Confidence            999999999 667899999999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=1.1e-36  Score=319.25  Aligned_cols=143  Identities=23%  Similarity=0.344  Sum_probs=124.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCC-----eEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDG-----TVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g-----~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      +++|++.+.||+|+||.||+|.....+     ..||+|.+.....   ...+.+|+.++..++|++ |+++++++.....
T Consensus         4 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~-i~~~~~~~~~~~~   82 (283)
T cd05048           4 LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPN-IVCLLGVCTKEQP   82 (283)
T ss_pred             hHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcc-cceEEEEEcCCCc
Confidence            457999999999999999999986554     7899999875432   345789999999999999 9999999998899


Q ss_pred             eEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC
Q 004835          272 DCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV  332 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~  332 (728)
                      .|++|||+.++.+..+..                   .+++..+..++.||+.||.|||++||+||||||+||+++ +++
T Consensus        83 ~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~-~~~  161 (283)
T cd05048          83 TCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVG-EGL  161 (283)
T ss_pred             eEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEc-CCC
Confidence            999999999888766542                   266788899999999999999999999999999999999 667


Q ss_pred             ceEEEeeecccc
Q 004835          333 KGYLIDFNLAMV  344 (728)
Q Consensus       333 ~~kL~DFGlA~~  344 (728)
                      .++|+|||++..
T Consensus       162 ~~~L~dfg~~~~  173 (283)
T cd05048         162 TVKISDFGLSRD  173 (283)
T ss_pred             cEEECCCcceee
Confidence            899999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=100.00  E-value=3.3e-38  Score=341.27  Aligned_cols=291  Identities=28%  Similarity=0.389  Sum_probs=226.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-hhHHHHHHHHHHhcCC-----CCceEEecceEEeCCeeEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-KHYVSNELRMLERFGG-----KNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-~~~~~~Ei~iL~~L~h-----~n~Ivkl~~~~~~~~~~~L  274 (728)
                      .+|.+....|+|-|++|.+|.+..-|..||||++..+.. ...=+.|++||++|+.     ..|++.|+..|...+++||
T Consensus       432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLCl  511 (752)
T KOG0670|consen  432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCL  511 (752)
T ss_pred             ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEE
Confidence            478999999999999999999998899999999987643 3334689999999974     3468999999999999999


Q ss_pred             EEeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          275 VLEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       275 V~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |+|-+...+.+.+.+.     |....++.|+.|++.||..|-..||+|.||||+|||++.....+||||||.|.......
T Consensus       512 VFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~ene  591 (752)
T KOG0670|consen  512 VFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSASFASENE  591 (752)
T ss_pred             EehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCcccccccccc
Confidence            9999998877776542     78899999999999999999999999999999999999777889999999986522111


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       592 --------------------------------------------------------------------------------  591 (752)
T KOG0670|consen  592 --------------------------------------------------------------------------------  591 (752)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       592 --------------------------------------------------------------------------------  591 (752)
T KOG0670|consen  592 --------------------------------------------------------------------------------  591 (752)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                            .+++.-+.+|+|||+++|-+ |+.+.|+||+||+||||+||+
T Consensus       592 --------------------------------------itPYLVSRFYRaPEIiLG~~-yd~~iD~WSvgctLYElYtGk  632 (752)
T KOG0670|consen  592 --------------------------------------ITPYLVSRFYRAPEIILGLP-YDYPIDTWSVGCTLYELYTGK  632 (752)
T ss_pred             --------------------------------------ccHHHHHHhccCcceeecCc-ccCCccceeeceeeEEeeccc
Confidence                                                  12445577899999999887 599999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhh-------------cccCCCCCCc-hhhhhhhccCCccc
Q 004835          590 TPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLY-------------AAKSLPPINL-PEWCKLITKRPDFL  654 (728)
Q Consensus       590 ~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~~~  654 (728)
                      ..|.|.+. ++|...|.+-|+.+...+.+..=...-|..++.             ....+....+ ..+...+...+.++
T Consensus       633 IlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~  712 (752)
T KOG0670|consen  633 ILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLP  712 (752)
T ss_pred             eecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCC
Confidence            99999776 778888999998665554443222222222211             0111122222 23333333333333


Q ss_pred             ccC---chhHHHHHHHhcccCCCCCCCHHHHhcCCCCcc
Q 004835          655 EVI---PSSLFDLVDKCLTVNPRLRISAEDALKHEFFAP  690 (728)
Q Consensus       655 ~~~---~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~  690 (728)
                      +.-   -.++.|||.+||..||++|+|..++|+||||..
T Consensus       713 deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~HpFi~~  751 (752)
T KOG0670|consen  713 DEQPKIVQQLRDLLDKMLILDPEKRITVNQALKHPFITE  751 (752)
T ss_pred             chhHHHHHHHHHHHHHHhccChhhcCCHHHHhcCCcccC
Confidence            332   357899999999999999999999999999974

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=3e-36  Score=318.15  Aligned_cols=145  Identities=21%  Similarity=0.318  Sum_probs=123.6

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcC-----CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeC
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~-----~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      .+.++|++.+.||+|+||.||+|..+.     .+..||+|.+.....   ...+.+|+.+++.++|++ |+++++++..+
T Consensus         3 ~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~   81 (288)
T cd05061           3 VSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHH-VVRLLGVVSKG   81 (288)
T ss_pred             ccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCC-eeeEEEEEcCC
Confidence            345789999999999999999997642     356899998764432   234678999999999998 99999999999


Q ss_pred             CeeEEEEeccCCCChHHHhhc-------------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEE
Q 004835          270 DSDCFVLEHVKHDRPEVLKKE-------------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYL  336 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~~-------------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL  336 (728)
                      ...|+||||+.++.+..+.+.             .....+..++.||+.||.|||+++|+||||||+|||++ .++.++|
T Consensus        82 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~-~~~~~~L  160 (288)
T cd05061          82 QPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVA-HDFTVKI  160 (288)
T ss_pred             CCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEc-CCCcEEE
Confidence            999999999999888777542             24567888999999999999999999999999999999 6678999


Q ss_pred             Eeeecccc
Q 004835          337 IDFNLAMV  344 (728)
Q Consensus       337 ~DFGlA~~  344 (728)
                      +|||+++.
T Consensus       161 ~Dfg~~~~  168 (288)
T cd05061         161 GDFGMTRD  168 (288)
T ss_pred             CcCCcccc
Confidence            99999864

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=2.3e-36  Score=319.17  Aligned_cols=141  Identities=23%  Similarity=0.339  Sum_probs=124.0

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      .|...+.||.|++|.||+|.+..+++.||+|.+....  ....+.+|+.+++.+.|++ |+++++++..++..|+|+||+
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~-vv~~~~~~~~~~~~~~v~e~~   98 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPN-IVEMYSSYLVGDELWVVMEFL   98 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCC-hheEEEEEEcCCeEEEEEecc
Confidence            4555679999999999999998899999999876432  2345788999999999998 999999999999999999999


Q ss_pred             CCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          280 KHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       280 ~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .++.+..+..  .+++..+..++.|++.||+|||++||+||||+|+||+++ .++.++|+|||++..
T Consensus        99 ~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~-~~~~~~l~d~g~~~~  164 (285)
T cd06648          99 EGGALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLT-SDGRVKLSDFGFCAQ  164 (285)
T ss_pred             CCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEc-CCCcEEEcccccchh
Confidence            9988876653  478889999999999999999999999999999999999 677899999998753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=1.7e-36  Score=317.42  Aligned_cols=140  Identities=21%  Similarity=0.243  Sum_probs=115.2

Q ss_pred             CCeeEEEEe--cccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEE--GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~L--G~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ++|++.+.+  |.|+||.||++....++..+|+|.+.......   .|+.+...+ .|++ |++++++|...+..|+|||
T Consensus        14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~---~e~~~~~~~~~h~~-iv~~~~~~~~~~~~~iv~e   89 (267)
T PHA03390         14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNA---IEPMVHQLMKDNPN-FIKLYYSVTTLKGHVLIMD   89 (267)
T ss_pred             HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcch---hhHHHHHHhhcCCC-EEEEEEEEecCCeeEEEEE
Confidence            356666665  99999999999999999999999986542221   133333222 5777 9999999999999999999


Q ss_pred             ccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++++.+..+.+   .+++..+..++.||+.||.|||+.||+||||||+||+++.++..++|+|||++..
T Consensus        90 ~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~  159 (267)
T PHA03390         90 YIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKI  159 (267)
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCcccee
Confidence            999888876653   3899999999999999999999999999999999999995554899999998863

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.8e-37  Score=333.61  Aligned_cols=144  Identities=28%  Similarity=0.359  Sum_probs=121.3

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+-..|+++++||+||-+.||++..- +.+.||+|.+...    .....+.+|+..|.+|+....|+.++++-..++++|
T Consensus       358 Vkg~~Yeilk~iG~GGSSkV~kV~~s-~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lY  436 (677)
T KOG0596|consen  358 VKGREYEILKQIGSGGSSKVFKVLNS-DKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLY  436 (677)
T ss_pred             ECcchhhHHHhhcCCCcceeeeeecC-CCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEE
Confidence            34567999999999999999999984 4567777765422    234568899999999997777999999999999999


Q ss_pred             EEEeccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||-+.++-..+.+.   +....++.|..||+.|+.++|.+||||.||||+|+|+- + +.+||+|||+|..
T Consensus       437 mvmE~Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlV-k-G~LKLIDFGIA~a  508 (677)
T KOG0596|consen  437 MVMECGDIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLV-K-GRLKLIDFGIANA  508 (677)
T ss_pred             EEeecccccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEEE-e-eeEEeeeechhcc
Confidence            99999888777666544   33348899999999999999999999999999999996 4 4699999999975

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.2e-36  Score=327.52  Aligned_cols=283  Identities=27%  Similarity=0.396  Sum_probs=210.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeC-----
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCG-----  269 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~-----  269 (728)
                      ..++|.+.+.||+|+||.||+|.+..+|+.||+|++....    ....+.+|+.++.+++|+| |+++++++...     
T Consensus        15 ~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~-iv~~~~~~~~~~~~~~   93 (345)
T cd07877          15 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHEN-VIGLLDVFTPARSLEE   93 (345)
T ss_pred             ccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCc-ccceeeeeeecccccc
Confidence            4478999999999999999999998899999999986432    2345778999999999999 99999887643     


Q ss_pred             -CeeEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccccc
Q 004835          270 -DSDCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGF  346 (728)
Q Consensus       270 -~~~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~  346 (728)
                       ...|++++++.+ .+..+..  .+++..+..++.||+.||+|||++||+||||||+||+++ .++.++|+|||++....
T Consensus        94 ~~~~~lv~~~~~~-~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~-~~~~~kl~dfg~~~~~~  171 (345)
T cd07877          94 FNDVYLVTHLMGA-DLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVN-EDCELKILDFGLARHTD  171 (345)
T ss_pred             cccEEEEehhccc-CHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEc-CCCCEEEeccccccccc
Confidence             346888888754 4444432  488999999999999999999999999999999999999 66679999999986310


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      .                                                                               
T Consensus       172 ~-------------------------------------------------------------------------------  172 (345)
T cd07877         172 D-------------------------------------------------------------------------------  172 (345)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (345)
T cd07877         173 --------------------------------------------------------------------------------  172 (345)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                              ......||..|+|||++.+...++.++|||||||++|+|+
T Consensus       173 ----------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~  212 (345)
T cd07877         173 ----------------------------------------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELL  212 (345)
T ss_pred             ----------------------------------------cccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHH
Confidence                                                    0012347888999999876556789999999999999999


Q ss_pred             cCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHH
Q 004835          587 IGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLV  665 (728)
Q Consensus       587 tG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi  665 (728)
                      +|++||.+.+. ..+..++...+.+.......+......  .........+....          .......++.+.+||
T Consensus       213 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------~~~~~~~~~~~~~li  280 (345)
T cd07877         213 TGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESAR--NYIQSLTQMPKMNF----------ANVFIGANPLAVDLL  280 (345)
T ss_pred             hCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHH--HHHHHhcccCCcch----------hhhcCCCCHHHHHHH
Confidence            99999987654 456666666665433222221110000  00000000111000          011124578899999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          666 DKCLTVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       666 ~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      .+||..||.+|||+.++|.||||.+.....
T Consensus       281 ~~~L~~dp~~R~t~~e~l~h~~f~~~~~~~  310 (345)
T cd07877         281 EKMLVLDSDKRITAAQALAHAYFAQYHDPD  310 (345)
T ss_pred             HHHcCCChhhcCCHHHHhcChhhhhcCCCC
Confidence            999999999999999999999999766544

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=2e-36  Score=313.71  Aligned_cols=134  Identities=26%  Similarity=0.372  Sum_probs=119.8

Q ss_pred             ecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCC
Q 004835          209 EGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       209 LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~  283 (728)
                      ||.|+||.||+|++..+++.||+|++....     ....+.+|+.+++.++|++ |+++++.+..+...|+|+||++++.
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~~~~~~   79 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPF-IVKLYRTFKDKKYIYMLMEYCLGGE   79 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCC-EeeeeeeEEcCCccEEEEecCCCCc
Confidence            699999999999998889999999986432     3356889999999999999 9999999999999999999999988


Q ss_pred             hHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          284 PEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       284 l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +..+..   .+++..+..++.||+.||.|||++|++|+||||+||+++ .++.++|+|||++..
T Consensus        80 L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~-~~~~~~l~df~~~~~  142 (262)
T cd05572          80 LWTILRDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLD-SNGYVKLVDFGFAKK  142 (262)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEc-CCCCEEEeeCCcccc
Confidence            876653   378899999999999999999999999999999999999 567899999999864

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=3.5e-37  Score=322.75  Aligned_cols=141  Identities=25%  Similarity=0.340  Sum_probs=125.2

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .|++.+.||.|+||.||+|.+..++..||+|++....   ....+.+|+.++.++.|++ |+++++++..+...|+||||
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPY-ITRYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCc-cHhhhcccccCCceEEEEEc
Confidence            4667778999999999999998899999999987433   2346789999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++.+..+..  .+++..+..++.||+.||.|||++||+|+||+|+||+++ +++.++|+|||++..
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~-~~~~~~l~dfg~~~~  150 (277)
T cd06642          84 LGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLS-EQGDVKLADFGVAGQ  150 (277)
T ss_pred             cCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEe-CCCCEEEcccccccc
Confidence            99988876654  378899999999999999999999999999999999998 667899999999864

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=1.6e-36  Score=318.02  Aligned_cols=142  Identities=25%  Similarity=0.339  Sum_probs=126.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ..|+..+.||.|+||.||+|.+..++..||||++....   ....+.+|+.+++.+.|++ |+++++++..+...|+|||
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPY-VTKYYGSYLKGTKLWIIME   82 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEEECCEEEEEEe
Confidence            35888899999999999999998889999999987543   2345778999999999998 9999999999999999999


Q ss_pred             ccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++++++..+..  .+++..+..++.|++.||.|||+.+++|+||+|+||+++ .++.++|+|||++..
T Consensus        83 ~~~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~-~~~~~~l~dfg~~~~  150 (277)
T cd06640          83 YLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVLLS-EQGDVKLADFGVAGQ  150 (277)
T ss_pred             cCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEc-CCCCEEEccccccee
Confidence            999988876654  378889999999999999999999999999999999999 667799999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=9.6e-37  Score=324.40  Aligned_cols=141  Identities=22%  Similarity=0.341  Sum_probs=124.9

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      .|.....||.|+||.||+|.+..+++.||+|++...  .....+.+|+.++..+.|++ |+++++++..++..|+||||+
T Consensus        22 ~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~-i~~~~~~~~~~~~~~iv~e~~  100 (297)
T cd06659          22 LLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQN-VVEMYKSYLVGEELWVLMEFL  100 (297)
T ss_pred             hHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCc-hhhhhhheeeCCeEEEEEecC
Confidence            445556899999999999999889999999998643  23456788999999999999 999999999999999999999


Q ss_pred             CCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          280 KHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       280 ~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +++++..+..  .+++..+..++.|++.||.|||++||+||||||+||+++ .++.++|+|||++..
T Consensus       101 ~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~-~~~~~kL~dfg~~~~  166 (297)
T cd06659         101 QGGALTDIVSQTRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLT-LDGRVKLSDFGFCAQ  166 (297)
T ss_pred             CCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEc-cCCcEEEeechhHhh
Confidence            9998877654  378999999999999999999999999999999999998 667899999999863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=1.1e-36  Score=320.54  Aligned_cols=142  Identities=25%  Similarity=0.326  Sum_probs=120.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcC-CCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFG-GKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ++|...+.||+|+||.||++.+..+++.||+|.+....   ....+.+|+.++.++. |++ |+++++++..+...+++|
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~-iv~~~~~~~~~~~~~~~~   82 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPY-IVKFYGALFREGDCWICM   82 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCC-EeeeeeEEecCCcEEEEE
Confidence            46777889999999999999999999999999987532   2345788999999997 887 999999999889999999


Q ss_pred             eccCCCChHHH-------hhcCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVL-------KKEIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l-------~~~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+...+....       ...+++..+..++.|++.||+|||+. +|+||||||+|||++ ..+.++|+|||++..
T Consensus        83 e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~-~~~~~kl~dfg~~~~  157 (288)
T cd06616          83 ELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLD-RNGNIKLCDFGISGQ  157 (288)
T ss_pred             ecccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEc-cCCcEEEeecchhHH
Confidence            99886543221       12488899999999999999999975 999999999999998 566799999999864

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=2.5e-36  Score=321.88  Aligned_cols=142  Identities=29%  Similarity=0.433  Sum_probs=125.0

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ..|.+.+.||+|+||.||+|....+|+.||+|++....     ....+.+|+.+++.++|+| |+++.+++...+..|+|
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~n-iv~~~~~~~~~~~~~lv   93 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPN-TIEYKGCYLREHTAWLV   93 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCC-EEEEEEEEEeCCeEEEE
Confidence            46999999999999999999998899999999886321     1245778999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.+++...+.   ..+++..+..++.||+.||.|||+.||+||||+|+||+++ +++.++|+|||++..
T Consensus        94 ~e~~~g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~-~~~~~kL~dfg~~~~  164 (307)
T cd06607          94 MEYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLT-EPGTVKLADFGSASL  164 (307)
T ss_pred             HHhhCCCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEC-CCCCEEEeecCccee
Confidence            9999977655543   2488999999999999999999999999999999999999 667899999998864

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-38  Score=321.34  Aligned_cols=257  Identities=23%  Similarity=0.312  Sum_probs=200.1

Q ss_pred             CCCeeE-EEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeC----CeeEE
Q 004835          200 FESFIV-EEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCG----DSDCF  274 (728)
Q Consensus       200 ~~~y~i-~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~----~~~~L  274 (728)
                      +++|.+ -++||-|-.|.|..+..+.+|+.+|+|++...   ....+|+++.-..+.+.+||.++++|++.    ..+.+
T Consensus        60 tedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds---~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLi  136 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDS---PKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLI  136 (400)
T ss_pred             hhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcC---HHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEe
Confidence            456766 36899999999999999999999999998654   23457888765555444499999988743    46788


Q ss_pred             EEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEeeeccccccC
Q 004835          275 VLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLIDFNLAMVGFD  347 (728)
Q Consensus       275 V~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~DFGlA~~~~~  347 (728)
                      |||.++||.|...+.     .+.+.++..|+.||..|+.|||+.+|.||||||+|+|....  +-.+||+|||+|+....
T Consensus       137 VmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~  216 (400)
T KOG0604|consen  137 VMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQE  216 (400)
T ss_pred             eeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEecccccccccCC
Confidence            999999987765543     28999999999999999999999999999999999999733  45679999999985210


Q ss_pred             CCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccc
Q 004835          348 GSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAK  427 (728)
Q Consensus       348 ~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~  427 (728)
                      .                                                                               
T Consensus       217 ~-------------------------------------------------------------------------------  217 (400)
T KOG0604|consen  217 P-------------------------------------------------------------------------------  217 (400)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCC
Q 004835          428 EATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAG  507 (728)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (728)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (400)
T KOG0604|consen  218 --------------------------------------------------------------------------------  217 (400)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhc
Q 004835          508 LMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI  587 (728)
Q Consensus       508 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLlt  587 (728)
                                                            ......+-||+|.|||++ +.+.|+..+|+||+|||+|-|++
T Consensus       218 --------------------------------------~~L~TPc~TPyYvaPevl-g~eKydkscdmwSlgVimYIlLC  258 (400)
T KOG0604|consen  218 --------------------------------------GDLMTPCFTPYYVAPEVL-GPEKYDKSCDMWSLGVIMYILLC  258 (400)
T ss_pred             --------------------------------------ccccCCcccccccCHHHh-CchhcCCCCCccchhHHHHHhhc
Confidence                                                  001133579999999999 76678999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHH
Q 004835          588 GRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK  667 (728)
Q Consensus       588 G~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~  667 (728)
                      |.+||++..-..+.--|+          .++......||             ..+|           .++|+.++|||++
T Consensus       259 GyPPFYS~hg~aispgMk----------~rI~~gqy~FP-------------~pEW-----------s~VSe~aKdlIR~  304 (400)
T KOG0604|consen  259 GYPPFYSNHGLAISPGMK----------RRIRTGQYEFP-------------EPEW-----------SCVSEAAKDLIRK  304 (400)
T ss_pred             CCCcccccCCccCChhHH----------hHhhccCccCC-------------ChhH-----------hHHHHHHHHHHHH
Confidence            999998754322211110          12222223343             2345           5789999999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCccc
Q 004835          668 CLTVNPRLRISAEDALKHEFFAPC  691 (728)
Q Consensus       668 ~L~~dP~~Rpta~e~L~Hp~f~~~  691 (728)
                      +|..+|.+|.|+++++.|||..+.
T Consensus       305 LLkt~PteRlTI~~~m~hpwi~~~  328 (400)
T KOG0604|consen  305 LLKTEPTERLTIEEVMDHPWINQY  328 (400)
T ss_pred             HhcCCchhheeHHHhhcCchhccc
Confidence            999999999999999999999854

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=1.3e-36  Score=328.67  Aligned_cols=293  Identities=25%  Similarity=0.416  Sum_probs=213.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhc-CCCCceEEecceEEeC--Cee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCG--DSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~--~~~  272 (728)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|.+...    .....+.+|+.++.++ +|+| |+++++++...  ...
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~n-i~~~~~~~~~~~~~~~   84 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPN-IVKLLNVIKAENDKDI   84 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCC-ccceeeeeccCCCceE
Confidence            46899999999999999999999888999999987532    2234567899999999 8988 99999988643  468


Q ss_pred             EEEEeccCCCChHHHhh-cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          273 CFVLEHVKHDRPEVLKK-EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      |+||||+.+++...+.. .+.+..+..++.||+.||.|||+.||+||||||+||+++ .++.++|+|||++.........
T Consensus        85 ~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~-~~~~~kl~d~g~~~~~~~~~~~  163 (337)
T cd07852          85 YLVFEYMETDLHAVIRANILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLN-SDCRVKLADFGLARSLSELEEN  163 (337)
T ss_pred             EEEecccccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEc-CCCcEEEeeccchhcccccccc
Confidence            99999999755444433 478888899999999999999999999999999999999 6678999999998742110000


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (337)
T cd07852         164 --------------------------------------------------------------------------------  163 (337)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (337)
T cd07852         164 --------------------------------------------------------------------------------  163 (337)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                    . ........+||..|+|||++.+...++.++|||||||++|+|++|+.|
T Consensus       164 ------------------------------~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~p  212 (337)
T cd07852         164 ------------------------------P-ENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPL  212 (337)
T ss_pred             ------------------------------c-cCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCC
Confidence                                          0 000011346899999999987766678999999999999999999999


Q ss_pred             CCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          592 FFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       592 F~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      |.+... ..+..++...|.+....+..+..   .+......  .+.......       .......++.++.+||.+||.
T Consensus       213 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~l~~li~~~l~  280 (337)
T cd07852         213 FPGTSTLNQLEKIIEVIGPPSAEDIESIKS---PFAATMLD--SLPSRPRKP-------LDELLPKASDDALDLLKKLLV  280 (337)
T ss_pred             CCCCChHHHHHHHHHHhCCCCHHHHHHHHh---hhHHHhhh--hcccccccc-------hhhhccCCCHHHHHHHHHhcc
Confidence            987665 45666666666432211111110   00000000  000000000       011223368899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccchhcchH
Q 004835          671 VNPRLRISAEDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~~~~~~  697 (728)
                      .||++|||+.++++||||..+......
T Consensus       281 ~~P~~Rps~~~il~~~~~~~~~~~~~~  307 (337)
T cd07852         281 FNPNKRLTAEEALEHPYVAQFHNPSDE  307 (337)
T ss_pred             CCcccccCHHHHhhChhhhhhccCCCC
Confidence            999999999999999999987544433

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.4e-36  Score=319.66  Aligned_cols=142  Identities=25%  Similarity=0.376  Sum_probs=127.0

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .++|++.+.||+|+||+||+|.+..+|+.||+|++....   ....+.+|+.++..++|++ |+++++++......|+||
T Consensus         4 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~   82 (284)
T cd06620           4 NEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPY-IVSFYGAFLNENNICMCM   82 (284)
T ss_pred             HHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCC-cceEeeeEecCCEEEEEE
Confidence            457999999999999999999999899999999876432   2456889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      ||++++++..+..   .+++..+..++.|++.||.|||+ .+|+||||||+||+++ +++.++|+|||++.
T Consensus        83 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~-~~~~~~l~d~gl~~  152 (284)
T cd06620          83 EFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVN-SRGQIKLCDFGVSG  152 (284)
T ss_pred             ecCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEEC-CCCcEEEccCCccc
Confidence            9999999877653   37889999999999999999997 6999999999999998 66789999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=2.4e-36  Score=328.09  Aligned_cols=283  Identities=28%  Similarity=0.430  Sum_probs=210.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCe----
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS----  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~----  271 (728)
                      .++|.+...||+|+||.||+|++..+++.||||++...    .....+.+|+.+++.+.|++ |+++.+++...+.    
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHEN-VIGLLDVFTPASSLEDF   92 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCC-HHHHHHHhhcccccccc
Confidence            46899999999999999999999989999999987642    12345678999999999999 8888888765554    


Q ss_pred             --eEEEEeccCCCChHHHhh-cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          272 --DCFVLEHVKHDRPEVLKK-EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       272 --~~LV~E~~~~~~l~~l~~-~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                        .|+|+||+++.+...+.. .+++..+..++.||+.||.|||+.||+||||||+||+++ .++.++|+|||++......
T Consensus        93 ~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~-~~~~~kL~dfg~~~~~~~~  171 (343)
T cd07851          93 QDVYLVTHLMGADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVN-EDCELKILDFGLARHTDDE  171 (343)
T ss_pred             ccEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEC-CCCCEEEcccccccccccc
Confidence              899999996644333332 489999999999999999999999999999999999999 6678999999998631000


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (343)
T cd07851         172 --------------------------------------------------------------------------------  171 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (343)
T cd07851         172 --------------------------------------------------------------------------------  171 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                             .....+|..|+|||++.+...++.++|||||||++|+|++|
T Consensus       172 ---------------------------------------~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg  212 (343)
T cd07851         172 ---------------------------------------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTG  212 (343)
T ss_pred             ---------------------------------------ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhC
Confidence                                                   01234688899999986655578999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHH
Q 004835          589 RTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK  667 (728)
Q Consensus       589 ~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~  667 (728)
                      +.||.+... ..+..++...+.+......++..   ......  ...++......+.       .....++..+.+||.+
T Consensus       213 ~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~-------~~~~~~s~~l~dli~~  280 (343)
T cd07851         213 KTLFPGSDHIDQLKRIMNLVGTPDEELLQKISS---ESARNY--IQSLPQMPKKDFK-------EVFSGANPLAIDLLEK  280 (343)
T ss_pred             CCCCCCCChHHHHHHHHHhcCCCCHHHHhhccc---hhHHHH--HHhccccCCCCHH-------HHhccCCHHHHHHHHH
Confidence            999987655 45666676666433211111110   000000  0000000000010       1123458899999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          668 CLTVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       668 ~L~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      ||..||.+|||+.++++||||.+.....
T Consensus       281 ~l~~~P~~Rpt~~ell~h~~~~~~~~~~  308 (343)
T cd07851         281 MLVLDPDKRITAAEALAHPYLAEYHDPE  308 (343)
T ss_pred             hCCCChhhCCCHHHHhcCCCccccCCCc
Confidence            9999999999999999999999765544

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=2.2e-36  Score=320.77  Aligned_cols=143  Identities=27%  Similarity=0.326  Sum_probs=127.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      .++|.+.+.||.|+||.||+|....++..||+|.+...  .....+.+|+.+++.+.|++ |+++++.+..++..|+|+|
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~-i~~~~~~~~~~~~~~lv~e   96 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPN-IVNYLDSYLVGDELWVVME   96 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCC-eeehhheeeeCCcEEEEEe
Confidence            36899999999999999999999888999999997643  23456788999999999998 9999999999999999999


Q ss_pred             ccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.++.+..+..  .+++..+..++.|++.||.|||++|++||||||+||+++ .++.++|+|||++..
T Consensus        97 ~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~-~~~~~kL~dfg~~~~  164 (293)
T cd06647          97 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLG-MDGSVKLTDFGFCAQ  164 (293)
T ss_pred             cCCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEc-CCCCEEEccCcceec
Confidence            999988877654  378889999999999999999999999999999999998 667899999998863

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=3.3e-36  Score=315.22  Aligned_cols=272  Identities=28%  Similarity=0.425  Sum_probs=207.7

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcC-CCCceEEecceEEeCCeeEEEEec
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFG-GKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      |.+.+.||.|+||+||+|+...+++.||||.+....   ......+|+..+.++. |++ |+++++++..++..|+||||
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~-i~~~~~~~~~~~~~~lv~e~   79 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPN-IVKLKEVFRENDELYFVFEY   79 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCC-chhHHHHhhcCCcEEEEEec
Confidence            678899999999999999998889999999876432   2223457999999999 888 99999999999999999999


Q ss_pred             cCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcccc
Q 004835          279 VKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQAT  354 (728)
Q Consensus       279 ~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~  354 (728)
                      +.+.+...+..    .+++..+..++.|++.||.|||++||+|+||+|+||+++ +++.++|+|||++......      
T Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~-~~~~~~l~d~~~~~~~~~~------  152 (283)
T cd07830          80 MEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVS-GPEVVKIADFGLAREIRSR------  152 (283)
T ss_pred             CCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEc-CCCCEEEeecccceeccCC------
Confidence            96655555543    478899999999999999999999999999999999999 6778999999998641100      


Q ss_pred             CCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCC
Q 004835          355 LPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRT  434 (728)
Q Consensus       355 ~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (728)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (283)
T cd07830         153 --------------------------------------------------------------------------------  152 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCC
Q 004835          435 PAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPS  514 (728)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (728)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (283)
T cd07830         153 --------------------------------------------------------------------------------  152 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 004835          515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG  594 (728)
Q Consensus       515 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~  594 (728)
                                                     .......|+..|+|||++.+...++.++|||||||++|+|++|.+||.+
T Consensus       153 -------------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~  201 (283)
T cd07830         153 -------------------------------PPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPG  201 (283)
T ss_pred             -------------------------------CCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCC
Confidence                                           0001335788999999986666578999999999999999999999987


Q ss_pred             CCh-HHHHHHHHHhCCchHH--HHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          595 DPE-QNIKDIAKLRGSEDLW--EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       595 ~~~-~~l~~i~~~~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      ... ..+..+...+|.+...  ...........+.     .........          ..+....+..+.+||++||..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----------~~~~~~~~~~~~~li~~cl~~  266 (283)
T cd07830         202 SSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFR-----FPQFAPTSL----------HQLIPNASPEAIDLIKDMLRW  266 (283)
T ss_pred             CChHHHHHHHHHhcCCCChhhhhhHhhhhcccccc-----ccccccccH----------HHHcccCCHHHHHHHHHhccc
Confidence            655 5677777777764332  2111111010000     000000000          111223378899999999999


Q ss_pred             CCCCCCCHHHHhcCCCC
Q 004835          672 NPRLRISAEDALKHEFF  688 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f  688 (728)
                      ||++|||++|++.||||
T Consensus       267 ~p~~Rpt~~ei~~~~~~  283 (283)
T cd07830         267 DPKKRPTASQALQHPYF  283 (283)
T ss_pred             CcccCCCHHHHhhCCCC
Confidence            99999999999999998

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=5.1e-36  Score=312.37  Aligned_cols=141  Identities=25%  Similarity=0.358  Sum_probs=124.6

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC------------chhHHHHHHHHHHhcCCCCceEEecceEEeC
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA------------SKHYVSNELRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~------------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      +|.+.+.||.|+||.||+|....+|+.||+|.+....            ..+.+.+|+.++..++|++ |+++++++...
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~   80 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLN-IVQYLGFETTE   80 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCC-cceEEEEeccC
Confidence            5889999999999999999998899999999875311            0134678999999999999 99999999999


Q ss_pred             CeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          270 DSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +..++||||+.++.+..+.+   .+++..++.++.||+.||.|||+++++||||+|+||+++ .++.++|+|||++..
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~-~~~~~~l~d~~~~~~  157 (272)
T cd06629          81 EYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVD-ADGICKISDFGISKK  157 (272)
T ss_pred             CceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEc-CCCeEEEeecccccc
Confidence            99999999999988876653   378889999999999999999999999999999999999 677899999999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=8.5e-36  Score=307.55  Aligned_cols=141  Identities=25%  Similarity=0.333  Sum_probs=126.1

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +|++.+.||.|+||.||.++...+++.+++|.+...    .....+.+|+.++++++|++ |+++++++......++|||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~-i~~~~~~~~~~~~~~~~~e   79 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPN-IIAYYNHFMDDNTLLIEME   79 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCC-eeEEEeEEecCCeEEEEEE
Confidence            589999999999999999999999999999987643    22356789999999999998 9999999999999999999


Q ss_pred             ccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++++.+..+..     .+++..+..++.|++.||.|||+.||+||||||+||+++ +++.+||+|||++..
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~-~~~~~kl~d~~~~~~  150 (256)
T cd08221          80 YANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLT-KAGLIKLGDFGISKI  150 (256)
T ss_pred             ecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEe-CCCCEEECcCcceEE
Confidence            999988776553     278889999999999999999999999999999999999 667799999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-37  Score=337.02  Aligned_cols=146  Identities=21%  Similarity=0.264  Sum_probs=128.6

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ..-..+.+++.||+|.||.||+|.+. ....||+|.+... ...+.|.+|+++|++|+|++ ||++++++..++.+||||
T Consensus       203 i~r~~l~l~~~LG~G~FG~V~~g~~~-~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~-lV~l~gV~~~~~piyIVt  280 (468)
T KOG0197|consen  203 IPREELKLIRELGSGQFGEVWLGKWN-GSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEK-LVKLYGVCTKQEPIYIVT  280 (468)
T ss_pred             ecHHHHHHHHHhcCCccceEEEEEEc-CCCcccceEEeccccChhHHHHHHHHHHhCcccC-eEEEEEEEecCCceEEEE
Confidence            33455777889999999999999995 3458999998864 45577889999999999999 999999999888999999


Q ss_pred             eccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccccc
Q 004835          277 EHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGF  346 (728)
Q Consensus       277 E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~  346 (728)
                      ||+..|+|..+++.     +...+.+.++.|||+|++||+++++|||||-..||||+ ++..+||+|||+|+...
T Consensus       281 E~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~-~~~~vKIsDFGLAr~~~  354 (468)
T KOG0197|consen  281 EYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVD-EDLVVKISDFGLARLIG  354 (468)
T ss_pred             EecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhheeec-cCceEEEcccccccccC
Confidence            99999987766542     88899999999999999999999999999999999999 77789999999999543

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=5.7e-36  Score=308.28  Aligned_cols=141  Identities=27%  Similarity=0.355  Sum_probs=122.9

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEe--CCeeEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKC--GDSDCFV  275 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--~~~~~LV  275 (728)
                      +|++.+.||.|+||.||+|.+..+++.||+|++....    ....+.+|+.+++.++|++ |+++++++..  +...|++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~~~~   79 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPN-IVRYYDRIIDRSNQTLYIV   79 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCc-cceeeeeeecCCCCEEEEE
Confidence            5899999999999999999999999999999886432    2345778999999999999 9999887753  4568999


Q ss_pred             EeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHH-----hCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          276 LEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLH-----KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       276 ~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLH-----s~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      |||++++++..+..       .+++..++.++.||+.||.|||     +.+|+|+||||+||+++ .++.++|+|||++.
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~-~~~~~kl~d~g~~~  158 (265)
T cd08217          80 MEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLD-ANNNVKLGDFGLAK  158 (265)
T ss_pred             ehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEe-cCCCEEEecccccc
Confidence            99999988876542       3788899999999999999999     89999999999999999 66789999999987


Q ss_pred             c
Q 004835          344 V  344 (728)
Q Consensus       344 ~  344 (728)
                      .
T Consensus       159 ~  159 (265)
T cd08217         159 I  159 (265)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=6.2e-36  Score=310.94  Aligned_cols=143  Identities=19%  Similarity=0.260  Sum_probs=127.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ..+|.+.+.||+|+||.||+|.+..+++.||+|++.... ....+.+|+.++..+.|++ |+++++++......++||||
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~   83 (263)
T cd05052           5 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN-LVQLLGVCTREPPFYIITEF   83 (263)
T ss_pred             hHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCC-hhheEEEEcCCCCcEEEEEe
Confidence            357999999999999999999999899999999987543 2456789999999999998 99999999999999999999


Q ss_pred             cCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++.+..+..     .+++..++.++.|++.||+|||++||+||||||+|||++ +++.++|+|||++..
T Consensus        84 ~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~-~~~~~kl~df~~~~~  153 (263)
T cd05052          84 MTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVG-ENHLVKVADFGLSRL  153 (263)
T ss_pred             CCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEc-CCCcEEeCCCccccc
Confidence            99888776543     278888999999999999999999999999999999998 677899999999864

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=5.6e-36  Score=309.07  Aligned_cols=142  Identities=27%  Similarity=0.398  Sum_probs=129.0

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ++|++.+.||.|+||.||+|.+..+++.||+|++....   ....+.+|+.++.+++|++ |+++++++..+...++|||
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPY-VVKCYGAFYKEGEISIVLE   79 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCC-eeeEEEEEccCCeEEEEEE
Confidence            36899999999999999999999899999999987653   3567889999999999998 9999999999999999999


Q ss_pred             ccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++++++..+..   .+++..+..++.|++.||.|||+ .|++||||+|+||+++ .++.++|+|||++..
T Consensus        80 ~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~-~~~~~~l~df~~~~~  149 (264)
T cd06623          80 YMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLIN-SKGEVKIADFGISKV  149 (264)
T ss_pred             ecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEEC-CCCCEEEccCcccee
Confidence            999888877664   38899999999999999999999 9999999999999999 667899999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=4.9e-36  Score=314.41  Aligned_cols=141  Identities=24%  Similarity=0.331  Sum_probs=125.8

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      -|++.+.||.|+||.||+|.+..++..||||++....   ....+.+|+.++.++.|++ |+++++++..+...|+||||
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~e~   83 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPY-VTKYYGSYLKDTKLWIIMEY   83 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCC-EeEEEEEEEeCCeEEEEEEe
Confidence            4778899999999999999998899999999876432   2345778999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++++..+..  .+++..+..++.|++.||.|||+.||+|+||||+||+++ .++.++|+|||++..
T Consensus        84 ~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~-~~~~~~l~dfg~~~~  150 (277)
T cd06641          84 LGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLS-EHGEVKLADFGVAGQ  150 (277)
T ss_pred             CCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEEC-CCCCEEEeeccccee
Confidence            99988877654  378999999999999999999999999999999999998 667799999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=4.5e-36  Score=313.19  Aligned_cols=274  Identities=29%  Similarity=0.409  Sum_probs=209.1

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      |++.+.||+|+||.||+|+...+++.||+|++....    ....+.+|+.+++.+.|++ |+++++++......++||||
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~~~~~~~v~e~   79 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPN-IVKLLDVIHTERKLYLVFEY   79 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCC-HHHHHhhhhcCCceEEEecC
Confidence            677889999999999999999999999999987532    2355778999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccC
Q 004835          279 VKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATL  355 (728)
Q Consensus       279 ~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~  355 (728)
                      +++++...+.+   .+++..+..++.|++.||.|||++||+||||+|+||+++ +++.++|+|||++.......      
T Consensus        80 ~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~-~~~~~~l~d~g~~~~~~~~~------  152 (282)
T cd07829          80 CDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILIN-RDGVLKLADFGLARAFGIPL------  152 (282)
T ss_pred             cCcCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEc-CCCCEEEecCCcccccCCCc------
Confidence            99754444433   488999999999999999999999999999999999999 66789999999986411000      


Q ss_pred             CCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCc
Q 004835          356 PGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTP  435 (728)
Q Consensus       356 ~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (728)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (282)
T cd07829         153 --------------------------------------------------------------------------------  152 (282)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCC
Q 004835          436 AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSD  515 (728)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  515 (728)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (282)
T cd07829         153 --------------------------------------------------------------------------------  152 (282)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 004835          516 LSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD  595 (728)
Q Consensus       516 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~  595 (728)
                                                    .......++..|+|||++.+...++.++|||||||++|||++|.+||.+.
T Consensus       153 ------------------------------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~  202 (282)
T cd07829         153 ------------------------------RTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGD  202 (282)
T ss_pred             ------------------------------cccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCc
Confidence                                          00012235678999999876646799999999999999999999999886


Q ss_pred             Ch-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCC
Q 004835          596 PE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR  674 (728)
Q Consensus       596 ~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~  674 (728)
                      +. ..+..+...++.+.......+.... .+.      ...+......+       ......++..+.++|.+||..||+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~l~~~P~  268 (282)
T cd07829         203 SEIDQLFKIFQILGTPTEESWPGVTKLP-DYK------PTFPKFPPKDL-------EKVLPRLDPEGIDLLSKMLQYNPA  268 (282)
T ss_pred             cHHHHHHHHHHHhCCCcHHHHHhhcccc-ccc------ccccccCccch-------HHhcccccHHHHHHHHHhhccCcc
Confidence            65 5667777777764333222221111 000      00000000000       011223478899999999999999


Q ss_pred             CCCCHHHHhcCCCC
Q 004835          675 LRISAEDALKHEFF  688 (728)
Q Consensus       675 ~Rpta~e~L~Hp~f  688 (728)
                      +||++.+++.||||
T Consensus       269 ~Rp~~~~~l~~p~~  282 (282)
T cd07829         269 KRISAKEALKHPYF  282 (282)
T ss_pred             cCCCHHHHhhCcCC
Confidence            99999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=2.8e-36  Score=332.38  Aligned_cols=143  Identities=23%  Similarity=0.296  Sum_probs=123.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCC-----CeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecceEEeCC
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKND-----GTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~-----g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~  270 (728)
                      .++|++.+.||+|+||.||+|++...     +..||||++.....   ...+.+|+.+++.+ .|+| |+++++++...+
T Consensus        37 ~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~n-Iv~~~~~~~~~~  115 (374)
T cd05106          37 RDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKN-IVNLLGACTHGG  115 (374)
T ss_pred             HHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCc-eeeEeeEecCCC
Confidence            45799999999999999999986543     35899999875432   34577899999999 7888 999999999999


Q ss_pred             eeEEEEeccCCCChHHHhh-------------------------------------------------------------
Q 004835          271 SDCFVLEHVKHDRPEVLKK-------------------------------------------------------------  289 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~-------------------------------------------------------------  289 (728)
                      ..|+||||+.++.+..+..                                                             
T Consensus       116 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (374)
T cd05106         116 PVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSS  195 (374)
T ss_pred             CeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccc
Confidence            9999999999988765432                                                             


Q ss_pred             ------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          290 ------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       290 ------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                                  .+++..+..|+.||+.||.|||++||+||||||+|||++ ++..++|+|||++..
T Consensus       196 ~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~-~~~~~kL~DfGla~~  261 (374)
T cd05106         196 DSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLT-DGRVAKICDFGLARD  261 (374)
T ss_pred             cccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEe-CCCeEEEeeceeeee
Confidence                        256778899999999999999999999999999999999 677899999999864

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=6.6e-36  Score=312.75  Aligned_cols=140  Identities=31%  Similarity=0.428  Sum_probs=118.8

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhc---CCCCceEEecceEEeCCe----
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERF---GGKNFIIKYEGCFKCGDS----  271 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L---~h~n~Ivkl~~~~~~~~~----  271 (728)
                      |++.+.||.|+||.||+|++..+++.||+|.+.....    ...+.+|+.++.++   .|++ |+++++++...+.    
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~-i~~~~~~~~~~~~~~~~   79 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPN-IVRLLDVCHGPRTDREL   79 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCC-cceEEEEEeeccCCCCc
Confidence            7889999999999999999988899999999874322    23456788777666   5888 9999999988776    


Q ss_pred             -eEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 -DCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 -~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                       .+++|||+.+.+...+..    .+++..++.++.||+.||.|||+.+|+|+||+|+||+++ .++.++|+|||++..
T Consensus        80 ~~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~-~~~~~~l~dfg~~~~  156 (287)
T cd07838          80 KLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVT-SDGQVKIADFGLARI  156 (287)
T ss_pred             eeEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEc-cCCCEEEeccCccee
Confidence             999999998755444432    378999999999999999999999999999999999999 557899999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=1.3e-36  Score=314.88  Aligned_cols=142  Identities=23%  Similarity=0.348  Sum_probs=126.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ++|++.+.||.|+||.||+|.+..+++.||+|.+....   ....+.+|+.+++++.|++ |+++++.+......++|+|
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~~~~~~lv~e   79 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPY-IVGFYGAFYNNGDISICME   79 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCc-hhhhheeeecCCEEEEEEE
Confidence            36888899999999999999999899999999887543   2356788999999999998 9999999999999999999


Q ss_pred             ccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.++++..+..    .+++..+..++.|++.||+|||+ .|++||||||+||+++ +++.++|+|||++..
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~-~~~~~~l~d~g~~~~  150 (265)
T cd06605          80 YMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVN-SRGQIKLCDFGVSGQ  150 (265)
T ss_pred             ecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEEC-CCCCEEEeecccchh
Confidence            999888877653    37888999999999999999999 9999999999999999 567799999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=6.4e-36  Score=314.13  Aligned_cols=143  Identities=17%  Similarity=0.255  Sum_probs=124.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEc----CCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRK----NDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~----~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      +++|++.+.||+|+||.||+|.+.    .++..||+|.+.....   ...+.+|+.+++.+.|+| |+++++++..+...
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~   82 (283)
T cd05090           4 LSAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPN-IVCLLGVVTQEQPV   82 (283)
T ss_pred             hhhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCC-eeeEEEEEecCCce
Confidence            468999999999999999999863    3567999999874332   245788999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh--------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC
Q 004835          273 CFVLEHVKHDRPEVLKK--------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV  332 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~--------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~  332 (728)
                      |+||||+.++.+..+..                    .+++..+..++.||+.||.|||++||+||||||+|||++ +++
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~-~~~  161 (283)
T cd05090          83 CMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIG-EQL  161 (283)
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEc-CCC
Confidence            99999999988766542                    267788899999999999999999999999999999999 667


Q ss_pred             ceEEEeeecccc
Q 004835          333 KGYLIDFNLAMV  344 (728)
Q Consensus       333 ~~kL~DFGlA~~  344 (728)
                      .++|+|||++..
T Consensus       162 ~~kl~dfg~~~~  173 (283)
T cd05090         162 HVKISDLGLSRE  173 (283)
T ss_pred             cEEecccccccc
Confidence            799999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=2.8e-36  Score=310.56  Aligned_cols=134  Identities=28%  Similarity=0.379  Sum_probs=120.0

Q ss_pred             ecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCC
Q 004835          209 EGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       209 LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~  283 (728)
                      ||.|+||.||+|++..+|+.||+|++....     ....+.+|+.++.++.|+| |+++++++..+...|+||||+.++.
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~-i~~~~~~~~~~~~~~lv~e~~~~~~   79 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPY-VVKLYYSFQGKKNLYLVMEYLPGGD   79 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcc-hhHHHHheecCcEEEEEEecCCCCc
Confidence            689999999999999889999999986532     2446788999999999999 9999999999999999999999988


Q ss_pred             hHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          284 PEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       284 l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +..+..   .+++..+..++.||+.||+|||++||+||||+|+||+++ +++.++|+|||++..
T Consensus        80 L~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~-~~~~~~l~dfg~~~~  142 (265)
T cd05579          80 LASLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNILID-SNGHLKLTDFGLSKV  142 (265)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEc-CCCCEEEEecccchh
Confidence            876654   378999999999999999999999999999999999999 667899999999864

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=7.9e-36  Score=308.55  Aligned_cols=142  Identities=18%  Similarity=0.221  Sum_probs=125.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .++|++.+.||+|+||.||+|.+. ++..+|+|.+.... ....+.+|+.++++++|++ |+++++++......|+||||
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~-~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~iv~e~   80 (256)
T cd05114           3 PSELTFMKELGSGQFGVVHLGKWR-AQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPK-LVQLYGVCTQQKPLYIVTEF   80 (256)
T ss_pred             HHHcEEeeEecCCcCceEEEEEec-cCceEEEEecccCCccHHHHHHHHHHHHHCCCCC-ceeEEEEEccCCCEEEEEEc
Confidence            457999999999999999999885 45689999876543 3457888999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++.+..+..    .+++..+..++.|++.||.|||++||+||||||+||+++ +++.++|+|||++..
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~-~~~~~kl~d~g~~~~  149 (256)
T cd05114          81 MENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVS-STGVVKVSDFGMTRY  149 (256)
T ss_pred             CCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEc-CCCeEEECCCCCccc
Confidence            99888776553    278899999999999999999999999999999999998 677899999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.1e-35  Score=313.70  Aligned_cols=142  Identities=26%  Similarity=0.375  Sum_probs=123.9

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEe--CCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKC--GDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--~~~~~LV  275 (728)
                      ++|+..+.||.|++|.||+|.+..+++.||+|.+....   ....+.+|++++++++|+| |++++++|..  ...+|+|
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~~~lv   79 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPY-IVKYYGAFLDESSSSIGIA   79 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCC-eeeeeeEEEccCCCeEEEE
Confidence            47999999999999999999999899999999987543   2356789999999999999 9999998864  3478999


Q ss_pred             EeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||++++.+..+..       .+++..+..++.||+.||.|||+.|++|+||+|+||+++ ..+.++|+|||++..
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~-~~~~~~l~dfg~~~~  154 (287)
T cd06621          80 MEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLT-RKGQVKLCDFGVSGE  154 (287)
T ss_pred             EEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEe-cCCeEEEeecccccc
Confidence            99999988866532       278888999999999999999999999999999999999 566799999999853

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=7.2e-36  Score=322.78  Aligned_cols=282  Identities=28%  Similarity=0.420  Sum_probs=210.6

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEe-CCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKC-GDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~-~~~~~  273 (728)
                      ..++|++.+.||.|+||.||+|.+..+++.||||++...    .....+.+|+.++..+.|+| |+++.++|.. ....|
T Consensus         8 ~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~~   86 (328)
T cd07856           8 ITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHEN-IISLSDIFISPLEDIY   86 (328)
T ss_pred             cccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCC-eeeEeeeEecCCCcEE
Confidence            346899999999999999999999999999999987532    23456778999999999999 9999998865 56789


Q ss_pred             EEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          274 FVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      +|+||+++. +..+.+  .+++..+..++.||+.||.|||++||+||||||.|||++ +++.++|+|||++.....    
T Consensus        87 lv~e~~~~~-L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~-~~~~~~l~dfg~~~~~~~----  160 (328)
T cd07856          87 FVTELLGTD-LHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILIN-ENCDLKICDFGLARIQDP----  160 (328)
T ss_pred             EEeehhccC-HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeEC-CCCCEEeCccccccccCC----
Confidence            999999764 444433  478888899999999999999999999999999999999 667899999998753100    


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (328)
T cd07856         161 --------------------------------------------------------------------------------  160 (328)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (328)
T cd07856         161 --------------------------------------------------------------------------------  160 (328)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                         .....+|+..|+|||++.+...++.++|||||||++|+|++|..|
T Consensus       161 -----------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~  205 (328)
T cd07856         161 -----------------------------------QMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPL  205 (328)
T ss_pred             -----------------------------------CcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCC
Confidence                                               001234678899999986645579999999999999999999999


Q ss_pred             CCCCCh-HHHHHHHHHhCCchHHHHHHhccC-CCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          592 FFGDPE-QNIKDIAKLRGSEDLWEVAKLHNR-ESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       592 F~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      |.+... .....+.+.+|.+........... ...+...      .+......+       ......++..+.++|.+||
T Consensus       206 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-------~~~~~~~~~~~~~li~~~l  272 (328)
T cd07856         206 FPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQS------LPKREPVPF-------SEKFKNADPSAIDLLEKML  272 (328)
T ss_pred             CCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhh------ccccCCCcH-------HHHcCCCCHHHHHHHHHHc
Confidence            987665 345555666665322111111110 0000000      000000000       0112356789999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      ..+|++|||+++++.||||...+...
T Consensus       273 ~~~P~~R~t~~ell~~~~~~~~~~~~  298 (328)
T cd07856         273 VFDPQKRISAAEALAHPYLAPYHDPT  298 (328)
T ss_pred             CCChhhCCCHHHHhcCCccccccCCc
Confidence            99999999999999999998766543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=7.4e-36  Score=308.23  Aligned_cols=141  Identities=18%  Similarity=0.234  Sum_probs=125.4

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      +|++.+.||.|+||.||++.+..+++.||+|.+...   ...+.+.+|+.+++.+.|+| |+++++++..++..|+||||
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~   79 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPN-IVAFKESFEADGHLYIVMEY   79 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCC-cceEEEEEEECCEEEEEEee
Confidence            589999999999999999999999999999987543   23456778999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++.+..+..     .+++..+..++.||+.||.|||++||+|+||||+||+++ +++.++|+|||++..
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~-~~~~~~l~dfg~~~~  149 (255)
T cd08219          80 CDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLT-QNGKVKLGDFGSARL  149 (255)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEC-CCCcEEEcccCccee
Confidence            99887765432     278889999999999999999999999999999999998 667899999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.1e-36  Score=309.73  Aligned_cols=136  Identities=25%  Similarity=0.333  Sum_probs=115.0

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----hhHHHHHHHHH-HhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHYVSNELRML-ERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----~~~~~~Ei~iL-~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +.||.|+||.||+|.+..+|+.||+|++.....     ...+..|..++ ....|++ |+++++++..++..|+|+||+.
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-i~~~~~~~~~~~~~~lv~e~~~   80 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPY-VAKLYYSFQSKDYLYLVMEYLN   80 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCC-eeeeeeeEEcCCeEEEEEeccC
Confidence            468999999999999998999999999864321     12234454443 4457777 9999999999999999999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++.+..+.+   .+++..+..++.||+.||.|||+.+|+||||+|+||+++ ..+.++|+|||++..
T Consensus        81 ~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~-~~~~~~l~dfg~~~~  146 (260)
T cd05611          81 GGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLID-QTGHLKLTDFGLSRN  146 (260)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEC-CCCcEEEeeccccee
Confidence            999887764   378899999999999999999999999999999999999 567799999998863

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=8.3e-36  Score=312.30  Aligned_cols=143  Identities=22%  Similarity=0.312  Sum_probs=123.1

Q ss_pred             CCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      .++|++.+.||+|+||.||+|.+.     .++..||||++.....   ...+.+|+.+++.++|+| |+++++++..+..
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~-iv~~~~~~~~~~~   83 (277)
T cd05062           5 REKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHH-VVRLLGVVSQGQP   83 (277)
T ss_pred             HHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC-eeeEEEEEcCCCC
Confidence            467999999999999999999864     2357899998864322   345778999999999999 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhhc-------------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEe
Q 004835          272 DCFVLEHVKHDRPEVLKKE-------------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLID  338 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~~-------------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~D  338 (728)
                      .++||||+.++++..+...             +++..+..++.|++.||.|||+.|++||||||+|||++ +++.++|+|
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~-~~~~~~l~d  162 (277)
T cd05062          84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVA-EDFTVKIGD  162 (277)
T ss_pred             eEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEc-CCCCEEECC
Confidence            9999999999988776532             35677888999999999999999999999999999999 667899999


Q ss_pred             eecccc
Q 004835          339 FNLAMV  344 (728)
Q Consensus       339 FGlA~~  344 (728)
                      ||++..
T Consensus       163 fg~~~~  168 (277)
T cd05062         163 FGMTRD  168 (277)
T ss_pred             CCCccc
Confidence            999864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=5.8e-36  Score=329.80  Aligned_cols=143  Identities=21%  Similarity=0.321  Sum_probs=122.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEE-----cCCCeEEEEEeccCcC---chhHHHHHHHHHHhc-CCCCceEEecceEEeCC
Q 004835          200 FESFIVEEEEGSGGYGTVYRARR-----KNDGTVVAIKCPHANA---SKHYVSNELRMLERF-GGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~-----~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~  270 (728)
                      .++|++.+.||+|+||.||+|.+     ..++..||||++....   ..+.+.+|+.++..+ .|+| |+++++++..++
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~Hpn-Iv~l~~~~~~~~  112 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHIN-IVNLLGACTVGG  112 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcc-eeeeeeeeccCC
Confidence            35799999999999999999974     3456789999987432   234678899999999 7888 999999999999


Q ss_pred             eeEEEEeccCCCChHHHhh-------------------------------------------------------------
Q 004835          271 SDCFVLEHVKHDRPEVLKK-------------------------------------------------------------  289 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~-------------------------------------------------------------  289 (728)
                      ..++||||++++.+..+..                                                             
T Consensus       113 ~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (375)
T cd05104         113 PTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSG  192 (375)
T ss_pred             cceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccc
Confidence            9999999999887755432                                                             


Q ss_pred             -----------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          290 -----------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       290 -----------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                                       .+++..+..++.||+.||.|||++||+||||||+|||++ ++..++|+|||++..
T Consensus       193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~-~~~~~kl~DfG~a~~  263 (375)
T cd05104         193 SYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLT-HGRITKICDFGLARD  263 (375)
T ss_pred             eecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEE-CCCcEEEecCcccee
Confidence                             256778889999999999999999999999999999999 677899999999864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=2.3e-36  Score=325.76  Aligned_cols=135  Identities=22%  Similarity=0.278  Sum_probs=117.4

Q ss_pred             EEeccc--CceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSG--GYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G--~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      ..||+|  +||+||+|++..+|+.||+|++....    ..+.+.+|+.+++.++|+| |++++++|..++..|+||||+.
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~n-iv~~~~~~~~~~~~~~v~e~~~   82 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPN-IMTSWTVFTTGSWLWVISPFMA   82 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC-cceEeeeEecCCceEEEEeccc
Confidence            356666  99999999999999999999986432    2355788999999999999 9999999999999999999999


Q ss_pred             CCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          281 HDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       281 ~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      ++.+..+..     .+++..+..++.||+.||+|||++||+||||||+|||++ ..+.++++|||.+.
T Consensus        83 ~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~-~~~~~~~~~~~~~~  149 (328)
T cd08226          83 YGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHILIS-GDGLVSLSGLSHLY  149 (328)
T ss_pred             CCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEe-CCCcEEEechHHHh
Confidence            988776654     278888999999999999999999999999999999999 56679999998754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=9e-36  Score=312.40  Aligned_cols=144  Identities=20%  Similarity=0.302  Sum_probs=125.0

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcC-----CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~-----~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      .++|.+.+.||+|+||.||+|.+..     ++..||+|.+.....   ...+.+|+.+++.++|++ |+++++++.....
T Consensus         5 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~   83 (277)
T cd05036           5 RDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQN-IVRLIGVSFERLP   83 (277)
T ss_pred             HHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEccCCC
Confidence            3579999999999999999999976     678999998764332   345788999999999998 9999999998889


Q ss_pred             eEEEEeccCCCChHHHhh----------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC--CceEEEee
Q 004835          272 DCFVLEHVKHDRPEVLKK----------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA--VKGYLIDF  339 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~----------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~--~~~kL~DF  339 (728)
                      .++||||+.++.+..+..          .+++..+..++.||+.||+|||+++++||||||+|||++..+  ..++|+||
T Consensus        84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~df  163 (277)
T cd05036          84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADF  163 (277)
T ss_pred             cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccC
Confidence            999999999988876642          278889999999999999999999999999999999998432  36899999


Q ss_pred             ecccc
Q 004835          340 NLAMV  344 (728)
Q Consensus       340 GlA~~  344 (728)
                      |+++.
T Consensus       164 g~~~~  168 (277)
T cd05036         164 GMARD  168 (277)
T ss_pred             ccccc
Confidence            99874

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=1e-35  Score=313.70  Aligned_cols=142  Identities=24%  Similarity=0.360  Sum_probs=122.6

Q ss_pred             CeeEEEEecccCceEEEEEEEc---CCCeEEEEEeccCc------CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          202 SFIVEEEEGSGGYGTVYRARRK---NDGTVVAIKCPHAN------ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~---~~g~~VAIK~i~~~------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      +|++.+.||.|+||.||+|+..   .+|..||+|++...      ...+.+.+|+.++.++.|+++|+.+++++..+...
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            4889999999999999999874   47899999998642      22356778999999996444499999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||++++.+..+..   .+++..+..++.||+.||.|||+.||+||||||+|||++ .++.++|+|||++..
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~-~~~~~kl~dfg~~~~  154 (290)
T cd05613          81 HLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLD-SNGHVVLTDFGLSKE  154 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEC-CCCCEEEeeCcccee
Confidence            99999999988766543   378889999999999999999999999999999999999 567899999999864

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=1.4e-35  Score=307.29  Aligned_cols=143  Identities=20%  Similarity=0.293  Sum_probs=125.8

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ..++|++.++||+|+||.||+|.+. ++..||+|.+.... ..+.+.+|+.+++.++|++ |+++++++......++|||
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~-~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e   81 (261)
T cd05072           4 PRESIKLVKKLGAGQFGEVWMGYYN-NSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDK-LVRLYAVVTKEEPIYIITE   81 (261)
T ss_pred             chHHeEEeeecCCcCCceEEEEEec-CCceEEEEEccCCchhHHHHHHHHHHHHhCCCCC-eeeEEEEEcCCCCcEEEEe
Confidence            4568999999999999999999975 56789999876532 3567889999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.++.+..+..     .+++..+..++.|++.||+|||+.+++||||||+||+++ +++.++|+|||++..
T Consensus        82 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~-~~~~~~l~dfg~~~~  152 (261)
T cd05072          82 YMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVS-ESLMCKIADFGLARV  152 (261)
T ss_pred             cCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEec-CCCcEEECCCcccee
Confidence            999888766543     267888999999999999999999999999999999999 667899999999874

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-36  Score=334.76  Aligned_cols=141  Identities=24%  Similarity=0.342  Sum_probs=125.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      .-|..++.||-|+||+|.+++...|...||+|.+++..     ....+..|-.||.....+- ||+||..|++.+.+|+|
T Consensus       629 SmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~W-VVrLyySFQDkdnLYFV  707 (1034)
T KOG0608|consen  629 SMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEW-VVRLYYSFQDKDNLYFV  707 (1034)
T ss_pred             cceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcc-eEEEEEEeccCCceEEE
Confidence            46899999999999999999999999999999987542     2345778999999987655 99999999999999999


Q ss_pred             EeccCCCChHHHh-h--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          276 LEHVKHDRPEVLK-K--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       276 ~E~~~~~~l~~l~-~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      |+|++||.+-.++ +  -|.+..+++|+.++..|+++.|..|+|||||||+||||| .++++||+||||+.
T Consensus       708 MdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILID-rdGHIKLTDFGLCT  777 (1034)
T KOG0608|consen  708 MDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILID-RDGHIKLTDFGLCT  777 (1034)
T ss_pred             EeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEc-cCCceeeeeccccc
Confidence            9999999876554 3  288999999999999999999999999999999999999 66679999999985

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=7.6e-36  Score=318.23  Aligned_cols=130  Identities=22%  Similarity=0.227  Sum_probs=112.3

Q ss_pred             CceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCChHHHh
Q 004835          213 GYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLK  288 (728)
Q Consensus       213 ~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~  288 (728)
                      ++|.||.++...+++.||||++...    .....+.+|+.+++.++|+| |+++++++...+..|++|||++++++..+.
T Consensus        12 ~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~-i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l   90 (314)
T cd08216          12 DLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPN-ILPYVTSFIVDSELYVVSPLMAYGSCEDLL   90 (314)
T ss_pred             CCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcc-hhhhhheeecCCeEEEEEeccCCCCHHHHH
Confidence            4455666666668999999998643    23356889999999999998 999999999999999999999999887765


Q ss_pred             h-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          289 K-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       289 ~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .     .+++..+..++.|++.||+|||+++|+||||||+|||++ .++.++|+|||.+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~-~~~~~kl~d~~~~~~  150 (314)
T cd08216          91 KTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHILLS-GDGKVVLSGLRYSVS  150 (314)
T ss_pred             HHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEe-cCCceEEecCcccee
Confidence            3     278889999999999999999999999999999999999 667899999998864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=1.1e-35  Score=309.70  Aligned_cols=142  Identities=30%  Similarity=0.409  Sum_probs=126.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcC-CCCceEEecceEEeCCeeEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFG-GKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      ++|.+.+.||.|+||.||+|....+|+.||+|++...     .....+.+|+.++.++. |++ |+++++++..++..++
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~-i~~~~~~~~~~~~~~l   79 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPG-IIKLYYTFQDEENLYF   79 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCC-chhHHHHhcCCceEEE
Confidence            4799999999999999999999999999999998642     22345778999999999 888 9999999999999999


Q ss_pred             EEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.++++..+..   .+++..+..++.|++.||.|||+.|++|+||||+||+++ .++.++|+|||++..
T Consensus        80 v~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~-~~~~~~l~df~~~~~  151 (280)
T cd05581          80 VLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENILLD-KDMHIKITDFGTAKV  151 (280)
T ss_pred             EEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEEC-CCCCEEecCCccccc
Confidence            999998888766553   388999999999999999999999999999999999998 666799999999875

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=7e-36  Score=312.25  Aligned_cols=143  Identities=27%  Similarity=0.396  Sum_probs=125.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcC-----CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~-----~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      .++|.+.+.||+|+||.||+|....     ++..||||++.....   ...+.+|+.+++.+.|++ |+++++++..+..
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~   82 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHEN-IVKFYGVCTEGDP   82 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCC-chheeeEEecCCC
Confidence            4578999999999999999998743     358899999875433   356889999999999998 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh-----------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCce
Q 004835          272 DCFVLEHVKHDRPEVLKK-----------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKG  334 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~-----------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~  334 (728)
                      .|+||||+.++.+..+..                 .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+
T Consensus        83 ~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~-~~~~~  161 (280)
T cd05049          83 PIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVG-YDLVV  161 (280)
T ss_pred             eEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEc-CCCeE
Confidence            999999999998876642                 267788899999999999999999999999999999999 66789


Q ss_pred             EEEeeecccc
Q 004835          335 YLIDFNLAMV  344 (728)
Q Consensus       335 kL~DFGlA~~  344 (728)
                      +|+|||++..
T Consensus       162 kl~d~g~~~~  171 (280)
T cd05049         162 KIGDFGMSRD  171 (280)
T ss_pred             EECCccccee
Confidence            9999999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=1.2e-35  Score=308.43  Aligned_cols=143  Identities=26%  Similarity=0.340  Sum_probs=126.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +++|++.+.||+|+||.||+|++..+++.||||.+...     .....+.+|+.+++.++|++ |+++++++...+..++
T Consensus         1 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~   79 (267)
T cd08228           1 LANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPN-VIKYLDSFIEDNELNI   79 (267)
T ss_pred             CcceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcc-eeeeeeeEEECCeEEE
Confidence            36899999999999999999999999999999987532     12345788999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||++++.+..+..       .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~-~~~~~~l~d~g~~~~  155 (267)
T cd08228          80 VLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFIT-ATGVVKLGDLGLGRF  155 (267)
T ss_pred             EEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEc-CCCCEEECcccccee
Confidence            999999988876542       267888999999999999999999999999999999998 566799999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=3.2e-35  Score=299.23  Aligned_cols=141  Identities=35%  Similarity=0.529  Sum_probs=127.8

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      +|.+.+.||.|++|.||+|.+..+++.|++|++....  ....+.+|+.+++.+.|++ |+++++++......++++||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~l~~e~~   79 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPN-IVKYYGSYLKKDELWIVMEFC   79 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCC-EeEEEEEEecCCeEEEEEecC
Confidence            4889999999999999999998889999999987654  4567889999999999998 999999999999999999999


Q ss_pred             CCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          280 KHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       280 ~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +++++..+..    .+++..+..++.|++.||.|||++|++||||+|+||+++ +++.++|+|||.+..
T Consensus        80 ~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~-~~~~~~l~d~~~~~~  147 (253)
T cd05122          80 SGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLT-SDGEVKLIDFGLSAQ  147 (253)
T ss_pred             CCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEc-cCCeEEEeecccccc
Confidence            9888876642    478999999999999999999999999999999999999 677899999999864

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2e-35  Score=308.34  Aligned_cols=143  Identities=23%  Similarity=0.316  Sum_probs=124.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCC-----CeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKND-----GTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~-----g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      .++|.+.+.||+|+||.||+|.+...     +..||+|.+.....   ...+.+|+.++..+.|++ |+++++++..+..
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~~~~   83 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHH-VVRLLGVVSTGQP   83 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCc-eeEEEEEEcCCCC
Confidence            46899999999999999999998643     38899999875432   335778999999999998 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhhc-------------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEe
Q 004835          272 DCFVLEHVKHDRPEVLKKE-------------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLID  338 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~~-------------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~D  338 (728)
                      .|+||||+.++++..+...             +++..+..++.||+.||.|||+.+|+||||||+|||++ .++.++|+|
T Consensus        84 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~-~~~~~kl~d  162 (277)
T cd05032          84 TLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVA-EDLTVKIGD  162 (277)
T ss_pred             cEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEc-CCCCEEECC
Confidence            9999999998888766432             46778899999999999999999999999999999999 667899999


Q ss_pred             eecccc
Q 004835          339 FNLAMV  344 (728)
Q Consensus       339 FGlA~~  344 (728)
                      ||+++.
T Consensus       163 fg~~~~  168 (277)
T cd05032         163 FGMTRD  168 (277)
T ss_pred             cccchh
Confidence            999864

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=3e-35  Score=304.04  Aligned_cols=141  Identities=28%  Similarity=0.413  Sum_probs=127.1

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +|.+.+.||+|+||.||+|.+..+++.||+|.+.....    ...+.+|+.+++.++|++ |+++++.+...+..++|+|
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~-i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPN-LVKYYGVEVHREKVYIFME   79 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCC-hhheeeeEecCCEEEEEEe
Confidence            58999999999999999999988999999999875433    456789999999999998 9999999999999999999


Q ss_pred             ccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.++++..+...   +++..+..++.|++.||.|||+.||+|+||+|+||+++ +++.++|+|||++..
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~-~~~~~kl~d~g~~~~  148 (264)
T cd06626          80 YCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLD-HNGVIKLGDFGCAVK  148 (264)
T ss_pred             cCCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEC-CCCCEEEcccccccc
Confidence            9999888776532   78889999999999999999999999999999999999 577899999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=3.3e-35  Score=300.38  Aligned_cols=141  Identities=29%  Similarity=0.404  Sum_probs=127.0

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeC--CeeEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCG--DSDCFV  275 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~--~~~~LV  275 (728)
                      +|.+.+.||+|++|.||+|.+..+++.|++|++....    ....+.+|+.++++++|++ |+++++++...  ...++|
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~~lv   79 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPN-IVRYYGSERDEEKNTLNIF   79 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCC-EeeEEEEEecCCCCeEEEE
Confidence            4888999999999999999999899999999987654    2566889999999999999 99999999888  889999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||+.++++..+..   .+++..+..++.|++.||+|||+.|++|+||+|+||+++ .++.++|+|||.+..
T Consensus        80 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~-~~~~~~l~d~~~~~~  150 (260)
T cd06606          80 LEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVD-SDGVVKLADFGCAKR  150 (260)
T ss_pred             EEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEc-CCCCEEEcccccEEe
Confidence            99998888876653   478999999999999999999999999999999999999 567899999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=9e-36  Score=317.59  Aligned_cols=143  Identities=24%  Similarity=0.344  Sum_probs=123.4

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCe--EEEEEeccCcC---chhHHHHHHHHHHhc-CCCCceEEecceEEeCCee
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGT--VVAIKCPHANA---SKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~--~VAIK~i~~~~---~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .+++|++.+.||+|+||.||+|.+..++.  .+|+|.+....   ....+.+|+.++.++ +|++ |+++++++...+..
T Consensus         5 ~~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~-iv~~~~~~~~~~~~   83 (303)
T cd05088           5 EWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPN-IINLLGACEHRGYL   83 (303)
T ss_pred             chhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCC-cceEEEEECCCCCc
Confidence            46789999999999999999999987775  45777765432   234677899999999 7887 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCc
Q 004835          273 CFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK  333 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~  333 (728)
                      |+||||++++.+..+..                   .+++..++.++.||+.||+|||++||+||||||+|||++ .++.
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~-~~~~  162 (303)
T cd05088          84 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVG-ENYV  162 (303)
T ss_pred             eEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEec-CCCc
Confidence            99999999888776543                   267888999999999999999999999999999999999 6678


Q ss_pred             eEEEeeeccc
Q 004835          334 GYLIDFNLAM  343 (728)
Q Consensus       334 ~kL~DFGlA~  343 (728)
                      ++|+|||++.
T Consensus       163 ~kl~dfg~~~  172 (303)
T cd05088         163 AKIADFGLSR  172 (303)
T ss_pred             EEeCccccCc
Confidence            9999999975

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=1.2e-35  Score=318.33  Aligned_cols=141  Identities=20%  Similarity=0.263  Sum_probs=121.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeE----EEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTV----VAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~----VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+|++.+.||+|+||.||+|++..++..    ||+|++....   ....+.+|+.+++.+.|+| |+++++++... ..+
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~~~g~~~~~-~~~   84 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH-VCRLLGICLTS-TVQ   84 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEcCC-Cce
Confidence            4799999999999999999998766654    8999986432   2456788999999999999 99999988754 578


Q ss_pred             EEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +|+||+.++.+..+..    .+++..+..++.||+.||+|||++||+||||||+|||++ +++.+||+|||+++.
T Consensus        85 ~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~-~~~~~kl~DfG~a~~  158 (316)
T cd05108          85 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVK-TPQHVKITDFGLAKL  158 (316)
T ss_pred             eeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEec-CCCcEEEcccccccc
Confidence            9999999988766543    277888999999999999999999999999999999998 667799999999975

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=5.2e-36  Score=314.45  Aligned_cols=144  Identities=19%  Similarity=0.228  Sum_probs=124.1

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCC-----CeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKND-----GTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~-----g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      ++.+|.+.+.||+|+||.||+|.+..+     +..||||++.....   ...+.+|+.++..+.|++ |+++++++....
T Consensus         3 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~-iv~~~~~~~~~~   81 (283)
T cd05091           3 NLSTVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPN-IVCLLGVVTKEQ   81 (283)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCC-cCeEEEEEcCCC
Confidence            345788899999999999999987543     57899999875433   345788999999999999 999999999999


Q ss_pred             eeEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC
Q 004835          271 SDCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA  331 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~  331 (728)
                      ..++++||+.++.+..+..                   .+++..+..++.|++.||.|||++||+||||||+|||++ ++
T Consensus        82 ~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~-~~  160 (283)
T cd05091          82 PLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVF-DK  160 (283)
T ss_pred             ceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEec-CC
Confidence            9999999999887766542                   267788899999999999999999999999999999998 66


Q ss_pred             CceEEEeeecccc
Q 004835          332 VKGYLIDFNLAMV  344 (728)
Q Consensus       332 ~~~kL~DFGlA~~  344 (728)
                      ..+||+|||+++.
T Consensus       161 ~~~kl~Dfg~~~~  173 (283)
T cd05091         161 LNVKISDLGLFRE  173 (283)
T ss_pred             CceEecccccccc
Confidence            7799999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-36  Score=329.92  Aligned_cols=154  Identities=29%  Similarity=0.387  Sum_probs=135.5

Q ss_pred             CCcccccccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc--hhHHHHHHHHHHhcCCCCceEEecce
Q 004835          188 NDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEGC  265 (728)
Q Consensus       188 ~~~~~~~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~--~~~~~~Ei~iL~~L~h~n~Ivkl~~~  265 (728)
                      ...++..++..++++|.-...||+|+||.||+|... +|..||||.+.....  ..+|.+|+.++.+++|+| +++++||
T Consensus        62 ~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~-~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~N-lv~LlGy  139 (361)
T KOG1187|consen   62 LRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLS-DGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPN-LVKLLGY  139 (361)
T ss_pred             cceeeHHHHHHHHhCCchhcceecCCCeEEEEEEEC-CCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcC-cccEEEE
Confidence            344566666677789999999999999999999995 459999998876543  456999999999999999 9999999


Q ss_pred             EEeCC-eeEEEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhC---CcEeccCCCCceEeecCCCceEE
Q 004835          266 FKCGD-SDCFVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQ---GIVHRDVKPGNFLFSCKAVKGYL  336 (728)
Q Consensus       266 ~~~~~-~~~LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~---gIIHRDIKPeNILld~~~~~~kL  336 (728)
                      |.+.+ ..+||+||+.+|+|+..+.     .++|..+..|+.++|.||+|||..   .||||||||+||||| +++.+||
T Consensus       140 C~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD-~~~~aKl  218 (361)
T KOG1187|consen  140 CLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLD-EDFNAKL  218 (361)
T ss_pred             EecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeEC-CCCCEEc
Confidence            99888 5999999999999877642     478999999999999999999985   399999999999999 8889999


Q ss_pred             Eeeecccc
Q 004835          337 IDFNLAMV  344 (728)
Q Consensus       337 ~DFGlA~~  344 (728)
                      +|||+|+.
T Consensus       219 sDFGLa~~  226 (361)
T KOG1187|consen  219 SDFGLAKL  226 (361)
T ss_pred             cCccCccc
Confidence            99999965

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=2.5e-35  Score=301.88  Aligned_cols=141  Identities=29%  Similarity=0.419  Sum_probs=126.2

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +|.+.+.||.|+||.||++.+..++..||+|++...    .....+.+|+++++.++|++ ++++.+.+..+...++|+|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-~~~~~~~~~~~~~~~lv~e   79 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPN-IIKYYESFEEKGKLCIVME   79 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCC-hhheEEEEecCCEEEEEEE
Confidence            589999999999999999999888999999998754    23456788999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++++++..+..       .+++..+..++.|++.||.|||++|++|+||+|+||+++ +++.++|+|||++..
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~-~~~~~~l~d~~~~~~  152 (258)
T cd08215          80 YADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLT-SNGLVKLGDFGISKV  152 (258)
T ss_pred             ecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEc-CCCcEEECCccceee
Confidence            999988766542       378899999999999999999999999999999999999 667899999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=2.4e-35  Score=304.89  Aligned_cols=143  Identities=20%  Similarity=0.278  Sum_probs=124.7

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceE-EeCCeeEEEE
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCF-KCGDSDCFVL  276 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~-~~~~~~~LV~  276 (728)
                      .+..+|++.+.||+|+||.||+|..  .|..||+|.+........+.+|+.+++++.|++ ++++++++ ..+...|+||
T Consensus         3 ~~~~~~~~~~~lg~g~~~~v~~~~~--~~~~~~~k~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~lv~   79 (256)
T cd05082           3 LNMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSN-LVQLLGVIVEEKGGLYIVT   79 (256)
T ss_pred             ccHHhCeeeeeecccCCCeEEEEEE--cCCcEEEEEeCCCchHHHHHHHHHHHHhCCCCC-eeeEEEEEEcCCCceEEEE
Confidence            3456899999999999999999987  488899999877666677889999999999998 88888865 4556789999


Q ss_pred             eccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||++++.+..+...     +++..+..++.||+.||+|||++||+||||||+||+++ +++.+||+|||++..
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~-~~~~~kl~dfg~~~~  151 (256)
T cd05082          80 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVS-EDNVAKVSDFGLTKE  151 (256)
T ss_pred             ECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEc-CCCcEEecCCcccee
Confidence            99998887665432     67889999999999999999999999999999999999 677899999999863

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=9.4e-36  Score=316.28  Aligned_cols=137  Identities=23%  Similarity=0.374  Sum_probs=122.0

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCC
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~  283 (728)
                      ..+||+|+||.||+|....+|+.||||.+....  ....+.+|+.+++.++|++ |+++++++..++..|+||||+++++
T Consensus        25 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~e~~~~~~  103 (292)
T cd06657          25 FIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHEN-VVEMYNSYLVGDELWVVMEFLEGGA  103 (292)
T ss_pred             HHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcc-hhheeeEEEeCCEEEEEEecCCCCc
Confidence            357999999999999999999999999876432  3455788999999999998 9999999999999999999999998


Q ss_pred             hHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          284 PEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       284 l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +..+..  .+++..+..++.|++.||+|||+.||+||||||+||+++ .++.++|+|||++..
T Consensus       104 L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~-~~~~~~l~dfg~~~~  165 (292)
T cd06657         104 LTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLT-HDGRVKLSDFGFCAQ  165 (292)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEC-CCCCEEEccccccee
Confidence            877653  478899999999999999999999999999999999999 566799999998753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=2.3e-35  Score=304.07  Aligned_cols=136  Identities=22%  Similarity=0.298  Sum_probs=120.9

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~  283 (728)
                      +.||+|+||.||+|++..+++.||+|.+....   ....+.+|+.+++.+.|++ |+++++++......|+||||+.+++
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~~~~~~   79 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPN-IVRLIGVCTQKQPIYIVMELVQGGD   79 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCC-cceEEEEEcCCCCeEEEEeeccCCc
Confidence            36899999999999999899999999876432   2356889999999999999 9999999999999999999999988


Q ss_pred             hHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          284 PEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       284 l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +..+..    .+++..+..++.|++.||+|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        80 L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~-~~~~~kl~dfg~~~~  143 (252)
T cd05084          80 FLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCLVT-EKNVLKISDFGMSRE  143 (252)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEEc-CCCcEEECccccCcc
Confidence            876653    278899999999999999999999999999999999998 666799999999864

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.8e-35  Score=299.95  Aligned_cols=141  Identities=30%  Similarity=0.456  Sum_probs=127.2

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +|++.+.||+|+||.||+|.+..+++.||+|.+....    ....+.+|+.++.++.|++ ++++++++..+...++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~v~e   79 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN-IVKYIGSIETSDSLYIILE   79 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCC-ccEEEEEEEeCCEEEEEEe
Confidence            5889999999999999999999899999999987543    3456889999999999998 9999999999999999999


Q ss_pred             ccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.++++..+..   .+++..+..++.|++.||.|||+.||+||||||+||+++ .++.++|+|||++..
T Consensus        80 ~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~-~~~~~~l~d~~~~~~  148 (254)
T cd06627          80 YAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTT-KDGVVKLADFGVATK  148 (254)
T ss_pred             cCCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEC-CCCCEEEecccccee
Confidence            999988877653   388999999999999999999999999999999999999 567899999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-36  Score=311.89  Aligned_cols=272  Identities=24%  Similarity=0.327  Sum_probs=207.9

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCCh
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRP  284 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l  284 (728)
                      +.||+|+|+.|--+....+|..||||++.+.  ..+.++.+|++++..++.+.+|+.++.+|+++..+|||||-+.||.+
T Consensus        84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGpl  163 (463)
T KOG0607|consen   84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGPL  163 (463)
T ss_pred             HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCchH
Confidence            3789999999999999999999999999764  45678899999999998655599999999999999999999999876


Q ss_pred             HHHh-h--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC--CceEEEeeeccccccCCCCccccCCCCc
Q 004835          285 EVLK-K--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA--VKGYLIDFNLAMVGFDGSFNQATLPGTK  359 (728)
Q Consensus       285 ~~l~-~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~--~~~kL~DFGlA~~~~~~~~~~~~~~~t~  359 (728)
                      -..+ +  .|++.++..+...|+.||.|||.+||.||||||+|||-...+  .-+|||||.+..-.....          
T Consensus       164 LshI~~~~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~----------  233 (463)
T KOG0607|consen  164 LSHIQKRKHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNN----------  233 (463)
T ss_pred             HHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccccccccCC----------
Confidence            4433 2  399999999999999999999999999999999999997333  236999998864210000          


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccccc
Q 004835          360 YVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAERL  439 (728)
Q Consensus       360 yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (728)
                                                                                 |                    
T Consensus       234 -----------------------------------------------------------~--------------------  234 (463)
T KOG0607|consen  234 -----------------------------------------------------------D--------------------  234 (463)
T ss_pred             -----------------------------------------------------------C--------------------
Confidence                                                                       0                    


Q ss_pred             CCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCchhH
Q 004835          440 REPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDL  519 (728)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  519 (728)
                                                                         +|                           
T Consensus       235 ---------------------------------------------------~s---------------------------  236 (463)
T KOG0607|consen  235 ---------------------------------------------------CS---------------------------  236 (463)
T ss_pred             ---------------------------------------------------CC---------------------------
Confidence                                                               00                           


Q ss_pred             HHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhh----ccCCCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 004835          520 QILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLF----RSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD  595 (728)
Q Consensus       520 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~----~~~~~~~~~DIWSlG~il~eLltG~~PF~~~  595 (728)
                                            ..........+|+..||||||..    ....|+.++|.||||||+|-|+.|.+||.|.
T Consensus       237 ----------------------pastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~  294 (463)
T KOG0607|consen  237 ----------------------PASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGH  294 (463)
T ss_pred             ----------------------CCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCc
Confidence                                  00011123557999999999862    4556899999999999999999999999763


Q ss_pred             ChHHHHHHHHHhCC----chHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          596 PEQNIKDIAKLRGS----EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       596 ~~~~l~~i~~~~G~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      ...+.-+   -.|.    .+..-...+.....+||+.             .|           ..++.+++|||..+|..
T Consensus       295 Cg~dCGW---drGe~Cr~CQ~~LFesIQEGkYeFPdk-------------dW-----------ahIS~eakdlisnLlvr  347 (463)
T KOG0607|consen  295 CGADCGW---DRGEVCRVCQNKLFESIQEGKYEFPDK-------------DW-----------AHISSEAKDLISNLLVR  347 (463)
T ss_pred             cCCcCCc---cCCCccHHHHHHHHHHHhccCCcCChh-------------hh-----------HHhhHHHHHHHHHHHhc
Confidence            3211000   0010    0111122344555566653             34           45789999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccchhc
Q 004835          672 NPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      |+..|.+|.++++||||..+...
T Consensus       348 da~~rlsa~~vlnhPw~~~~~~e  370 (463)
T KOG0607|consen  348 DAKQRLSAAQVLNHPWVQRCAPE  370 (463)
T ss_pred             cHHhhhhhhhccCCccccccchh
Confidence            99999999999999999987754

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=3.1e-35  Score=310.15  Aligned_cols=146  Identities=22%  Similarity=0.283  Sum_probs=125.9

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCC-----CeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecceEE
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKND-----GTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGCFK  267 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~-----g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~  267 (728)
                      ....++|++.+.||+|+||.||+|.+...     ...||+|.+.....   ...+.+|+.++.++ +|++ |+++++++.
T Consensus         8 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~-i~~~~~~~~   86 (293)
T cd05053           8 ELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN-IINLLGVCT   86 (293)
T ss_pred             ccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCC-eeeEEEEEc
Confidence            34456899999999999999999998643     37899999875432   23577899999999 7888 999999999


Q ss_pred             eCCeeEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS  328 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld  328 (728)
                      .+...++||||+.++.+..+..                   .+++..+..++.||+.||.|||++||+||||||+|||++
T Consensus        87 ~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~  166 (293)
T cd05053          87 QEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVT  166 (293)
T ss_pred             CCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEEc
Confidence            9999999999999988776542                   367888999999999999999999999999999999998


Q ss_pred             cCCCceEEEeeecccc
Q 004835          329 CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       329 ~~~~~~kL~DFGlA~~  344 (728)
                       +++.++|+|||++..
T Consensus       167 -~~~~~kL~Dfg~~~~  181 (293)
T cd05053         167 -EDHVMKIADFGLARD  181 (293)
T ss_pred             -CCCeEEeCccccccc
Confidence             677899999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=4e-35  Score=314.29  Aligned_cols=139  Identities=27%  Similarity=0.441  Sum_probs=121.8

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      |...+.||+|+||+||+|++..+|..||+|++....     ....+.+|+.+++.++|++ ++++++++......|+|||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~e  101 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPN-TIEYKGCYLKEHTAWLVME  101 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCC-CccEEEEEEeCCEEEEEEe
Confidence            666778999999999999999899999999986422     1245778999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          278 HVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       278 ~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      |+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+||+++ +++.++|+|||++.
T Consensus       102 ~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~-~~~~~kL~dfg~~~  169 (313)
T cd06633         102 YCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLT-EPGQVKLADFGSAS  169 (313)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEEC-CCCCEEEeecCCCc
Confidence            998876655543   378899999999999999999999999999999999998 66779999999874

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.5e-35  Score=305.08  Aligned_cols=140  Identities=19%  Similarity=0.286  Sum_probs=119.4

Q ss_pred             eeEEEEecccCceEEEEEEEcCC---CeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeCCe----
Q 004835          203 FIVEEEEGSGGYGTVYRARRKND---GTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS----  271 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~---g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~----  271 (728)
                      |.+.+.||+|+||.||+|....+   +..||||.+.....    ...+.+|+.+++.++|++ |+++++++.....    
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~~~   79 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPN-VMKLIGVCFEASSLQKI   79 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCC-eeeEEeeeccCCccccC
Confidence            57889999999999999997654   47899999875422    346788999999999999 9999988765443    


Q ss_pred             --eEEEEeccCCCChHHHh---------hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeee
Q 004835          272 --DCFVLEHVKHDRPEVLK---------KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFN  340 (728)
Q Consensus       272 --~~LV~E~~~~~~l~~l~---------~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFG  340 (728)
                        .++||||+.++++..+.         ..+++..+..++.|++.||.|||+++|+||||||+||+++ +++.+||+|||
T Consensus        80 ~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~-~~~~~kl~dfg  158 (273)
T cd05035          80 PKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLR-EDMTVCVADFG  158 (273)
T ss_pred             cccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEEC-CCCeEEECCcc
Confidence              79999999998886654         1378889999999999999999999999999999999998 66789999999


Q ss_pred             cccc
Q 004835          341 LAMV  344 (728)
Q Consensus       341 lA~~  344 (728)
                      +++.
T Consensus       159 ~~~~  162 (273)
T cd05035         159 LSKK  162 (273)
T ss_pred             ceee
Confidence            9874

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=2.8e-35  Score=311.90  Aligned_cols=148  Identities=26%  Similarity=0.346  Sum_probs=123.3

Q ss_pred             ccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcC-CCCceEEecceEEeCC
Q 004835          195 KVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFG-GKNFIIKYEGCFKCGD  270 (728)
Q Consensus       195 ~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~~  270 (728)
                      .....+++|++.+.||.|+||.||+|.+..+++.||||.+....   ....+.+|+.++.+.. |++ |+++++++....
T Consensus         9 ~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-i~~~~~~~~~~~   87 (296)
T cd06618           9 KYPADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPY-IVKCYGYFITDS   87 (296)
T ss_pred             eccCCcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCc-hHhhheeeecCC
Confidence            33456789999999999999999999998889999999987532   2334566777777765 777 999999999999


Q ss_pred             eeEEEEeccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          271 SDCFVLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..|+||||+.+.+...+.   ..+++..+..++.||+.||+|||+ .||+||||+|+||+++ +++.++|+|||++..
T Consensus        88 ~~~~v~e~~~~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~-~~~~~kL~dfg~~~~  164 (296)
T cd06618          88 DVFICMELMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLD-ASGNVKLCDFGISGR  164 (296)
T ss_pred             eEEEEeeccCcCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEc-CCCCEEECccccchh
Confidence            999999998764333322   237888999999999999999997 5999999999999998 667899999999863

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.6e-35  Score=303.36  Aligned_cols=142  Identities=22%  Similarity=0.317  Sum_probs=123.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-------CchhHHHHHHHHHHhcCCCCceEEecceEEeC--Ce
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-------ASKHYVSNELRMLERFGGKNFIIKYEGCFKCG--DS  271 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~--~~  271 (728)
                      .+|.+.+.||+|+||.||+|.+..+++.||+|.+...       .....+.+|+.++++++|++ |+++++++...  ..
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~-i~~~~~~~~~~~~~~   80 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDR-IVQYYGCLRDPEEKK   80 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCC-cceEEEEEEcCCCCE
Confidence            4799999999999999999999999999999987532       12245778999999999999 99999988754  46


Q ss_pred             eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +++|+||++++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||+++ .++.++|+|||++..
T Consensus        81 ~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~-~~~~~~l~dfg~~~~  155 (264)
T cd06653          81 LSIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRD-SAGNVKLGDFGASKR  155 (264)
T ss_pred             EEEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEc-CCCCEEECccccccc
Confidence            889999999988876543   378889999999999999999999999999999999998 667799999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=3.5e-35  Score=309.92  Aligned_cols=142  Identities=24%  Similarity=0.360  Sum_probs=124.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+|.+.+.||+|+||.||++...     .++..||+|.+....  ....+.+|+.++.++.|++ |+++++++...+..|
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~   83 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEH-IVKFYGVCVEGDPLI   83 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCC-cceEEEEEecCCccE
Confidence            57999999999999999999852     345679999886543  2446889999999999998 999999999999999


Q ss_pred             EEEeccCCCChHHHhh----------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEE
Q 004835          274 FVLEHVKHDRPEVLKK----------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLI  337 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~----------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~  337 (728)
                      +||||+.++.+..+..                .+++..+..++.||+.||+|||++||+||||||+|||++ +.+.++|+
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~-~~~~~kl~  162 (288)
T cd05093          84 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVG-ENLLVKIG  162 (288)
T ss_pred             EEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEc-cCCcEEec
Confidence            9999999988876643                278899999999999999999999999999999999998 66789999


Q ss_pred             eeecccc
Q 004835          338 DFNLAMV  344 (728)
Q Consensus       338 DFGlA~~  344 (728)
                      |||++..
T Consensus       163 dfg~~~~  169 (288)
T cd05093         163 DFGMSRD  169 (288)
T ss_pred             cCCcccc
Confidence            9999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=2.9e-35  Score=312.22  Aligned_cols=141  Identities=24%  Similarity=0.306  Sum_probs=121.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCe--EEEEEeccCcC---chhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGT--VVAIKCPHANA---SKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~--~VAIK~i~~~~---~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      ++|++.+.||+|+||.||+|....++.  .+++|.+....   ....+.+|+.++.++ +|++ |+++++++......|+
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~-iv~~~~~~~~~~~~~l   80 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPN-IINLLGACENRGYLYI   80 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCc-hhheEEEEccCCcceE
Confidence            689999999999999999999877664  47888876422   234578899999999 5777 9999999999999999


Q ss_pred             EEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceE
Q 004835          275 VLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGY  335 (728)
Q Consensus       275 V~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~k  335 (728)
                      ||||++++++..+..                   .+++..+..++.||+.||+|||++||+||||||+|||++ .+..+|
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~-~~~~~k  159 (297)
T cd05089          81 AIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVG-ENLASK  159 (297)
T ss_pred             EEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEEC-CCCeEE
Confidence            999999888766542                   267788999999999999999999999999999999998 667799


Q ss_pred             EEeeeccc
Q 004835          336 LIDFNLAM  343 (728)
Q Consensus       336 L~DFGlA~  343 (728)
                      |+|||++.
T Consensus       160 l~dfg~~~  167 (297)
T cd05089         160 IADFGLSR  167 (297)
T ss_pred             ECCcCCCc
Confidence            99999975

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=5.4e-35  Score=303.34  Aligned_cols=142  Identities=19%  Similarity=0.202  Sum_probs=124.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .++|.+.+.||+|+||.||+|.+. .+..||+|.+.... ....+.+|+.++.++.|++ |+++++++......|+||||
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~-~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd05113           3 PKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEK-LVQLYGVCTKQRPIYIVTEY   80 (256)
T ss_pred             hHHeEEeeEecCcccceEEEEEec-CCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCC-eeeEEEEEccCCCcEEEEEc
Confidence            357999999999999999999885 45579999887532 3456889999999999998 99999999988899999999


Q ss_pred             cCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.++.+..+..    .+++..+..++.||+.||+|||+.||+|+||||+|||++ +++.+||+|||+++.
T Consensus        81 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~-~~~~~kl~d~g~~~~  149 (256)
T cd05113          81 MSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVD-DQGCVKVSDFGLSRY  149 (256)
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEc-CCCCEEECCCcccee
Confidence            99888776553    378899999999999999999999999999999999998 667899999999864

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=5.5e-35  Score=304.30  Aligned_cols=141  Identities=22%  Similarity=0.286  Sum_probs=121.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .++|++.++||+|+||.||+|.+..+ ..||+|++.... ....+.+|+.+++.++|++ |+++++.+. ....|+||||
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~-~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~-i~~~~~~~~-~~~~~lv~e~   81 (262)
T cd05071           5 RESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK-LVQLYAVVS-EEPIYIVTEY   81 (262)
T ss_pred             hHHeeEeeecCCCCCCcEEEEEecCC-ceEEEEecccCccCHHHHHHHHHHHHhCCCCC-cceEEEEEC-CCCcEEEEEc
Confidence            35799999999999999999998654 569999987533 3556889999999999998 899888774 4668999999


Q ss_pred             cCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.++.+..+..     .+++..+..++.|++.||+|||+.+|+||||||+||+++ +++.++|+|||++..
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~-~~~~~~L~dfg~~~~  151 (262)
T cd05071          82 MSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVG-ENLVCKVADFGLARL  151 (262)
T ss_pred             CCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEc-CCCcEEeccCCceee
Confidence            99988766653     278889999999999999999999999999999999999 667799999999864

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5.3e-36  Score=332.21  Aligned_cols=258  Identities=22%  Similarity=0.295  Sum_probs=217.5

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ....+..|.+...||+|.|+.|.+|++..++..||||++.+...    ...+.+|++++..++||| |++++.+......
T Consensus        51 ~~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPn-Ivkl~~v~~t~~~  129 (596)
T KOG0586|consen   51 DSNSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPN-IVKLFSVIETEAT  129 (596)
T ss_pred             ccccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcc-eeeeeeeeeecce
Confidence            34557899999999999999999999999999999999986432    234789999999999999 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          272 DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      +|+||||+.++.+..+..   ++.+..++.++.|++.|++|||+++|||||||.+||||+ .+.++||+|||++.+...+
T Consensus       130 lylV~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~-~~mnikIaDfgfS~~~~~~  208 (596)
T KOG0586|consen  130 LYLVMEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLD-ENMNIKIADFGFSTFFDYG  208 (596)
T ss_pred             eEEEEEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccc-cccceeeeccccceeeccc
Confidence            999999999988776653   367789999999999999999999999999999999999 6677999999999762211


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                      .                                                                               
T Consensus       209 ~-------------------------------------------------------------------------------  209 (596)
T KOG0586|consen  209 L-------------------------------------------------------------------------------  209 (596)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       210 --------------------------------------------------------------------------------  209 (596)
T KOG0586|consen  210 --------------------------------------------------------------------------------  209 (596)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                            .....+|++.|.|||++.+..+.++.+|+||+|+++|.|+.|
T Consensus       210 --------------------------------------~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~G  251 (596)
T KOG0586|consen  210 --------------------------------------MLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEG  251 (596)
T ss_pred             --------------------------------------cccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeec
Confidence                                                  112567999999999999988889999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          589 RTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       589 ~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      ..||.|.+-..+..-                                          .+..+..++--++-+..+||+++
T Consensus       252 sLPFDG~~lk~Lr~r------------------------------------------vl~gk~rIp~~ms~dce~lLrk~  289 (596)
T KOG0586|consen  252 SLPFDGQNLKELRPR------------------------------------------VLRGKYRIPFYMSCDCEDLLRKF  289 (596)
T ss_pred             ccccCCcccccccch------------------------------------------heeeeecccceeechhHHHHHHh
Confidence            999987553322111                                          11122233445778899999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCccchhc
Q 004835          669 LTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      |.++|.+|++.+++++|.|....++.
T Consensus       290 lvl~Pskr~~~dqim~~~W~n~~~~~  315 (596)
T KOG0586|consen  290 LVLNPSKRGPCDQIMKDRWRNDLLEA  315 (596)
T ss_pred             hccCccccCCHHHhhhhcccchhhhh
Confidence            99999999999999999999887766

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.6e-35  Score=304.00  Aligned_cols=142  Identities=20%  Similarity=0.210  Sum_probs=124.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ..+|++.+.||+|+||.||+|.+. ++..+|+|++... .....+.+|+.+++.+.|++ |+++++++...+..|+||||
T Consensus         3 ~~~~~~~~~lg~G~~~~v~~~~~~-~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd05059           3 PSELTFLKELGSGQFGVVHLGKWR-GKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPN-LVQLYGVCTKQRPIFIVTEY   80 (256)
T ss_pred             hHHcchhhhhccCCCceEEEeEec-CCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCC-EEEEEEEEcCCCceEEEEec
Confidence            347899999999999999999986 5678999988653 33456788999999999998 99999999999999999999


Q ss_pred             cCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++.+..+..    .+++..+..++.||+.||+|||++||+||||||+||+++ +++.++|+|||+++.
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~-~~~~~kl~dfg~~~~  149 (256)
T cd05059          81 MANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVG-EDNVVKVSDFGLARY  149 (256)
T ss_pred             CCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEEEC-CCCcEEECCccccee
Confidence            99888766542    378889999999999999999999999999999999999 667899999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=1.7e-35  Score=321.48  Aligned_cols=142  Identities=23%  Similarity=0.315  Sum_probs=119.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcC-----CCeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecceEEe-CC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGCFKC-GD  270 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~-----~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~-~~  270 (728)
                      ++|++.+.||+|+||.||+|....     +++.||+|++.....   ...+.+|+.++.++ .|+| |+++++++.. +.
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~n-iv~~~~~~~~~~~   85 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLN-VVNLLGACTKPGG   85 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcc-hhheeeeEecCCC
Confidence            479999999999999999997543     457899999875432   23567899999999 6777 9999987764 45


Q ss_pred             eeEEEEeccCCCChHHHhh-------------------------------------------------------------
Q 004835          271 SDCFVLEHVKHDRPEVLKK-------------------------------------------------------------  289 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~-------------------------------------------------------------  289 (728)
                      .++++|||++++.+..++.                                                             
T Consensus        86 ~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (337)
T cd05054          86 PLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDEL  165 (337)
T ss_pred             CEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHH
Confidence            7889999999988765542                                                             


Q ss_pred             ---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          290 ---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       290 ---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                         .+++..+..++.||+.||+|||++||+||||||+|||++ +++.++|+|||++..
T Consensus       166 ~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~-~~~~vkL~DfG~a~~  222 (337)
T cd05054         166 YKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLS-ENNVVKICDFGLARD  222 (337)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEe-CCCcEEEeccccchh
Confidence               367888999999999999999999999999999999999 667899999999874

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=5.2e-35  Score=309.12  Aligned_cols=143  Identities=24%  Similarity=0.354  Sum_probs=124.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcCc--hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~~--~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+|.+.+.||+|+||.||+|.+.     .++..+++|.+.....  ...+.+|+.++++++|++ |+++++++..+...
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~   82 (291)
T cd05094           4 RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEH-IVKFYGVCGDGDPL   82 (291)
T ss_pred             hHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCC-cceEEEEEccCCce
Confidence            357999999999999999999864     2456799998865433  356889999999999998 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCc
Q 004835          273 CFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK  333 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~  333 (728)
                      ++||||+.++++..+..                   .+++..++.++.||+.||+|||++||+||||||+|||++ +++.
T Consensus        83 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~-~~~~  161 (291)
T cd05094          83 IMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVG-ANLL  161 (291)
T ss_pred             EEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEc-cCCc
Confidence            99999999988876642                   267889999999999999999999999999999999999 6678


Q ss_pred             eEEEeeecccc
Q 004835          334 GYLIDFNLAMV  344 (728)
Q Consensus       334 ~kL~DFGlA~~  344 (728)
                      ++|+|||++..
T Consensus       162 ~~l~dfg~a~~  172 (291)
T cd05094         162 VKIGDFGMSRD  172 (291)
T ss_pred             EEECCCCcccc
Confidence            99999999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=9.4e-36  Score=342.15  Aligned_cols=143  Identities=24%  Similarity=0.282  Sum_probs=119.7

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcC-CCCceEEecce-EEe------
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFG-GKNFIIKYEGC-FKC------  268 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~-~~~------  268 (728)
                      .-.+++|.+.|.+|||+.||+|.+...|..||+|.+-...  ....+.+||.+|+.|. |+| ||.|++. ...      
T Consensus        35 g~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~n-IV~yidss~~~~~~~~~  113 (738)
T KOG1989|consen   35 GSHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKN-IVSYIDSSAINRSSNNG  113 (738)
T ss_pred             CCEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCc-eeeEeccccccccCCCc
Confidence            3457899999999999999999998877999999876542  3456789999999999 555 9999993 221      


Q ss_pred             CCeeEEEEeccCC-CChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCC--cEeccCCCCceEeecCCCceEEEeeec
Q 004835          269 GDSDCFVLEHVKH-DRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQG--IVHRDVKPGNFLFSCKAVKGYLIDFNL  341 (728)
Q Consensus       269 ~~~~~LV~E~~~~-~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~g--IIHRDIKPeNILld~~~~~~kL~DFGl  341 (728)
                      .-.++|.||||.+ ++++.+..    .|.+.+++.|++++++|+++||...  |||||||-|||||+ .++..||||||.
T Consensus       114 ~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls-~~g~~KLCDFGS  192 (738)
T KOG1989|consen  114 VWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLS-ADGNYKLCDFGS  192 (738)
T ss_pred             eeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEc-CCCCEEeCcccc
Confidence            1356889999996 55555543    3899999999999999999999987  99999999999999 666899999999


Q ss_pred             cc
Q 004835          342 AM  343 (728)
Q Consensus       342 A~  343 (728)
                      |.
T Consensus       193 at  194 (738)
T KOG1989|consen  193 AT  194 (738)
T ss_pred             cc
Confidence            85

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=6.9e-35  Score=312.72  Aligned_cols=140  Identities=29%  Similarity=0.446  Sum_probs=122.9

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .|...+.||+|+||.||+|++..++..||+|++....     ....+.+|+.+++.+.|++ ++++++++..+...|+||
T Consensus        26 ~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~  104 (317)
T cd06635          26 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPN-SIEYKGCYLREHTAWLVM  104 (317)
T ss_pred             hhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCC-EEEEEEEEeeCCeEEEEE
Confidence            4788899999999999999999899999999986431     1245778999999999998 999999999999999999


Q ss_pred             eccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          277 EHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       277 E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      ||+.+.+++.+.   ..+++..+..++.||+.||.|||++||+||||+|+||+++ ..+.++|+|||++.
T Consensus       105 e~~~g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~-~~~~~kl~dfg~~~  173 (317)
T cd06635         105 EYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLT-EPGQVKLADFGSAS  173 (317)
T ss_pred             eCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEEC-CCCCEEEecCCCcc
Confidence            999986655543   2378899999999999999999999999999999999998 56779999999875

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=5.4e-35  Score=311.65  Aligned_cols=144  Identities=22%  Similarity=0.285  Sum_probs=123.6

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcC-------CCeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecceEE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKN-------DGTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGCFK  267 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~-------~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~  267 (728)
                      ..++|.+.+.||+|+||.||+|++..       ++..||+|.+.....   ...+.+|+.++..+ +|++ |+++++++.
T Consensus        16 ~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~-i~~~~~~~~   94 (307)
T cd05098          16 PRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN-IINLLGACT   94 (307)
T ss_pred             ehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCC-EeeEEEEEe
Confidence            35789999999999999999998743       235799999875422   34577899999999 6887 999999999


Q ss_pred             eCCeeEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS  328 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld  328 (728)
                      ..+..|+||||+.++.+..+..                   .+++.+++.++.||+.||+|||++||+||||||+|||++
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~  174 (307)
T cd05098          95 QDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVT  174 (307)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEc
Confidence            9999999999999988766543                   267888999999999999999999999999999999999


Q ss_pred             cCCCceEEEeeecccc
Q 004835          329 CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       329 ~~~~~~kL~DFGlA~~  344 (728)
                       +++.++|+|||++..
T Consensus       175 -~~~~~kL~dfg~a~~  189 (307)
T cd05098         175 -EDNVMKIADFGLARD  189 (307)
T ss_pred             -CCCcEEECCCccccc
Confidence             667899999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-37  Score=332.58  Aligned_cols=143  Identities=24%  Similarity=0.289  Sum_probs=123.4

Q ss_pred             ccccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          193 NAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       193 ~~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .+.+..-++...-++-||.|+.|.||+|+.  .++.||||+++.-     -..+|.-|++|.|+| |+.|.++|.....+
T Consensus       116 ~e~WeiPFe~IsELeWlGSGaQGAVF~Grl--~netVAVKKV~el-----kETdIKHLRkLkH~N-II~FkGVCtqsPcy  187 (904)
T KOG4721|consen  116 EELWEIPFEEISELEWLGSGAQGAVFLGRL--HNETVAVKKVREL-----KETDIKHLRKLKHPN-IITFKGVCTQSPCY  187 (904)
T ss_pred             hhhccCCHHHhhhhhhhccCcccceeeeec--cCceehhHHHhhh-----hhhhHHHHHhccCcc-eeeEeeeecCCcee
Confidence            344555566666677899999999999999  4899999986432     235788899999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||||||..|-|..+++.   +.......+..+|+.|+.|||.+.|||||||.-||||. .+..+||+|||.++.
T Consensus       188 CIiMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs-~~d~VKIsDFGTS~e  261 (904)
T KOG4721|consen  188 CIIMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILIS-YDDVVKISDFGTSKE  261 (904)
T ss_pred             EEeeeccccccHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEee-ccceEEeccccchHh
Confidence            999999999988877653   77888889999999999999999999999999999999 556799999999975

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-37  Score=332.00  Aligned_cols=270  Identities=23%  Similarity=0.351  Sum_probs=226.6

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+.+++++..||-|+||.|=++........+|+|++++.     ...+.+..|-.||..+..+. |+++|..|.+..+.
T Consensus       417 v~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~f-IvrLYrTfrd~kyv  495 (732)
T KOG0614|consen  417 VKLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDF-IVRLYRTFRDSKYV  495 (732)
T ss_pred             cchhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchH-HHHHHHHhccchhh
Confidence            3466888999999999999999998765556999998753     34566788999999998655 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |++||.|-||.+..+.+   .|+...+++|+.++++|++|||++|||+|||||+|+|++ ..+.+||.|||+|+.+..+ 
T Consensus       496 YmLmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd-~~Gy~KLVDFGFAKki~~g-  573 (732)
T KOG0614|consen  496 YMLMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLLLD-NRGYLKLVDFGFAKKIGSG-  573 (732)
T ss_pred             hhhHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhcCceeccCChhheeec-cCCceEEeehhhHHHhccC-
Confidence            99999999988877654   399999999999999999999999999999999999999 6667999999999863211 


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       574 --------------------------------------------------------------------------------  573 (732)
T KOG0614|consen  574 --------------------------------------------------------------------------------  573 (732)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       574 --------------------------------------------------------------------------------  573 (732)
T KOG0614|consen  574 --------------------------------------------------------------------------------  573 (732)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                          .++-.++|||.|.|||+++..+| +.++|.||||+++|||++|.
T Consensus       574 ------------------------------------~KTwTFcGTpEYVAPEIILnKGH-D~avDyWaLGIli~ELL~G~  616 (732)
T KOG0614|consen  574 ------------------------------------RKTWTFCGTPEYVAPEIILNKGH-DRAVDYWALGILIYELLTGS  616 (732)
T ss_pred             ------------------------------------CceeeecCCcccccchhhhccCc-chhhHHHHHHHHHHHHHcCC
Confidence                                                12336789999999999999998 99999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          590 TPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       590 ~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      +||.+.++...+.++ +.|                                       ....+|+..++..+.+||+++.
T Consensus       617 pPFs~~dpmktYn~I-LkG---------------------------------------id~i~~Pr~I~k~a~~Lik~LC  656 (732)
T KOG0614|consen  617 PPFSGVDPMKTYNLI-LKG---------------------------------------IDKIEFPRRITKTATDLIKKLC  656 (732)
T ss_pred             CCCCCCchHHHHHHH-Hhh---------------------------------------hhhhhcccccchhHHHHHHHHH
Confidence            999998876555443 111                                       0123456788999999999999


Q ss_pred             ccCCCCCCC-----HHHHhcCCCCccchhcchHhHhhhccccc
Q 004835          670 TVNPRLRIS-----AEDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       670 ~~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      ..+|.+|..     +.++-+|-||.+..|.--..+.+++....
T Consensus       657 r~~P~ERLG~~~~gI~DIkkH~Wf~gfdweglr~~~L~pPi~~  699 (732)
T KOG0614|consen  657 RDNPTERLGYQKGGINDIKKHRWFEGFDWEGLRSRTLPPPIIP  699 (732)
T ss_pred             hcCcHhhhccccCChHHHHhhhhhhcCChhhhhhccCCCCccc
Confidence            999999987     89999999999999877666666655443

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=8.5e-35  Score=298.91  Aligned_cols=141  Identities=29%  Similarity=0.418  Sum_probs=125.5

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +|++.+.||.|+||.||++.+..+++.||+|.+...    .....+.+|+.+++.++|++ |+++.+++......|+|||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~v~e   79 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN-IISYKEAFLDGNKLCIVME   79 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCC-chhhhhhhccCCEEEEEeh
Confidence            589999999999999999999989999999998643    22345678999999999998 9999999999999999999


Q ss_pred             ccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++++++..+..       .+++..+..++.|++.||+|||+.|++|+||+|+||+++ +++.++|+|||++..
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~-~~~~~kl~d~g~~~~  152 (256)
T cd08530          80 YAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLV-ANDLVKIGDLGISKV  152 (256)
T ss_pred             hcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEe-cCCcEEEeeccchhh
Confidence            999988876542       378889999999999999999999999999999999999 567799999999864

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=8.7e-35  Score=302.46  Aligned_cols=143  Identities=24%  Similarity=0.289  Sum_probs=126.1

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCC---CeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKND---GTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~---g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .++|++.+.||+|+||.||+|.+..+   ...||||.+.....   ...+.+|+.++.+++|++ |+++++++...+..|
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~   81 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPN-IIRLEGVVTKSRPVM   81 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCC-cceEeEEEecCCceE
Confidence            35799999999999999999998644   45899999875432   345788999999999998 999999999999999


Q ss_pred             EEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+.++.+..+..    .+++..+..++.|++.||+|||+++|+||||||+|||++ +++.++|+|||++..
T Consensus        82 iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~-~~~~~~l~dfg~~~~  155 (266)
T cd05033          82 IITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVN-SNLVCKVSDFGLSRR  155 (266)
T ss_pred             EEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEc-CCCCEEECccchhhc
Confidence            9999999988877653    378999999999999999999999999999999999999 667799999999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=3.2e-35  Score=304.18  Aligned_cols=141  Identities=24%  Similarity=0.346  Sum_probs=126.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc--hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~--~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .+|++.++||.|+||.||+|.+.. +..+|+|++.....  ...+.+|+.+++.++|++ |+++++++......++||||
T Consensus         6 ~~y~~~~~ig~g~~~~vy~~~~~~-~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~lv~e~   83 (261)
T cd05148           6 EEFTLERKLGSGYFGEVWEGLWKN-RVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKH-LISLFAVCSVGEPVYIITEL   83 (261)
T ss_pred             HHHHHhhhhccCCCccEEEeEecC-CCcEEEEeccccchhhHHHHHHHHHHHhcCCCcc-hhheeeeEecCCCeEEEEee
Confidence            469999999999999999999976 89999999876543  456889999999999998 99999999999999999999


Q ss_pred             cCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++.+..+..     .+++..+..++.||+.||.|||++||+||||||+||+++ +++.++|+|||++..
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~-~~~~~kl~d~g~~~~  153 (261)
T cd05148          84 MEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVG-EDLVCKVADFGLARL  153 (261)
T ss_pred             cccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEc-CCceEEEccccchhh
Confidence            99988877653     378899999999999999999999999999999999999 667899999999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=7.4e-35  Score=306.86  Aligned_cols=141  Identities=23%  Similarity=0.310  Sum_probs=120.9

Q ss_pred             CeeEEEEecccCceEEEEEEEc---CCCeEEEEEeccCc------CchhHHHHHHHHHHhcC-CCCceEEecceEEeCCe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRK---NDGTVVAIKCPHAN------ASKHYVSNELRMLERFG-GKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~---~~g~~VAIK~i~~~------~~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~~~  271 (728)
                      +|++.+.||+|+||.||+|+..   .+++.||||++...      .....+.+|+.++.++. |++ |+++++++..+..
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~-i~~~~~~~~~~~~   79 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPF-LVTLHYAFQTDTK   79 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcc-hhhhheeeecCCE
Confidence            4889999999999999999864   46789999988642      22345778999999996 555 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .|+||||+.++.+.....   .+++..++.++.|++.||.|||+.|++||||||.||+++ .++.++|+|||++..
T Consensus        80 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~-~~~~~~l~dfg~~~~  154 (288)
T cd05583          80 LHLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLD-SEGHVVLTDFGLSKE  154 (288)
T ss_pred             EEEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEEC-CCCCEEEEECccccc
Confidence            999999999887765542   378889999999999999999999999999999999998 566799999999864

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=1.5e-34  Score=299.25  Aligned_cols=142  Identities=28%  Similarity=0.363  Sum_probs=126.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||.||+|.+..+|+.||+|.++..     .....+.+|+.+++++.|++ |+++++++...+..++|
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~-i~~~~~~~~~~~~~~lv   80 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPN-VIKYLASFIENNELNIV   80 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCC-eeeeeeeeecCCeEEEE
Confidence            6899999999999999999999989999999987632     22456889999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||++++.+..+..       .+++..+..++.||+.||.|||+.||+||||||+||+++ .++.++|+|||++..
T Consensus        81 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~-~~~~~~l~d~~~~~~  155 (267)
T cd08224          81 LELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFIT-ATGVVKLGDLGLGRF  155 (267)
T ss_pred             EecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEEC-CCCcEEEeccceeee
Confidence            99999988876542       268889999999999999999999999999999999998 667799999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1e-34  Score=306.36  Aligned_cols=141  Identities=23%  Similarity=0.333  Sum_probs=122.4

Q ss_pred             CeeEEEEecccCceEEEEEEEcC-----CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~-----~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      +|++.+.||+|+||.||+|....     ....+|+|.+.....   ...+.+|+.++..+.|++ |+++++++...+..+
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~   79 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPH-VIKLYGACSQDGPLL   79 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCC-EeeEEEEEecCCCcE
Confidence            47889999999999999998743     336799998875433   345788999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---------------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceE
Q 004835          274 FVLEHVKHDRPEVLKK---------------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFL  326 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---------------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNIL  326 (728)
                      +|+||+.++.+..+..                           .+++..+..++.|++.||.|||+.||+||||||+|||
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nil  159 (290)
T cd05045          80 LIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVL  159 (290)
T ss_pred             EEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEE
Confidence            9999999988876542                           2667888999999999999999999999999999999


Q ss_pred             eecCCCceEEEeeecccc
Q 004835          327 FSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       327 ld~~~~~~kL~DFGlA~~  344 (728)
                      ++ +++.++|+|||++..
T Consensus       160 l~-~~~~~kl~dfg~~~~  176 (290)
T cd05045         160 VA-EGRKMKISDFGLSRD  176 (290)
T ss_pred             Ec-CCCcEEecccccccc
Confidence            98 677899999999864

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=1.1e-34  Score=304.04  Aligned_cols=142  Identities=23%  Similarity=0.268  Sum_probs=121.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCe----EEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGT----VVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~----~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .++|++.+.||+|+||+||+|++..+|.    .||+|++.....   ...+.+|+.++..+.|++ |+++++++.. ...
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~-~~~   83 (279)
T cd05109           6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPY-VCRLLGICLT-STV   83 (279)
T ss_pred             hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCC-CceEEEEEcC-CCc
Confidence            4689999999999999999999877776    489998865432   345778999999999998 8888888864 457


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++||++++.+..+..    .+++..+..++.||+.||+|||++||+||||||+|||++ +++.+||+|||+++.
T Consensus        84 ~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~-~~~~~kL~dfG~~~~  158 (279)
T cd05109          84 QLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVK-SPNHVKITDFGLARL  158 (279)
T ss_pred             EEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEc-CCCcEEECCCCceee
Confidence            89999999888766543    378999999999999999999999999999999999998 666799999999874

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=1.3e-34  Score=300.13  Aligned_cols=141  Identities=19%  Similarity=0.286  Sum_probs=122.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .++|++.+.||+|+||.||+|.+. ++..||+|.+... .....+.+|+.++++++|++ ++++++++. ....|+||||
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~-~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~-i~~~~~~~~-~~~~~lv~e~   81 (260)
T cd05070           5 RESLQLIKKLGNGQFGEVWMGTWN-GNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDK-LVQLYAVVS-EEPIYIVTEY   81 (260)
T ss_pred             hHHhhhhheeccccCceEEEEEec-CCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCc-eEEEEeEEC-CCCcEEEEEe
Confidence            357999999999999999999875 5677999998753 33556889999999999998 899988775 4568999999


Q ss_pred             cCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.++.+..+..     .+++..++.++.|++.||+|||+.||+||||||+||+++ +++.++|+|||++..
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~-~~~~~~l~dfg~~~~  151 (260)
T cd05070          82 MSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVG-DGLVCKIADFGLARL  151 (260)
T ss_pred             cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEe-CCceEEeCCceeeee
Confidence            99988876653     278899999999999999999999999999999999999 677899999999864

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=8.6e-35  Score=306.06  Aligned_cols=143  Identities=28%  Similarity=0.400  Sum_probs=128.1

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .+.|++...||.|+||.||+|.+..++..||+|++..... ...+.+|+.++..++|+| |+++++++......|+|+||
T Consensus        18 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~lv~e~   96 (286)
T cd06614          18 RELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPN-IVDYYDSYLVGDELWVVMEY   96 (286)
T ss_pred             cccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCC-eeEEEEEEEECCEEEEEEec
Confidence            3468899999999999999999988899999999875443 556789999999999998 99999999999999999999


Q ss_pred             cCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++.+..+..    .+++..+..++.|++.||+|||+.||+|+||+|+||+++ .++.++|+|||++..
T Consensus        97 ~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~-~~~~~~l~d~~~~~~  165 (286)
T cd06614          97 MDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLS-KDGSVKLADFGFAAQ  165 (286)
T ss_pred             cCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEc-CCCCEEECccchhhh
Confidence            99888876653    478899999999999999999999999999999999999 667799999998753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-36  Score=331.90  Aligned_cols=246  Identities=28%  Similarity=0.328  Sum_probs=200.0

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +..+.|.+...+|.|+|+.|-.+.+..+++.+++|++...  .....+|+.++....++.+|+++.+.+..+.+.|+|||
T Consensus       319 ~~~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~--~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e  396 (612)
T KOG0603|consen  319 PFTESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKR--ADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVME  396 (612)
T ss_pred             CcchhhccccccCCCCccceeeeeccccccchhheecccc--ccccccccchhhhhcCCCcceeecceecCCceeeeeeh
Confidence            3578999999999999999999999999999999998766  23344677666665544449999999999999999999


Q ss_pred             ccCCCChHHHhhc--CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccC
Q 004835          278 HVKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATL  355 (728)
Q Consensus       278 ~~~~~~l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~  355 (728)
                      ++.++.+..-+..  ....++..|+++|+.|+.|||++|||||||||+|||++...+.++|+|||.++.....       
T Consensus       397 ~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~-------  469 (612)
T KOG0603|consen  397 LLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS-------  469 (612)
T ss_pred             hccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchh-------
Confidence            9998866444332  3336777899999999999999999999999999999536677999999999752100       


Q ss_pred             CCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCc
Q 004835          356 PGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTP  435 (728)
Q Consensus       356 ~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (728)
                                                                                                      
T Consensus       470 --------------------------------------------------------------------------------  469 (612)
T KOG0603|consen  470 --------------------------------------------------------------------------------  469 (612)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCC
Q 004835          436 AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSD  515 (728)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  515 (728)
                                                                                                      
T Consensus       470 --------------------------------------------------------------------------------  469 (612)
T KOG0603|consen  470 --------------------------------------------------------------------------------  469 (612)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 004835          516 LSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD  595 (728)
Q Consensus       516 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~  595 (728)
                                                      ....+=|..|.|||++. ...|+.++||||||++||+|++|+.||...
T Consensus       470 --------------------------------~~tp~~t~~y~APEvl~-~~~yt~acD~WSLGvlLy~ML~G~tp~~~~  516 (612)
T KOG0603|consen  470 --------------------------------CDTPALTLQYVAPEVLA-IQEYTEACDWWSLGVLLYEMLTGRTLFAAH  516 (612)
T ss_pred             --------------------------------hcccchhhcccChhhhc-cCCCCcchhhHHHHHHHHHHHhCCCccccC
Confidence                                            00113478899999996 445799999999999999999999999876


Q ss_pred             ChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCC
Q 004835          596 PEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL  675 (728)
Q Consensus       596 ~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~  675 (728)
                      +.+  .+|+..++                                         .+.|...+|..++|||.+||++||.+
T Consensus       517 P~~--~ei~~~i~-----------------------------------------~~~~s~~vS~~AKdLl~~LL~~dP~~  553 (612)
T KOG0603|consen  517 PAG--IEIHTRIQ-----------------------------------------MPKFSECVSDEAKDLLQQLLQVDPAL  553 (612)
T ss_pred             Cch--HHHHHhhc-----------------------------------------CCccccccCHHHHHHHHHhccCChhh
Confidence            654  22332222                                         23445789999999999999999999


Q ss_pred             CCCHHHHhcCCCC
Q 004835          676 RISAEDALKHEFF  688 (728)
Q Consensus       676 Rpta~e~L~Hp~f  688 (728)
                      |+++.+++.||||
T Consensus       554 Rl~~~~i~~h~w~  566 (612)
T KOG0603|consen  554 RLGADEIGAHPWF  566 (612)
T ss_pred             CcChhhhccCcch
Confidence            9999999999999

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=7.6e-35  Score=303.16  Aligned_cols=140  Identities=18%  Similarity=0.280  Sum_probs=116.8

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCe--EEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEe------CC
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGT--VVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKC------GD  270 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~--~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~------~~  270 (728)
                      |.+.+.||+|+||.||+|.+..++.  .||+|.+...    .....+.+|+.++..++|+| |+++++.+..      ..
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~~~~   79 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPN-VMRLIGVCLQTVESEGYP   79 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCC-cceEEEEEccCCcccCCC
Confidence            3567899999999999999977665  6999987643    22345788999999999999 9998886532      23


Q ss_pred             eeEEEEeccCCCChHHHh---------hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeec
Q 004835          271 SDCFVLEHVKHDRPEVLK---------KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNL  341 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~---------~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGl  341 (728)
                      ..++||||+.++.+..+.         ..+++..+..++.||+.||+|||++||+||||||+|||++ .++.++|+|||+
T Consensus        80 ~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~-~~~~~kl~Dfg~  158 (272)
T cd05075          80 SPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLN-ENMNVCVADFGL  158 (272)
T ss_pred             CcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEc-CCCCEEECCCCc
Confidence            578999999988876543         1267889999999999999999999999999999999998 667899999999


Q ss_pred             ccc
Q 004835          342 AMV  344 (728)
Q Consensus       342 A~~  344 (728)
                      +..
T Consensus       159 ~~~  161 (272)
T cd05075         159 SKK  161 (272)
T ss_pred             ccc
Confidence            874

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=6.6e-35  Score=346.13  Aligned_cols=143  Identities=20%  Similarity=0.255  Sum_probs=126.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +++|++.++||+|+||.||+|++..+|+.||||++....     ...++.+|+.++.++.|+| |+++++++..++..|+
T Consensus         1 igrYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPN-IVkl~~v~~d~~~lyL   79 (932)
T PRK13184          1 MQRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPG-IVPVYSICSDGDPVYY   79 (932)
T ss_pred             CCCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcC-cCeEEEEEeeCCEEEE
Confidence            468999999999999999999999999999999987432     2346889999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhhc--------------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeee
Q 004835          275 VLEHVKHDRPEVLKKE--------------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFN  340 (728)
Q Consensus       275 V~E~~~~~~l~~l~~~--------------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFG  340 (728)
                      ||||++++++..+...              +++..+..++.||+.||+|||++||+||||||+|||++ .++.++|+|||
T Consensus        80 VMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd-~dg~vKLiDFG  158 (932)
T PRK13184         80 TMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLG-LFGEVVILDWG  158 (932)
T ss_pred             EEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEc-CCCCEEEEecC
Confidence            9999999988765431              34567788999999999999999999999999999999 66779999999


Q ss_pred             cccc
Q 004835          341 LAMV  344 (728)
Q Consensus       341 lA~~  344 (728)
                      ++..
T Consensus       159 LAk~  162 (932)
T PRK13184        159 AAIF  162 (932)
T ss_pred             ccee
Confidence            9975

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=1.5e-34  Score=299.74  Aligned_cols=140  Identities=19%  Similarity=0.298  Sum_probs=122.0

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      ++|+++++||+|+||.||+|... +++.||+|.+... .....+.+|+.++++++|++ |+++++++. .+..|+||||+
T Consensus         6 ~~~~~~~~ig~G~~g~v~~~~~~-~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05067           6 ETLKLVKKLGAGQFGEVWMGYYN-GHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPR-LVRLYAVVT-QEPIYIITEYM   82 (260)
T ss_pred             HHceeeeeeccCccceEEeeecC-CCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcC-eeeEEEEEc-cCCcEEEEEcC
Confidence            57999999999999999999975 6788999988754 33557889999999999998 999988764 56789999999


Q ss_pred             CCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          280 KHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       280 ~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .++.+..+..     .+++..+..++.|++.||+|||+.||+||||||+||+++ +++.++|+|||++..
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~-~~~~~~l~dfg~~~~  151 (260)
T cd05067          83 ENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVS-ETLCCKIADFGLARL  151 (260)
T ss_pred             CCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEc-CCCCEEEccCcceee
Confidence            9888766542     378889999999999999999999999999999999999 667899999999864

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.1e-34  Score=298.84  Aligned_cols=142  Identities=21%  Similarity=0.243  Sum_probs=125.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .++|++.+.||+|+||.||+|.+. +++.||+|.++... ....+.+|+.++++++|++ |+++++++...+..|+||||
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~-~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~   82 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWN-NTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPK-LIQLYAVCTLEEPIYIVTEL   82 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEec-CCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCC-ccceeEEEecCCCeeeeeec
Confidence            457999999999999999999975 56789999987543 3456889999999999998 99999999999999999999


Q ss_pred             cCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.++.+..+..     .+++..+..++.|++.||.|||++||+||||||+||+++ +++.++|+|||++..
T Consensus        83 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~-~~~~~~l~dfg~~~~  152 (261)
T cd05068          83 MKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVG-ENNICKVADFGLARV  152 (261)
T ss_pred             ccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEc-CCCCEEECCcceEEE
Confidence            98887766642     378899999999999999999999999999999999999 667799999999975

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.3e-34  Score=304.19  Aligned_cols=141  Identities=24%  Similarity=0.336  Sum_probs=121.3

Q ss_pred             Ce-eEEEEecccCceEEEEEEE----cCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeC--Ce
Q 004835          202 SF-IVEEEEGSGGYGTVYRARR----KNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCG--DS  271 (728)
Q Consensus       202 ~y-~i~~~LG~G~fG~Vy~a~~----~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~--~~  271 (728)
                      +| ++.+.||+|+||+||++.+    ..++..||+|++....   ....+.+|+.+++++.|++ |+++++++...  ..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~   82 (283)
T cd05080           4 RYLKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHEN-IVKYKGCCSEQGGKG   82 (283)
T ss_pred             hhceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCC-EeeEEEEEecCCCce
Confidence            45 8999999999999988754    3467899999987543   2456778999999999999 99999887653  46


Q ss_pred             eEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .|+||||+.++++..+..  .+++..+..++.|++.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        83 ~~lv~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~-~~~~~~l~dfg~~~~  156 (283)
T cd05080          83 LQLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLD-NDRLVKIGDFGLAKA  156 (283)
T ss_pred             EEEEecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEEEc-CCCcEEEeecccccc
Confidence            899999999998877654  489999999999999999999999999999999999998 567799999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=2.1e-34  Score=298.99  Aligned_cols=141  Identities=21%  Similarity=0.290  Sum_probs=120.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .++|.+.+.||+|+||.||+|.+..+ ..||+|.+... .....+.+|+.+++++.|++ ++++++++. .+..|+||||
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~-~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~-~~~~~~v~e~   81 (260)
T cd05069           5 RESLRLDVKLGQGCFGEVWMGTWNGT-TKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDK-LVPLYAVVS-EEPIYIVTEF   81 (260)
T ss_pred             hHHeeeeeeecCcCCCeEEEEEEcCC-ceEEEEEcccCCccHHHHHHHHHHHHhCCCCC-eeeEEEEEc-CCCcEEEEEc
Confidence            35799999999999999999998644 46999987653 33456789999999999999 888888775 5678999999


Q ss_pred             cCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.++.+..+...     +++..+..++.|++.||.|||+.||+||||||+||+++ +++.++|+|||++..
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~-~~~~~~l~dfg~~~~  151 (260)
T cd05069          82 MGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVG-DNLVCKIADFGLARL  151 (260)
T ss_pred             CCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEc-CCCeEEECCCccceE
Confidence            998776655432     67888999999999999999999999999999999999 677899999999864

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=6.5e-35  Score=302.06  Aligned_cols=140  Identities=20%  Similarity=0.331  Sum_probs=120.5

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-------CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-------ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +|.+.+.||+|+||.||+|++..++..+++|+++..       .....+.+|+.++..++|+| |+++++++......++
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~l   79 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPA-IVKFHASFLERDAFCI   79 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCc-HHHHHHHHhcCCceEE
Confidence            589999999999999999999877777777766531       12334667999999999999 9999999998999999


Q ss_pred             EEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.++++..+..       .+++..++.++.|++.||.|||+.|++|+||||+||+++ + +.++|+|||++..
T Consensus        80 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~-~-~~~~l~d~g~~~~  154 (260)
T cd08222          80 ITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLK-N-NLLKIGDFGVSRL  154 (260)
T ss_pred             EEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEee-c-CCEeecccCceee
Confidence            999999988876542       378899999999999999999999999999999999997 4 3589999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-35  Score=305.17  Aligned_cols=273  Identities=24%  Similarity=0.380  Sum_probs=224.2

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|.+..+||+|+|+.|.+++.+.+.+.||+|+++++     .....++.|-.+.......++++-+..||++...++
T Consensus       248 ~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlf  327 (593)
T KOG0695|consen  248 GLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLF  327 (593)
T ss_pred             ccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEE
Confidence            467999999999999999999999999999999998753     345678889999999887778999999999999999


Q ss_pred             EEEeccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +|.||++||.+-...   ++++++.++++...|+.||.|||++|||+||||.+|+||| ..+.+||+|+|+++..-..  
T Consensus       328 fvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rgiiyrdlkldnvlld-aeghikltdygmcke~l~~--  404 (593)
T KOG0695|consen  328 FVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLD-AEGHIKLTDYGMCKEGLGP--  404 (593)
T ss_pred             EEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEc-cCCceeecccchhhcCCCC--
Confidence            999999998875433   4599999999999999999999999999999999999999 5567999999999741000  


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       405 --------------------------------------------------------------------------------  404 (593)
T KOG0695|consen  405 --------------------------------------------------------------------------------  404 (593)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       405 --------------------------------------------------------------------------------  404 (593)
T KOG0695|consen  405 --------------------------------------------------------------------------------  404 (593)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                        ..-++.++|||.|.|||+| +...|++.+|||+|||+++||+.|+.
T Consensus       405 ----------------------------------gd~tstfcgtpnyiapeil-rgeeygfsvdwwalgvlmfemmagrs  449 (593)
T KOG0695|consen  405 ----------------------------------GDTTSTFCGTPNYIAPEIL-RGEEYGFSVDWWALGVLMFEMMAGRS  449 (593)
T ss_pred             ----------------------------------CcccccccCCCcccchhhh-cccccCceehHHHHHHHHHHHHcCCC
Confidence                                              0112367899999999999 55557999999999999999999999


Q ss_pred             CCCC---CC-hHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          591 PFFG---DP-EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       591 PF~~---~~-~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      ||.-   ++ +++....                                      -+.-++.+...++..++-.+..++.
T Consensus       450 pfdivgm~n~d~ntedy--------------------------------------lfqvilekqiriprslsvkas~vlk  491 (593)
T KOG0695|consen  450 PFDIVGMDNPDMNTEDY--------------------------------------LFQVILEKQIRIPRSLSVKASHVLK  491 (593)
T ss_pred             CcceecCCCcccchhHH--------------------------------------HHHHHhhhcccccceeehhhHHHHH
Confidence            9952   11 1111110                                      0112233445566777888889999


Q ss_pred             HhcccCCCCCCC------HHHHhcCCCCccchhcchHhHhhhccccc
Q 004835          667 KCLTVNPRLRIS------AEDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       667 ~~L~~dP~~Rpt------a~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      ..|..||.+|..      ..++-.|+||+.+.|.+-.|+-+.+...+
T Consensus       492 gflnkdp~erlgc~~~~g~~dik~h~ffr~idwd~leqk~v~ppf~p  538 (593)
T KOG0695|consen  492 GFLNKDPKERLGCRPQTGFSDIKSHAFFRSIDWDLLEQKQVLPPFQP  538 (593)
T ss_pred             HhhcCCcHHhcCCCcccchhhhhcchhhhhCCHHHHhhcccCCCCCC
Confidence            999999999975      78999999999999999999887776655

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-34  Score=297.20  Aligned_cols=136  Identities=24%  Similarity=0.374  Sum_probs=120.9

Q ss_pred             EEecccCceEEEEEEEcCC---CeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKND---GTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~---g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +.||+|+||.||+|.+...   +..||+|++.....   ...+.+|+.++..++|++ |+++++++......++||||+.
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~~~~~~lv~e~~~   79 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPN-VVRLLGVCTEEEPLYLVLEYME   79 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCC-hheeeeeecCCCceEEEEEecc
Confidence            3689999999999999865   89999999876543   467889999999999988 9999999999999999999998


Q ss_pred             CCChHHHhh------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          281 HDRPEVLKK------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~~------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++.+..+..            .+++..+..++.|++.||+|||++||+||||||+||+++ .++.++|+|||.+..
T Consensus        80 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~-~~~~~~l~dfg~~~~  154 (262)
T cd00192          80 GGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVG-EDLVVKISDFGLSRD  154 (262)
T ss_pred             CCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEEC-CCCcEEEcccccccc
Confidence            888766542            368899999999999999999999999999999999999 667899999999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=1.1e-34  Score=322.93  Aligned_cols=144  Identities=22%  Similarity=0.267  Sum_probs=122.9

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcC-----CCeEEEEEeccCcCc---hhHHHHHHHHHHhcC-CCCceEEecceEEeC
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANAS---KHYVSNELRMLERFG-GKNFIIKYEGCFKCG  269 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~-----~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~  269 (728)
                      .-++|.+++.||+|+||.||+|.+..     ++..||||++.....   .+.+.+|+.++.++. |+| |+++++++...
T Consensus        35 ~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~Hpn-Iv~l~~~~~~~  113 (400)
T cd05105          35 PRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLN-IVNLLGACTKS  113 (400)
T ss_pred             cccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCC-eeeEEEEEccC
Confidence            45689999999999999999998743     235799999875332   356889999999996 888 99999999999


Q ss_pred             CeeEEEEeccCCCChHHHhh------------------------------------------------------------
Q 004835          270 DSDCFVLEHVKHDRPEVLKK------------------------------------------------------------  289 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~------------------------------------------------------------  289 (728)
                      ...|+||||+.++.|..++.                                                            
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (400)
T cd05105         114 GPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLE  193 (400)
T ss_pred             CceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhh
Confidence            99999999999887765431                                                            


Q ss_pred             ---------------------------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC
Q 004835          290 ---------------------------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK  330 (728)
Q Consensus       290 ---------------------------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~  330 (728)
                                                             .+++..+..++.||+.||.|||+.+|+||||||+|||++ +
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~-~  272 (400)
T cd05105         194 IKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLA-Q  272 (400)
T ss_pred             hhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEe-C
Confidence                                                   256677888999999999999999999999999999999 6


Q ss_pred             CCceEEEeeecccc
Q 004835          331 AVKGYLIDFNLAMV  344 (728)
Q Consensus       331 ~~~~kL~DFGlA~~  344 (728)
                      +..++|+|||++..
T Consensus       273 ~~~~kL~DfGla~~  286 (400)
T cd05105         273 GKIVKICDFGLARD  286 (400)
T ss_pred             CCEEEEEeCCccee
Confidence            67899999999874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-37  Score=359.04  Aligned_cols=262  Identities=25%  Similarity=0.368  Sum_probs=210.9

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      -+|.-...||.|.||.||.|.+..+|...|+|-+....    .-..+.+|..+|+.++||| ++++|++-.+.+..+|.|
T Consensus      1235 ~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpN-lV~YyGVEvHRekv~IFM 1313 (1509)
T KOG4645|consen 1235 FRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPN-LVRYYGVEVHREKVYIFM 1313 (1509)
T ss_pred             eeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCcc-ccccCceeecHHHHHHHH
Confidence            36778889999999999999999999999999776432    2345778999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          277 EHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       277 E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      |||.+|++..+...   .++...+.+..|++.||+|||++|||||||||+||+++ .++.+|+.|||.|.......    
T Consensus      1314 EyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld-~~g~iK~~DFGsa~ki~~~~---- 1388 (1509)
T KOG4645|consen 1314 EYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLD-FNGLIKYGDFGSAVKIKNNA---- 1388 (1509)
T ss_pred             HHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeee-cCCcEEeecccceeEecCch----
Confidence            99999999887653   67778889999999999999999999999999999999 66689999999997421110    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus      1389 -------------------------------------------------------------------------------- 1388 (1509)
T KOG4645|consen 1389 -------------------------------------------------------------------------------- 1388 (1509)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus      1389 -------------------------------------------------------------------------------- 1388 (1509)
T KOG4645|consen 1389 -------------------------------------------------------------------------------- 1388 (1509)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccC--CCCCchhHHHHHHHHHHHhcCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQ--HQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~--~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                  ....+.....+||+.|||||++.+..  ..+-+.|||||||++.||+||+.|
T Consensus      1389 ----------------------------~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrP 1440 (1509)
T KOG4645|consen 1389 ----------------------------QTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRP 1440 (1509)
T ss_pred             ----------------------------hcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCc
Confidence                                        00001112567999999999997643  226799999999999999999999


Q ss_pred             CCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          592 FFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       592 F~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      |..-+.+  ..||-..|          .                            ...|.+++.++.+..|||.+||.-
T Consensus      1441 W~~~dne--~aIMy~V~----------~----------------------------gh~Pq~P~~ls~~g~dFle~Cl~~ 1480 (1509)
T KOG4645|consen 1441 WAELDNE--WAIMYHVA----------A----------------------------GHKPQIPERLSSEGRDFLEHCLEQ 1480 (1509)
T ss_pred             hhhccch--hHHHhHHh----------c----------------------------cCCCCCchhhhHhHHHHHHHHHhc
Confidence            9653321  11121111          0                            123455667899999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccchhcch
Q 004835          672 NPRLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      ||.+|.+|.|+|.|-|-+...+...
T Consensus      1481 dP~~Rw~~~qlle~~f~~~~~d~~s 1505 (1509)
T KOG4645|consen 1481 DPKMRWTASQLLEHAFGKSCTDEDS 1505 (1509)
T ss_pred             CchhhhHHHHHHHhhccccccccch
Confidence            9999999999999999988766543

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=100.00  E-value=5.5e-35  Score=337.99  Aligned_cols=144  Identities=25%  Similarity=0.260  Sum_probs=105.8

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCC----CeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecce------EEe
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKND----GTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGC------FKC  268 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~----g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~------~~~  268 (728)
                      ..++|.+.+.||+|+||.||+|++..+    +..||||.+......+....|  .+....+.+ +..+...      ...
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e--~l~~~~~~~-~~~~~~~~~~~~~~~~  206 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNE--RVRRACPNS-CADFVYGFLEPVSSKK  206 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHH--HHHhhchhh-HHHHHHhhhccccccc
Confidence            567999999999999999999999988    899999987654332222222  111111221 2222211      234


Q ss_pred             CCeeEEEEeccCCCChHHHhhc--C---------------------ChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCce
Q 004835          269 GDSDCFVLEHVKHDRPEVLKKE--I---------------------DLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNF  325 (728)
Q Consensus       269 ~~~~~LV~E~~~~~~l~~l~~~--l---------------------~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNI  325 (728)
                      +...++||||++++.+..+...  +                     ....+..++.||+.||.|||+++|+||||||+||
T Consensus       207 ~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~NI  286 (566)
T PLN03225        207 EDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQNI  286 (566)
T ss_pred             CCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHHHE
Confidence            5678999999999887665432  1                     1234567999999999999999999999999999


Q ss_pred             EeecCCCceEEEeeeccccc
Q 004835          326 LFSCKAVKGYLIDFNLAMVG  345 (728)
Q Consensus       326 Lld~~~~~~kL~DFGlA~~~  345 (728)
                      ||+.+++.+||+|||+|+..
T Consensus       287 Ll~~~~~~~KL~DFGlA~~l  306 (566)
T PLN03225        287 IFSEGSGSFKIIDLGAAADL  306 (566)
T ss_pred             EEeCCCCcEEEEeCCCcccc
Confidence            99855678999999999753

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.9e-34  Score=297.83  Aligned_cols=141  Identities=21%  Similarity=0.305  Sum_probs=126.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .++|++.+.||.|+||.||+|..  .|+.||+|.+..... ..++.+|+.++..+.|++ |+++++++......|+||||
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~--~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~v~e~   81 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDY--RGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPN-LVQLLGVVLQGNPLYIVTEY   81 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEe--cCcEEEEEEeccchhHHHHHHHHHHHHHhcCCcc-eeeeEEEEcCCCCeEEEEEe
Confidence            46899999999999999999998  489999999876544 567889999999999999 99999999989999999999


Q ss_pred             cCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++.+..+..     .+++..+..++.|++.||.|||++||+||||||+||+++ .++.++|+|||++..
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~-~~~~~~l~d~g~~~~  151 (256)
T cd05039          82 MAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVS-EDLVAKVSDFGLAKE  151 (256)
T ss_pred             cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEe-CCCCEEEcccccccc
Confidence            99888776653     378999999999999999999999999999999999999 667899999999864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=6.8e-35  Score=302.71  Aligned_cols=143  Identities=27%  Similarity=0.356  Sum_probs=126.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +++|.+.+.||.|+||.||+|.+..+++.||||.+....     ....+.+|+.+++.+.|+| |+++++++..++..++
T Consensus         1 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~-i~~~~~~~~~~~~~~~   79 (267)
T cd08229           1 LANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPN-VIKYYASFIEDNELNI   79 (267)
T ss_pred             CchhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCc-hhhhhheeEeCCeEEE
Confidence            367999999999999999999998899999999875421     2346778999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.++.+..+..       .+++..+..++.||+.||.|||++||+|+||||+||+++ .++.++|+|||++..
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~-~~~~~~l~dfg~~~~  155 (267)
T cd08229          80 VLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFIT-ATGVVKLGDLGLGRF  155 (267)
T ss_pred             EEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEc-CCCCEEECcchhhhc
Confidence            999999988876543       278889999999999999999999999999999999998 667899999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-34  Score=297.08  Aligned_cols=134  Identities=27%  Similarity=0.350  Sum_probs=118.9

Q ss_pred             ecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCC
Q 004835          209 EGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       209 LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~  283 (728)
                      ||.|+||.||++.+..+++.||+|++....     ....+.+|+.+++.+.|++ |+++++.+..+...|+||||+.++.
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~v~e~~~~~~   79 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPF-IVKLHYAFQTEEKLYLVLEYAPGGE   79 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCc-HHHHHHHeecCCeeEEEEecCCCCc
Confidence            699999999999998889999999987543     2346788999999999998 9999999999999999999998777


Q ss_pred             hHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          284 PEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       284 l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +..+..   .+++..+..++.|++.||.|||+.+++|+||+|+||+++ ..+.++|+|||++..
T Consensus        80 L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~-~~~~~~l~d~~~~~~  142 (250)
T cd05123          80 LFSHLSKEGRFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENILLD-ADGHIKLTDFGLAKE  142 (250)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEc-CCCcEEEeecCccee
Confidence            765543   378999999999999999999999999999999999999 667899999999864

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=1.4e-34  Score=301.33  Aligned_cols=143  Identities=24%  Similarity=0.324  Sum_probs=126.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCe---EEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGT---VVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~---~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+.|++.+.||+|+||.||+|.+..+++   .||||++....   ....+..|+.++..+.|+| |+++++++..+...+
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~n-i~~~~~~~~~~~~~~   81 (269)
T cd05065           3 VSCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPN-IIHLEGVVTKSRPVM   81 (269)
T ss_pred             hHHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcC-cceEEEEECCCCceE
Confidence            4579999999999999999999876664   69999987532   2356889999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||++++++..+..    .+++..+..++.|++.||.|||++|++||||||+||+++ .+..++|+|||++..
T Consensus        82 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~-~~~~~kl~dfg~~~~  155 (269)
T cd05065          82 IITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVN-SNLVCKVSDFGLSRF  155 (269)
T ss_pred             EEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEEEc-CCCcEEECCCccccc
Confidence            9999999988876653    278899999999999999999999999999999999998 667899999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=3.4e-35  Score=304.81  Aligned_cols=136  Identities=23%  Similarity=0.290  Sum_probs=113.2

Q ss_pred             EEecccCceEEEEEEEcCCCe-------EEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          207 EEEGSGGYGTVYRARRKNDGT-------VVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~-------~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +.||+|+||.||+|.+...+.       .||+|.+....  ..+.+.+|+.+++.+.|+| |+++++++..+...++|||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~-iv~~~~~~~~~~~~~lv~e   79 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKH-LVLNYGVCVCGDESIMVQE   79 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCC-hhheeeEEEeCCCcEEEEe
Confidence            368999999999999865544       48888876432  2345778999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCc-------eEEEeeeccc
Q 004835          278 HVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK-------GYLIDFNLAM  343 (728)
Q Consensus       278 ~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~-------~kL~DFGlA~  343 (728)
                      |+.++++..+..    .+++..++.++.||+.||+|||++||+||||||+|||++.++..       ++++|||++.
T Consensus        80 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~  156 (258)
T cd05078          80 YVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISI  156 (258)
T ss_pred             cCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEeccccccc
Confidence            999998877653    27888999999999999999999999999999999999844322       5677777654

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=1.7e-34  Score=307.14  Aligned_cols=146  Identities=21%  Similarity=0.271  Sum_probs=124.4

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEc-------CCCeEEEEEeccCcC---chhHHHHHHHHHHhc-CCCCceEEecce
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRK-------NDGTVVAIKCPHANA---SKHYVSNELRMLERF-GGKNFIIKYEGC  265 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~-------~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~  265 (728)
                      ....++|.+.+.||+|+||.||+|++.       ..+..||+|.+....   ....+.+|+.++..+ .|+| |++++++
T Consensus        11 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~-i~~~~~~   89 (304)
T cd05101          11 EFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN-IINLLGA   89 (304)
T ss_pred             cccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCC-chheeEE
Confidence            345678999999999999999999753       234589999986532   235678999999999 7888 9999999


Q ss_pred             EEeCCeeEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceE
Q 004835          266 FKCGDSDCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFL  326 (728)
Q Consensus       266 ~~~~~~~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNIL  326 (728)
                      +......|+||||+.++++..+..                   .+++..+..++.||+.||.|||++||+||||||+|||
T Consensus        90 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nil  169 (304)
T cd05101          90 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVL  169 (304)
T ss_pred             EecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEE
Confidence            999999999999999988776542                   2567788999999999999999999999999999999


Q ss_pred             eecCCCceEEEeeecccc
Q 004835          327 FSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       327 ld~~~~~~kL~DFGlA~~  344 (728)
                      ++ +++.++|+|||++..
T Consensus       170 i~-~~~~~kl~D~g~~~~  186 (304)
T cd05101         170 VT-ENNVMKIADFGLARD  186 (304)
T ss_pred             Ec-CCCcEEECCCcccee
Confidence            98 667899999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=1.6e-34  Score=304.71  Aligned_cols=143  Identities=20%  Similarity=0.326  Sum_probs=124.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCC----------------eEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDG----------------TVVAIKCPHANA---SKHYVSNELRMLERFGGKNFII  260 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g----------------~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Iv  260 (728)
                      .++|++.+.||+|+||.||+|.+...+                ..||+|.+....   ....+.+|+.++.++.|++ |+
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~   82 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPN-IA   82 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCC-Ee
Confidence            358999999999999999999876533                568999987543   2456788999999999999 99


Q ss_pred             EecceEEeCCeeEEEEeccCCCChHHHhh--------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceE
Q 004835          261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKK--------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFL  326 (728)
Q Consensus       261 kl~~~~~~~~~~~LV~E~~~~~~l~~l~~--------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNIL  326 (728)
                      ++++++..+...++||||+.++.+..+..              .+++..++.++.|++.||+|||++||+||||||+||+
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nil  162 (296)
T cd05051          83 RLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCL  162 (296)
T ss_pred             EEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhcee
Confidence            99999999999999999999888776542              3678899999999999999999999999999999999


Q ss_pred             eecCCCceEEEeeecccc
Q 004835          327 FSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       327 ld~~~~~~kL~DFGlA~~  344 (728)
                      ++ +.+.++|+|||++..
T Consensus       163 i~-~~~~~~l~dfg~~~~  179 (296)
T cd05051         163 VG-KNYTIKIADFGMSRN  179 (296)
T ss_pred             ec-CCCceEEccccceee
Confidence            99 667899999999864

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=2.8e-34  Score=298.65  Aligned_cols=143  Identities=23%  Similarity=0.297  Sum_probs=125.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCe---EEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGT---VVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~---~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .++|+..+.||+|+||.||+|+...++.   .+|+|.+....   ....+.+|+.++.++.|++ |+++.+++...+..|
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~   82 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHN-IIRLEGVVTKFKPAM   82 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCC-eeEEEEEEccCCCcE
Confidence            3578999999999999999999876554   79999986542   2345788999999999998 999999999999999


Q ss_pred             EEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||++++++..+..    .+++..+..++.|++.||.|||+.||+||||||+||+++ +++.++|+|||++..
T Consensus        83 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~-~~~~~kl~dfg~~~~  156 (268)
T cd05063          83 IITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVN-SNLECKVSDFGLSRV  156 (268)
T ss_pred             EEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEc-CCCcEEECCCcccee
Confidence            9999999998876653    378899999999999999999999999999999999999 667899999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=7e-35  Score=311.44  Aligned_cols=141  Identities=30%  Similarity=0.440  Sum_probs=122.1

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .|...+.||+|+||.||+|++..++..||+|.+...     .....+.+|+.+++.++|++ ++++++++......|+||
T Consensus        16 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~   94 (308)
T cd06634          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN-TIQYRGCYLREHTAWLVM   94 (308)
T ss_pred             HHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCC-cccEEEEEEcCCeeEEEE
Confidence            577888999999999999999989999999987632     12235678999999999998 999999999999999999


Q ss_pred             eccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.+.+...+.   ..+++..+..++.|++.||.|||+.+++||||||+|||++ .++.++|+|||++..
T Consensus        95 e~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~-~~~~~kl~dfg~~~~  164 (308)
T cd06634          95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLS-EPGLVKLGDFGSASI  164 (308)
T ss_pred             EccCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEEC-CCCcEEECCccccee
Confidence            999876554443   2378899999999999999999999999999999999998 667899999998753

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=2.2e-34  Score=308.17  Aligned_cols=144  Identities=22%  Similarity=0.307  Sum_probs=123.1

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEc-------CCCeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecceEE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRK-------NDGTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGCFK  267 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~-------~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~  267 (728)
                      ..++|.+.+.||+|+||.||+|...       .....||+|++.....   ...+.+|+.++..+ .|++ |+++++++.
T Consensus        10 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~-iv~~~~~~~   88 (314)
T cd05099          10 PRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKN-IINLLGVCT   88 (314)
T ss_pred             cHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCC-eeeEEEEEc
Confidence            3468999999999999999999863       2346799999875432   34577899999999 5887 999999999


Q ss_pred             eCCeeEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS  328 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld  328 (728)
                      .....|+||||+.++++..+..                   .+++..+..++.||+.||.|||++||+||||||+|||++
T Consensus        89 ~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~  168 (314)
T cd05099          89 QEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVT  168 (314)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEEc
Confidence            8899999999999988876542                   267788899999999999999999999999999999998


Q ss_pred             cCCCceEEEeeecccc
Q 004835          329 CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       329 ~~~~~~kL~DFGlA~~  344 (728)
                       +++.+||+|||+++.
T Consensus       169 -~~~~~kL~Dfg~~~~  183 (314)
T cd05099         169 -EDNVMKIADFGLARG  183 (314)
T ss_pred             -CCCcEEEcccccccc
Confidence             667899999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=1.8e-34  Score=303.40  Aligned_cols=142  Identities=19%  Similarity=0.214  Sum_probs=120.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCe----EEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGT----VVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~----~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .++|++.+.||+|+||+||+|.+..+++    .|++|.+.....   ...+..|+.++.++.|+| |+++++++. +...
T Consensus         6 ~~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~-iv~~~~~~~-~~~~   83 (279)
T cd05111           6 ETELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAY-IVRLLGICP-GASL   83 (279)
T ss_pred             HhhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCC-cceEEEEEC-CCcc
Confidence            3579999999999999999999987776    477787754322   245667888899999999 999999875 5567


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++|+||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||+++.
T Consensus        84 ~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~-~~~~~kl~Dfg~~~~  158 (279)
T cd05111          84 QLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLK-SDSIVQIADFGVADL  158 (279)
T ss_pred             EEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEc-CCCcEEEcCCcccee
Confidence            89999999888776653    378899999999999999999999999999999999998 677899999999874

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=2e-34  Score=298.63  Aligned_cols=134  Identities=21%  Similarity=0.287  Sum_probs=115.4

Q ss_pred             EecccCceEEEEEEE--cCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCC
Q 004835          208 EEGSGGYGTVYRARR--KNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH  281 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~--~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~  281 (728)
                      .||+|+||.||+|.+  ..++..||+|++.....    ...+.+|+.++..+.|++ |+++++++. .+..++||||+++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~-~~~~~lv~e~~~~   79 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPY-IVRMIGICE-AESWMLVMELAEL   79 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCC-cceEEEEEc-CCCcEEEEecCCC
Confidence            589999999999965  45678999999864432    346788999999999999 999998875 5677999999999


Q ss_pred             CChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          282 DRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       282 ~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.+..+..   .+++..+..++.|++.||+|||++||+||||||.|||++ +++.++|+|||++..
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~-~~~~~kl~Dfg~~~~  144 (257)
T cd05116          80 GPLNKFLQKNKHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVLLV-TQHYAKISDFGLSKA  144 (257)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEc-CCCeEEECCCccccc
Confidence            88766553   388999999999999999999999999999999999999 667899999999864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=2.2e-34  Score=299.93  Aligned_cols=143  Identities=25%  Similarity=0.323  Sum_probs=125.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCC---eEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDG---TVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g---~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .++|++.+.||+|+||.||+|.+..++   ..+|+|.+....   ....+.+|+.++.+++|+| |+++++++..++..|
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~   81 (267)
T cd05066           3 ASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPN-IIHLEGVVTKSKPVM   81 (267)
T ss_pred             HHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCC-cceEEEEEecCCccE
Confidence            458999999999999999999986544   379999886532   2346788999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||++++++..+..    .+++.++..++.|++.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        82 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~-~~~~~~l~dfg~~~~  155 (267)
T cd05066          82 IVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVN-SNLVCKVSDFGLSRV  155 (267)
T ss_pred             EEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEEC-CCCeEEeCCCCcccc
Confidence            9999999988876653    378889999999999999999999999999999999998 667899999999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.5e-34  Score=301.50  Aligned_cols=136  Identities=18%  Similarity=0.158  Sum_probs=113.3

Q ss_pred             EEecccCceEEEEEEEcCC------------CeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          207 EEEGSGGYGTVYRARRKND------------GTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~------------g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      +.||+|+||.||+|.....            ...||+|++....  ....+.+|+.++..+.|+| |+++++++......
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~-iv~~~~~~~~~~~~   79 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKH-IVLLYGVCVRDVEN   79 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCC-EeeEEEEEecCCCC
Confidence            3689999999999986422            2368999876432  2345678899999999999 99999999988899


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC------ceEEEeeecc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV------KGYLIDFNLA  342 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~------~~kL~DFGlA  342 (728)
                      ++||||++++.+..+..    .+++..+..++.||+.||+|||++||+||||||+|||++.++.      .++++|||++
T Consensus        80 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~  159 (262)
T cd05077          80 IMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIP  159 (262)
T ss_pred             EEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCC
Confidence            99999999998877653    2788999999999999999999999999999999999984332      2788888887


Q ss_pred             c
Q 004835          343 M  343 (728)
Q Consensus       343 ~  343 (728)
                      .
T Consensus       160 ~  160 (262)
T cd05077         160 I  160 (262)
T ss_pred             c
Confidence            5

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=2.1e-34  Score=303.37  Aligned_cols=143  Identities=22%  Similarity=0.330  Sum_probs=124.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcC-----CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~-----~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      .++|++.+.||+|+||.||+|.+..     ++..||+|++.....   ...+.+|+.++.++.|++ |+++++++..+..
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~-iv~~~~~~~~~~~   82 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPN-IVKLLGVCAVGKP   82 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCc-hheEEEEEcCCCc
Confidence            4689999999999999999998743     578999999875432   355788999999999998 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh-------------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceE
Q 004835          272 DCFVLEHVKHDRPEVLKK-------------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFL  326 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~-------------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNIL  326 (728)
                      .|+||||++++.+..+..                         .+++..++.++.||+.||.|||+++++||||||+|||
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil  162 (288)
T cd05050          83 MCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCL  162 (288)
T ss_pred             cEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhheE
Confidence            999999999988766643                         2567788999999999999999999999999999999


Q ss_pred             eecCCCceEEEeeecccc
Q 004835          327 FSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       327 ld~~~~~~kL~DFGlA~~  344 (728)
                      ++ +.+.++|+|||++..
T Consensus       163 ~~-~~~~~~l~dfg~~~~  179 (288)
T cd05050         163 VG-ENMVVKIADFGLSRN  179 (288)
T ss_pred             ec-CCCceEECcccccee
Confidence            98 667799999999863

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=1.6e-34  Score=298.43  Aligned_cols=141  Identities=22%  Similarity=0.338  Sum_probs=123.8

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .+++|++.+.||+|+||.||+|..  +++.||+|.+........+.+|+.++.+++|++ |+++++++.. +..++||||
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~--~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~~~~-i~~~~~~~~~-~~~~~v~e~   79 (254)
T cd05083           4 NLQKLTLGEIIGEGEFGAVLQGEY--TGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKN-LVRLLGVILH-NGLYIVMEL   79 (254)
T ss_pred             cHHHceeeeeeccCCCCceEeccc--CCCceEEEeecCcchHHHHHHHHHHHHhCCCCC-cCeEEEEEcC-CCcEEEEEC
Confidence            456899999999999999999975  688999999876666677889999999999999 8999988865 457999999


Q ss_pred             cCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.++.+..+..     .+++..+..++.|++.||.|||+.|++||||||+||+++ .++.++|+|||++..
T Consensus        80 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~-~~~~~kl~Dfg~~~~  149 (254)
T cd05083          80 MSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVS-EDGVAKVSDFGLARV  149 (254)
T ss_pred             CCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEc-CCCcEEECCCcccee
Confidence            99888776653     267888999999999999999999999999999999998 667899999999863

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=1.4e-34  Score=304.14  Aligned_cols=143  Identities=20%  Similarity=0.326  Sum_probs=124.0

Q ss_pred             CCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+|.+.++||+|+||.||+|...     .++..+|+|.+....  ....+.+|+.++..+.|+| |+++++++..+...
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~   82 (280)
T cd05092           4 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQH-IVRFYGVCTEGRPL   82 (280)
T ss_pred             hHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCC-CceEEEEEecCCce
Confidence            357889999999999999999753     346789999876432  2456889999999999998 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCce
Q 004835          273 CFVLEHVKHDRPEVLKK------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKG  334 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~  334 (728)
                      |+||||+.++.+..+..                  .+++..+..++.||+.||+|||++||+||||||+|||++ +++.+
T Consensus        83 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~-~~~~~  161 (280)
T cd05092          83 LMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVG-QGLVV  161 (280)
T ss_pred             EEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEc-CCCCE
Confidence            99999999988876542                  267888999999999999999999999999999999998 67789


Q ss_pred             EEEeeecccc
Q 004835          335 YLIDFNLAMV  344 (728)
Q Consensus       335 kL~DFGlA~~  344 (728)
                      +|+|||++..
T Consensus       162 kL~dfg~~~~  171 (280)
T cd05092         162 KIGDFGMSRD  171 (280)
T ss_pred             EECCCCceeE
Confidence            9999999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=3.8e-34  Score=295.24  Aligned_cols=142  Identities=19%  Similarity=0.271  Sum_probs=125.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ..+|++.+.||.|+||.||+|.+. ++..+|+|.+... .....+.+|+.+++++.|++ |+++++++......|+||||
T Consensus         3 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd05112           3 PSELTLVQEIGSGQFGLVWLGYWL-EKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPK-LVQLYGVCTERSPICLVFEF   80 (256)
T ss_pred             hhHeEEEeeecCcccceEEEEEEe-CCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCC-eeeEEEEEccCCceEEEEEc
Confidence            458999999999999999999885 4778999988754 33456889999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.++.+..+..    .+++..+..++.|++.||+|||+.+|+||||||+||+++ .++.++|+|||++..
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~-~~~~~~l~d~g~~~~  149 (256)
T cd05112          81 MEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVG-ENQVVKVSDFGMTRF  149 (256)
T ss_pred             CCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEEEc-CCCeEEECCCcceee
Confidence            99988876653    278889999999999999999999999999999999998 667899999999864

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-35  Score=300.94  Aligned_cols=151  Identities=22%  Similarity=0.318  Sum_probs=128.2

Q ss_pred             cccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCch---hHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          194 AKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK---HYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       194 ~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~---~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      +....++++.+++..||.|+.|+||+++.+.+|...|||.+......   +++...+.++...+..++||+.+++|..+.
T Consensus        85 ~r~~~dindl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~  164 (391)
T KOG0983|consen   85 QRYQADINDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNT  164 (391)
T ss_pred             cccccChHHhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCc
Confidence            34455677889999999999999999999999999999999876543   456677788777766788999999999999


Q ss_pred             eeEEEEeccCC---CChHHHhhcCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeeccccc
Q 004835          271 SDCFVLEHVKH---DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVG  345 (728)
Q Consensus       271 ~~~LV~E~~~~---~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~  345 (728)
                      ..++.||.|..   .++..+.+.+++..+-.+...++.||.||-.+ ||||||+||+||||| +.+++||||||++..+
T Consensus       165 dV~IcMelMs~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlD-e~GniKlCDFGIsGrl  242 (391)
T KOG0983|consen  165 DVFICMELMSTCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLD-ERGNIKLCDFGISGRL  242 (391)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceEEc-cCCCEEeeccccccee
Confidence            99999998764   34444455688888899999999999999864 899999999999999 7778999999999753

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-35  Score=295.76  Aligned_cols=147  Identities=21%  Similarity=0.281  Sum_probs=126.2

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC--cCchhHHHHHHHHHHhcCCCCceEEecceEEeC----
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA--NASKHYVSNELRMLERFGGKNFIIKYEGCFKCG----  269 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~--~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~----  269 (728)
                      +..+-++|.|.+.||+|||+-||+++...+++.||+|++.-  ....+...+|+...++++|+| +++++++...+    
T Consensus        16 v~In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~-vl~l~dh~l~~~~D~   94 (302)
T KOG2345|consen   16 VIINNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPN-VLRLVDHQLREEKDG   94 (302)
T ss_pred             EEEcCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcc-hHHHHHHHHHhhccC
Confidence            34456799999999999999999999999999999998753  345667889999999999988 88888776433    


Q ss_pred             -CeeEEEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCC--cEeccCCCCceEeecCCCceEEEee
Q 004835          270 -DSDCFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQG--IVHRDVKPGNFLFSCKAVKGYLIDF  339 (728)
Q Consensus       270 -~~~~LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~g--IIHRDIKPeNILld~~~~~~kL~DF  339 (728)
                       ...||+++|+..|++...+.       .+++.++++|+.+|++||.+||+..  ..||||||.|||+. +.+.++|.||
T Consensus        95 ~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls-~~~~~vl~D~  173 (302)
T KOG2345|consen   95 KHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLS-DSGLPVLMDL  173 (302)
T ss_pred             ceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEec-CCCceEEEec
Confidence             34899999999886654432       2899999999999999999999998  99999999999998 6778999999


Q ss_pred             ecccc
Q 004835          340 NLAMV  344 (728)
Q Consensus       340 GlA~~  344 (728)
                      |.+..
T Consensus       174 GS~~~  178 (302)
T KOG2345|consen  174 GSATQ  178 (302)
T ss_pred             cCccc
Confidence            99864

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=3.9e-34  Score=297.37  Aligned_cols=134  Identities=22%  Similarity=0.288  Sum_probs=115.5

Q ss_pred             EecccCceEEEEEEEc--CCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCC
Q 004835          208 EEGSGGYGTVYRARRK--NDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHD  282 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~--~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~  282 (728)
                      .||+|+||.||+|.+.  .++..||+|++.....   .+.+.+|+.+++++.|++ |+++++++. ....++||||++++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~-ii~~~~~~~-~~~~~lv~e~~~~~   79 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPY-IVRMIGVCE-AEALMLVMEMASGG   79 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCC-eEEEEEEEc-CCCeEEEEEeCCCC
Confidence            4899999999999875  4456799999875432   345789999999999999 999999875 45789999999998


Q ss_pred             ChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          283 RPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       283 ~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++..+..    .+++..++.++.||+.||.|||++||+||||||+|||++ .+..++|+|||++..
T Consensus        80 ~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~-~~~~~kl~dfg~~~~  144 (257)
T cd05115          80 PLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLV-NQHYAKISDFGLSKA  144 (257)
T ss_pred             CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEEEc-CCCcEEeccCCcccc
Confidence            8876653    388999999999999999999999999999999999998 667899999999864

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=3.2e-34  Score=305.78  Aligned_cols=143  Identities=21%  Similarity=0.309  Sum_probs=124.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEE-----cCCCeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecceEEeCC
Q 004835          200 FESFIVEEEEGSGGYGTVYRARR-----KNDGTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~-----~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~  270 (728)
                      .++|.+.+.||+|+||.||+|.+     ..++..||+|++.....   .+.+.+|+.+++++ +|+| |+++++++...+
T Consensus        34 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~-iv~~~~~~~~~~  112 (302)
T cd05055          34 RNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHEN-IVNLLGACTIGG  112 (302)
T ss_pred             HHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCC-cceEEEEEecCC
Confidence            45899999999999999999975     23456899998875432   34578899999999 6888 999999999999


Q ss_pred             eeEEEEeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          271 SDCFVLEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..|+||||+.++++..+...     +++.++..++.||+.||.|||+++|+|+||||+|||++ ++..++|+|||++..
T Consensus       113 ~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~-~~~~~~l~dfg~~~~  190 (302)
T cd05055         113 PILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLT-HGKIVKICDFGLARD  190 (302)
T ss_pred             ceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEc-CCCeEEECCCccccc
Confidence            99999999998887766532     78899999999999999999999999999999999998 677899999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.5e-34  Score=303.93  Aligned_cols=135  Identities=18%  Similarity=0.186  Sum_probs=112.6

Q ss_pred             EecccCceEEEEEEEcCC------------------------CeEEEEEeccCcCc--hhHHHHHHHHHHhcCCCCceEE
Q 004835          208 EEGSGGYGTVYRARRKND------------------------GTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIK  261 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~~------------------------g~~VAIK~i~~~~~--~~~~~~Ei~iL~~L~h~n~Ivk  261 (728)
                      .||+|+||.||+|....+                        ...||+|++.....  ...+.+|+.+++.++|+| |++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~n-iv~   80 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIH-LAF   80 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCC-eee
Confidence            589999999999985322                        24689998864322  345678899999999999 999


Q ss_pred             ecceEEeCCeeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC------
Q 004835          262 YEGCFKCGDSDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA------  331 (728)
Q Consensus       262 l~~~~~~~~~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~------  331 (728)
                      +++++......|+||||++++.+..+..    .+++..+..++.||+.||+|||++||+||||||+|||++..+      
T Consensus        81 ~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~  160 (274)
T cd05076          81 VHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTS  160 (274)
T ss_pred             EEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCcc
Confidence            9999999999999999999999877653    378899999999999999999999999999999999997332      


Q ss_pred             CceEEEeeeccc
Q 004835          332 VKGYLIDFNLAM  343 (728)
Q Consensus       332 ~~~kL~DFGlA~  343 (728)
                      ..++++|||++.
T Consensus       161 ~~~kl~d~g~~~  172 (274)
T cd05076         161 PFIKLSDPGVSF  172 (274)
T ss_pred             ceeeecCCcccc
Confidence            236888888764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=100.00  E-value=9.7e-36  Score=308.16  Aligned_cols=281  Identities=26%  Similarity=0.358  Sum_probs=221.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCC------
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD------  270 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~------  270 (728)
                      .+|.-...+|.|.- .|..+.+.-.++.||+|.+...    ....+..+|..++..+.|+| |++++.+|....      
T Consensus        17 ~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~n-ii~l~n~ftP~~~l~~~~   94 (369)
T KOG0665|consen   17 KRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKN-IISLLNVFTPQKTLEEFQ   94 (369)
T ss_pred             eeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccc-eeeeeeccCccccHHHHH
Confidence            47888889999998 8888888888999999987532    33456789999999999999 999999987543      


Q ss_pred             eeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          271 SDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      ..|+|||++...+-..+.-.++-..+..|++|++.|+.|||+.||+||||||+||++. ....+||.|||+|+....   
T Consensus        95 e~y~v~e~m~~nl~~vi~~elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~-~~~~lKi~dfg~ar~e~~---  170 (369)
T KOG0665|consen   95 EVYLVMELMDANLCQVILMELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVN-SDCTLKILDFGLARTEDT---  170 (369)
T ss_pred             hHHHHHHhhhhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceec-chhheeeccchhhcccCc---
Confidence            5799999999988877777788999999999999999999999999999999999998 667799999999974100   


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (369)
T KOG0665|consen  171 --------------------------------------------------------------------------------  170 (369)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (369)
T KOG0665|consen  171 --------------------------------------------------------------------------------  170 (369)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                        .-..++.+.|..|+|||++++.. |...+||||+|||+.||++|..
T Consensus       171 ----------------------------------~~~mtpyVvtRyyrapevil~~~-~ke~vdiwSvGci~gEli~~~V  215 (369)
T KOG0665|consen  171 ----------------------------------DFMMTPYVVTRYYRAPEVILGMG-YKENVDIWSVGCIMGELILGTV  215 (369)
T ss_pred             ----------------------------------ccccCchhheeeccCchheeccC-CcccchhhhhhhHHHHHhhceE
Confidence                                              01234778999999999999888 7999999999999999999999


Q ss_pred             CCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcc----h--hhcccCCCCCCchhhhhhhccCCcccccCchhHHH
Q 004835          591 PFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPE----D--LYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD  663 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d  663 (728)
                      .|.|.+. ++..++++.+|++...-+.++...-..|..    .  ......+|...+..-       .+.....+..+.|
T Consensus       216 lf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~-------~e~~~~~~~~ard  288 (369)
T KOG0665|consen  216 LFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVV-------LEGSKLDCSLARD  288 (369)
T ss_pred             EecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCccccccc-------ccCCccchHHHHH
Confidence            9998766 789999999999766555444332211111    0  000111111111110       1122234567899


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCc
Q 004835          664 LVDKCLTVNPRLRISAEDALKHEFFA  689 (728)
Q Consensus       664 Li~~~L~~dP~~Rpta~e~L~Hp~f~  689 (728)
                      |+.+||..||++|++++++|+||||+
T Consensus       289 ll~~MLvi~pe~Risv~daL~HPY~~  314 (369)
T KOG0665|consen  289 LLSKMLVIDPEKRISVDDALRHPYIK  314 (369)
T ss_pred             HHHHhhccChhhcccHHHHhcCCeee
Confidence            99999999999999999999999997

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=3.4e-34  Score=309.60  Aligned_cols=144  Identities=22%  Similarity=0.266  Sum_probs=122.7

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCC-------CeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecceEE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKND-------GTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGCFK  267 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~-------g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~  267 (728)
                      ...+|.+.+.||+|+||.||+|++...       +..||+|.+.....   ...+.+|+.++.++ .|+| |+++++++.
T Consensus        10 ~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~-iv~~~~~~~   88 (334)
T cd05100          10 SRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKN-IINLLGACT   88 (334)
T ss_pred             CHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCC-eeeeeEEEc
Confidence            345799999999999999999986432       24799998875432   34678899999999 6888 999999999


Q ss_pred             eCCeeEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS  328 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld  328 (728)
                      ..+..|+||||++++.+..+..                   .+++..+..++.||+.||+|||++||+||||||+|||++
T Consensus        89 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~  168 (334)
T cd05100          89 QDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVT  168 (334)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEc
Confidence            9999999999999988776542                   256778889999999999999999999999999999998


Q ss_pred             cCCCceEEEeeecccc
Q 004835          329 CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       329 ~~~~~~kL~DFGlA~~  344 (728)
                       .++.++|+|||+++.
T Consensus       169 -~~~~~kL~Dfg~~~~  183 (334)
T cd05100         169 -EDNVMKIADFGLARD  183 (334)
T ss_pred             -CCCcEEECCccccee
Confidence             667899999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=4.6e-34  Score=293.35  Aligned_cols=140  Identities=22%  Similarity=0.334  Sum_probs=124.3

Q ss_pred             eeEEEEecccCceEEEEEEEcCCC----eEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDG----TVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g----~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      +++.+.||.|+||.||+|.+...+    ..||+|++....   ....+..|+.++..++|++ |+++++++...+..|++
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~i   79 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPN-IVKLLGVCTEEEPLMIV   79 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCc-hheEEEEEcCCCeeEEE
Confidence            457789999999999999998766    899999987554   3457889999999999988 99999999999999999


Q ss_pred             EeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++.+..+...     +++..+..++.||+.||+|||+.|++||||||+||+++ +++.++|+|||++..
T Consensus        80 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~-~~~~~~l~dfg~~~~  152 (258)
T smart00219       80 MEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCLVG-ENLVVKISDFGLSRD  152 (258)
T ss_pred             EeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEEEc-cCCeEEEcccCCcee
Confidence            999999887765431     88999999999999999999999999999999999999 666899999999875

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=2.7e-34  Score=300.04  Aligned_cols=134  Identities=25%  Similarity=0.344  Sum_probs=115.9

Q ss_pred             EecccCceEEEEEEEcCCCe--EEEEEeccCcC---chhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEeccCC
Q 004835          208 EEGSGGYGTVYRARRKNDGT--VVAIKCPHANA---SKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLEHVKH  281 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~~g~--~VAIK~i~~~~---~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E~~~~  281 (728)
                      .||+|+||.||+|++..++.  .+|+|.+....   ....+.+|+.++.++ .|++ |+++++++......|+||||+.+
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~-iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           2 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPN-IINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             cCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCC-eeeEEEEEecCCCceEEEEeCCC
Confidence            68999999999999987775  56888876432   234677899999999 6777 99999999999999999999998


Q ss_pred             CChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecc
Q 004835          282 DRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       282 ~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                      +++..+..                   .+++..+..++.|++.||+|||+.||+||||||+|||++ +++.++|+|||++
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~-~~~~~kl~dfgl~  159 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVG-ENYVAKIADFGLS  159 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEc-CCCeEEECCCCCc
Confidence            88766542                   267889999999999999999999999999999999999 6778999999987


Q ss_pred             c
Q 004835          343 M  343 (728)
Q Consensus       343 ~  343 (728)
                      .
T Consensus       160 ~  160 (270)
T cd05047         160 R  160 (270)
T ss_pred             c
Confidence            5

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.2e-34  Score=294.04  Aligned_cols=143  Identities=21%  Similarity=0.281  Sum_probs=126.7

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ..++|.+.+.||+|+||.||+|.+. ++..||||.+... .....+.+|+.+++++.|++ |+++++++......++|||
T Consensus         4 ~~~~~~i~~~ig~g~~~~v~~~~~~-~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~v~e   81 (261)
T cd05034           4 PRESLKLERKLGAGQFGEVWMGTWN-GTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDK-LVQLYAVCSEEEPIYIVTE   81 (261)
T ss_pred             chhheeeeeeeccCcceEEEEEEEc-CCceEEEEEecCCccCHHHHHHHHHHHhhCCCCC-EeeeeeeeecCCceEEEEe
Confidence            3468999999999999999999975 5678999998754 34567889999999999999 9999999998899999999


Q ss_pred             ccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.++.+..+..     .+++..+..++.||+.||.|||++||+|+||||+||+++ +++.++|+|||++..
T Consensus        82 ~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~-~~~~~~l~d~g~~~~  152 (261)
T cd05034          82 YMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVG-ENLVCKIADFGLARL  152 (261)
T ss_pred             ccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEc-CCCCEEECcccccee
Confidence            999988776652     378899999999999999999999999999999999999 667899999999864

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.7e-34  Score=294.85  Aligned_cols=135  Identities=23%  Similarity=0.295  Sum_probs=116.9

Q ss_pred             EEecccCceEEEEEEEcCCC---eEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKNDG---TVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g---~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      ++||+|+||.||+|.+...+   ..||+|.+.....   ...+.+|+.+++.+.|++ |+++++++. ....++||||+.
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~-~~~~~~v~e~~~   78 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPC-IVRLIGVCK-GEPLMLVMELAP   78 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCC-eeeEEEEEc-CCceEEEEEeCC
Confidence            36899999999999886555   7899999875543   456788999999999998 999998776 567899999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++.+..+..   .+++..+..++.|++.||+|||..+|+||||||+|||++ .++.++|+|||+++.
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~-~~~~~kl~df~~~~~  144 (257)
T cd05060          79 LGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLV-NRHQAKISDFGMSRA  144 (257)
T ss_pred             CCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEc-CCCcEEeccccccce
Confidence            888776553   388999999999999999999999999999999999999 667899999999864

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=7.7e-34  Score=291.94  Aligned_cols=135  Identities=25%  Similarity=0.322  Sum_probs=118.4

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~  283 (728)
                      ++||+|+||.||+|... ++..||+|.+.....   ...+.+|+.++..+.|+| |+++++++......++||||++++.
T Consensus         1 ~~ig~g~~g~vy~~~~~-~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~~~~~~   78 (250)
T cd05085           1 ELLGKGNFGEVFKGTLK-DKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPN-IVKLIGVCTQRQPIYIVMELVPGGD   78 (250)
T ss_pred             CccCCCCCceEEEEEec-CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCC-cCeEEEEEecCCccEEEEECCCCCc
Confidence            36899999999999864 688999999875432   335778999999999999 9999999999999999999999988


Q ss_pred             hHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          284 PEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       284 l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +..+..    .+++..+..++.|++.||.|||++|++||||||+||+++ .++.++|+|||++..
T Consensus        79 L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~-~~~~~~l~d~g~~~~  142 (250)
T cd05085          79 FLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVG-ENNVLKISDFGMSRQ  142 (250)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEc-CCCeEEECCCcccee
Confidence            876643    278899999999999999999999999999999999998 667899999999864

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.3e-35  Score=327.48  Aligned_cols=141  Identities=23%  Similarity=0.349  Sum_probs=124.3

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEecc------CcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCe--eEE
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH------ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS--DCF  274 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~------~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~--~~L  274 (728)
                      .+...+||+|+|-+||+|.+..+|-.||--.++      .....+++..|+.+|+.|+|+| |+++|+++.+...  +.+
T Consensus        42 ~k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~N-Iirfy~SW~d~~n~~in~  120 (632)
T KOG0584|consen   42 LKFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPN-IIRFYDSWVDTDNKTINF  120 (632)
T ss_pred             eehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCc-eeeeeeheecCCCceeee
Confidence            355679999999999999999999888865433      3344578999999999999999 9999999987665  788


Q ss_pred             EEeccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhC--CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQ--GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~--gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+|.+..|+|..+.++   ++...++.|++||++||.|||++  .|||||||-+||+|+...+.+||.|+|||.+
T Consensus       121 iTEL~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl  195 (632)
T KOG0584|consen  121 ITELFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATL  195 (632)
T ss_pred             eeecccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHH
Confidence            9999999999888754   88899999999999999999998  5999999999999998889999999999986

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-35  Score=326.37  Aligned_cols=145  Identities=24%  Similarity=0.330  Sum_probs=127.9

Q ss_pred             cccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeC
Q 004835          194 AKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       194 ~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      ..+..-.+...+...||+|.||+||+|+|-   -.||||++...    ...+.|.+|+.+|++-+|.| |+.+.|++..+
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh---GdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~N-IlLFMG~~~~p  460 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWH---GDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHEN-ILLFMGACMNP  460 (678)
T ss_pred             cccccCHHHhhccceeccccccceeecccc---cceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhh-heeeehhhcCC
Confidence            455556678899999999999999999994   36999998743    34567899999999999999 99999999877


Q ss_pred             CeeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          270 DSDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .. .||.-+|+|.+|..+++    +|.......|++||++|+.|||.++|||||||..||++. +++++||.|||++..
T Consensus       461 ~~-AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~-~~~kVkIgDFGLatv  537 (678)
T KOG0193|consen  461 PL-AIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLH-EDLKVKIGDFGLATV  537 (678)
T ss_pred             ce-eeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEc-cCCcEEEecccceee
Confidence            77 99999999999887764    488899999999999999999999999999999999999 668999999999965

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.3e-34  Score=304.83  Aligned_cols=142  Identities=20%  Similarity=0.346  Sum_probs=122.9

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCC--------------CeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKND--------------GTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYE  263 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~--------------g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~  263 (728)
                      .+|++.+.||+|+||.||+|++..+              ...||+|.++....   ...+.+|++++.+++|++ |++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~-i~~~~   83 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPN-IIRLL   83 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCC-cCeEE
Confidence            4899999999999999999987543              23599999875422   346789999999999998 99999


Q ss_pred             ceEEeCCeeEEEEeccCCCChHHHhh---------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee
Q 004835          264 GCFKCGDSDCFVLEHVKHDRPEVLKK---------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS  328 (728)
Q Consensus       264 ~~~~~~~~~~LV~E~~~~~~l~~l~~---------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld  328 (728)
                      +++......|+||||+.++++..+..               .+++..+..++.|++.||+|||++||+||||||+|||++
T Consensus        84 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~  163 (295)
T cd05097          84 GVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVG  163 (295)
T ss_pred             EEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEEc
Confidence            99999999999999999988876542               256788899999999999999999999999999999998


Q ss_pred             cCCCceEEEeeecccc
Q 004835          329 CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       329 ~~~~~~kL~DFGlA~~  344 (728)
                       +++.+||+|||++..
T Consensus       164 -~~~~~kl~dfg~~~~  178 (295)
T cd05097         164 -NHYTIKIADFGMSRN  178 (295)
T ss_pred             -CCCcEEecccccccc
Confidence             667799999999864

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=6.9e-34  Score=297.92  Aligned_cols=144  Identities=15%  Similarity=0.227  Sum_probs=123.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcC----CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEe-CC
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKN----DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKC-GD  270 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~----~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~-~~  270 (728)
                      ..++|++.+.||+|+||.||+|.+..    ++..||+|.+.....   ...+.+|+.+++++.|+| |+++++++.. +.
T Consensus         4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~n-i~~~~~~~~~~~~   82 (280)
T cd05043           4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQN-ILPILHVCIEDGE   82 (280)
T ss_pred             chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEecCCC
Confidence            45689999999999999999999875    368899998875432   345778999999999999 8888887654 57


Q ss_pred             eeEEEEeccCCCChHHHhh-----------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEee
Q 004835          271 SDCFVLEHVKHDRPEVLKK-----------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDF  339 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~-----------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DF  339 (728)
                      ..++++||+.++++..+..           .+++..+..++.||+.||+|||+++|+||||||+||+++ +.+.+||+||
T Consensus        83 ~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~-~~~~~kl~d~  161 (280)
T cd05043          83 PPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVID-EELQVKITDN  161 (280)
T ss_pred             CCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEc-CCCcEEECCC
Confidence            7899999999888776542           267889999999999999999999999999999999998 6678999999


Q ss_pred             ecccc
Q 004835          340 NLAMV  344 (728)
Q Consensus       340 GlA~~  344 (728)
                      |+++.
T Consensus       162 g~~~~  166 (280)
T cd05043         162 ALSRD  166 (280)
T ss_pred             CCccc
Confidence            99874

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=1.2e-33  Score=293.29  Aligned_cols=142  Identities=22%  Similarity=0.308  Sum_probs=122.8

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ..++|.+.+.||+|+||.||+|.+. .+..||+|.+.... ....+.+|+.+++.++|++ |+++++++.. ...++|||
T Consensus         4 ~~~~~~~~~~lg~g~~~~vy~~~~~-~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~-~~~~~v~e   80 (260)
T cd05073           4 PRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDK-LVKLHAVVTK-EPIYIITE   80 (260)
T ss_pred             cccceeEEeEecCccceEEEEEEec-CCccEEEEecCCChhHHHHHHHHHHHHHhcCCCC-cceEEEEEcC-CCeEEEEE
Confidence            3468999999999999999999864 56679999887543 3456889999999999998 9999888877 78899999


Q ss_pred             ccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++++.+..+..     .+++..+..++.||+.||.|||+.|++||||||+||+++ ..+.++|+|||++..
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~-~~~~~~l~d~~~~~~  151 (260)
T cd05073          81 FMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVS-ASLVCKIADFGLARV  151 (260)
T ss_pred             eCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEc-CCCcEEECCCcceee
Confidence            999887766543     267888999999999999999999999999999999998 677899999999864

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-36  Score=305.98  Aligned_cols=279  Identities=24%  Similarity=0.345  Sum_probs=212.5

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCC-----eeEEEE
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD-----SDCFVL  276 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~-----~~~LV~  276 (728)
                      .+.||.|+||.||.+.+..+|+.||+|++..-    ...+++.+|+.+|..++|.| ++..++..+...     .+|+|.
T Consensus        58 DRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdN-VLSaLDILQPph~dfFqEiYV~T  136 (449)
T KOG0664|consen   58 DRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDN-VLSLLDILQPANPSFFQELYVLT  136 (449)
T ss_pred             CCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhcccc-HHHHHHhcCCCCchHHHHHHHHH
Confidence            46899999999999999999999999987532    34567889999999999999 877777766443     467888


Q ss_pred             eccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcccc
Q 004835          277 EHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQAT  354 (728)
Q Consensus       277 E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~  354 (728)
                      |.+..++...+..  .++.+.++-+++||++||.|||+.+|+||||||.|+|++ .+..+||||||+|+......     
T Consensus       137 ELmQSDLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVN-SNCvLKICDFGLARvee~d~-----  210 (449)
T KOG0664|consen  137 ELMQSDLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVN-SNCILKICDFGLARTWDQRD-----  210 (449)
T ss_pred             HHHHhhhhheeccCCCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEec-cCceEEecccccccccchhh-----
Confidence            8888776655543  388899999999999999999999999999999999999 67789999999998622110     


Q ss_pred             CCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCC
Q 004835          355 LPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRT  434 (728)
Q Consensus       355 ~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (728)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (449)
T KOG0664|consen  211 --------------------------------------------------------------------------------  210 (449)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCC
Q 004835          435 PAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPS  514 (728)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (728)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (449)
T KOG0664|consen  211 --------------------------------------------------------------------------------  210 (449)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 004835          515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG  594 (728)
Q Consensus       515 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~  594 (728)
                                                    ...++..+-|.+|||||+++|..+|+.++||||.|||+.||+..+..|..
T Consensus       211 ------------------------------~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQA  260 (449)
T KOG0664|consen  211 ------------------------------RLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQA  260 (449)
T ss_pred             ------------------------------hhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhc
Confidence                                          01223445688999999999999999999999999999999999999988


Q ss_pred             CCh-HHHHHHHHHhCCchHHHHHHh--ccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          595 DPE-QNIKDIAKLRGSEDLWEVAKL--HNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       595 ~~~-~~l~~i~~~~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      ..+ +++..|..++|+|....+.-.  ..+.-     +......    .+.+..+.+.  .-+..-..+..+++.++|.+
T Consensus       261 q~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H-----~LR~~~k----~Ps~~vLYtl--sS~~~~~heav~~~~~~l~~  329 (449)
T KOG0664|consen  261 AGPIEQLQMIIDLLGTPSQEAMKYACEGAKNH-----VLRAGLR----APDTQRLYKI--ASPDDKNHEAVDLLQKLLHF  329 (449)
T ss_pred             cChHHHHHHHHHHhCCCcHHHHHHHhhhhHHH-----hhccCCC----CCCccceeee--cCCcccchHHHHHHHHHhCC
Confidence            766 889999999999877654321  00000     0000000    0000000000  00112235678999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccch
Q 004835          672 NPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      ||++|++.++++.|++....+
T Consensus       330 d~dkris~~~A~~~~~~~e~R  350 (449)
T KOG0664|consen  330 DPDKRISVEEALQHRYLEEGR  350 (449)
T ss_pred             CCcccccHhhhcccccccccc
Confidence            999999999999999987644

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=6.9e-34  Score=296.80  Aligned_cols=142  Identities=19%  Similarity=0.254  Sum_probs=124.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcC-----CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~-----~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ++|++.+.||.|+||.||+|+...     +.+.||+|.+.....   ...+.+|+.++++++|++ |+++++++......
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~   83 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKN-VVRLLGLCREAEPH   83 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcc-eeeeEEEECCCCcc
Confidence            579999999999999999999753     346899998865433   356889999999999998 99999999988999


Q ss_pred             EEEEeccCCCChHHHhh------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeee
Q 004835          273 CFVLEHVKHDRPEVLKK------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFN  340 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFG  340 (728)
                      |+||||++++++..+..            .+++..+..++.||+.||+|||+.+|+||||||+|||++ ..+.++|+|||
T Consensus        84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~-~~~~~~l~~~~  162 (275)
T cd05046          84 YMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVS-SQREVKVSLLS  162 (275)
T ss_pred             eEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEe-CCCcEEEcccc
Confidence            99999999888876642            378899999999999999999999999999999999998 56679999999


Q ss_pred             cccc
Q 004835          341 LAMV  344 (728)
Q Consensus       341 lA~~  344 (728)
                      ++..
T Consensus       163 ~~~~  166 (275)
T cd05046         163 LSKD  166 (275)
T ss_pred             cccc
Confidence            9863

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=4.2e-34  Score=310.71  Aligned_cols=143  Identities=22%  Similarity=0.335  Sum_probs=119.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEE-----cCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcC-CCCceEEecceEEe-C
Q 004835          200 FESFIVEEEEGSGGYGTVYRARR-----KNDGTVVAIKCPHANAS---KHYVSNELRMLERFG-GKNFIIKYEGCFKC-G  269 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~-----~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~-~  269 (728)
                      -++|++.+.||+|+||.||+|.+     ..+++.||||+++....   ...+.+|+.++.++. |+| |+++++++.. +
T Consensus         6 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~n-iv~~~~~~~~~~   84 (343)
T cd05103           6 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN-VVNLLGACTKPG   84 (343)
T ss_pred             hhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCcc-HhhhcceeecCC
Confidence            35899999999999999999985     34678999999875432   345778999999995 556 9999987754 4


Q ss_pred             CeeEEEEeccCCCChHHHhh------------------------------------------------------------
Q 004835          270 DSDCFVLEHVKHDRPEVLKK------------------------------------------------------------  289 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~------------------------------------------------------------  289 (728)
                      ...++||||+.++++..+..                                                            
T Consensus        85 ~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (343)
T cd05103          85 GPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEE  164 (343)
T ss_pred             CceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhh
Confidence            56899999999988765532                                                            


Q ss_pred             ----------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          290 ----------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       290 ----------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                                .+++..+..++.||+.||+|||++||+||||||+|||++ .++.++|+|||++..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~-~~~~~kl~dfg~~~~  228 (343)
T cd05103         165 EAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLS-ENNVVKICDFGLARD  228 (343)
T ss_pred             hhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEc-CCCcEEEEecccccc
Confidence                      146677888999999999999999999999999999999 667899999999864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.1e-33  Score=296.86  Aligned_cols=142  Identities=24%  Similarity=0.347  Sum_probs=122.3

Q ss_pred             CCeeEEEEecccCceEEEEEEE----cCCCeEEEEEeccCcCc--hhHHHHHHHHHHhcCCCCceEEecceEEe--CCee
Q 004835          201 ESFIVEEEEGSGGYGTVYRARR----KNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEGCFKC--GDSD  272 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~----~~~g~~VAIK~i~~~~~--~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--~~~~  272 (728)
                      ..|++.+.||+|+||.||+|..    ..++..||+|.+.....  ...+.+|+.++..+.|+| |+++++++..  ....
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~~   82 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDN-IVKYKGVCYSAGRRNL   82 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCC-eeEEEEEEccCCCCce
Confidence            4799999999999999999984    35688999999865432  346789999999999999 9999887643  3468


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||++++++..+..    .+++..+..++.|++.||+|||++||+||||||+|||++ +++.++|+|||++..
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~-~~~~~~l~dfg~~~~  157 (284)
T cd05081          83 RLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVE-SENRVKIGDFGLTKV  157 (284)
T ss_pred             EEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEEC-CCCeEEECCCccccc
Confidence            99999999988876653    378899999999999999999999999999999999998 667799999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=4.5e-34  Score=300.57  Aligned_cols=141  Identities=23%  Similarity=0.316  Sum_probs=122.3

Q ss_pred             CeeEEEEecccCceEEEEEEE----cCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeC--Cee
Q 004835          202 SFIVEEEEGSGGYGTVYRARR----KNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCG--DSD  272 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~----~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~--~~~  272 (728)
                      .|++.+.||+|+||.||+|++    ..++..||+|.+....   ....+.+|+.+++.+.|+| |+++++++...  ...
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~   83 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHEN-IVKYKGICTEDGGNGI   83 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCC-eeeeeeEEecCCCCce
Confidence            478999999999999999985    3568899999987432   2346889999999999999 99999988764  568


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++||||++++++..+..    .+++..+..++.||+.||+|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        84 ~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~-~~~~~~l~dfg~~~~  158 (284)
T cd05079          84 KLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVE-SEHQVKIGDFGLTKA  158 (284)
T ss_pred             EEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEEEc-CCCCEEECCCccccc
Confidence            99999999998877653    378899999999999999999999999999999999998 667799999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=4.2e-34  Score=298.03  Aligned_cols=139  Identities=26%  Similarity=0.351  Sum_probs=119.0

Q ss_pred             eEEEEecccCceEEEEEEEc----CCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          204 IVEEEEGSGGYGTVYRARRK----NDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       204 ~i~~~LG~G~fG~Vy~a~~~----~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .+.+.||.|.||.||+|.+.    ..+..|+||.+.....   ...+.+|+.++.+++|+| |+++++++...+..++|+
T Consensus         2 ~~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~n-i~~~~g~~~~~~~~~lv~   80 (259)
T PF07714_consen    2 KLIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPN-IVKLYGFCIENEPLFLVM   80 (259)
T ss_dssp             EEEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTT-BE-EEEEEESSSSEEEEE
T ss_pred             EEeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            57889999999999999997    3468899999965332   467889999999999999 999999999888899999


Q ss_pred             eccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.++.+..+..     .+++..+..|+.||+.||.|||+++|+|+||+++|||++ .++.+||+|||++..
T Consensus        81 e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~-~~~~~Kl~~f~~~~~  152 (259)
T PF07714_consen   81 EYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLD-SNGQVKLSDFGLSRP  152 (259)
T ss_dssp             E--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE-TTTEEEEESTTTGEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence            9999888776542     388899999999999999999999999999999999999 677899999999875

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=1e-33  Score=300.04  Aligned_cols=142  Identities=21%  Similarity=0.339  Sum_probs=122.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcC----------------CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKN----------------DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIK  261 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~----------------~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivk  261 (728)
                      ++|++.+.||+|+||.||+|.+..                ++..||+|++.....   ...+.+|+.+++.++|++ |++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~-i~~   83 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPN-IIR   83 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC-cce
Confidence            479999999999999999986532                345799999875432   356889999999999999 999


Q ss_pred             ecceEEeCCeeEEEEeccCCCChHHHhhc--------------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEe
Q 004835          262 YEGCFKCGDSDCFVLEHVKHDRPEVLKKE--------------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLF  327 (728)
Q Consensus       262 l~~~~~~~~~~~LV~E~~~~~~l~~l~~~--------------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILl  327 (728)
                      +++++...+..|+||||+.++++..+...              +++..+..++.||+.||+|||++||+||||||+|||+
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili  163 (296)
T cd05095          84 LLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLV  163 (296)
T ss_pred             EEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEEE
Confidence            99999999999999999998888766432              5567899999999999999999999999999999999


Q ss_pred             ecCCCceEEEeeecccc
Q 004835          328 SCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       328 d~~~~~~kL~DFGlA~~  344 (728)
                      + .++.++|+|||++..
T Consensus       164 ~-~~~~~~l~dfg~~~~  179 (296)
T cd05095         164 G-KNYTIKIADFGMSRN  179 (296)
T ss_pred             c-CCCCEEeccCccccc
Confidence            8 677899999999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=9.4e-34  Score=295.18  Aligned_cols=135  Identities=19%  Similarity=0.211  Sum_probs=114.8

Q ss_pred             EecccCceEEEEEEEcC--CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCC
Q 004835          208 EEGSGGYGTVYRARRKN--DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHD  282 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~--~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~  282 (728)
                      .||+|+||.||+|....  ....+|+|.+.....   ...+.+|+.+++.++|+| |+++++.+......|+||||+.++
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~n-ii~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPN-VLQCLGQCIESIPYLLVLEFCPLG   80 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCC-cceEEEEECCCCceEEEEEeCCCC
Confidence            68999999999997532  346789998764322   345778999999999999 999999999999999999999999


Q ss_pred             ChHHHhhc--------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          283 RPEVLKKE--------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       283 ~l~~l~~~--------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++..+...        .++..+..++.||+.||+|||++||+||||||+|||++ .++.+||+|||++..
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~-~~~~~kl~dfg~~~~  149 (269)
T cd05042          81 DLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLT-ADLSVKIGDYGLALE  149 (269)
T ss_pred             cHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheEec-CCCcEEEeccccccc
Confidence            88776532        35677889999999999999999999999999999999 667899999999863

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=1.3e-33  Score=294.51  Aligned_cols=135  Identities=20%  Similarity=0.206  Sum_probs=115.5

Q ss_pred             EecccCceEEEEEEEc--CCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCC
Q 004835          208 EEGSGGYGTVYRARRK--NDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHD  282 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~--~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~  282 (728)
                      .||+|+||.||+|...  .++..+|+|.+.....   ...+.+|+.++.+++|+| |+++++++......++||||++++
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSN-LLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCC-EeeEEEEEcCCCCcEEEEECCCCC
Confidence            5899999999999864  3457899998875432   235778999999999999 999999999889999999999998


Q ss_pred             ChHHHhhc--------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          283 RPEVLKKE--------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       283 ~l~~l~~~--------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++..+...        .++..++.++.|++.||+|||+.+|+||||||+||+++ .+..++|+|||++..
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~-~~~~~kL~dfg~~~~  149 (269)
T cd05087          81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLT-ADLTVKIGDYGLSHN  149 (269)
T ss_pred             cHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEc-CCCcEEECCcccccc
Confidence            88766531        35567788999999999999999999999999999999 667899999999863

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.4e-33  Score=290.26  Aligned_cols=135  Identities=22%  Similarity=0.300  Sum_probs=119.3

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~  283 (728)
                      ++||.|+||.||+|.+.. ++.||+|++.....   ...+.+|+.+++++.|++ |+++++++......++||||+.++.
T Consensus         1 ~~lg~g~~g~v~~~~~~~-~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~-i~~~~~~~~~~~~~~~v~e~~~~~~   78 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG-NTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPN-IVKLIGVCVQKQPIYIVMELVPGGS   78 (251)
T ss_pred             CccccCCCceEEEEEEeC-CCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC-eEEEEEEEecCCCeEEEEEcCCCCc
Confidence            368999999999999976 99999998875432   356789999999999998 9999999999999999999999887


Q ss_pred             hHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          284 PEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       284 l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +..+..    .+++..+..++.|++.||.|||+++|+||||||+|||++ .++.++|+|||++..
T Consensus        79 l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~-~~~~~~l~d~g~~~~  142 (251)
T cd05041          79 LLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVG-ENNVLKISDFGMSRE  142 (251)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEc-CCCcEEEeecccccc
Confidence            766542    267888999999999999999999999999999999998 667899999999864

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=3.4e-34  Score=294.54  Aligned_cols=127  Identities=20%  Similarity=0.193  Sum_probs=110.1

Q ss_pred             cCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCChHHHhh--
Q 004835          212 GGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKK--  289 (728)
Q Consensus       212 G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~~--  289 (728)
                      |.||.||++++..+++.||+|.+.....   ..+|...+....|++ |+++++++...+..|+||||+.++.+..+..  
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~---~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~   79 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSE---YSRERLTIIPHCVPN-MVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKF   79 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhh---hhhHHHHHHhcCCCc-eeehhhheecCCeEEEEEecCCCCCHHHHHHHh
Confidence            8999999999999999999999876432   334555555667888 9999999999999999999999988766542  


Q ss_pred             -cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          290 -EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       290 -~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                       .+++..+..++.|++.||.|||++||+||||||+||+++ .++.++|+|||++.
T Consensus        80 ~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~-~~~~~~l~df~~~~  133 (237)
T cd05576          80 LNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLD-DRGHIQLTYFSRWS  133 (237)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEc-CCCCEEEecccchh
Confidence             388999999999999999999999999999999999999 56679999999875

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=6.7e-34  Score=295.59  Aligned_cols=136  Identities=24%  Similarity=0.260  Sum_probs=116.3

Q ss_pred             EecccCceEEEEEEEcCCC------eEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          208 EEGSGGYGTVYRARRKNDG------TVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~~g------~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .||+|+||.||+|++....      ..||||.+....   ....+.+|+.+++.+.|++ |+++++++......++||||
T Consensus         2 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           2 FLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN-IVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             ccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCC-eeeEeeeecCCCCeEEEEec
Confidence            6899999999999986433      789999876432   3456789999999999999 99999999989999999999


Q ss_pred             cCCCChHHHhh----------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC----CceEEEeeecccc
Q 004835          279 VKHDRPEVLKK----------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~----------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~----~~~kL~DFGlA~~  344 (728)
                      ++++.+..+..          .+++..+..++.||+.||+|||+.+++|+||||+||+++..+    ..++|+|||++..
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~  160 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARD  160 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccccc
Confidence            99888766542          167788999999999999999999999999999999998433    2789999999864

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.1e-33  Score=294.39  Aligned_cols=142  Identities=20%  Similarity=0.255  Sum_probs=123.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCe----EEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGT----VVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~----~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+|++.+.||+|+||.||+|.+..+|.    .||+|.+.....   ...+.+|+.++.++.|+| |+++++++.. ...
T Consensus         6 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~-~~~   83 (279)
T cd05057           6 ETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPH-VVRLLGICLS-SQV   83 (279)
T ss_pred             HHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCC-cceEEEEEec-Cce
Confidence            3579999999999999999999876664    689998875533   346778999999999999 9999998876 789


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++||||+.++.+..+..    .+++..+..++.||+.||+|||++||+||||||+|||++ +.+.++|+|||++..
T Consensus        84 ~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~-~~~~~kL~dfg~~~~  158 (279)
T cd05057          84 QLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVK-TPQHVKITDFGLAKL  158 (279)
T ss_pred             EEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEc-CCCeEEECCCccccc
Confidence            99999999888776643    378999999999999999999999999999999999998 666799999999874

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.7e-33  Score=293.45  Aligned_cols=141  Identities=26%  Similarity=0.337  Sum_probs=121.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCC---CeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKND---GTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~---g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      ++|.+.+.||+|+||.||+|.+...   ...||||......   ..+.+.+|+.+++++.|++ |+++++++.. ...|+
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~-i~~~~~~~~~-~~~~l   83 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPH-IVKLIGVITE-NPVWI   83 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCc-hhceeEEEcC-CCcEE
Confidence            4799999999999999999997644   3579999877543   2446889999999999998 9999998864 56789


Q ss_pred             EEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.++.+..+..    .+++..+..++.|++.||.|||+.|++||||||+|||++ ..+.++|+|||++..
T Consensus        84 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~-~~~~~~l~d~g~~~~  156 (270)
T cd05056          84 VMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVLVS-SPDCVKLGDFGLSRY  156 (270)
T ss_pred             EEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEEEe-cCCCeEEccCceeee
Confidence            999999888877653    378999999999999999999999999999999999999 667899999999874

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=1.1e-33  Score=314.82  Aligned_cols=144  Identities=22%  Similarity=0.317  Sum_probs=122.7

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcCc---hhHHHHHHHHHHhcC-CCCceEEecceEEeC
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANAS---KHYVSNELRMLERFG-GKNFIIKYEGCFKCG  269 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~  269 (728)
                      ..++|.+.+.||+|+||.||+|++.     .+++.||||++.....   ...+.+|+.+|.++. |+| |+++++++...
T Consensus        35 ~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~n-iv~~~~~~~~~  113 (401)
T cd05107          35 PRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLN-IVNLLGACTKG  113 (401)
T ss_pred             cHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCC-eEEEEEEEccC
Confidence            4467899999999999999999964     3457899999975432   245778999999998 888 99999999999


Q ss_pred             CeeEEEEeccCCCChHHHhhc-----------------------------------------------------------
Q 004835          270 DSDCFVLEHVKHDRPEVLKKE-----------------------------------------------------------  290 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~~-----------------------------------------------------------  290 (728)
                      ...|+||||+.++.|..+++.                                                           
T Consensus       114 ~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (401)
T cd05107         114 GPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQ  193 (401)
T ss_pred             CCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchh
Confidence            999999999999887655421                                                           


Q ss_pred             ------------------------------------------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee
Q 004835          291 ------------------------------------------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS  328 (728)
Q Consensus       291 ------------------------------------------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld  328 (728)
                                                                +++..+..|+.||+.||.|||+.+|+||||||+|||++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~NiLl~  273 (401)
T cd05107         194 DMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLIC  273 (401)
T ss_pred             cchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcceEEEe
Confidence                                                      45566788999999999999999999999999999999


Q ss_pred             cCCCceEEEeeecccc
Q 004835          329 CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       329 ~~~~~~kL~DFGlA~~  344 (728)
                       ++..++|+|||+++.
T Consensus       274 -~~~~~kL~DfGla~~  288 (401)
T cd05107         274 -EGKLVKICDFGLARD  288 (401)
T ss_pred             -CCCEEEEEecCccee
Confidence             677899999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=8.5e-34  Score=292.37  Aligned_cols=136  Identities=20%  Similarity=0.224  Sum_probs=116.7

Q ss_pred             EEecccCceEEEEEEEcCCC----------eEEEEEeccCcCc-hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          207 EEEGSGGYGTVYRARRKNDG----------TVVAIKCPHANAS-KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g----------~~VAIK~i~~~~~-~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      +.||+|+||.||+|.+..++          ..|++|++..... ...+.+|+.+++.++|++ |+++++++.. ...++|
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~-~~~~lv   78 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKH-LVKLYGVCVR-DENIMV   78 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcc-hhheeeEEec-CCcEEE
Confidence            36899999999999998766          4588888765433 567889999999999999 9999998887 778999


Q ss_pred             EeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC------ceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV------KGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~------~~kL~DFGlA~~  344 (728)
                      |||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++.++.      .++|+|||++..
T Consensus        79 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~  157 (259)
T cd05037          79 EEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPIT  157 (259)
T ss_pred             EEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCcccc
Confidence            99999999887654    3788899999999999999999999999999999999984431      589999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=1.9e-33  Score=290.21  Aligned_cols=135  Identities=21%  Similarity=0.288  Sum_probs=116.6

Q ss_pred             EEecccCceEEEEEEEcC-CC--eEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKN-DG--TVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~-~g--~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +.||+|+||.||+|.+.. ++  ..||||.+.....   ...+.+|+.++++++|++ |+++++.+.. ...++||||+.
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~-~~~~~v~e~~~   78 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHEN-LIRLYGVVLT-HPLMMVTELAP   78 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCC-ccceeEEEcC-CeEEEEEEecC
Confidence            368999999999999865 33  3699999876543   456889999999999999 9999998887 88999999999


Q ss_pred             CCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          281 HDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++.+.....     .+++..+..++.|++.||.|||++|++||||||+||+++ .++.+||+|||++..
T Consensus        79 ~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~-~~~~~kl~dfg~~~~  146 (257)
T cd05040          79 LGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLA-SDDKVKIGDFGLMRA  146 (257)
T ss_pred             CCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEEEe-cCCEEEecccccccc
Confidence            887765542     368889999999999999999999999999999999999 557899999999875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.2e-34  Score=338.94  Aligned_cols=143  Identities=27%  Similarity=0.367  Sum_probs=121.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEe--------
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKC--------  268 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--------  268 (728)
                      +.+|+.++.||+||||.||+++++-+|+.||||++.....   ...+.+|+.+|.+|+||| ||+++..+.+        
T Consensus       478 ~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpN-VVRYysAWVEs~~~~~~~  556 (1351)
T KOG1035|consen  478 LNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPN-VVRYYSAWVESTAELTVL  556 (1351)
T ss_pred             hhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcc-eeeeehhhhccCCccccc
Confidence            4578889999999999999999999999999999876532   345789999999999999 8887765420        


Q ss_pred             ----------------------------------------------------------------------C---------
Q 004835          269 ----------------------------------------------------------------------G---------  269 (728)
Q Consensus       269 ----------------------------------------------------------------------~---------  269 (728)
                                                                                            +         
T Consensus       557 ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~~  636 (1351)
T KOG1035|consen  557 EIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSDS  636 (1351)
T ss_pred             cccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCccccccccccccccccccc
Confidence                                                                                  0         


Q ss_pred             --------------------------------CeeEEEEeccCCCChHHHhhc--C--ChHHHHHHHHHHHHHHHHHHhC
Q 004835          270 --------------------------------DSDCFVLEHVKHDRPEVLKKE--I--DLSQLQWYGYCLFRALASLHKQ  313 (728)
Q Consensus       270 --------------------------------~~~~LV~E~~~~~~l~~l~~~--l--~~~~~~~i~~QIl~aL~yLHs~  313 (728)
                                                      ..+||-||||+..++..+++.  +  .....+++++||++||+|+|++
T Consensus       637 e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~~  716 (1351)
T KOG1035|consen  637 EGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHDQ  716 (1351)
T ss_pred             CCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhC
Confidence                                            135788999999988888754  3  3678899999999999999999


Q ss_pred             CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          314 GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       314 gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||||||||.||+|+ ....+||+|||+|..
T Consensus       717 giIHRDLKP~NIFLd-~~~~VKIGDFGLAt~  746 (1351)
T KOG1035|consen  717 GIIHRDLKPRNIFLD-SRNSVKIGDFGLATD  746 (1351)
T ss_pred             ceeeccCCcceeEEc-CCCCeeecccccchh
Confidence            999999999999999 666799999999975

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=1.6e-33  Score=300.11  Aligned_cols=142  Identities=20%  Similarity=0.253  Sum_probs=121.0

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCe----EEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGT----VVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~----~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .++|++.+.||+|+||.||+|.+..+|.    .||+|.+.....   ...+.+|+.++..+.|+| |+++++++.. ...
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~n-iv~~~~~~~~-~~~   83 (303)
T cd05110           6 ETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPH-LVRLLGVCLS-PTI   83 (303)
T ss_pred             hhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC-cccEEEEEcC-CCc
Confidence            3578999999999999999999887775    579998765433   235778999999999999 9999998865 457


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++|+||++++.+..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ +++.+||+|||++..
T Consensus        84 ~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~-~~~~~kL~Dfg~~~~  158 (303)
T cd05110          84 QLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVK-SPNHVKITDFGLARL  158 (303)
T ss_pred             eeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceeeec-CCCceEEcccccccc
Confidence            89999999887766543    378889999999999999999999999999999999998 666799999999874

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=2.2e-33  Score=290.60  Aligned_cols=135  Identities=21%  Similarity=0.283  Sum_probs=113.1

Q ss_pred             EecccCceEEEEEEEcC---CCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEE-eCCeeEEEEeccC
Q 004835          208 EEGSGGYGTVYRARRKN---DGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFK-CGDSDCFVLEHVK  280 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~---~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~-~~~~~~LV~E~~~  280 (728)
                      .||+|+||.||+|.+..   .+..||||.+....   ....+.+|+.+++.++|++ |+++++++. .+...++||||+.
T Consensus         2 ~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           2 VIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPN-VLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             cccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCC-cceEEEEeecCCCCcEEEEecCC
Confidence            68999999999998753   34689999875432   2346778999999999999 888888664 4567899999999


Q ss_pred             CCChHHHhhc----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          281 HDRPEVLKKE----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~~~----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++..+...    +.+..+..++.||+.||+|||+.+|+||||||+|||++ +.+.+||+|||++..
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~-~~~~~kl~dfg~~~~  147 (262)
T cd05058          81 HGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLD-ESFTVKVADFGLARD  147 (262)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEc-CCCcEEECCcccccc
Confidence            9888776532    56777888999999999999999999999999999999 667799999999864

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.7e-33  Score=294.08  Aligned_cols=142  Identities=24%  Similarity=0.366  Sum_probs=124.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcC----CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEe--CCe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKN----DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKC--GDS  271 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~----~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--~~~  271 (728)
                      ..|++.+.||+|+||.||+|.+..    ++..||||++.....   ...+.+|+.+++.+.|++ |+++++++..  +..
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~-i~~~~~~~~~~~~~~   82 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHEN-IVKYKGVCEKPGGRS   82 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCC-hheEEeeeecCCCCc
Confidence            468888999999999999999753    478999999875543   457889999999999998 9999988876  567


Q ss_pred             eEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .++||||++++.+..+..    .+++..+..++.||+.||+|||++||+||||||+||+++ .++.++|+|||++..
T Consensus        83 ~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~-~~~~~~l~dfg~~~~  158 (284)
T cd05038          83 LRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVE-SEDLVKISDFGLAKV  158 (284)
T ss_pred             eEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEc-CCCCEEEcccccccc
Confidence            899999999988876653    288899999999999999999999999999999999999 567899999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=2.9e-33  Score=297.30  Aligned_cols=142  Identities=22%  Similarity=0.387  Sum_probs=108.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCC---CeEEEEEeccCcCch-------------hHHHHHHHHHHhcCCCCceEEecc
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKND---GTVVAIKCPHANASK-------------HYVSNELRMLERFGGKNFIIKYEG  264 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~---g~~VAIK~i~~~~~~-------------~~~~~Ei~iL~~L~h~n~Ivkl~~  264 (728)
                      ++|.+.+.||+|+||.||+|.+..+   +..+|+|+.......             .....++..+..+.|++ |+++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~-i~~~~~   90 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLG-IPKYYG   90 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCC-CCcEEE
Confidence            5899999999999999999999877   678888865422211             01122334455678888 888888


Q ss_pred             eEEeCC----eeEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEe
Q 004835          265 CFKCGD----SDCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLID  338 (728)
Q Consensus       265 ~~~~~~----~~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~D  338 (728)
                      ++....    ..+++++++.......+..  ..++..++.++.|++.||+|||+++|+||||||+|||++ ..+.++|+|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~-~~~~~~l~D  169 (294)
T PHA02882         91 CGSFKRCRMYYRFILLEKLVENTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVD-GNNRGYIID  169 (294)
T ss_pred             eeeEecCCceEEEEEEehhccCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEc-CCCcEEEEE
Confidence            765443    4478888876654433322  357788899999999999999999999999999999998 667799999


Q ss_pred             eecccc
Q 004835          339 FNLAMV  344 (728)
Q Consensus       339 FGlA~~  344 (728)
                      ||+|+.
T Consensus       170 FGla~~  175 (294)
T PHA02882        170 YGIASH  175 (294)
T ss_pred             cCCcee
Confidence            999974

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-34  Score=329.44  Aligned_cols=143  Identities=24%  Similarity=0.391  Sum_probs=128.1

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcC-----CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~-----~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ..+....+.||+|+||+||+|+...     ....||||.++....   ..+|++|++++..++|+| ||+++|.+..++.
T Consensus       485 r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~n-IVrLlGVC~~~~P  563 (774)
T KOG1026|consen  485 RSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPN-IVRLLGVCREGDP  563 (774)
T ss_pred             hhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCC-eEEEEEEEccCCe
Confidence            4567888999999999999998742     346899999986543   467999999999999999 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh-------------c----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCce
Q 004835          272 DCFVLEHVKHDRPEVLKK-------------E----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKG  334 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~-------------~----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~  334 (728)
                      .|+|+|||.+|+|..+++             .    ++..+.+.|+.||+.|+.||-++.+|||||-..|+||. ++..+
T Consensus       564 ~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVg-e~l~V  642 (774)
T KOG1026|consen  564 LCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVG-ENLVV  642 (774)
T ss_pred             eEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceec-cceEE
Confidence            999999999999887752             1    66788999999999999999999999999999999999 88999


Q ss_pred             EEEeeecccc
Q 004835          335 YLIDFNLAMV  344 (728)
Q Consensus       335 kL~DFGlA~~  344 (728)
                      ||+|||+++.
T Consensus       643 KIsDfGLsRd  652 (774)
T KOG1026|consen  643 KISDFGLSRD  652 (774)
T ss_pred             Eecccccchh
Confidence            9999999985

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=7.9e-33  Score=287.89  Aligned_cols=141  Identities=27%  Similarity=0.384  Sum_probs=119.6

Q ss_pred             CeeEEEEecccCceEEEEEEEcC-CCeEEEEEeccCcC------------chhHHHHHHHHHHh-cCCCCceEEecceEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKN-DGTVVAIKCPHANA------------SKHYVSNELRMLER-FGGKNFIIKYEGCFK  267 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~-~g~~VAIK~i~~~~------------~~~~~~~Ei~iL~~-L~h~n~Ivkl~~~~~  267 (728)
                      +|++.+.||+|+||.||+|.+.. +++.+|+|.+....            ....+.+|+.++.+ ++|+| |+++++++.
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~-i~~~~~~~~   79 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPN-IVRYYKTFL   79 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCC-eeeEEeeEc
Confidence            48889999999999999999987 67899999875221            12346678887765 78888 999999999


Q ss_pred             eCCeeEEEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCceEEEee
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVKGYLIDF  339 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~~kL~DF  339 (728)
                      .++..|+||||+.++.+..+..       .+++..++.++.|++.||.|||+ .+|+||||||+|||++ ..+.++|+||
T Consensus        80 ~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~-~~~~~~l~df  158 (269)
T cd08528          80 ENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLG-EDDKVTITDF  158 (269)
T ss_pred             cCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEEC-CCCcEEEecc
Confidence            9999999999999988765431       37888999999999999999996 7899999999999999 6667999999


Q ss_pred             ecccc
Q 004835          340 NLAMV  344 (728)
Q Consensus       340 GlA~~  344 (728)
                      |++..
T Consensus       159 g~~~~  163 (269)
T cd08528         159 GLAKQ  163 (269)
T ss_pred             cceee
Confidence            99864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=1.2e-32  Score=287.75  Aligned_cols=134  Identities=19%  Similarity=0.185  Sum_probs=113.0

Q ss_pred             EecccCceEEEEEEEcCC--CeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCC
Q 004835          208 EEGSGGYGTVYRARRKND--GTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHD  282 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~~--g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~  282 (728)
                      .||+|+||.||+|....+  ...+++|.+....   ....+.+|+.++..++|+| |+++++.+......|+||||+.++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~-iv~~~~~~~~~~~~~lv~e~~~~~   80 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPN-ILQCLGQCVEAIPYLLVFEYCELG   80 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcc-hhheEEEecCCCccEEEEecCCCC
Confidence            689999999999976433  2456777765432   3456889999999999999 999999999999999999999998


Q ss_pred             ChHHHhhc-------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          283 RPEVLKKE-------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       283 ~l~~l~~~-------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      .+..+...       +.+..++.++.||+.||+|||+++|+||||||+|||++ .++.++|+|||++.
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~-~~~~~~l~Dfg~~~  147 (268)
T cd05086          81 DLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLT-SDLTVKVGDYGIGP  147 (268)
T ss_pred             cHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEEEc-CCccEEeccccccc
Confidence            88765432       45567788999999999999999999999999999998 66779999999975

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=7.8e-33  Score=288.18  Aligned_cols=140  Identities=21%  Similarity=0.297  Sum_probs=117.1

Q ss_pred             eeEEEEecccCceEEEEEEEcC---CCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCC-----
Q 004835          203 FIVEEEEGSGGYGTVYRARRKN---DGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD-----  270 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~---~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~-----  270 (728)
                      |.+.+.||+|+||.||+|.+..   +++.||||++....    ..+.+.+|+.+++.+.|++ |+++++++....     
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~~~   79 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPN-VIKLIGVSLRSRAKGRL   79 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCC-cceEEEEEccCCCCCcc
Confidence            6778899999999999998653   57899999887532    2345778999999999998 999999875432     


Q ss_pred             -eeEEEEeccCCCChHHHhh---------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeee
Q 004835          271 -SDCFVLEHVKHDRPEVLKK---------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFN  340 (728)
Q Consensus       271 -~~~LV~E~~~~~~l~~l~~---------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFG  340 (728)
                       ..++++||+.++.+..+..         .+++..++.++.||+.||+|||+.||+||||||+||+++ .+..++|+|||
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~-~~~~~kl~dfg  158 (273)
T cd05074          80 PIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLN-ENMTVCVADFG  158 (273)
T ss_pred             cceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEc-CCCCEEECccc
Confidence             3478899999888765431         267888999999999999999999999999999999998 67789999999


Q ss_pred             cccc
Q 004835          341 LAMV  344 (728)
Q Consensus       341 lA~~  344 (728)
                      +++.
T Consensus       159 ~~~~  162 (273)
T cd05074         159 LSKK  162 (273)
T ss_pred             cccc
Confidence            9874

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-34  Score=304.17  Aligned_cols=149  Identities=26%  Similarity=0.362  Sum_probs=129.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---------hhHHHHHHHHHHhcCCCCceEEecceEE-eCC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---------KHYVSNELRMLERFGGKNFIIKYEGCFK-CGD  270 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---------~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~-~~~  270 (728)
                      ++|-++..||+|+|+.||+|.+....+.||+|+-..+..         .+...+|..|.+.|.||. ||++|++|. +.+
T Consensus       463 ~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpR-IVKlYDyfslDtd  541 (775)
T KOG1151|consen  463 DRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPR-IVKLYDYFSLDTD  541 (775)
T ss_pred             HHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcce-eeeeeeeeeeccc
Confidence            579999999999999999999999999999998653321         234568999999999999 999999986 567


Q ss_pred             eeEEEEeccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhC--CcEeccCCCCceEeecC--CCceEEEeeeccc
Q 004835          271 SDCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQ--GIVHRDVKPGNFLFSCK--AVKGYLIDFNLAM  343 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~--gIIHRDIKPeNILld~~--~~~~kL~DFGlA~  343 (728)
                      .+|-|+|||+|..|+++++.   +++.+++.|+.||+.||.||...  .|||-||||.|||+-..  .+.+||+|||+++
T Consensus       542 sFCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSK  621 (775)
T KOG1151|consen  542 SFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSK  621 (775)
T ss_pred             cceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhh
Confidence            89999999999999988754   89999999999999999999976  69999999999999733  3678999999999


Q ss_pred             cccCCCC
Q 004835          344 VGFDGSF  350 (728)
Q Consensus       344 ~~~~~~~  350 (728)
                      ++.+.++
T Consensus       622 IMdddSy  628 (775)
T KOG1151|consen  622 IMDDDSY  628 (775)
T ss_pred             hccCCcc
Confidence            8766554

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=8.5e-33  Score=315.18  Aligned_cols=144  Identities=26%  Similarity=0.433  Sum_probs=129.1

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEE-----eCCeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFK-----CGDSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~-----~~~~~~  273 (728)
                      .+.|+|.++||.|.+|.||+++.+.+++.+|+|+.... ...+.+..|..+|+...|+++++.++++|.     .++.+|
T Consensus        18 ~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLW   97 (953)
T KOG0587|consen   18 ADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLW   97 (953)
T ss_pred             CCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEE
Confidence            46799999999999999999999999999999998754 445667889999999887777999999986     357899


Q ss_pred             EEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||||.+|+..++.+     ++.|..+..|.+.++.||.+||...+||||||-.|||++ .++.+||+|||++..
T Consensus        98 LVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT-~e~~VKLvDFGvSaQ  172 (953)
T KOG0587|consen   98 LVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLT-ENAEVKLVDFGVSAQ  172 (953)
T ss_pred             EEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEe-ccCcEEEeeeeeeee
Confidence            9999999999888765     388999999999999999999999999999999999999 777899999999875

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-34  Score=318.97  Aligned_cols=144  Identities=27%  Similarity=0.350  Sum_probs=125.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC---cCchhHHHHHHHHHHhcCCCCceEEecceEEeC------Ce
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA---NASKHYVSNELRMLERFGGKNFIIKYEGCFKCG------DS  271 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~---~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~------~~  271 (728)
                      ..|...+.||+|+||.||+|+++.+|+.||||.++.   ....+...+|+++|++++|+| ||++++.-++.      ..
T Consensus        13 y~W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~N-IVk~f~iee~~~~~~~~~~   91 (732)
T KOG4250|consen   13 YLWEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPN-IVKLFDIEETKFLGLVTRL   91 (732)
T ss_pred             cceeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchh-hhhhcccCCccccCccccc
Confidence            356778899999999999999999999999999886   345667789999999999999 99999886644      35


Q ss_pred             eEEEEeccCCCChHHHhhc------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--C-CceEEEeeecc
Q 004835          272 DCFVLEHVKHDRPEVLKKE------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--A-VKGYLIDFNLA  342 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~~------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~-~~~kL~DFGlA  342 (728)
                      ..+|||||.+|++....+.      +++.+++.++..+..||.|||.+||+||||||+||++-..  + ...||+|||.|
T Consensus        92 ~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~A  171 (732)
T KOG4250|consen   92 PVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAA  171 (732)
T ss_pred             ceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeeccccc
Confidence            7999999999999877643      9999999999999999999999999999999999999622  1 23589999999


Q ss_pred             ccc
Q 004835          343 MVG  345 (728)
Q Consensus       343 ~~~  345 (728)
                      +..
T Consensus       172 rel  174 (732)
T KOG4250|consen  172 REL  174 (732)
T ss_pred             ccC
Confidence            853

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-33  Score=327.28  Aligned_cols=146  Identities=19%  Similarity=0.251  Sum_probs=127.5

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCC-----eEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDG-----TVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g-----~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      .-...++.+.||+|+||.||.|......     ..||||.+...   .....|.+|..+++.++||| |++++|.+....
T Consensus       690 ~~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpN-iv~liGv~l~~~  768 (1025)
T KOG1095|consen  690 PRKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPN-IVSLIGVCLDSG  768 (1025)
T ss_pred             ChhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcc-eeeEEEeecCCC
Confidence            3457888999999999999999986433     24999988754   34567899999999999999 999999999999


Q ss_pred             eeEEEEeccCCCChHHHhhc----------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeee
Q 004835          271 SDCFVLEHVKHDRPEVLKKE----------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFN  340 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~~----------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFG  340 (728)
                      ..+|++|||.+|.|..+++.          +.......++.+|++|+.||+++++|||||-..|+||+ ....+||+|||
T Consensus       769 ~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~-~~r~VKIaDFG  847 (1025)
T KOG1095|consen  769 PPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLD-ERRVVKIADFG  847 (1025)
T ss_pred             CcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeec-ccCcEEEcccc
Confidence            99999999999988776542          67889999999999999999999999999999999999 55789999999


Q ss_pred             cccccc
Q 004835          341 LAMVGF  346 (728)
Q Consensus       341 lA~~~~  346 (728)
                      +|+.+.
T Consensus       848 lArDiy  853 (1025)
T KOG1095|consen  848 LARDIY  853 (1025)
T ss_pred             hhHhhh
Confidence            999543

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-33  Score=310.15  Aligned_cols=149  Identities=21%  Similarity=0.323  Sum_probs=128.1

Q ss_pred             cccCCCCCCeeEEEEecccCceEEEEEEEcCCCe---E-EEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecc
Q 004835          194 AKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGT---V-VAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEG  264 (728)
Q Consensus       194 ~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~---~-VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~  264 (728)
                      ..+...-++-.+.++||+|+||.||+|+.+..+.   . ||||.....     .....+.+|.+++++++|+| |+++||
T Consensus       150 ~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~N-VVr~yG  228 (474)
T KOG0194|consen  150 QKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPN-VVRFYG  228 (474)
T ss_pred             cccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCC-EEEEEE
Confidence            3344445566777999999999999999875432   3 899988742     23456889999999999999 999999


Q ss_pred             eEEeCCeeEEEEeccCCCChHHHhhc----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeee
Q 004835          265 CFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFN  340 (728)
Q Consensus       265 ~~~~~~~~~LV~E~~~~~~l~~l~~~----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFG  340 (728)
                      +......+++|||+|.||.|..+++.    ++..+...++.+.+.||+|||++++|||||-..|+|++ .+..+||+|||
T Consensus       229 Va~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~-~~~~vKISDFG  307 (474)
T KOG0194|consen  229 VAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYS-KKGVVKISDFG  307 (474)
T ss_pred             EEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHheec-CCCeEEeCccc
Confidence            99999999999999999998887654    78899999999999999999999999999999999999 66668999999


Q ss_pred             cccc
Q 004835          341 LAMV  344 (728)
Q Consensus       341 lA~~  344 (728)
                      +++.
T Consensus       308 Ls~~  311 (474)
T KOG0194|consen  308 LSRA  311 (474)
T ss_pred             cccC
Confidence            9875

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=100.00  E-value=7.2e-32  Score=306.42  Aligned_cols=145  Identities=22%  Similarity=0.316  Sum_probs=112.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEc----------------CCCeEEEEEeccCcCc----------------hhHHHHH
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRK----------------NDGTVVAIKCPHANAS----------------KHYVSNE  246 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~----------------~~g~~VAIK~i~~~~~----------------~~~~~~E  246 (728)
                      ..++|.+.++||+|+||+||+|.+.                ..++.||||.+.....                .+....|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            4679999999999999999999752                2356899998764221                1223357


Q ss_pred             HHHHHhcCCCCc----eEEecceEEe--------CCeeEEEEeccCCCChHHHhh-------------------------
Q 004835          247 LRMLERFGGKNF----IIKYEGCFKC--------GDSDCFVLEHVKHDRPEVLKK-------------------------  289 (728)
Q Consensus       247 i~iL~~L~h~n~----Ivkl~~~~~~--------~~~~~LV~E~~~~~~l~~l~~-------------------------  289 (728)
                      +.++.++.|++.    ++.++++|..        .+..||||||+.++++..+..                         
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~  302 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP  302 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence            777888877662    3556666542        356899999999988765532                         


Q ss_pred             --cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          290 --EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       290 --~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                        .+++..++.++.|++.||.|||+++|+||||||+|||++ .+..++|+|||++..
T Consensus       303 ~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~-~~~~~kL~DFGla~~  358 (507)
T PLN03224        303 QDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVT-VDGQVKIIDFGAAVD  358 (507)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEEC-CCCcEEEEeCcCccc
Confidence              134567888999999999999999999999999999999 566799999999864

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.98  E-value=2.5e-31  Score=268.11  Aligned_cols=130  Identities=31%  Similarity=0.471  Sum_probs=116.5

Q ss_pred             CceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCChHHHhh
Q 004835          213 GYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKK  289 (728)
Q Consensus       213 ~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~~  289 (728)
                      +||.||+|.+..+|+.||+|++.....   ...+.+|+..+++++|++ |+++++++......++++||++++.+..+..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~-i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~   79 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPN-IVRLYDVFEDEDKLYLVMEYCDGGDLFDLLK   79 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCc-HHHHHhheeeCCEEEEEEeCCCCCCHHHHHH
Confidence            589999999988899999999876543   567889999999999998 9999999999899999999999977776653


Q ss_pred             c---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          290 E---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       290 ~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .   +++..+..++.+++.+|.|||+.+|+|+||+|.||+++ +++.++|+|||.+..
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~-~~~~~~l~d~~~~~~  136 (244)
T smart00220       80 KRGRLSEDEARFYARQILSALEYLHSNGIIHRDLKPENILLD-EDGHVKLADFGLARQ  136 (244)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEEC-CCCcEEEccccceee
Confidence            3   78899999999999999999999999999999999999 567899999999874

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.97  E-value=3.1e-33  Score=282.95  Aligned_cols=142  Identities=24%  Similarity=0.304  Sum_probs=120.2

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      +++-...||.|+||+|++-.++.+|+..|||.++..   ....++..|.....+-...++|+++|+..-.++..|+.||+
T Consensus        65 ~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMEL  144 (361)
T KOG1006|consen   65 NLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMEL  144 (361)
T ss_pred             hHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHH
Confidence            455567899999999999999999999999998854   34567888998877776666699999999889999999999


Q ss_pred             cCCCChHHHh-------hcCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLK-------KEIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~-------~~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |.-..-..+.       ..+++.-+-.|+...+.||.||-.. .||||||||+||||+ ..+.+||||||++..
T Consensus       145 Md~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILld-r~G~vKLCDFGIcGq  217 (361)
T KOG1006|consen  145 MDISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLD-RHGDVKLCDFGICGQ  217 (361)
T ss_pred             HhhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEe-cCCCEeeecccchHh
Confidence            9876543332       2488888888999999999999875 899999999999999 666799999999864

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.7e-31  Score=291.37  Aligned_cols=147  Identities=18%  Similarity=0.252  Sum_probs=129.1

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +....++||-|.||.||.|.|+.-.-.||||.++... ..+.|+.|..+++.+.|+| +|+++++|.....+|||.|||.
T Consensus       268 dItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpN-LVqLLGVCT~EpPFYIiTEfM~  346 (1157)
T KOG4278|consen  268 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN-LVQLLGVCTHEPPFYIITEFMC  346 (1157)
T ss_pred             heeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCcc-HHHHhhhhccCCCeEEEEeccc
Confidence            4456779999999999999999989999999998654 4578999999999999999 9999999999999999999999


Q ss_pred             CCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          281 HDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       281 ~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      .|.|-.+++.     ++.-..+.++.||..|+.||..+++|||||-..|+|+. ++..+|++|||+++++..+.+
T Consensus       347 yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCLVg-EnhiVKvADFGLsRlMtgDTY  420 (1157)
T KOG4278|consen  347 YGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVG-ENHIVKVADFGLSRLMTGDTY  420 (1157)
T ss_pred             CccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccc-ccceEEeeccchhhhhcCCce
Confidence            8766555443     56666788999999999999999999999999999999 888899999999998655443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=5e-31  Score=323.33  Aligned_cols=137  Identities=17%  Similarity=0.239  Sum_probs=118.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      ..|.....||+|+||.||+|++..+|..||||.+......  ...|+.++++++||| |+++++++......|+||||++
T Consensus       690 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~--~~~~~~~l~~l~Hpn-Iv~~~~~~~~~~~~~lv~Ey~~  766 (968)
T PLN00113        690 SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI--PSSEIADMGKLQHPN-IVKLIGLCRSEKGAYLIHEYIE  766 (968)
T ss_pred             hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc--cHHHHHHHhhCCCCC-cceEEEEEEcCCCCEEEEeCCC
Confidence            3466778999999999999999889999999988644322  235789999999999 9999999999999999999999


Q ss_pred             CCChHHHhhcCChHHHHHHHHHHHHHHHHHH---hCCcEeccCCCCceEeecCCCceEEEeeecc
Q 004835          281 HDRPEVLKKEIDLSQLQWYGYCLFRALASLH---KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       281 ~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLH---s~gIIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                      ++.+..+.+.+++..+..|+.||+.||+|||   +.+|+||||||+||+++ .+...++. ||.+
T Consensus       767 ~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~-~~~~~~~~-~~~~  829 (968)
T PLN00113        767 GKNLSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIID-GKDEPHLR-LSLP  829 (968)
T ss_pred             CCcHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEEC-CCCceEEE-eccc
Confidence            9999988888999999999999999999999   66999999999999998 44445553 5443

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.97  E-value=9.5e-32  Score=305.48  Aligned_cols=138  Identities=25%  Similarity=0.280  Sum_probs=110.2

Q ss_pred             eEEEEecccCceE-EEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCC
Q 004835          204 IVEEEEGSGGYGT-VYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHD  282 (728)
Q Consensus       204 ~i~~~LG~G~fG~-Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~  282 (728)
                      .-.+++|.|+.|+ ||+|.+  .|+.||||.+-.. ....+.+|+..|+.-..+++|+++++.-.+..+.||..|.|...
T Consensus       512 ~~~eilG~Gs~Gt~Vf~G~y--e~R~VAVKrll~e-~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~s  588 (903)
T KOG1027|consen  512 SPKEILGYGSNGTVVFRGVY--EGREVAVKRLLEE-FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCACS  588 (903)
T ss_pred             ccHHHcccCCCCcEEEEEee--CCceehHHHHhhH-hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhhhh
Confidence            3345689999985 899999  6899999987443 23456799999998764444999999999999999999999987


Q ss_pred             ChHHHhhc------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec----CCCceEEEeeecccc
Q 004835          283 RPEVLKKE------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC----KAVKGYLIDFNLAMV  344 (728)
Q Consensus       283 ~l~~l~~~------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~----~~~~~kL~DFGlA~~  344 (728)
                      +-+.+...      ..-.....++.|++.||++||+.+||||||||.||||+.    ....++|+|||+++.
T Consensus       589 L~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKk  660 (903)
T KOG1027|consen  589 LQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKK  660 (903)
T ss_pred             HHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccc
Confidence            65544431      111345778999999999999999999999999999985    236789999999985

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.4e-30  Score=279.27  Aligned_cols=144  Identities=28%  Similarity=0.369  Sum_probs=123.3

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHH--hcCCCCceEEecceEEeCC---
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLE--RFGGKNFIIKYEGCFKCGD---  270 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~--~L~h~n~Ivkl~~~~~~~~---  270 (728)
                      .+.++...++.++||+|.||.||+|..  +++.||||++... ..+.+.+|-.|.+  .+.|+| |+++++.-..+.   
T Consensus       205 pl~~l~pl~l~eli~~Grfg~V~KaqL--~~~~VAVKifp~~-~kqs~~~Ek~Iy~lp~m~h~n-Il~Fi~~ekr~t~~~  280 (534)
T KOG3653|consen  205 PLLELDPLQLLELIGRGRFGCVWKAQL--DNRLVAVKIFPEQ-EKQSFQNEKNIYSLPGMKHEN-ILQFIGAEKRGTADR  280 (534)
T ss_pred             ccccCCchhhHHHhhcCccceeehhhc--cCceeEEEecCHH-HHHHHHhHHHHHhccCccchh-HHHhhchhccCCccc
Confidence            344567788999999999999999998  5799999998654 3445667766655  578999 999998877666   


Q ss_pred             -eeEEEEeccCCCChHHHhhc--CChHHHHHHHHHHHHHHHHHHh---------CCcEeccCCCCceEeecCCCceEEEe
Q 004835          271 -SDCFVLEHVKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHK---------QGIVHRDVKPGNFLFSCKAVKGYLID  338 (728)
Q Consensus       271 -~~~LV~E~~~~~~l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs---------~gIIHRDIKPeNILld~~~~~~kL~D  338 (728)
                       .++||++|.+.|+|..+++.  ++|....+|+.-+++||+|||+         ..|+|||||..||||. .+..+.|+|
T Consensus       281 ~eywLVt~fh~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK-~DlTccIaD  359 (534)
T KOG3653|consen  281 MEYWLVTEFHPKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVK-NDLTCCIAD  359 (534)
T ss_pred             cceeEEeeeccCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEc-cCCcEEeec
Confidence             78999999999999888764  8999999999999999999996         3699999999999998 677899999


Q ss_pred             eecccc
Q 004835          339 FNLAMV  344 (728)
Q Consensus       339 FGlA~~  344 (728)
                      ||+|..
T Consensus       360 FGLAl~  365 (534)
T KOG3653|consen  360 FGLALR  365 (534)
T ss_pred             cceeEE
Confidence            999976

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.97  E-value=2.9e-30  Score=283.11  Aligned_cols=142  Identities=20%  Similarity=0.257  Sum_probs=125.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +.+.+.++||+|-||.|.++.-. .+..||+|+++....   +..|.+|+++|.+|+||| |+.++++|..++.+|+|+|
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeve-g~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPN-IveLvGVC~~DePicmI~E  615 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVE-GPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPN-IVELLGVCVQDDPLCMITE  615 (807)
T ss_pred             hheehhhhhcCcccceeEEEEec-CceEEEEeecCcccchhHHHHHHHHHHHHhccCCCC-eeEEEeeeecCCchHHHHH
Confidence            46789999999999999999984 469999999986543   467999999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccc
Q 004835          278 HVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVG  345 (728)
Q Consensus       278 ~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~  345 (728)
                      |+++|.+..+...     +.......|+.||+.|++||.+.++|||||-+.|+|++ .++++||+|||+++-+
T Consensus       616 YmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~-~e~~iKiadfgmsR~l  687 (807)
T KOG1094|consen  616 YMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVD-GEFTIKIADFGMSRNL  687 (807)
T ss_pred             HHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeec-CcccEEecCccccccc
Confidence            9999998877643     23455677999999999999999999999999999999 8889999999999853

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.97  E-value=2.5e-30  Score=284.74  Aligned_cols=144  Identities=25%  Similarity=0.339  Sum_probs=122.5

Q ss_pred             eEEEEecccCceEEEEEEEcCC----CeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          204 IVEEEEGSGGYGTVYRARRKND----GTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       204 ~i~~~LG~G~fG~Vy~a~~~~~----g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .+.+.||.|-||.||.|.+...    .-.||||..+.+   ...+.|..|..+++++.||+ |++++|.+. ....||||
T Consensus       392 tl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHph-IikLIGv~~-e~P~Wivm  469 (974)
T KOG4257|consen  392 TLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPH-IIKLIGVCV-EQPMWIVM  469 (974)
T ss_pred             cHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcc-hhheeeeee-ccceeEEE
Confidence            4456799999999999998533    246999998864   34667899999999999999 999999987 45789999


Q ss_pred             eccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          277 EHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       277 E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      |.++-|-|..+.+    .++......+..||+.||+|||+...|||||-..|||+. ....+||+|||+++...+..+
T Consensus       470 EL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVs-Sp~CVKLaDFGLSR~~ed~~y  546 (974)
T KOG4257|consen  470 ELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNILVS-SPQCVKLADFGLSRYLEDDAY  546 (974)
T ss_pred             ecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhheeec-Ccceeeecccchhhhccccch
Confidence            9999888777654    388888999999999999999999999999999999998 455699999999997665544

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.96  E-value=2.9e-30  Score=290.76  Aligned_cols=148  Identities=24%  Similarity=0.300  Sum_probs=133.2

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCC---eEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDG---TVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g---~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      +.....|.++||.|.||.||+|+.+..|   ..||||.++..   ..+..|+.|..||.++.||| |++|.++.......
T Consensus       627 d~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPN-IIrLEGVVTks~Pv  705 (996)
T KOG0196|consen  627 DPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPN-IIRLEGVVTKSKPV  705 (996)
T ss_pred             ChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCc-EEEEEEEEecCcee
Confidence            3456789999999999999999998776   57999999853   44567999999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhhc----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          273 CFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~~----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      .||.|||++|.|+.+++.    |...+..-+++.|+.|+.||-+++.|||||-..|||++ .+..+|++|||+++++.++
T Consensus       706 MIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVN-snLvCKVsDFGLSRvledd  784 (996)
T KOG0196|consen  706 MIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVN-SNLVCKVSDFGLSRVLEDD  784 (996)
T ss_pred             EEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeec-cceEEEeccccceeecccC
Confidence            999999999999988754    88888999999999999999999999999999999999 7788999999999986544

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=2.6e-29  Score=279.65  Aligned_cols=147  Identities=22%  Similarity=0.241  Sum_probs=125.1

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCC---eEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDG---TVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g---~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      ++-.+...+.++||+|.||.|++|.|...+   -.||||+++..   .....|.+|+.+|.+|.|++ +++||+...+ .
T Consensus       106 lIpee~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~h-liRLyGvVl~-q  183 (1039)
T KOG0199|consen  106 LIPEEQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPH-LIRLYGVVLD-Q  183 (1039)
T ss_pred             eccHHHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcc-eeEEeeeecc-c
Confidence            344567788889999999999999997543   46999999854   24567999999999999999 9999999986 7


Q ss_pred             eeEEEEeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccc
Q 004835          271 SDCFVLEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVG  345 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~  345 (728)
                      ...+|||++..|+|...++.     |.......|+.||+.|+.||-+++.|||||-..|||+-. ...+||+||||.+-+
T Consensus       184 p~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllas-prtVKI~DFGLmRaL  262 (1039)
T KOG0199|consen  184 PAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLAS-PRTVKICDFGLMRAL  262 (1039)
T ss_pred             hhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecc-cceeeeecccceecc
Confidence            78999999998876554432     667888999999999999999999999999999999984 567999999999864


Q ss_pred             c
Q 004835          346 F  346 (728)
Q Consensus       346 ~  346 (728)
                      .
T Consensus       263 g  263 (1039)
T KOG0199|consen  263 G  263 (1039)
T ss_pred             C
Confidence            3

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=6.9e-29  Score=266.32  Aligned_cols=140  Identities=22%  Similarity=0.326  Sum_probs=119.0

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHH--hcCCCCceEEecceEEeC----CeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLE--RFGGKNFIIKYEGCFKCG----DSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~--~L~h~n~Ivkl~~~~~~~----~~~~  273 (728)
                      -.+..+.+.||+|.||+||+|.|+  |+.||||++....+...| +|.+|.+  .|+|+| |+.|++.-..+    ..+|
T Consensus       210 arqI~L~e~IGkGRyGEVwrG~wr--Ge~VAVKiF~srdE~SWf-rEtEIYqTvmLRHEN-ILgFIaaD~~~~gs~TQLw  285 (513)
T KOG2052|consen  210 ARQIVLQEIIGKGRFGEVWRGRWR--GEDVAVKIFSSRDERSWF-RETEIYQTVMLRHEN-ILGFIAADNKDNGSWTQLW  285 (513)
T ss_pred             hheeEEEEEecCccccceeecccc--CCceEEEEecccchhhhh-hHHHHHHHHHhccch-hhhhhhccccCCCceEEEE
Confidence            357899999999999999999995  999999999877666544 6666665  478999 88888765433    3589


Q ss_pred             EEEeccCCCChHHHhhc--CChHHHHHHHHHHHHHHHHHHhC--------CcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          274 FVLEHVKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQ--------GIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs~--------gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      ||.+|.+.|+|.+++.+  ++.....+++.-++.||+|||..        .|.|||||..|||+. .++.+-|+|+|||-
T Consensus       286 LvTdYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVK-kn~~C~IADLGLAv  364 (513)
T KOG2052|consen  286 LVTDYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVK-KNGTCCIADLGLAV  364 (513)
T ss_pred             EeeecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEc-cCCcEEEeeceeeE
Confidence            99999999999888765  88899999999999999999953        599999999999998 77789999999996


Q ss_pred             c
Q 004835          344 V  344 (728)
Q Consensus       344 ~  344 (728)
                      .
T Consensus       365 ~  365 (513)
T KOG2052|consen  365 R  365 (513)
T ss_pred             E
Confidence            4

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.96  E-value=1.7e-29  Score=248.20  Aligned_cols=145  Identities=24%  Similarity=0.345  Sum_probs=125.0

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      -+.+..+..||+|+||.|-+.++..+|...|+|.+...   ....++.+|+.+..+....++++.+|+.+......|+.|
T Consensus        45 ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcM  124 (282)
T KOG0984|consen   45 ADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICM  124 (282)
T ss_pred             hhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeH
Confidence            34667778999999999999999999999999998743   345667889999988888888999999999899999999


Q ss_pred             eccCCCChHHHhh------cCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeeccccc
Q 004835          277 EHVKHDRPEVLKK------EIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVG  345 (728)
Q Consensus       277 E~~~~~~l~~l~~------~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~  345 (728)
                      |.|...+-..+.+      .+++..+-+|+..++.||.|||++ .|||||+||+||||+ ..+++||||||++..+
T Consensus       125 E~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn-~~GqVKiCDFGIsG~L  199 (282)
T KOG0984|consen  125 ELMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILIN-YDGQVKICDFGISGYL  199 (282)
T ss_pred             HHhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEc-cCCcEEEcccccceee
Confidence            9998765444332      278889999999999999999987 899999999999999 6678999999999753

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.96  E-value=5.2e-30  Score=284.93  Aligned_cols=142  Identities=26%  Similarity=0.395  Sum_probs=129.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ++|+++..+|.|+||.||+++++.+++..|+|+++...  .-.-++.|+-+++..+|+| |+-+++.|...+..|++|||
T Consensus        15 ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~n-ivay~gsylr~dklwicMEy   93 (829)
T KOG0576|consen   15 DDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPN-IVAYFGSYLRRDKLWICMEY   93 (829)
T ss_pred             cchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcC-hHHHHhhhhhhcCcEEEEEe
Confidence            58999999999999999999999999999999988543  3445678999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++|+++.+..   .+++.++..+.+..+.||+|||++|-+|||||-.|||++ +.+.+|++|||.+..
T Consensus        94 cgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~gk~hRdiKGanillt-d~gDvklaDfgvsaq  161 (829)
T KOG0576|consen   94 CGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLT-DEGDVKLADFGVSAQ  161 (829)
T ss_pred             cCCCcccceeeecccchhHHHHHHHhhhhccchhhhcCCcccccccccceeec-ccCceeecccCchhh
Confidence            99999988764   488899999999999999999999999999999999999 778899999999864

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.96  E-value=2.7e-29  Score=275.37  Aligned_cols=146  Identities=25%  Similarity=0.286  Sum_probs=126.7

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----------hhHHHHHHHHHHhcC---CCCceEEec
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----------KHYVSNELRMLERFG---GKNFIIKYE  263 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----------~~~~~~Ei~iL~~L~---h~n~Ivkl~  263 (728)
                      ..++.+|..++.+|.|+||.|++|.++.+...|+||.+.+++.          .-.+-.||+||..++   |+| |++++
T Consensus       557 ~~k~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~N-IlKlL  635 (772)
T KOG1152|consen  557 YKKFSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHEN-ILKLL  635 (772)
T ss_pred             ecccccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccc-hhhhh
Confidence            3467889999999999999999999999999999999876432          112457999999998   999 99999


Q ss_pred             ceEEeCCeeEEEEeccCCC-ChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEee
Q 004835          264 GCFKCGDSDCFVLEHVKHD-RPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDF  339 (728)
Q Consensus       264 ~~~~~~~~~~LV~E~~~~~-~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DF  339 (728)
                      ++|++++++||+||.-+.+ .|..++   ..+++.+++.|++|++.|+++||++||||||||-+|+.++ .++-+||+||
T Consensus       636 dfFEddd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd-~~g~~klidf  714 (772)
T KOG1152|consen  636 DFFEDDDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVD-SNGFVKLIDF  714 (772)
T ss_pred             heeecCCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccCceecccccccEEEe-cCCeEEEeec
Confidence            9999999999999987654 344443   3499999999999999999999999999999999999999 5566999999


Q ss_pred             ecccc
Q 004835          340 NLAMV  344 (728)
Q Consensus       340 GlA~~  344 (728)
                      |.|..
T Consensus       715 gsaa~  719 (772)
T KOG1152|consen  715 GSAAY  719 (772)
T ss_pred             cchhh
Confidence            99875

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.95  E-value=6.8e-27  Score=273.02  Aligned_cols=146  Identities=23%  Similarity=0.267  Sum_probs=123.0

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEc----C---CCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEE
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRK----N---DGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFK  267 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~----~---~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~  267 (728)
                      ..-++..+.+.||+|.||.||+|...    .   ....||||.++...   ..+.+..|+.++..+.++.+|+.+++++.
T Consensus       293 ~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t  372 (609)
T KOG0200|consen  293 IPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACT  372 (609)
T ss_pred             echhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeec
Confidence            33455677789999999999999743    1   14689999987543   34668899999999985545999999999


Q ss_pred             eCCeeEEEEeccCCCChHHHhh--c-----------------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK--E-----------------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS  328 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~--~-----------------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld  328 (728)
                      ..+..++|+||+..|.+..+.+  +                 +.......++.||+.|++||++.++|||||-..|||+.
T Consensus       373 ~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~  452 (609)
T KOG0200|consen  373 QDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLIT  452 (609)
T ss_pred             cCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEec
Confidence            8999999999999887765542  3                 67788999999999999999999999999999999999


Q ss_pred             cCCCceEEEeeecccc
Q 004835          329 CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       329 ~~~~~~kL~DFGlA~~  344 (728)
                       .+..+||+|||+|+.
T Consensus       453 -~~~~~kIaDFGlar~  467 (609)
T KOG0200|consen  453 -KNKVIKIADFGLARD  467 (609)
T ss_pred             -CCCEEEEccccceec
Confidence             778899999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=5.2e-28  Score=291.07  Aligned_cols=91  Identities=20%  Similarity=0.181  Sum_probs=72.8

Q ss_pred             cCCCCceEEecceEE-------eCCeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCC
Q 004835          253 FGGKNFIIKYEGCFK-------CGDSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKP  322 (728)
Q Consensus       253 L~h~n~Ivkl~~~~~-------~~~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKP  322 (728)
                      +.|.++|..++++|.       ....+++++||+++.+...+..   .+++.+++.|+.||+.||.|||++|||||||||
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlKP  108 (793)
T PLN00181         29 LSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECEDVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRP  108 (793)
T ss_pred             hhHHHHHHHhhcccCCccccccccchhhhhhccCCccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhCCeeeccCCc
Confidence            345445777777662       2346788899887765555532   388999999999999999999999999999999


Q ss_pred             CceEeecCCCceEEEeeecccc
Q 004835          323 GNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       323 eNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+ ..+.+|++|||++..
T Consensus       109 ~NiLl~-~~~~~k~~d~~~~~~  129 (793)
T PLN00181        109 SCFVMS-SFNHVSFIESASCSD  129 (793)
T ss_pred             hhEEEc-ccCcEEEeeccccCc
Confidence            999998 566799999999864

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.95  E-value=3.1e-26  Score=224.31  Aligned_cols=135  Identities=33%  Similarity=0.480  Sum_probs=121.0

Q ss_pred             ecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCChH
Q 004835          209 EGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPE  285 (728)
Q Consensus       209 LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l~  285 (728)
                      ||.|.+|.||++....+++.+++|++.....   ...+.+|+.+++.+.|++ |+++++++......++++||+.+..+.
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~-i~~~~~~~~~~~~~~~~~e~~~~~~l~   79 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPN-IVKLYGVFEDENHLYLVMEYCEGGSLK   79 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCC-eeeEeeeeecCCeEEEEEecCCCCcHH
Confidence            6899999999999987899999999887654   377889999999999987 999999999889999999999988777


Q ss_pred             HHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          286 VLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       286 ~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .+..    .+++..+..++.+++.+|.|||+.|++|+||+|.||+++..+..++|+|||.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~  142 (215)
T cd00180          80 DLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKL  142 (215)
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEE
Confidence            6653    3788999999999999999999999999999999999994267899999999874

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.94  E-value=3.2e-27  Score=266.91  Aligned_cols=141  Identities=22%  Similarity=0.262  Sum_probs=121.2

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCe----EEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGT----VVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~----~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      .....++||.|+||+||+|.+...|+    +||||++....   ....+..|.-+|.++.|+| ++++++++.... +-|
T Consensus       697 elkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpn-l~RLLgvc~~s~-~ql  774 (1177)
T KOG1025|consen  697 ELKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPN-LLRLLGVCMLST-LQL  774 (1177)
T ss_pred             hhhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCch-HHHHhhhcccch-HHH
Confidence            34556799999999999999976664    78999886543   3456889999999999999 999999998655 889


Q ss_pred             EEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccc
Q 004835          275 VLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVG  345 (728)
Q Consensus       275 V~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~  345 (728)
                      |++|++.|.|..+.+    .+.....+.|..||++|+.|||.+++|||||-..|||+. .-..+||.|||+|+.+
T Consensus       775 vtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVk-sP~hvkitdfgla~ll  848 (1177)
T KOG1025|consen  775 VTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVK-SPNHVKITDFGLAKLL  848 (1177)
T ss_pred             HHHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeec-CCCeEEEEecchhhcc
Confidence            999999998776653    377888999999999999999999999999999999998 5567999999999874

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.94  E-value=8.3e-26  Score=226.57  Aligned_cols=140  Identities=30%  Similarity=0.458  Sum_probs=125.2

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      |.+.+.||.|++|.||+|....+++.+|+|.+....   ....+.+|+..+.++.|++ ++++++++......++++||+
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~-i~~~~~~~~~~~~~~~v~e~~   79 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPN-IVKLYGVFEDPEPLYLVMEYC   79 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCC-hhhheeeeecCCceEEEEecc
Confidence            678899999999999999998889999999987653   4567889999999999988 999999999889999999999


Q ss_pred             CCCChHHHhhc----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          280 KHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       280 ~~~~l~~l~~~----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .++.+..+...    +++..+..++.+++.+|.|||.++++|+||+|.||+++ .+..++|+|||++..
T Consensus        80 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~-~~~~~~l~d~g~~~~  147 (225)
T smart00221       80 EGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENILLG-MDGLVKLADFGLARF  147 (225)
T ss_pred             CCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEc-CCCCEEEeeCceeeE
Confidence            99777666532    78889999999999999999999999999999999999 567899999999875

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.93  E-value=6.6e-27  Score=237.69  Aligned_cols=145  Identities=21%  Similarity=0.292  Sum_probs=123.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEE-ecceEEeCCeeEEEEe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIK-YEGCFKCGDSDCFVLE  277 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivk-l~~~~~~~~~~~LV~E  277 (728)
                      .+.|.|.+.||+|.||.+-+++++.+.+.+++|.+.... ....|.+|...--.|.|+.||+. +...|++.+.+++++|
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE  102 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQE  102 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeec
Confidence            468999999999999999999999999999999987653 45678899887777776665665 4556888899999999


Q ss_pred             ccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee-cCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS-CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld-~~~~~~kL~DFGlA~~  344 (728)
                      |++.|.|..-..  .+.+...+.++.|++.||.|||++++||||||.+||||- .+..++||||||+.+.
T Consensus       103 ~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k  172 (378)
T KOG1345|consen  103 FAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRK  172 (378)
T ss_pred             cCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeecccccc
Confidence            999888765443  378888999999999999999999999999999999994 5567899999999863

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.91  E-value=2e-24  Score=228.46  Aligned_cols=147  Identities=18%  Similarity=0.229  Sum_probs=117.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCC-----eEEEEEeccCcCch---hHHHHHHHHHHhcCCCCceEEecceE-EeCCe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDG-----TVVAIKCPHANASK---HYVSNELRMLERFGGKNFIIKYEGCF-KCGDS  271 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g-----~~VAIK~i~~~~~~---~~~~~Ei~iL~~L~h~n~Ivkl~~~~-~~~~~  271 (728)
                      .++++...+-+|+||.||.|.++...     +.|-+|.++.....   ..+..|.-.+..+.|+| +..+.+.. ++...
T Consensus       284 ~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~n-ll~V~~V~ie~~~~  362 (563)
T KOG1024|consen  284 CRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPN-LLSVLGVSIEDYAT  362 (563)
T ss_pred             hheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCC-ccceeEEEeeccCc
Confidence            46777888999999999999876432     45677777655443   34677888888999999 66666554 45677


Q ss_pred             eEEEEeccCCCChHHHhh-----------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeee
Q 004835          272 DCFVLEHVKHDRPEVLKK-----------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFN  340 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~-----------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFG  340 (728)
                      .++++.+.+.+.+..+..           .+...+...++.|++.|++|||++||||.||-..|.+|| +...+||+|=.
T Consensus       363 P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvId-d~LqVkltDsa  441 (563)
T KOG1024|consen  363 PFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVID-DQLQVKLTDSA  441 (563)
T ss_pred             ceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceeh-hheeEEeccch
Confidence            899999999888877653           156677888999999999999999999999999999999 88899999999


Q ss_pred             ccccccCCC
Q 004835          341 LAMVGFDGS  349 (728)
Q Consensus       341 lA~~~~~~~  349 (728)
                      +++.+...+
T Consensus       442 LSRDLFP~D  450 (563)
T KOG1024|consen  442 LSRDLFPGD  450 (563)
T ss_pred             hccccCccc
Confidence            988655443

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.91  E-value=1e-22  Score=209.50  Aligned_cols=139  Identities=30%  Similarity=0.414  Sum_probs=121.1

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      |.+...||.|+||.||++.+.   ..+|+|.+....     ....+.+|+.++..+.|++.|+.+++.+......+++++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   78 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVME   78 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec---cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEe
Confidence            788999999999999999996   889999887542     255688999999999999559999999987777899999


Q ss_pred             ccCCCChHHHhh------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++.++.+..+..      .+.......++.|++.++.|+|+.+++||||||+||+++..+..++++|||++..
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~  151 (384)
T COG0515          79 YVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKL  151 (384)
T ss_pred             cCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCccee
Confidence            999998875544      4788899999999999999999999999999999999994443799999999873

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.91  E-value=3.7e-24  Score=209.36  Aligned_cols=102  Identities=25%  Similarity=0.249  Sum_probs=71.9

Q ss_pred             cCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh--HHHHHHHHHhCCchHHHHHHhccCCCCCcchh
Q 004835          552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE--QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDL  629 (728)
Q Consensus       552 ~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~--~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~  629 (728)
                      .||+.|+|||++.+.. ++.++||||||||+|||++|+.||.....  ..+..++......              .+.  
T Consensus        65 ~g~~~y~aPE~~~~~~-~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~--------------~~~--  127 (176)
T smart00750       65 RVDPYFMAPEVIQGQS-YTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPAD--------------DPR--  127 (176)
T ss_pred             CCcccccChHHhcCCC-CcchhhHHHHHHHHHHHHhCCCCccccchhcHHHHHHHHHhccC--------------Ccc--
Confidence            3789999999996554 69999999999999999999999976433  1222222110000              000  


Q ss_pred             hcccCCCCCCchhhhhhhccCCcccccCch--hHHHHHHHhcccCCCCCCCHHHHhcCCCCcc
Q 004835          630 YAAKSLPPINLPEWCKLITKRPDFLEVIPS--SLFDLVDKCLTVNPRLRISAEDALKHEFFAP  690 (728)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~  690 (728)
                                          .......++.  .+.+||.+||..||++||++.++++|+|+..
T Consensus       128 --------------------~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~  170 (176)
T smart00750      128 --------------------DRSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRALF  170 (176)
T ss_pred             --------------------ccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHH
Confidence                                0000112233  6899999999999999999999999999764

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=3.7e-25  Score=256.58  Aligned_cols=264  Identities=22%  Similarity=0.297  Sum_probs=192.2

Q ss_pred             CCe-eEEEEecccCceEEEEEEEcCCCeEEEEEecc----CcCc-h---hHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          201 ESF-IVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH----ANAS-K---HYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       201 ~~y-~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~----~~~~-~---~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ..| ....++|.|++|.|+.+......+.++.|.+.    .... .   ..+..|+-+-..+.|++ ++..+..+.....
T Consensus       317 ~~y~~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~-~~e~l~~~~~~~~  395 (601)
T KOG0590|consen  317 EKYGKPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPN-IIETLDIVQEIDG  395 (601)
T ss_pred             cccCCccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCc-hhhhHHHHhhccc
Confidence            445 56778999999999988887777777777554    1111 1   11445777777899999 6655555555555


Q ss_pred             eEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          272 DCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      .+-+||||++++...+..  .+...++..++.|++.|+.|||+.||.||||||+|+++. .++.+||+|||.+....-..
T Consensus       396 ~~~~mE~~~~Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~-~~g~lki~Dfg~~~vf~~~~  474 (601)
T KOG0590|consen  396 ILQSMEYCPYDLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVT-ENGILKIIDFGAASVFRYPW  474 (601)
T ss_pred             chhhhhcccHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEe-cCCceEEeecCcceeeccCc
Confidence            555599999944444444  488899999999999999999999999999999999999 66689999999986410000


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       475 --------------------------------------------------------------------------------  474 (601)
T KOG0590|consen  475 --------------------------------------------------------------------------------  474 (601)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       475 --------------------------------------------------------------------------------  474 (601)
T KOG0590|consen  475 --------------------------------------------------------------------------------  474 (601)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                      ..........+|+..|+|||++.+..+-...+||||.|++++.|++|+
T Consensus       475 --------------------------------e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~  522 (601)
T KOG0590|consen  475 --------------------------------EKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGR  522 (601)
T ss_pred             --------------------------------chhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCC
Confidence                                            000011235679999999999988887778999999999999999999


Q ss_pred             CCCCCCChH-HHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          590 TPFFGDPEQ-NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       590 ~PF~~~~~~-~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      .||...... +...                                  ......|..+..........++...+.+|.+|
T Consensus       523 ~~Wk~a~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~  568 (601)
T KOG0590|consen  523 FPWKVAKKSDNSFK----------------------------------TNNYSDQRNIFEGPNRLLSLLPRETRIIIYRM  568 (601)
T ss_pred             Cccccccccccchh----------------------------------hhccccccccccChHHHHHhchhhHHHHHHHH
Confidence            999643221 1100                                  00011111222222234466788999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCccch
Q 004835          669 LTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      |++||.+|+|+++|++.+||+.+.
T Consensus       569 l~~~P~~R~ti~~i~~d~W~~~i~  592 (601)
T KOG0590|consen  569 LQLDPTKRITIEQILNDEWIRSIE  592 (601)
T ss_pred             ccCChhheecHHHHhhChHhhhcc
Confidence            999999999999999999999875

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.90  E-value=2.3e-23  Score=217.13  Aligned_cols=157  Identities=20%  Similarity=0.338  Sum_probs=137.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      -.|.++++||+|+||+++.|...-+++.||||.-.......++..|.+..+.|.+...|...|.+..++.+-.||+|+++
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLLG  107 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLLG  107 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhhC
Confidence            37999999999999999999999999999999987777778889999999999988889999999999999999999998


Q ss_pred             CCChHH---HhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC----CCceEEEeeeccccccCCCCccc
Q 004835          281 HDRPEV---LKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK----AVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       281 ~~~l~~---l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~----~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      ..+-+.   .-++|+..++..+|.|++.-++|+|++.+|.|||||+|+||...    .+.+.|+|||+|+.         
T Consensus       108 PSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~---------  178 (449)
T KOG1165|consen  108 PSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKE---------  178 (449)
T ss_pred             cCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhh---------
Confidence            765333   33679999999999999999999999999999999999999733    35688999999985         


Q ss_pred             cCCCCcCCCCCCCCCCCCc
Q 004835          354 TLPGTKYVPPVNGRKVPSA  372 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~  372 (728)
                            |+.|+..+.++..
T Consensus       179 ------YrDp~TkqHIPYr  191 (449)
T KOG1165|consen  179 ------YRDPKTKQHIPYR  191 (449)
T ss_pred             ------hcCccccccCccc
Confidence                  7777766655543

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.89  E-value=1.6e-22  Score=203.00  Aligned_cols=148  Identities=23%  Similarity=0.331  Sum_probs=131.9

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ....++|.++++||.|+||.+|+|....+|..||||+-.......++..|..+...|++...|+.+..++.+..+-.+||
T Consensus        11 ~iv~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVM   90 (341)
T KOG1163|consen   11 LIVGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVM   90 (341)
T ss_pred             heeccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeee
Confidence            34567999999999999999999999999999999998888878888999999999998888999999999999999999


Q ss_pred             eccCCCChHHH---hhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee--cCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVL---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS--CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l---~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld--~~~~~~kL~DFGlA~~  344 (728)
                      +.++..+-+.+   .+.++..+++.++-|++.-++|+|.++.|||||||+|+|..  ....++.|+|||+|+.
T Consensus        91 dLLGPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKk  163 (341)
T KOG1163|consen   91 DLLGPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKK  163 (341)
T ss_pred             eccCccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchhh
Confidence            99987653332   35699999999999999999999999999999999999986  3456788999999985

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.88  E-value=4.4e-23  Score=240.07  Aligned_cols=105  Identities=30%  Similarity=0.582  Sum_probs=86.8

Q ss_pred             CCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchh
Q 004835          550 PCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDL  629 (728)
Q Consensus       550 ~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~  629 (728)
                      ..+|||.|+||||++..+ |+..+|||++|+|+||++.|..||+|++++.++..+-              .....||+. 
T Consensus       217 qvcgTPeyiaPeVilrqg-ygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~vi--------------sd~i~wpE~-  280 (1205)
T KOG0606|consen  217 QVCGTPEYIAPEVILRQG-YGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVI--------------SDDIEWPEE-  280 (1205)
T ss_pred             cccCCccccChhhhhhhc-cCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhh--------------hhhcccccc-
Confidence            457999999999998877 6999999999999999999999999999987755431              111222221 


Q ss_pred             hcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCCC---HHHHhcCCCCccchhc
Q 004835          630 YAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRIS---AEDALKHEFFAPCHEM  694 (728)
Q Consensus       630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpt---a~e~L~Hp~f~~~~~~  694 (728)
                                              .+..++++.|||.++|..+|..|..   +-++.+|+||..+.+.
T Consensus       281 ------------------------dea~p~Ea~dli~~LL~qnp~~Rlgt~ga~evk~h~ff~~LDw~  324 (1205)
T KOG0606|consen  281 ------------------------DEALPPEAQDLIEQLLRQNPLCRLGTGGALEVKQHGFFQLLDWK  324 (1205)
T ss_pred             ------------------------CcCCCHHHHHHHHHHHHhChHhhcccchhhhhhhccceeecccc
Confidence                                    3567899999999999999999974   7788899999999887

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.87  E-value=8.5e-22  Score=215.79  Aligned_cols=165  Identities=21%  Similarity=0.226  Sum_probs=125.8

Q ss_pred             ccccCCCCCCeeEEEEecccCceEEEEEEEcC-CCeEEEEEeccCc-------CchhHHHHHHHHHHhcCCCCceEEecc
Q 004835          193 NAKVLPNFESFIVEEEEGSGGYGTVYRARRKN-DGTVVAIKCPHAN-------ASKHYVSNELRMLERFGGKNFIIKYEG  264 (728)
Q Consensus       193 ~~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~-~g~~VAIK~i~~~-------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~  264 (728)
                      .....+..++|.+.+.||+|+||+||+|++.. +++.||||++...       .....+.+|+.+|.++.|++++..+++
T Consensus        10 ~~~~~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~   89 (365)
T PRK09188         10 GDQIPALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA   89 (365)
T ss_pred             ccccccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE
Confidence            33444556789999999999999999999875 6888999986532       124458899999999999995545654


Q ss_pred             eEEeCCeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccC-CCCceEeecCCCceEEEeeeccc
Q 004835          265 CFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDV-KPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       265 ~~~~~~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDI-KPeNILld~~~~~~kL~DFGlA~  343 (728)
                      +    +..|+||||+.+++|.... ...   ...++.|++.||.|||++||+|||| ||+|||++ .++.++|+|||+|+
T Consensus        90 ~----~~~~LVmE~~~G~~L~~~~-~~~---~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~-~~~~ikLiDFGlA~  160 (365)
T PRK09188         90 T----GKDGLVRGWTEGVPLHLAR-PHG---DPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMG-PDGEAAVIDFQLAS  160 (365)
T ss_pred             c----CCcEEEEEccCCCCHHHhC-ccc---hHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEc-CCCCEEEEECccce
Confidence            3    4579999999998886332 111   2467899999999999999999999 99999998 55679999999998


Q ss_pred             cccCCCCc---------cccCCCCcCCCCCCC
Q 004835          344 VGFDGSFN---------QATLPGTKYVPPVNG  366 (728)
Q Consensus       344 ~~~~~~~~---------~~~~~~t~yipPe~~  366 (728)
                      ........         ....++..|++||..
T Consensus       161 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~  192 (365)
T PRK09188        161 VFRRRGALYRIAAYEDLRHLLKHKRTYAPDAL  192 (365)
T ss_pred             ecccCcchhhhhhhhhhhhhhccCccCCcccC
Confidence            65443211         122334457777765

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.87  E-value=5.2e-21  Score=207.09  Aligned_cols=142  Identities=24%  Similarity=0.383  Sum_probs=120.3

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCC-eEEEEEeccCcCc--hhHHHHHHHHHHhcC---CCCceEEecceE-EeCCeeEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDG-TVVAIKCPHANAS--KHYVSNELRMLERFG---GKNFIIKYEGCF-KCGDSDCF  274 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g-~~VAIK~i~~~~~--~~~~~~Ei~iL~~L~---h~n~Ivkl~~~~-~~~~~~~L  274 (728)
                      +|.+.+.||+|+||.||+|.+..++ ..+|+|+......  ...+..|+.++..+.   +..++..+++.+ ..+.+.|+
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            8999999999999999999997664 6899998765422  226788999999987   345688888888 47788999


Q ss_pred             EEeccCCCChHHHh----hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC----CceEEEeeeccc
Q 004835          275 VLEHVKHDRPEVLK----KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAM  343 (728)
Q Consensus       275 V~E~~~~~~l~~l~----~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~----~~~kL~DFGlA~  343 (728)
                      ||+.++.++.+...    +.++..++..|+.|++.+|.+||+.|+|||||||+|+++....    ..++|+|||+|+
T Consensus        99 VM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar  175 (322)
T KOG1164|consen   99 VMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR  175 (322)
T ss_pred             EEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCc
Confidence            99998887665442    4589999999999999999999999999999999999998543    568999999997

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.87  E-value=3.5e-23  Score=231.62  Aligned_cols=249  Identities=25%  Similarity=0.336  Sum_probs=196.9

Q ss_pred             EecccCceEEEEEEE---cCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          208 EEGSGGYGTVYRARR---KNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~---~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      ++|.|+||.|++++-   ...|..+|+|++++..    .......|..++..++.+.+++++..+|+.....+++++|..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            379999999998753   2457899999887432    122445688889888866669999999999999999999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCC
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG  357 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~  357 (728)
                      ++.+.....   .+.+.....+...++.|++++|..+|+|||+|++||+++ ..+.+++.|||+++...+.         
T Consensus        81 gg~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enilld-~~Ghi~~tdfglske~v~~---------  150 (612)
T KOG0603|consen   81 GGDLFTRLSKEVMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVLLL-LEGHIKLTDFGLSKEAVKE---------  150 (612)
T ss_pred             cchhhhccccCCchHHHHHHHHHHHHHHHHhhcchhHHHHhcccccceeec-ccCccccCCchhhhHhHhh---------
Confidence            977655432   267778888999999999999999999999999999999 6667999999999751100         


Q ss_pred             CcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccc
Q 004835          358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAE  437 (728)
Q Consensus       358 t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (612)
T KOG0603|consen  151 --------------------------------------------------------------------------------  150 (612)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCch
Q 004835          438 RLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLS  517 (728)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  517 (728)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (612)
T KOG0603|consen  151 --------------------------------------------------------------------------------  150 (612)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          518 DLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       518 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                                  +   ..+||.-|||||++-  ++ ..++|+||||+++++|++|..||.+   
T Consensus       151 ----------------------------~---~~cgt~eymApEI~~--gh-~~a~D~ws~gvl~felltg~~pf~~---  193 (612)
T KOG0603|consen  151 ----------------------------K---IACGTYEYRAPEIIN--GH-LSAADWWSFGVLAFELLTGTLPFGG---  193 (612)
T ss_pred             ----------------------------h---hcccchhhhhhHhhh--cc-CCcccchhhhhhHHHHhhCCCCCch---
Confidence                                        0   117999999999994  43 7899999999999999999999987   


Q ss_pred             HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC
Q 004835          598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI  677 (728)
Q Consensus       598 ~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp  677 (728)
                      +.+..|.                                           .....++...+..+.++++.++..+|..|.
T Consensus       194 ~~~~~Il-------------------------------------------~~~~~~p~~l~~~a~~~~~~l~~r~p~nrL  230 (612)
T KOG0603|consen  194 DTMKRIL-------------------------------------------KAELEMPRELSAEARSLFRQLFKRNPENRL  230 (612)
T ss_pred             HHHHHHh-------------------------------------------hhccCCchhhhHHHHHHHHHHHhhCHHHHh
Confidence            3333333                                           223445567788999999999999999998


Q ss_pred             C-----HHHHhcCCCCccchhcchHhHhhhcccc
Q 004835          678 S-----AEDALKHEFFAPCHEMLRKQKLLRQGSS  706 (728)
Q Consensus       678 t-----a~e~L~Hp~f~~~~~~~~~~~~~~~~~~  706 (728)
                      .     +.|+++|+||..+.+..-+.+-.+.++.
T Consensus       231 g~~~~~~~eik~h~f~~~i~~~~l~~r~~~~~fk  264 (612)
T KOG0603|consen  231 GAGPDGVDEIKQHEFFQSIDWNELEARSRPPPFK  264 (612)
T ss_pred             ccCcchhHHHhccchheeeeHhhHhhcCCCCCCC
Confidence            6     5799999999999988555444444443

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.81  E-value=3.9e-20  Score=185.73  Aligned_cols=133  Identities=22%  Similarity=0.234  Sum_probs=103.3

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----------h-----------------hHHHHHHHHHHhcCCCC
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----------K-----------------HYVSNELRMLERFGGKN  257 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----------~-----------------~~~~~Ei~iL~~L~h~n  257 (728)
                      ...||+|+||.||+|.+. +|+.||||+++....           .                 ....+|+.++.++.+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05147           2 NGCISTGKEANVYHATTA-NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAG   80 (190)
T ss_pred             CCccccccceEEEEEECC-CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            357999999999999997 899999999864311           0                 12235999999998765


Q ss_pred             ceEEecceEEeCCeeEEEEeccCCCChHHH-h--hcCChHHHHHHHHHHHHHHHHH-HhCCcEeccCCCCceEeecCCCc
Q 004835          258 FIIKYEGCFKCGDSDCFVLEHVKHDRPEVL-K--KEIDLSQLQWYGYCLFRALASL-HKQGIVHRDVKPGNFLFSCKAVK  333 (728)
Q Consensus       258 ~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l-~--~~l~~~~~~~i~~QIl~aL~yL-Hs~gIIHRDIKPeNILld~~~~~  333 (728)
                       +...... .. ...+|||||++++.+... .  ..++...+..++.|++.+|.|| |+.||+||||||+|||++ + +.
T Consensus        81 -v~~p~~~-~~-~~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~-~-~~  155 (190)
T cd05147          81 -IPCPEPI-LL-KSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH-D-GK  155 (190)
T ss_pred             -CCCCcEE-Ee-cCCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE-C-Cc
Confidence             3222222 11 223899999998765432 2  3488889999999999999999 799999999999999998 4 56


Q ss_pred             eEEEeeecccc
Q 004835          334 GYLIDFNLAMV  344 (728)
Q Consensus       334 ~kL~DFGlA~~  344 (728)
                      ++|+|||+|..
T Consensus       156 v~LiDFG~a~~  166 (190)
T cd05147         156 LYIIDVSQSVE  166 (190)
T ss_pred             EEEEEcccccc
Confidence            99999999974

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.80  E-value=2.9e-19  Score=178.98  Aligned_cols=134  Identities=22%  Similarity=0.257  Sum_probs=104.6

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----------------------------hhHHHHHHHHHHhcCCCC
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----------------------------KHYVSNELRMLERFGGKN  257 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----------------------------~~~~~~Ei~iL~~L~h~n  257 (728)
                      ...||+|+||.||+|.+. +|+.||||+++....                            ...+.+|+..+.++.+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05145           2 NGCISTGKEANVYHARTG-DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAG   80 (190)
T ss_pred             CceeecCCCcEEEEEEcC-CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            468999999999999987 899999999875311                            112357899999998887


Q ss_pred             ceEEecceEEeCCeeEEEEeccCCCChH-HHh--hcCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCc
Q 004835          258 FIIKYEGCFKCGDSDCFVLEHVKHDRPE-VLK--KEIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVK  333 (728)
Q Consensus       258 ~Ivkl~~~~~~~~~~~LV~E~~~~~~l~-~l~--~~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~  333 (728)
                       +.....+...  ..||||||++++.+. ...  ..++...+..++.|++.+|.+||+ +||+||||||+|||++  ++.
T Consensus        81 -i~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~--~~~  155 (190)
T cd05145          81 -VPVPEPILLK--KNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH--DGK  155 (190)
T ss_pred             -CCCceEEEec--CCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE--CCC
Confidence             4322222222  248999999987432 222  236778899999999999999999 9999999999999998  467


Q ss_pred             eEEEeeeccccc
Q 004835          334 GYLIDFNLAMVG  345 (728)
Q Consensus       334 ~kL~DFGlA~~~  345 (728)
                      ++|+|||+|...
T Consensus       156 ~~liDFG~a~~~  167 (190)
T cd05145         156 PYIIDVSQAVEL  167 (190)
T ss_pred             EEEEEcccceec
Confidence            999999999864

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.80  E-value=4.3e-19  Score=188.68  Aligned_cols=90  Identities=22%  Similarity=0.296  Sum_probs=73.5

Q ss_pred             CCCCceEEecceEEe---------------------------CCeeEEEEeccCCCChHHHhh-cCChHHHHHHHHHHHH
Q 004835          254 GGKNFIIKYEGCFKC---------------------------GDSDCFVLEHVKHDRPEVLKK-EIDLSQLQWYGYCLFR  305 (728)
Q Consensus       254 ~h~n~Ivkl~~~~~~---------------------------~~~~~LV~E~~~~~~l~~l~~-~l~~~~~~~i~~QIl~  305 (728)
                      .||| |+.+..+|.+                           +..+|+||..+...+.+.+.. ..+.....-++.|+++
T Consensus       274 ~HPN-Ivri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~tLr~yl~~~~~s~r~~~~~laQlLE  352 (598)
T KOG4158|consen  274 KHPN-IVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQTLREYLWTRHRSYRTGRVILAQLLE  352 (598)
T ss_pred             CCCC-EEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchhhHHHHHhcCCCchHHHHHHHHHHHH
Confidence            4888 9888887752                           346799999988887766653 4778888899999999


Q ss_pred             HHHHHHhCCcEeccCCCCceEeecCC---CceEEEeeecccc
Q 004835          306 ALASLHKQGIVHRDVKPGNFLFSCKA---VKGYLIDFNLAMV  344 (728)
Q Consensus       306 aL~yLHs~gIIHRDIKPeNILld~~~---~~~kL~DFGlA~~  344 (728)
                      |+.|||.+||.|||+|.+||||.-++   ..+.|+|||++--
T Consensus       353 av~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLA  394 (598)
T KOG4158|consen  353 AVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLA  394 (598)
T ss_pred             HHHHHHHccchhhcccccceEEEecCCCCcEEEEcccceeee
Confidence            99999999999999999999996433   3467899999853

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.80  E-value=3.9e-20  Score=215.74  Aligned_cols=137  Identities=24%  Similarity=0.347  Sum_probs=109.7

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc------hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS------KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~------~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      +|...+.||.+.|=.|.+|+++ .|. |+||++-+...      -.+...|++ ...+++|| ++.+.-........|||
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~-eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn-~lPfqk~~~t~kAAylv   99 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDR-EGL-VVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPN-CLPFQKVLVTDKAAYLV   99 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCC-Cce-EEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCc-ccchHHHHHhhHHHHHH
Confidence            6888999999999999999985 454 99998765431      122334555 55677888 88777777777888999


Q ss_pred             EeccCCCChHHHhhc--CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          276 LEHVKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       276 ~E~~~~~~l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      -+|+.+.+.+.+.-+  +..-+.++|+.||+.||.-+|..||+|+|||.+||||.+= +-+.|+||..-+
T Consensus       100 RqyvkhnLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSW-NW~~LtDFAsFK  168 (1431)
T KOG1240|consen  100 RQYVKHNLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSW-NWLYLTDFASFK  168 (1431)
T ss_pred             HHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeee-chhhhhcccccC
Confidence            999999888777543  6778899999999999999999999999999999999943 447899996543

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.79  E-value=6.5e-19  Score=178.24  Aligned_cols=131  Identities=20%  Similarity=0.132  Sum_probs=105.0

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc------hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS------KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~------~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +.+...|++|+||+||++..  .+..++.+.+.....      ...+.+|+++|++|.|+..|++++++    +..|++|
T Consensus         4 ~~~~~~l~~~~f~~v~~~~~--~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvm   77 (218)
T PRK12274          4 PAVNEPLKSDTFGRILLVRG--GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDR   77 (218)
T ss_pred             cccceeecCCCcceEEEeec--CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEE
Confidence            34677999999999998876  678888887764432      12478999999999876668888775    3469999


Q ss_pred             eccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccC-CCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDV-KPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDI-KPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.|..+.....   . ....++.|++.+|.++|++||+|||| ||+|||++ .++.++|+|||+|..
T Consensus        78 eyI~G~~L~~~~~---~-~~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~-~~g~i~LIDFG~A~~  141 (218)
T PRK12274         78 SYLAGAAMYQRPP---R-GDLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQ-EDGSPAVIDFQLAVR  141 (218)
T ss_pred             eeecCccHHhhhh---h-hhHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEc-CCCCEEEEECCCcee
Confidence            9999988754321   1 12457889999999999999999999 79999998 566799999999974

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.79  E-value=3.8e-19  Score=182.87  Aligned_cols=134  Identities=16%  Similarity=0.130  Sum_probs=107.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc--h---------hHHHHHHHHHHhcCCCCceEEecceEEeC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS--K---------HYVSNELRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~--~---------~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      ++|.+.++||.|+||.||++..  ++..+|||+++....  .         ..+.+|+..+.++.|++ |..+..++...
T Consensus        31 ~~y~~~~~l~~~~f~~v~l~~~--~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~G-I~~~~d~~~~~  107 (232)
T PRK10359         31 YNIKTIKVFRNIDDTKVSLIDT--DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEG-LASLNDFYLLA  107 (232)
T ss_pred             CceEEEEEecCCCceEEEEEec--CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCC-CCcceEeeeec
Confidence            5899999999999999999755  467899999874321  1         12578999999999998 77776665532


Q ss_pred             --------CeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeec
Q 004835          270 --------DSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNL  341 (728)
Q Consensus       270 --------~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGl  341 (728)
                              ...+|||||++|..+..+. .+++    ....+++.+|..||+.||+||||||+||+++ +++ ++|+|||.
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~-~~~~----~~~~~i~~~l~~lH~~gi~H~Dikp~Nili~-~~g-i~liDfg~  180 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDMP-EISE----DVKAKIKASIESLHQHGMVSGDPHKGNFIVS-KNG-LRIIDLSG  180 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHhh-hccH----HHHHHHHHHHHHHHHcCCccCCCChHHEEEe-CCC-EEEEECCC
Confidence                    3589999999998886653 2332    3466999999999999999999999999998 445 99999998


Q ss_pred             ccc
Q 004835          342 AMV  344 (728)
Q Consensus       342 A~~  344 (728)
                      ...
T Consensus       181 ~~~  183 (232)
T PRK10359        181 KRC  183 (232)
T ss_pred             ccc
Confidence            753

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.78  E-value=5.3e-19  Score=186.99  Aligned_cols=142  Identities=23%  Similarity=0.403  Sum_probs=89.2

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCC----------CCc-----eEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGG----------KNF-----IIK  261 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h----------~n~-----Ivk  261 (728)
                      .+.....||.|+++.||.+++..+|+.+|+|++....     ..+.+.+|......+.+          -.+     +++
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~   92 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLR   92 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEE
T ss_pred             EEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEE
Confidence            5678899999999999999999999999999875322     22345555433333222          011     222


Q ss_pred             ecc---eEEeCC--------eeEEEEeccCCCChHHHh---h------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCC
Q 004835          262 YEG---CFKCGD--------SDCFVLEHVKHDRPEVLK---K------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVK  321 (728)
Q Consensus       262 l~~---~~~~~~--------~~~LV~E~~~~~~l~~l~---~------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIK  321 (728)
                      +.+   ++....        ..+++|+-+.+++...+.   .      .+.......+..|+++.+++||+.||||+|||
T Consensus        93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi~  172 (288)
T PF14531_consen   93 IPGKPPFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHGDIK  172 (288)
T ss_dssp             ETTS-SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-S
T ss_pred             EcCCCcceecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceEecccc
Confidence            211   111111        236777777665533321   1      12233445667899999999999999999999


Q ss_pred             CCceEeecCCCceEEEeeecccc
Q 004835          322 PGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       322 PeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+|++++ .++.++|.||+....
T Consensus       173 ~~nfll~-~~G~v~Lg~F~~~~r  194 (288)
T PF14531_consen  173 PENFLLD-QDGGVFLGDFSSLVR  194 (288)
T ss_dssp             GGGEEE--TTS-EEE--GGGEEE
T ss_pred             eeeEEEc-CCCCEEEcChHHHee
Confidence            9999999 667899999987753

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=1.2e-18  Score=177.68  Aligned_cols=134  Identities=15%  Similarity=0.201  Sum_probs=110.1

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      ++..+.++.+|.+...|+.|+|++.  |..+++|++...    .....|..|.-.|+-+.||| |+.+++.+..+.++.+
T Consensus       188 d~~~lnl~tkl~e~hsgelwrgrwq--gndivakil~vr~~t~risrdfneefp~lrifshpn-ilpvlgacnsppnlv~  264 (448)
T KOG0195|consen  188 DVSSLNLITKLAESHSGELWRGRWQ--GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPN-ILPVLGACNSPPNLVI  264 (448)
T ss_pred             chhhhhhhhhhccCCCccccccccc--CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCc-hhhhhhhccCCCCceE
Confidence            4567788889999999999999994  667888887643    23455788888999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCC-cEe-ccCCCCceEeecCCCceEE
Q 004835          275 VLEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQG-IVH-RDVKPGNFLFSCKAVKGYL  336 (728)
Q Consensus       275 V~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~g-IIH-RDIKPeNILld~~~~~~kL  336 (728)
                      +..|++.+++..+.+.     .+..++.+++..|++|++|||+.. +|- --|....++|| ++.+++|
T Consensus       265 isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hvmid-edltari  332 (448)
T KOG0195|consen  265 ISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMID-EDLTARI  332 (448)
T ss_pred             eeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEec-chhhhhe
Confidence            9999999998887754     677899999999999999999963 333 36788889998 6555544

>PRK10345 hypothetical protein; Provisional

Probab=99.72  E-value=5.1e-17  Score=165.71  Aligned_cols=134  Identities=16%  Similarity=0.146  Sum_probs=103.1

Q ss_pred             EEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhc-----CCCCceEEecceEEeCC---e-eE
Q 004835          205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERF-----GGKNFIIKYEGCFKCGD---S-DC  273 (728)
Q Consensus       205 i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L-----~h~n~Ivkl~~~~~~~~---~-~~  273 (728)
                      -.+.||+|+||.||.  ++.++.. +||++...  .....+.+|+.++..+     .|+| |+++++++.++.   . +.
T Consensus         6 ~~~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~n-Ivr~yg~~et~~g~g~v~~   81 (210)
T PRK10345          6 EQSPLGTGRHRKCYA--HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSG-IPRYYGTVETDCGTGYVYD   81 (210)
T ss_pred             CcceecCCCceEEEE--CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcc-cceeeEEEEeCCCCeEEEE
Confidence            346899999999995  6666655 69987643  2345688999999999     5688 999999999863   4 34


Q ss_pred             EEEecc--CCCChHHHhhc--CChHHHHHHHHHHHHHH-HHHHhCCcEeccCCCCceEeecC---CCceEEEe-eecccc
Q 004835          274 FVLEHV--KHDRPEVLKKE--IDLSQLQWYGYCLFRAL-ASLHKQGIVHRDVKPGNFLFSCK---AVKGYLID-FNLAMV  344 (728)
Q Consensus       274 LV~E~~--~~~~l~~l~~~--l~~~~~~~i~~QIl~aL-~yLHs~gIIHRDIKPeNILld~~---~~~~kL~D-FGlA~~  344 (728)
                      +|+||.  .+++|..+.+.  +++.  ..++.|++.++ +|||+++||||||||+|||++..   +..++|+| ||....
T Consensus        82 ~I~e~~G~~~~tL~~~l~~~~~~e~--~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~~  159 (210)
T PRK10345         82 VIADFDGKPSITLTEFAEQCRYEED--VAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGESTF  159 (210)
T ss_pred             EEecCCCCcchhHHHHHHcccccHh--HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCcce
Confidence            789994  46788777653  3443  46688888888 99999999999999999999732   34799999 555443

>smart00090 RIO RIO-like kinase

Probab=99.72  E-value=2.4e-17  Score=171.27  Aligned_cols=137  Identities=20%  Similarity=0.197  Sum_probs=106.9

Q ss_pred             CeeEEEEecccCceEEEEEE-EcCCCeEEEEEeccCcCc--------------------------hhHHHHHHHHHHhcC
Q 004835          202 SFIVEEEEGSGGYGTVYRAR-RKNDGTVVAIKCPHANAS--------------------------KHYVSNELRMLERFG  254 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~-~~~~g~~VAIK~i~~~~~--------------------------~~~~~~Ei~iL~~L~  254 (728)
                      .|.+.+.||+|+||.||+|. +..+|+.||||+++....                          ...+.+|+.++.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            47888999999999999999 667899999998864310                          123568999999997


Q ss_pred             CCC-ceEEecceEEeCCeeEEEEeccCCCChHHHh-h--cCChHHHHHHHHHHHHHHHHHHhCC-cEeccCCCCceEeec
Q 004835          255 GKN-FIIKYEGCFKCGDSDCFVLEHVKHDRPEVLK-K--EIDLSQLQWYGYCLFRALASLHKQG-IVHRDVKPGNFLFSC  329 (728)
Q Consensus       255 h~n-~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~-~--~l~~~~~~~i~~QIl~aL~yLHs~g-IIHRDIKPeNILld~  329 (728)
                      +.. .+++++..    ...++||||++++.+.... .  .+....+..++.||+.+|.+||.+| |+||||||+||+++ 
T Consensus       109 ~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-  183 (237)
T smart00090      109 EAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNILVH-  183 (237)
T ss_pred             hcCCCCCeeeEe----cCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-
Confidence            532 13333332    2358999999997764432 2  2445567889999999999999999 99999999999998 


Q ss_pred             CCCceEEEeeecccc
Q 004835          330 KAVKGYLIDFNLAMV  344 (728)
Q Consensus       330 ~~~~~kL~DFGlA~~  344 (728)
                       ++.++|+|||.|..
T Consensus       184 -~~~i~LiDFg~a~~  197 (237)
T smart00090      184 -DGKVVIIDVSQSVE  197 (237)
T ss_pred             -CCCEEEEEChhhhc
Confidence             45799999999975

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.69  E-value=1.5e-16  Score=160.59  Aligned_cols=132  Identities=22%  Similarity=0.239  Sum_probs=108.8

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcC----------chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +.||+|++|.||+|.+  +|..|++|+.....          ....+.+|+.++..+.|++ |.....++......++||
T Consensus         2 ~~l~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~-i~~p~~~~~~~~~~~lv~   78 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAG-VNVPAVYFVDPENFIIVM   78 (211)
T ss_pred             cccccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCeEEEEeCCCCEEEE
Confidence            4789999999999998  67889999755321          1234678999999998887 555555555667889999


Q ss_pred             eccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||++|..+..+...... ....++.+++.+|.+||..|++|||++|.|||++  ++.++|+|||++..
T Consensus        79 e~~~G~~L~~~~~~~~~-~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~--~~~~~liDf~~a~~  143 (211)
T PRK14879         79 EYIEGEPLKDLINSNGM-EELELSREIGRLVGKLHSAGIIHGDLTTSNMILS--GGKIYLIDFGLAEF  143 (211)
T ss_pred             EEeCCcCHHHHHHhccH-HHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE--CCCEEEEECCcccC
Confidence            99999998877655444 7889999999999999999999999999999998  45689999999875

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=9e-17  Score=191.20  Aligned_cols=143  Identities=28%  Similarity=0.421  Sum_probs=113.1

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcC--CCCceEEecceEEeCCeeEEEEe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFG--GKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~--h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      -..|.|.+.||+|+||.||+|.... |+.||||+-+.....+. .--.+++.+|+  --+-|+.+..++...+..+||+|
T Consensus       697 ~~~~~I~~e~G~g~y~~vy~a~~~~-~~~~alK~e~P~~~WEf-YI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~e  774 (974)
T KOG1166|consen  697 GEKFCISKEIGEGSYGSVYVATHSN-GKLVALKVEKPPNPWEF-YICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSE  774 (974)
T ss_pred             ceeEEEEeeeccccceEEEEeecCC-CcEEEEEeecCCCceee-eehHHHHHhhchhhhcchHHHHHHHccCCcceeeee
Confidence            4689999999999999999999976 99999998765433221 11233444444  01126667777777788899999


Q ss_pred             ccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec------CCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC------KAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~------~~~~~kL~DFGlA~~  344 (728)
                      |.+.|++-.+..   .+++..+..++.|++.-+..||..+|||+||||+|+||..      +..-++|+|||.+..
T Consensus       775 y~~~Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siD  850 (974)
T KOG1166|consen  775 YSPYGTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSID  850 (974)
T ss_pred             ccccccHHHhhccCCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEeccccee
Confidence            999988877764   3889999999999999999999999999999999999962      234578999999864

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.67  E-value=2.3e-16  Score=158.64  Aligned_cols=133  Identities=20%  Similarity=0.190  Sum_probs=105.2

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC------------------------chhHHHHHHHHHHhcCCCC-
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA------------------------SKHYVSNELRMLERFGGKN-  257 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~------------------------~~~~~~~Ei~iL~~L~h~n-  257 (728)
                      |.+.+.||.|+||.||+|... +|+.||||++....                        ....+.+|+.++..+.+.+ 
T Consensus        17 ~~~~~~i~~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   95 (198)
T cd05144          17 ESLGNQIGVGKESDVYLALDP-DGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF   95 (198)
T ss_pred             hhcCCccccCcceEEEEEEcC-CCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC
Confidence            777889999999999999885 79999999865321                        0112567889999987764 


Q ss_pred             ceEEecceEEeCCeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEE
Q 004835          258 FIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLI  337 (728)
Q Consensus       258 ~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~  337 (728)
                      .++..++    ....++||||+++..+..+...   .....++.+++.++.++|..||+||||||+||+++ +++.++|+
T Consensus        96 ~v~~~~~----~~~~~lv~e~~~g~~L~~~~~~---~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~-~~~~~~li  167 (198)
T cd05144          96 PVPKPID----WNRHAVVMEYIDGVELYRVRVL---EDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVD-DDEKIYII  167 (198)
T ss_pred             CCCceee----cCCceEEEEEeCCcchhhcccc---ccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEc-CCCcEEEE
Confidence            1343333    2455899999999887655321   44667889999999999999999999999999998 57789999


Q ss_pred             eeecccc
Q 004835          338 DFNLAMV  344 (728)
Q Consensus       338 DFGlA~~  344 (728)
                      |||++..
T Consensus       168 Dfg~~~~  174 (198)
T cd05144         168 DWPQMVS  174 (198)
T ss_pred             ECCcccc
Confidence            9999964

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.65  E-value=7.2e-16  Score=154.37  Aligned_cols=128  Identities=24%  Similarity=0.213  Sum_probs=100.8

Q ss_pred             EecccCceEEEEEEEcCCCeEEEEEeccCcC----------chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANA----------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      .||+|+||.||+|.+  +|..|++|+.....          ...++.+|+.++..+.|++ +.....++......++|||
T Consensus         1 ~ig~G~~~~vy~~~~--~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~-i~~p~~~~~~~~~~~lv~e   77 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF--LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAG-VNTPVVYDVDPDNKTIVME   77 (199)
T ss_pred             CCCCCceEEEEEeec--CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCEEEEE
Confidence            379999999999996  67889999854321          1245678999999998876 3333333445667799999


Q ss_pred             ccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++|..+..+......    .++.+++.+|.+||+.|++|||++|+||+++  ++.++++|||++..
T Consensus        78 ~~~g~~l~~~~~~~~~----~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~--~~~~~liDfg~a~~  138 (199)
T TIGR03724        78 YIEGKPLKDVIEEGND----ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR--DDKLYLIDFGLGKY  138 (199)
T ss_pred             EECCccHHHHHhhcHH----HHHHHHHHHHHHHHHCCeecCCCCcceEEEE--CCcEEEEECCCCcC
Confidence            9999888765433111    7899999999999999999999999999998  46799999999875

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.63  E-value=1.9e-15  Score=174.73  Aligned_cols=134  Identities=20%  Similarity=0.166  Sum_probs=105.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEecc-Cc-C--------chhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH-AN-A--------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~-~~-~--------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      ..|...+.||+|+||+||+|.+..  ..+++|+.. .. .        ...++.+|+.++..+.|++ ++....++....
T Consensus       333 ~~~~~~~~iG~G~~g~Vy~~~~~~--~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~-i~~p~~~~~~~~  409 (535)
T PRK09605        333 RRKIPDHLIGKGAEADIKKGEYLG--RDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAG-VPTPVIYDVDPE  409 (535)
T ss_pred             cccCccceeccCCcEEEEEEeecC--ccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccC-CCeeEEEEEeCC
Confidence            345678899999999999999853  344444321 11 1        1245788999999999998 655555555667


Q ss_pred             eeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          271 SDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..++||||++++.+..+..     ....++.|++.+|.|||+.||+||||||+|||++  ++.++|+|||+++.
T Consensus       410 ~~~lv~E~~~g~~L~~~l~-----~~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl~--~~~~~liDFGla~~  476 (535)
T PRK09605        410 EKTIVMEYIGGKDLKDVLE-----GNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIVR--DDRLYLIDFGLGKY  476 (535)
T ss_pred             CCEEEEEecCCCcHHHHHH-----HHHHHHHHHHHHHHHHHhCCCccCCCChHHEEEE--CCcEEEEeCccccc
Confidence            7899999999998876654     4577899999999999999999999999999994  45689999999986

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=3.6e-17  Score=190.15  Aligned_cols=142  Identities=20%  Similarity=0.202  Sum_probs=114.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEc-CCCeEEEEEeccCcC----chhHHHHHHHHHHhcC-CCCceEEecceEEeCCeeEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRK-NDGTVVAIKCPHANA----SKHYVSNELRMLERFG-GKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~-~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      ..|.+.+.||+|+|+.|-+.... .+...+|+|.+....    .......|..+-..+. |.| ++.+++........++
T Consensus        20 ~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n-~~~~~~~~~~~~~~~~   98 (601)
T KOG0590|consen   20 SQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSN-TVHMIEPSSSPRSYLL   98 (601)
T ss_pred             ccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCcccccccccccccc-ccccCCccCCCccccc
Confidence            46888899999999999988774 334567777665432    2233445777777777 777 9999999999999999


Q ss_pred             EEeccCCCChHHHh-h----cCChHHHHHHHHHHHHHHHHHH-hCCcEeccCCCCceEeecCCC-ceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLK-K----EIDLSQLQWYGYCLFRALASLH-KQGIVHRDVKPGNFLFSCKAV-KGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~-~----~l~~~~~~~i~~QIl~aL~yLH-s~gIIHRDIKPeNILld~~~~-~~kL~DFGlA~~  344 (728)
                      +++|..++.+.... .    ..+...+..++.|+..+|.|+| ..++.||||||+|.+++ ..+ .++++|||+|..
T Consensus        99 ~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~-~s~~~l~~~df~~At~  174 (601)
T KOG0590|consen   99 SLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLD-ESGSALKIADFGLATA  174 (601)
T ss_pred             ccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccchhc-cCCCcccCCCchhhcc
Confidence            99998887765544 2    3567788999999999999999 99999999999999999 444 789999999964

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.61  E-value=2.6e-16  Score=173.86  Aligned_cols=139  Identities=21%  Similarity=0.190  Sum_probs=91.5

Q ss_pred             CeeEEEEecccCceEEEEEEEcCC---CeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEec------ceEE---
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKND---GTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYE------GCFK---  267 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~---g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~------~~~~---  267 (728)
                      .+.+.+..+..+++.++......+   ...++-+.....  .......+++..+....|++..+...      ..+.   
T Consensus       245 s~~~~k~~~~~~~~~~~~~q~~~~~s~~E~~~s~~~~~d~~~~~~~~~r~~~~l~~~~~~~~s~~~d~~~s~~~~~~~~~  324 (516)
T KOG1033|consen  245 SSSISKSSERVSSGIVFEKQGKNNSSLREWLKSKRADVDSLCACKYTFRQLGVLVDSSHSNRSILEDLRPSLFESSKRNK  324 (516)
T ss_pred             cccccccccccccCCchhhhhcccchhhhhccchhhhccchhhhhhhhhhhhheeccccCCcccccCCCCchhhhccccc
Confidence            455555666666666665544332   233333332221  12233445666666666666332221      1111   


Q ss_pred             --eCCeeEEEEeccCCCChHHHhh------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEee
Q 004835          268 --CGDSDCFVLEHVKHDRPEVLKK------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDF  339 (728)
Q Consensus       268 --~~~~~~LV~E~~~~~~l~~l~~------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DF  339 (728)
                        ...++||.|++|.-..+..++.      ..++...+.++.|++.|+.|   +|.+|||+||.||++. .+..+||.||
T Consensus       325 v~~~~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~~ihrdlkp~nif~~-~d~q~kIgDF  400 (516)
T KOG1033|consen  325 VGKKVYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KGLIHRDLKPSNIFFS-DDDQLKIGDF  400 (516)
T ss_pred             cccccchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---ccchhhhccccccccc-cchhhhhhhh
Confidence              1236899999999988887763      25677889999999999999   9999999999999998 6667999999


Q ss_pred             ecccc
Q 004835          340 NLAMV  344 (728)
Q Consensus       340 GlA~~  344 (728)
                      |+...
T Consensus       401 gl~ts  405 (516)
T KOG1033|consen  401 GLVTS  405 (516)
T ss_pred             hheee
Confidence            99753

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.59  E-value=3.5e-15  Score=147.76  Aligned_cols=132  Identities=26%  Similarity=0.302  Sum_probs=95.8

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----hhH---------------------HHHHHHHHHhcCCCC-c
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHY---------------------VSNELRMLERFGGKN-F  258 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----~~~---------------------~~~Ei~iL~~L~h~n-~  258 (728)
                      .+.||+|+||+||+|.+. +|+.||||++.....     ...                     ...|...+..+.+.. .
T Consensus         2 ~~~lg~G~~g~Vy~a~~~-~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~   80 (187)
T cd05119           2 GGPIGTGKEADVYLALDG-DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVP   80 (187)
T ss_pred             CcccccccceeEEEEECC-CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCC
Confidence            457999999999999986 799999998764311     110                     135666666665442 1


Q ss_pred             eEEecceEEeCCeeEEEEeccCCCChH-HHhhcCCh-HHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCceE
Q 004835          259 IIKYEGCFKCGDSDCFVLEHVKHDRPE-VLKKEIDL-SQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVKGY  335 (728)
Q Consensus       259 Ivkl~~~~~~~~~~~LV~E~~~~~~l~-~l~~~l~~-~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~~k  335 (728)
                      +.+.+++    ...++||||++++.+. ........ ..+..++.+++.++.++|. .||+||||||+||+++  ++.++
T Consensus        81 ~~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~--~~~~~  154 (187)
T cd05119          81 VPKPIDL----NRHVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD--DGKVY  154 (187)
T ss_pred             CCceEec----CCCEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE--CCcEE
Confidence            3333332    2469999999984321 11111112 6788899999999999999 9999999999999998  56799


Q ss_pred             EEeeecccc
Q 004835          336 LIDFNLAMV  344 (728)
Q Consensus       336 L~DFGlA~~  344 (728)
                      |+|||.+..
T Consensus       155 liDfg~a~~  163 (187)
T cd05119         155 IIDVPQAVE  163 (187)
T ss_pred             EEECccccc
Confidence            999999975

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.58  E-value=1.1e-14  Score=136.23  Aligned_cols=133  Identities=18%  Similarity=0.144  Sum_probs=111.6

Q ss_pred             EEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCC-CceEEecceEEeCCeeEEEEeccCCCC
Q 004835          205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGK-NFIIKYEGCFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       205 i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~-n~Ivkl~~~~~~~~~~~LV~E~~~~~~  283 (728)
                      +.+.||.|.++.||++...  +..+++|..........+.+|+.++..+.+. ..+++++.++...+..+++|||+.+..
T Consensus         2 ~~~~i~~g~~~~v~~~~~~--~~~~~iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~   79 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTK--DEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGET   79 (155)
T ss_pred             cceecccccccceEEEEec--CCeEEEEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCee
Confidence            4578999999999999984  4789999987654455688999999999875 338888888877788999999999877


Q ss_pred             hHHHhhcCChHHHHHHHHHHHHHHHHHHhC---CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          284 PEVLKKEIDLSQLQWYGYCLFRALASLHKQ---GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       284 l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~---gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +..+    +......++.+++.+|++||..   +++|+||+|+|||++ +.+.++++|||.+..
T Consensus        80 ~~~~----~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~-~~~~~~l~Df~~~~~  138 (155)
T cd05120          80 LDEV----SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVD-DGKILGIIDWEYAGY  138 (155)
T ss_pred             cccC----CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEE-CCcEEEEEecccccC
Confidence            6543    5566778899999999999985   799999999999999 567799999999875

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.56  E-value=2.5e-15  Score=176.03  Aligned_cols=303  Identities=20%  Similarity=0.263  Sum_probs=204.4

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ...+.+.+.+-+-.|.++.++.+.-..+|...++|+.....     ..+....+-.++-...+| .++.....+......
T Consensus       801 sS~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P-~v~~~~~s~~~rsP~  879 (1205)
T KOG0606|consen  801 SSPDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSP-AVVRSFPSFPCRSPL  879 (1205)
T ss_pred             CCCccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCC-ceecccCCCCCCCCc
Confidence            35678999999999999999999988888777777654221     111122222222222233 366666666677889


Q ss_pred             EEEEeccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      +||++|+.++.+...++.   .+..-++.+...+..+++|||...++|||++|.|+|+. ..+..++.|||+.....   
T Consensus       880 ~L~~~~~~~~~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~-~~gh~~l~~~~t~~~vg---  955 (1205)
T KOG0606|consen  880 PLVGHYLNGGDLPSKLHNSGCLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIA-YDGHRPLTDFGTLSKVG---  955 (1205)
T ss_pred             chhhHHhccCCchhhhhcCCCcccccccchhHHHHhhhhccccchhhcccccccchhhc-ccCCcccCccccccccc---
Confidence            999999998777665543   45566777888899999999999999999999999998 66778999999654311   


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                .++|....+-+                   .+.         ....+++.                    
T Consensus       956 ----------~~~p~~~~sg~-------------------~~~---------~~~~~~~~--------------------  977 (1205)
T KOG0606|consen  956 ----------LIPPTTDLSGP-------------------SSS---------GTPRRLSR--------------------  977 (1205)
T ss_pred             ----------cccCcCCcccc-------------------ccc---------Cccccccc--------------------
Confidence                      11111100000                   000         00000000                    


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                      ..++..                                                          
T Consensus       978 ----------------~~~~~~----------------------------------------------------------  983 (1205)
T KOG0606|consen  978 ----------------SERRPQ----------------------------------------------------------  983 (1205)
T ss_pred             ----------------cccccc----------------------------------------------------------
Confidence                            000000                                                          


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                    +...........+||+.|.|||.+++..+ +.++|||++|++++|.++|.
T Consensus       984 ------------------------------l~~~~~~~~~~~~~t~~~laPe~~lg~~h-gs~ad~~~~g~~l~e~l~g~ 1032 (1205)
T KOG0606|consen  984 ------------------------------LSADEARRKHAVVGTPDYLAPEILLGRRH-GSAADWWSSGVCLFEVLTGI 1032 (1205)
T ss_pred             ------------------------------cccchhhccccccCCCcccCCcccccccC-CCcchhhhhhhhhhhhhcCC
Confidence                                          00001122345679999999999998887 89999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          590 TPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       590 ~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      +||.....+++++-+              .++...||                         ..+...++.+.+++.++|
T Consensus      1033 pp~na~tpq~~f~ni--------------~~~~~~~p-------------------------~g~~~~s~~aq~~~~~ll 1073 (1205)
T KOG0606|consen 1033 PPFNAETPQQIFENI--------------LNRDIPWP-------------------------EGPEEGSYEAQDLINRLL 1073 (1205)
T ss_pred             CCCCCcchhhhhhcc--------------ccCCCCCC-------------------------CCccccChhhhhhhhhhh
Confidence            999998887765422              22222222                         334567899999999999


Q ss_pred             ccCCCCCCCHH---HHhcCCCCccchhcchHhHhhhccccc
Q 004835          670 TVNPRLRISAE---DALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       670 ~~dP~~Rpta~---e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      ..+|.+|..|.   ++-.|+||+++.+....-..+.+-++.
T Consensus      1074 ~~~~~qr~~a~~~~e~k~~~~~~~~~~~~l~~q~~~~~p~~ 1114 (1205)
T KOG0606|consen 1074 TEEPTQRLGAKGAAEVKGHPFFQDVDWENLALQKAEFVPQP 1114 (1205)
T ss_pred             ccCchhccCcccccccccCCccCCCCccccccccCccCCCC
Confidence            99999999977   888999999999765554444444443

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.52  E-value=8.7e-14  Score=144.82  Aligned_cols=133  Identities=19%  Similarity=0.242  Sum_probs=97.6

Q ss_pred             EEec-ccCceEEEEEEEcCCCeEEEEEeccCc---------------CchhHHHHHHHHHHhcCCCCc-eEEecceEEe-
Q 004835          207 EEEG-SGGYGTVYRARRKNDGTVVAIKCPHAN---------------ASKHYVSNELRMLERFGGKNF-IIKYEGCFKC-  268 (728)
Q Consensus       207 ~~LG-~G~fG~Vy~a~~~~~g~~VAIK~i~~~---------------~~~~~~~~Ei~iL~~L~h~n~-Ivkl~~~~~~-  268 (728)
                      ..|| .|+.|+||.+..  .+..++||.+...               ....++.+|+.++.+|.|+++ ++..+++... 
T Consensus        37 ~~lg~~~g~gtv~~v~~--~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQT--PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             ceeecCCCCccEEEEEe--CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            3577 788888888877  4788999977421               122457789999999988763 3555554332 


Q ss_pred             CC---eeEEEEeccCC-CChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          269 GD---SDCFVLEHVKH-DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       269 ~~---~~~LV~E~~~~-~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..   ..++|||++++ .++..+.......  ...+.||+.+|.+||++||+||||||+|||++ .++.++|+|||.+..
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~~l~--~~~~~~i~~~l~~lH~~GI~HrDlkp~NILv~-~~~~v~LIDfg~~~~  191 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQEAPLS--EEQWQAIGQLIARFHDAGVYHADLNAHNILLD-PDGKFWLIDFDRGEL  191 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhcCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCchhEEEc-CCCCEEEEECCCccc
Confidence            22   23599999997 5676655432211  12367899999999999999999999999998 455799999999976

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.48  E-value=1.3e-13  Score=154.80  Aligned_cols=92  Identities=21%  Similarity=0.198  Sum_probs=82.5

Q ss_pred             HhcCCCCceEEecceEEeCCeeEEEEeccCCCChHHHhhc----CChHHHHHHHHHHHHHHHHHHhCCc-EeccCCCCce
Q 004835          251 ERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHKQGI-VHRDVKPGNF  325 (728)
Q Consensus       251 ~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~~~----l~~~~~~~i~~QIl~aL~yLHs~gI-IHRDIKPeNI  325 (728)
                      +.+.|.| +.++++.+.++...++|.+||..|++..+...    +++.....+++.|+.||+|||.-.| .|+.+++.|.
T Consensus         2 ~~l~h~n-~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nC   80 (484)
T KOG1023|consen    2 RQLDHDN-LNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNC   80 (484)
T ss_pred             cccchhh-hhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccc
Confidence            4678999 99999999999999999999999998877643    7777888899999999999998766 9999999999


Q ss_pred             EeecCCCceEEEeeecccc
Q 004835          326 LFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       326 Lld~~~~~~kL~DFGlA~~  344 (728)
                      ++| ....+||+|||+..+
T Consensus        81 lvd-~~w~lklt~~Gl~~~   98 (484)
T KOG1023|consen   81 LVD-SRWVLKLTDFGLNSL   98 (484)
T ss_pred             eee-eeEEEEechhhhccc
Confidence            999 778899999999865

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.35  E-value=3.9e-12  Score=123.52  Aligned_cols=128  Identities=17%  Similarity=0.133  Sum_probs=98.4

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCCh
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRP  284 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l  284 (728)
                      ++.|+.|.++.||+++.  .+..|++|+..... ....+.+|+.++..+.+...+++++.+.  ....++||||+++..+
T Consensus         3 ~~~l~~G~~~~vy~~~~--~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l   78 (170)
T cd05151           3 ISPLKGGMTNKNYRVEV--ANKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSEL   78 (170)
T ss_pred             eeecCCcccCceEEEEE--CCeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCcc
Confidence            46789999999999997  48889999876543 2334678999999987666455665543  3345899999999876


Q ss_pred             HHHhhcCChHHHHHHHHHHHHHHHHHHhCCc-----EeccCCCCceEeecCCCceEEEeeecccc
Q 004835          285 EVLKKEIDLSQLQWYGYCLFRALASLHKQGI-----VHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       285 ~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gI-----IHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ...  .   .....++.+++.+|+.||..++     +|+|++|.||+++ + ..++++|||.+..
T Consensus        79 ~~~--~---~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~-~~~~liDf~~a~~  136 (170)
T cd05151          79 LTE--D---FSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-D-GRLWLIDWEYAGM  136 (170)
T ss_pred             ccc--c---ccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-C-CeEEEEecccccC
Confidence            432  1   1123467899999999999885     9999999999998 4 4689999999875

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=2e-12  Score=145.57  Aligned_cols=145  Identities=19%  Similarity=0.177  Sum_probs=114.9

Q ss_pred             CeeEEEEecc--cCceEEEEEEE--cCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          202 SFIVEEEEGS--GGYGTVYRARR--KNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       202 ~y~i~~~LG~--G~fG~Vy~a~~--~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+.+...+|.  |.+|.||.+..  ..++..+|+|.-+..    .....-.+|+....++..+...++.+..+...+..|
T Consensus       115 ~~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lf  194 (524)
T KOG0601|consen  115 RFPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILF  194 (524)
T ss_pred             hcccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCcce
Confidence            5667778899  99999999998  888999999974321    222333467766666664433888888899999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHH----HHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccccc
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFR----ALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGF  346 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~----aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~  346 (728)
                      +-+|++...+......   .++...++.++.+...    ||.++|+.+|+|-|+||+||++..+....+++|||+...+.
T Consensus       195 iqtE~~~~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~  274 (524)
T KOG0601|consen  195 IQTELCGESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTDFGLVSKIS  274 (524)
T ss_pred             eeeccccchhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCCcceeEEcc
Confidence            9999999665554432   2778888889999888    99999999999999999999998454778999999987543

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.27  E-value=2.3e-11  Score=137.29  Aligned_cols=136  Identities=20%  Similarity=0.181  Sum_probs=92.9

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCch------------------------------------------hHHH
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK------------------------------------------HYVS  244 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~------------------------------------------~~~~  244 (728)
                      +.||.|++|.||+|+.. +|+.||||+.+.....                                          -.+.
T Consensus       123 ~plasaSigQVh~A~l~-~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       123 KPLAAASIAQVHRARLV-DGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             cceeeeehhheEEEEec-CCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            57999999999999985 7999999987643100                                          0123


Q ss_pred             HHHHHHHhc----CCCCceEEecceEEeCCeeEEEEeccCCCChHHHhhc--CChHHHHHHHHHHHH-HHHHHHhCCcEe
Q 004835          245 NELRMLERF----GGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE--IDLSQLQWYGYCLFR-ALASLHKQGIVH  317 (728)
Q Consensus       245 ~Ei~iL~~L----~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~~~--l~~~~~~~i~~QIl~-aL~yLHs~gIIH  317 (728)
                      +|...+.++    .+.+.+....-+.......+|||||++|..+..+...  ... ....++..++. .+..+|..|++|
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~-~~~~ia~~~~~~~l~ql~~~g~~H  280 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGL-DRKALAENLARSFLNQVLRDGFFH  280 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCCcee
Confidence            444444443    2333233222222223457999999999887655321  111 23456666665 478899999999


Q ss_pred             ccCCCCceEeecCCCceEEEeeeccccc
Q 004835          318 RDVKPGNFLFSCKAVKGYLIDFNLAMVG  345 (728)
Q Consensus       318 RDIKPeNILld~~~~~~kL~DFGlA~~~  345 (728)
                      +|+||.||+++ +++.++|+|||++...
T Consensus       281 ~D~hPgNilv~-~~g~i~liDfG~~~~l  307 (437)
T TIGR01982       281 ADLHPGNIFVL-KDGKIIALDFGIVGRL  307 (437)
T ss_pred             CCCCcccEEEC-CCCcEEEEeCCCeeEC
Confidence            99999999998 6678999999999764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.20  E-value=1.3e-11  Score=141.75  Aligned_cols=136  Identities=16%  Similarity=0.217  Sum_probs=88.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc------------------------------------hhH-
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS------------------------------------KHY-  242 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~------------------------------------~~~-  242 (728)
                      +..|+. +.||.|++|.||+|+.+.+|+.||||+.+....                                    ... 
T Consensus       119 F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l  197 (537)
T PRK04750        119 FDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTL  197 (537)
T ss_pred             HHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence            456776 789999999999999987799999999874310                                    011 


Q ss_pred             -----HHHHHHHHHhcC----CCCc--eEEecceEEeCCeeEEEEeccCCCChHHHh---h-c-----CChHHHHHHHHH
Q 004835          243 -----VSNELRMLERFG----GKNF--IIKYEGCFKCGDSDCFVLEHVKHDRPEVLK---K-E-----IDLSQLQWYGYC  302 (728)
Q Consensus       243 -----~~~Ei~iL~~L~----h~n~--Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~---~-~-----l~~~~~~~i~~Q  302 (728)
                           +.+|...+.++.    +.+.  |.+++.  ......+|||||+.|..+..+.   . .     +....+..++.|
T Consensus       198 ~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~--d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Q  275 (537)
T PRK04750        198 HDELDLMREAANASQLRRNFEDSDMLYVPEVYW--DYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQ  275 (537)
T ss_pred             HHhhCHHHHHHHHHHHHHHccCCCCeecceeec--ccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                 233443333332    3331  222222  2245678999999998876532   1 1     222223333333


Q ss_pred             HHHHHHHHHhCCcEeccCCCCceEeecCC---CceEEEeeeccccc
Q 004835          303 LFRALASLHKQGIVHRDVKPGNFLFSCKA---VKGYLIDFNLAMVG  345 (728)
Q Consensus       303 Il~aL~yLHs~gIIHRDIKPeNILld~~~---~~~kL~DFGlA~~~  345 (728)
                             ++..|++|+|+||.||+++.++   +.++++|||++...
T Consensus       276 -------if~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l  314 (537)
T PRK04750        276 -------VFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSL  314 (537)
T ss_pred             -------HHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEEC
Confidence                   4568999999999999998443   27999999998764

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.16  E-value=1.8e-10  Score=116.30  Aligned_cols=131  Identities=18%  Similarity=0.215  Sum_probs=96.4

Q ss_pred             EEecccCceEEEEEEEcC------CCeEEEEEeccCc-------------C----------c-hh----HHHHHHHHHHh
Q 004835          207 EEEGSGGYGTVYRARRKN------DGTVVAIKCPHAN-------------A----------S-KH----YVSNELRMLER  252 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~------~g~~VAIK~i~~~-------------~----------~-~~----~~~~Ei~iL~~  252 (728)
                      ..||.|.-+.||.|....      .+..+|||+.+..             .          . ..    ...+|+..|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            478999999999998653      3579999986521             0          0 11    13479999998


Q ss_pred             cCCC--CceEEecceEEeCCeeEEEEeccCCCCh-HHHhh--cCChHHHHHHHHHHHHHHHHH-HhCCcEeccCCCCceE
Q 004835          253 FGGK--NFIIKYEGCFKCGDSDCFVLEHVKHDRP-EVLKK--EIDLSQLQWYGYCLFRALASL-HKQGIVHRDVKPGNFL  326 (728)
Q Consensus       253 L~h~--n~Ivkl~~~~~~~~~~~LV~E~~~~~~l-~~l~~--~l~~~~~~~i~~QIl~aL~yL-Hs~gIIHRDIKPeNIL  326 (728)
                      +...  + +++.+++    ..-+|||||++++.+ ....+  .++......+..+++.+|..| |..||||+||++.|||
T Consensus        83 l~~~Gv~-vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDLs~~NIL  157 (197)
T cd05146          83 MQKAGIP-CPEVVVL----KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKECNLVHADLSEYNML  157 (197)
T ss_pred             HHHcCCC-CCeEEEe----cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE
Confidence            8653  3 5566654    456899999987532 11222  244556677889999999998 8999999999999999


Q ss_pred             eecCCCceEEEeeecccc
Q 004835          327 FSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       327 ld~~~~~~kL~DFGlA~~  344 (728)
                      ++ + +.++|+|||.|..
T Consensus       158 ~~-~-~~v~iIDF~qav~  173 (197)
T cd05146         158 WH-D-GKVWFIDVSQSVE  173 (197)
T ss_pred             EE-C-CcEEEEECCCcee
Confidence            97 3 4689999998864

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.15  E-value=3.6e-11  Score=135.54  Aligned_cols=144  Identities=18%  Similarity=0.214  Sum_probs=112.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEc-CCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRK-NDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~-~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +.+|..+..||.|.|+.|+.+..+ .++..|++|-+....    ....-..|+.+...+.-+.+++.++..+......|+
T Consensus       264 ~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~i  343 (524)
T KOG0601|consen  264 LTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYI  343 (524)
T ss_pred             cCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccC
Confidence            568999999999999999998766 678899999765431    122234566665555533337777777777778889


Q ss_pred             EEeccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          275 VLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       275 V~E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      -.|||.+++.....   ..+.+...+.+..|++.++.++|++.++|+|+||+||++.++++..++.|||++.
T Consensus       344 p~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t  415 (524)
T KOG0601|consen  344 PLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWT  415 (524)
T ss_pred             chhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccchhhhcccccccceeeccchhhhhcccccccc
Confidence            99999987765433   3378889999999999999999999999999999999998655667788888874

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.11  E-value=9.4e-10  Score=125.48  Aligned_cols=121  Identities=19%  Similarity=0.222  Sum_probs=102.4

Q ss_pred             EEEEcCCCeEEEEEeccCcCc--hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCChHHHhhcCChHHH
Q 004835          219 RARRKNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL  296 (728)
Q Consensus       219 ~a~~~~~g~~VAIK~i~~~~~--~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~~~l~~~~~  296 (728)
                      .|..+.++.+|.|........  .....+-+.-|+.++||+ |++++.++...+..|||+|.+..  +....+.+....+
T Consensus        30 ~~t~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~-Il~yL~t~e~~~~~ylvTErV~P--l~~~lk~l~~~~v  106 (690)
T KOG1243|consen   30 DGTRKADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPN-ILSYLDTTEEEGTLYLVTERVRP--LETVLKELGKEEV  106 (690)
T ss_pred             ccceeccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCch-hhhhhhhhcccCceEEEeecccc--HHHHHHHhHHHHH
Confidence            466777888999988775544  344667788999999999 99999999999999999998875  5555566677788


Q ss_pred             HHHHHHHHHHHHHHH-hCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          297 QWYGYCLFRALASLH-KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       297 ~~i~~QIl~aL~yLH-s~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      ...+.||+.||.||| +.+++|++|.-+.|+|+ ..+..||.+|-++.
T Consensus       107 ~~Gl~qIl~AL~FL~~d~~lvHgNv~~~SVfVn-~~GeWkLggle~v~  153 (690)
T KOG1243|consen  107 CLGLFQILAALSFLNDDCNLVHGNVCKDSVFVN-ESGEWKLGGLELVS  153 (690)
T ss_pred             HHHHHHHHHHHHHHhccCCeeeccEeeeeEEEc-CCCcEEEeeeEEEe
Confidence            899999999999998 56899999999999999 77789999998875

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=99.03  E-value=1.5e-09  Score=109.51  Aligned_cols=137  Identities=24%  Similarity=0.323  Sum_probs=102.0

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCc-eEEecceEEeC---CeeEEEEecc
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNF-IIKYEGCFKCG---DSDCFVLEHV  279 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~-Ivkl~~~~~~~---~~~~LV~E~~  279 (728)
                      +.|+.|.++.||++... +|+.+++|+.....   ....+.+|+.++..+.+... +++++.+....   +..++||||+
T Consensus         4 ~~l~~G~~n~~~~v~~~-~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i   82 (223)
T cd05154           4 RQLSGGQSNLTYLLTAG-GGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERV   82 (223)
T ss_pred             eecCCCccceEEEEEec-CCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEe
Confidence            57899999999999874 36899999976543   24567899999999976432 45555555443   3668999999


Q ss_pred             CCCChHHHh--hcCChHHHHHHHHHHHHHHHHHHh---------------------------------------------
Q 004835          280 KHDRPEVLK--KEIDLSQLQWYGYCLFRALASLHK---------------------------------------------  312 (728)
Q Consensus       280 ~~~~l~~l~--~~l~~~~~~~i~~QIl~aL~yLHs---------------------------------------------  312 (728)
                      +|..+....  ..++......++.+++.+|.+||+                                             
T Consensus        83 ~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (223)
T cd05154          83 DGRVLRDRLLRPELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLR  162 (223)
T ss_pred             CCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence            987665433  235666667777777777777773                                             


Q ss_pred             -----------CCcEeccCCCCceEeecC-CCceEEEeeecccc
Q 004835          313 -----------QGIVHRDVKPGNFLFSCK-AVKGYLIDFNLAMV  344 (728)
Q Consensus       313 -----------~gIIHRDIKPeNILld~~-~~~~kL~DFGlA~~  344 (728)
                                 ..++|+|++|.|||++.+ +..+.|+||+.+..
T Consensus       163 ~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         163 WLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             HHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                       246999999999999842 45578999999875

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.98  E-value=1.9e-09  Score=106.62  Aligned_cols=128  Identities=21%  Similarity=0.191  Sum_probs=94.0

Q ss_pred             EecccCceEEEEEEEcCCCeEEEEEec-cCc---------CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          208 EEGSGGYGTVYRARRKNDGTVVAIKCP-HAN---------ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~~g~~VAIK~i-~~~---------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      .+++|+-+.+|.+.+.  |..+++|.= .+.         -...+..+|..++.++..-- |....-++.+.....|+||
T Consensus         3 ~i~~GAEa~i~~~~~~--g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~G-V~~P~v~dvD~~~~~I~me   79 (204)
T COG3642           3 LIKQGAEAIIYLTDFL--GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAG-VPVPIVYDVDPDNGLIVME   79 (204)
T ss_pred             hhhCCcceeEEeeecc--CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCeEEEEcCCCCEEEEE
Confidence            5789999999999773  556777752 211         11345678999998876443 3333334456777889999


Q ss_pred             ccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++|..+.......    ...++..+-.-+.-||..||||+||.++||++. .+ .+.++|||++.+
T Consensus        80 ~I~G~~lkd~l~~~----~~~~~r~vG~~vg~lH~~givHGDLTtsNiIl~-~~-~i~~IDfGLg~~  140 (204)
T COG3642          80 YIEGELLKDALEEA----RPDLLREVGRLVGKLHKAGIVHGDLTTSNIILS-GG-RIYFIDFGLGEF  140 (204)
T ss_pred             EeCChhHHHHHHhc----chHHHHHHHHHHHHHHhcCeecCCCccceEEEe-CC-cEEEEECCcccc
Confidence            99999987655433    245566666777889999999999999999997 33 389999999986

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.97  E-value=2.4e-09  Score=105.46  Aligned_cols=137  Identities=20%  Similarity=0.191  Sum_probs=99.9

Q ss_pred             EEEEecccCceEEEEEEEcCCCeEEEEEeccCc----------CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----------ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       205 i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      ....|-+|+-+.|+++.+  .|+.+.||.-...          -...+..+|.++|.++.--. |.-..-+|.+...-+|
T Consensus        11 ~l~likQGAEArv~~~~~--~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~G-I~~P~l~~~D~~~~~i   87 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF--SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALG-IPAPRLIFIDTYGGQI   87 (229)
T ss_pred             cceeeeccceeeEeeecc--CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEecCCCeE
Confidence            567889999999999999  6899999853211          12456778999998876433 3222233555666789


Q ss_pred             EEeccCCC-ChHHHh-hc---CChHH-HHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCce--EEEeeecccc
Q 004835          275 VLEHVKHD-RPEVLK-KE---IDLSQ-LQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKG--YLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~-~l~~l~-~~---l~~~~-~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~--kL~DFGlA~~  344 (728)
                      +|||+++. ....+. ..   -..+. ...++..|-+.|.-||..+|||+||..+||+|.+++..+  .++|||++..
T Consensus        88 ~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~  165 (229)
T KOG3087|consen   88 YMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSV  165 (229)
T ss_pred             EEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchhc
Confidence            99999883 333332 22   12222 367888888999999999999999999999998777665  8999999875

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.85  E-value=1.6e-08  Score=101.69  Aligned_cols=122  Identities=27%  Similarity=0.316  Sum_probs=82.6

Q ss_pred             EEEEEEEcCCCeEEEEEeccCc---------------C-------------chhHHHHHHHHHHhcCCCC-ceEEecceE
Q 004835          216 TVYRARRKNDGTVVAIKCPHAN---------------A-------------SKHYVSNELRMLERFGGKN-FIIKYEGCF  266 (728)
Q Consensus       216 ~Vy~a~~~~~g~~VAIK~i~~~---------------~-------------~~~~~~~Ei~iL~~L~h~n-~Ivkl~~~~  266 (728)
                      .||.|... +|..+|||+.+..               .             ......+|...|.++.... .+++.+.+.
T Consensus         1 ~Vy~~~~~-~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~   79 (188)
T PF01163_consen    1 DVYHAIDP-DGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN   79 (188)
T ss_dssp             EEEEEEEC-TTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE
T ss_pred             CEEEEECC-CCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe
Confidence            38999984 6889999986521               0             0124678999999998764 266666442


Q ss_pred             EeCCeeEEEEeccC--CCChHHHhhc-CChHHHHHHHHHHHHHHHH-HHhCCcEeccCCCCceEeecCCCceEEEeeecc
Q 004835          267 KCGDSDCFVLEHVK--HDRPEVLKKE-IDLSQLQWYGYCLFRALAS-LHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       267 ~~~~~~~LV~E~~~--~~~l~~l~~~-l~~~~~~~i~~QIl~aL~y-LHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                          .-+|||||++  |..+..+... +.......++.+++..+.. +|..||||+||.+.|||++ ++ .+.|+|||.+
T Consensus        80 ----~~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~NIlv~-~~-~~~iIDf~qa  153 (188)
T PF01163_consen   80 ----RNVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEYNILVD-DG-KVYIIDFGQA  153 (188)
T ss_dssp             ----TTEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STTSEEEE-TT-CEEE--GTTE
T ss_pred             ----CCEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHHHhcCceecCCChhhEEee-cc-eEEEEecCcc
Confidence                3479999999  6555444332 2345667788888886555 5799999999999999998 54 7999999998


Q ss_pred             cc
Q 004835          343 MV  344 (728)
Q Consensus       343 ~~  344 (728)
                      ..
T Consensus       154 v~  155 (188)
T PF01163_consen  154 VD  155 (188)
T ss_dssp             EE
T ss_pred             ee
Confidence            64

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.82  E-value=6.2e-08  Score=102.69  Aligned_cols=127  Identities=17%  Similarity=0.118  Sum_probs=90.3

Q ss_pred             EEEEEEEcCCCeEEEEEeccCcCc-------------hhHHHHHHHHHHhcCCCCc-eEEecceEEe-----CCeeEEEE
Q 004835          216 TVYRARRKNDGTVVAIKCPHANAS-------------KHYVSNELRMLERFGGKNF-IIKYEGCFKC-----GDSDCFVL  276 (728)
Q Consensus       216 ~Vy~a~~~~~g~~VAIK~i~~~~~-------------~~~~~~Ei~iL~~L~h~n~-Ivkl~~~~~~-----~~~~~LV~  276 (728)
                      .|+++..  .|+.|.||.......             ...+.+|...+.+|....+ ++...+++..     ....+||+
T Consensus        37 rvvr~~~--~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVt  114 (268)
T PRK15123         37 RTLRFEL--AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIIT  114 (268)
T ss_pred             eEEEEEE--CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEE
Confidence            3666655  578899996543221             1146789888887743321 3344444432     23578999


Q ss_pred             eccCCC-ChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec------CCCceEEEeeecccc
Q 004835          277 EHVKHD-RPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC------KAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~-~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~------~~~~~kL~DFGlA~~  344 (728)
                      |++++. ++..+..     ..+......++.+++..+.-||..||+|+|+++.|||++.      ++..+.|+||+.+..
T Consensus       115 e~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        115 EDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             eeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            999986 5665543     2445677789999999999999999999999999999984      246789999999864

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.79  E-value=8.6e-09  Score=108.85  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=68.7

Q ss_pred             HHHHhcCCCCceEEecceEEeCC-----eeEEEEeccCCCChHHHhhc-------CChHHHHHHHHHHHHHHHHHHhC--
Q 004835          248 RMLERFGGKNFIIKYEGCFKCGD-----SDCFVLEHVKHDRPEVLKKE-------IDLSQLQWYGYCLFRALASLHKQ--  313 (728)
Q Consensus       248 ~iL~~L~h~n~Ivkl~~~~~~~~-----~~~LV~E~~~~~~l~~l~~~-------l~~~~~~~i~~QIl~aL~yLHs~--  313 (728)
                      .-|-.+.|.| |++++.++.+..     ...++.||+..+.+..++++       +....-+++.-||+.||.|||+.  
T Consensus       119 dnllqlvHsn-lvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~P  197 (458)
T KOG1266|consen  119 DNLLQLVHSN-LVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDP  197 (458)
T ss_pred             HHHHHHHHHH-HHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCC
Confidence            3455666888 999988876543     47899999999988776543       66777788999999999999987  


Q ss_pred             CcEeccCCCCceEeecCCCceE
Q 004835          314 GIVHRDVKPGNFLFSCKAVKGY  335 (728)
Q Consensus       314 gIIHRDIKPeNILld~~~~~~k  335 (728)
                      -|+|+++...-|++. .++-+|
T Consensus       198 piihgnlTc~tifiq-~ngLIk  218 (458)
T KOG1266|consen  198 PIIHGNLTCDTIFIQ-HNGLIK  218 (458)
T ss_pred             ccccCCcchhheeec-CCceEE
Confidence            699999999999998 555333

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.63  E-value=2e-08  Score=115.16  Aligned_cols=100  Identities=21%  Similarity=0.249  Sum_probs=71.6

Q ss_pred             CCCcccchhhhccCCCCCchhHHHHHHHHHHHh-cCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcc
Q 004835          554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM-IGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAA  632 (728)
Q Consensus       554 T~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl-tG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  632 (728)
                      ...|.|||++.+ ...++++|++|+||.+|.+. .|...|.+........+....+                        
T Consensus       172 ~~~f~apE~~~~-~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~~------------------------  226 (700)
T KOG2137|consen  172 HLNFLAPEYLLG-TTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNLL------------------------  226 (700)
T ss_pred             Ccccccchhhcc-ccccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhccc------------------------
Confidence            446999999976 45699999999999999999 5665554432221211111111                        


Q ss_pred             cCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccch
Q 004835          633 KSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                            +        .....+...+|.++++=|.++|..++.-||++.+++..|||.+..
T Consensus       227 ------~--------~~~~~~s~~~p~el~~~l~k~l~~~~~~rp~~~~l~~~~ff~D~~  272 (700)
T KOG2137|consen  227 ------N--------AGAFGYSNNLPSELRESLKKLLNGDSAVRPTLDLLLSIPFFSDPG  272 (700)
T ss_pred             ------c--------cccccccccCcHHHHHHHHHHhcCCcccCcchhhhhcccccCCch
Confidence                  0        011122357899999999999999999999999999999999754

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.45  E-value=7.4e-07  Score=93.17  Aligned_cols=133  Identities=21%  Similarity=0.215  Sum_probs=97.5

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc------------------------CchhHHHHHHHHHHhcCCC-C
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN------------------------ASKHYVSNELRMLERFGGK-N  257 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~------------------------~~~~~~~~Ei~iL~~L~h~-n  257 (728)
                      +.++..||-|.-+.||.|.+. .|..+|||.-+..                        .......+|.++|++|... -
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~-~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~  171 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDP-KGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGV  171 (304)
T ss_pred             HhhccccccCccceEEEEECC-CCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCC
Confidence            456789999999999999996 7999999964310                        0112357899999999755 1


Q ss_pred             ceEEecceEEeCCeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEE
Q 004835          258 FIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLI  337 (728)
Q Consensus       258 ~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~  337 (728)
                      .+++.+++    +.-++||||+.|-.|..+.  ++......++..|++-+.-+-..||||+|+.+=|||++ +++.+.++
T Consensus       172 ~VP~P~~~----nRHaVvMe~ieG~eL~~~r--~~~en~~~il~~il~~~~~~~~~GiVHGDlSefNIlV~-~dg~~~vI  244 (304)
T COG0478         172 KVPKPIAW----NRHAVVMEYIEGVELYRLR--LDVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVT-EDGDIVVI  244 (304)
T ss_pred             CCCCcccc----ccceeeeehcccceeeccc--CcccCHHHHHHHHHHHHHHHHHcCccccCCchheEEEe-cCCCEEEE
Confidence            26666654    4568999999996654432  23444555666666666666689999999999999999 66678999


Q ss_pred             eeeccc
Q 004835          338 DFNLAM  343 (728)
Q Consensus       338 DFGlA~  343 (728)
                      ||--+.
T Consensus       245 DwPQ~v  250 (304)
T COG0478         245 DWPQAV  250 (304)
T ss_pred             eCcccc
Confidence            996553

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.45  E-value=3.4e-06  Score=92.21  Aligned_cols=128  Identities=23%  Similarity=0.271  Sum_probs=81.8

Q ss_pred             EEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEe-cce-------EEeCCeeEEEE
Q 004835          205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKY-EGC-------FKCGDSDCFVL  276 (728)
Q Consensus       205 i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl-~~~-------~~~~~~~~LV~  276 (728)
                      ....||+|+.+.+|-.-..   ...+.|+++......+. .-+..|......+ .+.+ +.+       -..+...-+.|
T Consensus        15 ~gr~LgqGgea~ly~l~e~---~d~VAKIYh~Pppa~~a-qk~a~la~~p~~p-~~~~rvaWPqa~L~G~~~~~~iGflm   89 (637)
T COG4248          15 PGRPLGQGGEADLYTLGEV---RDQVAKIYHAPPPAAQA-QKVAELAATPDAP-LLNYRVAWPQATLHGGRRGKVIGFLM   89 (637)
T ss_pred             CCccccCCccceeeecchh---hchhheeecCCCchHHH-HHHHHhccCCCCc-chhhhhcccHHHhhCCCccceeEEec
Confidence            3567999999999965432   23466877754332221 1222233322222 2222 111       11233467888


Q ss_pred             eccCCCCh-HHHh------h---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEe
Q 004835          277 EHVKHDRP-EVLK------K---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLID  338 (728)
Q Consensus       277 E~~~~~~l-~~l~------~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~D  338 (728)
                      ..+.+... ..+.      +   ...|...++.++.|+.+.+-||..|.+-+|+.++|+|++ ++..+.|+|
T Consensus        90 P~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVs-d~~~V~LVd  160 (637)
T COG4248          90 PKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVS-DDSKVVLVD  160 (637)
T ss_pred             ccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcCCcccccCccceeee-cCceEEEEc
Confidence            88776422 1111      1   267899999999999999999999999999999999998 777788876

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.41  E-value=2.2e-06  Score=87.29  Aligned_cols=105  Identities=24%  Similarity=0.256  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHHHhcCCCCc-eEEecceEEeC----CeeEEEEeccCCC-ChHHHhhc---CChHHHHHHHHHHHHHHHHH
Q 004835          240 KHYVSNELRMLERFGGKNF-IIKYEGCFKCG----DSDCFVLEHVKHD-RPEVLKKE---IDLSQLQWYGYCLFRALASL  310 (728)
Q Consensus       240 ~~~~~~Ei~iL~~L~h~n~-Ivkl~~~~~~~----~~~~LV~E~~~~~-~l~~l~~~---l~~~~~~~i~~QIl~aL~yL  310 (728)
                      .....+|...+..|....+ ++..+++....    ...+||+|++++. .+..+...   .+......++.+++..++-|
T Consensus        55 ~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~l~~~i~~l  134 (206)
T PF06293_consen   55 RSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRALARLIAKL  134 (206)
T ss_pred             chHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Confidence            3457788887777653321 34444444432    2458999999984 56666543   56677889999999999999


Q ss_pred             HhCCcEeccCCCCceEeecCC--CceEEEeeecccc
Q 004835          311 HKQGIVHRDVKPGNFLFSCKA--VKGYLIDFNLAMV  344 (728)
Q Consensus       311 Hs~gIIHRDIKPeNILld~~~--~~~kL~DFGlA~~  344 (728)
                      |..||+|+|+++.|||++.++  ..+.|+||+-++.
T Consensus       135 H~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  135 HDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             HHCcCCCCCCCcccEEEeCCCCceeEEEEcchhcee
Confidence            999999999999999998443  3688999998875

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.32  E-value=6.1e-06  Score=85.39  Aligned_cols=132  Identities=16%  Similarity=0.123  Sum_probs=86.8

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCc-eEEecceEEeCCeeEEEEeccCCCC-h
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNF-IIKYEGCFKCGDSDCFVLEHVKHDR-P  284 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~-Ivkl~~~~~~~~~~~LV~E~~~~~~-l  284 (728)
                      ..||.|..+.||+.    .|..+++|..........+.+|.+++..+..... +.+.+++...++...+|||++.|.. .
T Consensus         7 ~~i~~G~t~~~y~~----~~~~~VlR~~~~~~~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~~~   82 (226)
T TIGR02172         7 TQTGEGGNGESYTH----KTGKWMLKLYNPGFDKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKRSF   82 (226)
T ss_pred             eeecCCCCcceeEe----cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCccch
Confidence            57899999999983    2556889998776666678899999998875443 5777777777778899999999952 1


Q ss_pred             HH-----------H----------hhcC-----ChHH-HHHHHHH----------HHH-HHHHHHh----CCcEeccCCC
Q 004835          285 EV-----------L----------KKEI-----DLSQ-LQWYGYC----------LFR-ALASLHK----QGIVHRDVKP  322 (728)
Q Consensus       285 ~~-----------l----------~~~l-----~~~~-~~~i~~Q----------Il~-aL~yLHs----~gIIHRDIKP  322 (728)
                      ..           +          .+.+     .... ...+..+          +.. ...+|..    ..++|+|+.|
T Consensus        83 ~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~HgD~~~  162 (226)
T TIGR02172        83 SRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTSTFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLHGDFQI  162 (226)
T ss_pred             hhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEecCCCC
Confidence            10           0          0111     1000 0011000          111 1222321    2478999999


Q ss_pred             CceEeecCCCceEEEeeecccc
Q 004835          323 GNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       323 eNILld~~~~~~kL~DFGlA~~  344 (728)
                      .||+++ +++ +.|+||+.+..
T Consensus       163 ~Nii~~-~~~-~~iIDwe~a~~  182 (226)
T TIGR02172       163 GNLITS-GKG-TYWIDLGDFGY  182 (226)
T ss_pred             CcEEEc-CCC-cEEEechhcCc
Confidence            999998 444 88999999865

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=98.21  E-value=5.1e-06  Score=81.98  Aligned_cols=132  Identities=21%  Similarity=0.262  Sum_probs=96.8

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCC
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH  281 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~  281 (728)
                      ...+.+.|++|++|.||+|.+  .|..+|+|+-+.+.....+..|.++|..+.....-.+++.+-.    .++.|||+.|
T Consensus        23 ~~~v~~~L~KG~~s~Vyl~~~--~~~~~a~Kvrr~ds~r~~l~kEakiLeil~g~~~~p~vy~yg~----~~i~me~i~G   96 (201)
T COG2112          23 ELRVEKELAKGTTSVVYLGEW--RGGEVALKVRRRDSPRRNLEKEAKILEILAGEGVTPEVYFYGE----DFIRMEYIDG   96 (201)
T ss_pred             hhhhhhhhhcccccEEEEeec--cCceEEEEEecCCcchhhHHHHHHHHHHhhhcCCCceEEEech----hhhhhhhhcC
Confidence            345667899999999999999  4779999998888888899999999999998886666665533    3456999999


Q ss_pred             CChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCC-CCceEeecCCCceEEEeeecccc
Q 004835          282 DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVK-PGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       282 ~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIK-PeNILld~~~~~~kL~DFGlA~~  344 (728)
                      -.+.......+...    ...++++---|-..||-|..|. |..++|. ....+.|+||.-|.+
T Consensus        97 ~~L~~~~~~~~rk~----l~~vlE~a~~LD~~GI~H~El~~~~k~vlv-~~~~~~iIDFd~At~  155 (201)
T COG2112          97 RPLGKLEIGGDRKH----LLRVLEKAYKLDRLGIEHGELSRPWKNVLV-NDRDVYIIDFDSATF  155 (201)
T ss_pred             cchhhhhhcccHHH----HHHHHHHHHHHHHhccchhhhcCCceeEEe-cCCcEEEEEccchhh
Confidence            77655443332222    2334445334667899999995 5544454 333789999999875

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=98.17  E-value=1.3e-05  Score=81.10  Aligned_cols=137  Identities=17%  Similarity=0.151  Sum_probs=82.4

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCc-eEEecceEE---eCCeeEEEEeccCC
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNF-IIKYEGCFK---CGDSDCFVLEHVKH  281 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~-Ivkl~~~~~---~~~~~~LV~E~~~~  281 (728)
                      ++.|+.|..+.||++....  ..+++|+.........+.+|..+++.+..... ++.++....   .....+++|+++++
T Consensus         2 i~~l~~G~~n~~~~v~~~~--~~~vlK~~~~~~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~g   79 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD--GRYVLKFYRPPDAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIPG   79 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT--SEEEEEEESSHHHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEESS
T ss_pred             CccCCCCCeeeEEEEEECC--cEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEecc
Confidence            4689999999999999853  59999997666445667789888888765432 556665332   23457999999998


Q ss_pred             CChHH---------H-------h---hcC-------ChHH---------HHHH------------HHHHHH-HHHHHH--
Q 004835          282 DRPEV---------L-------K---KEI-------DLSQ---------LQWY------------GYCLFR-ALASLH--  311 (728)
Q Consensus       282 ~~l~~---------l-------~---~~l-------~~~~---------~~~i------------~~QIl~-aL~yLH--  311 (728)
                      ..+..         +       .   +..       ....         ....            ...+.. .+..++  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (239)
T PF01636_consen   80 RPLDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQELEAL  159 (239)
T ss_dssp             EEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHHHHHHhh
Confidence            76555         0       0   001       0000         0000            011222 233333  


Q ss_pred             -----hCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          312 -----KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       312 -----s~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                           ...++|+|+.|.|||++..++.+.|+||+.+..
T Consensus       160 ~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~~  197 (239)
T PF01636_consen  160 LPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAGW  197 (239)
T ss_dssp             HHCCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-EE
T ss_pred             hccCCCcEEEEeccccccceeeeccceeEEEecccceE
Confidence                 246999999999999994445557999998865

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.16  E-value=2.7e-05  Score=79.94  Aligned_cols=135  Identities=19%  Similarity=0.174  Sum_probs=89.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCch-----------hHHHHHHHHHHhcCCCC--ceEEecceE-
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK-----------HYVSNELRMLERFGGKN--FIIKYEGCF-  266 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~-----------~~~~~Ei~iL~~L~h~n--~Ivkl~~~~-  266 (728)
                      .+|.+.+++-......|.+-..  +|+.+++|..+.....           ....+++..+.++....  .+..++.+. 
T Consensus        31 ~~~~~~kv~k~~~r~~ValIei--~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~e  108 (229)
T PF06176_consen   31 NNYKIIKVFKNTKRNYVALIEI--DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAE  108 (229)
T ss_pred             CCceEEEeecCCCccEEEEEEE--CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeee
Confidence            4788999998888888888776  6899999987643211           11233444444442211  122222221 


Q ss_pred             ----EeCCeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecc
Q 004835          267 ----KCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       267 ----~~~~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                          .-....++||||++|-.+..+.. +++    .++..|.+++.-||..|++|+|..|.|++++ ++ .++++||+..
T Consensus       109 kk~~~~~~~~~ll~EYIeG~~l~d~~~-i~e----~~~~ki~~~ikqlH~~G~~HGD~hpgNFlv~-~~-~i~iID~~~k  181 (229)
T PF06176_consen  109 KKIFRYTSSYVLLMEYIEGVELNDIED-IDE----DLAEKIVEAIKQLHKHGFYHGDPHPGNFLVS-NN-GIRIIDTQGK  181 (229)
T ss_pred             eeeccceeEEEEEEEEecCeecccchh-cCH----HHHHHHHHHHHHHHHcCCccCCCCcCcEEEE-CC-cEEEEECccc
Confidence                12245678999999976644321 222    2455677889999999999999999999998 44 3889999887


Q ss_pred             cc
Q 004835          343 MV  344 (728)
Q Consensus       343 ~~  344 (728)
                      +.
T Consensus       182 ~~  183 (229)
T PF06176_consen  182 RM  183 (229)
T ss_pred             cc
Confidence            64

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.04  E-value=3.7e-05  Score=79.77  Aligned_cols=75  Identities=16%  Similarity=0.083  Sum_probs=53.7

Q ss_pred             EecccCc-eEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCChH
Q 004835          208 EEGSGGY-GTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPE  285 (728)
Q Consensus       208 ~LG~G~f-G~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l~  285 (728)
                      .|..|.+ +.||+....  +..+.||+..... ...+.+|+.++..+...-.+++++++...++..++|||+++|..+.
T Consensus         5 ~~~~g~~~~~v~~~~~~--~~~~~vk~~~~~~-~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~   80 (244)
T cd05150           5 RVTEGQSGATVYRLDGK--NPGLYLKIAPSGP-TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAA   80 (244)
T ss_pred             ecCCCCCcCeEEEEcCC--CCcEEEEecCCCc-ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHh
Confidence            3445555 789999763  4688999876543 3456789999888864333677888777667789999999986554

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PRK09902 hypothetical protein; Provisional

Probab=98.04  E-value=5.5e-05  Score=77.28  Aligned_cols=132  Identities=11%  Similarity=0.017  Sum_probs=94.4

Q ss_pred             cccCceEEEEEEEcCCCeEEEEEeccC--------cCchhHHHHHHHHHHhcCCCCc-eEEecceEE---eC--CeeEEE
Q 004835          210 GSGGYGTVYRARRKNDGTVVAIKCPHA--------NASKHYVSNELRMLERFGGKNF-IIKYEGCFK---CG--DSDCFV  275 (728)
Q Consensus       210 G~G~fG~Vy~a~~~~~g~~VAIK~i~~--------~~~~~~~~~Ei~iL~~L~h~n~-Ivkl~~~~~---~~--~~~~LV  275 (728)
                      |+||-+-|++...  .|+.+-+|....        ......|.+|+..|.+|..... +++.. ++.   .+  -..+||
T Consensus        27 ~rgG~SgV~r~~~--~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~~rA~LV  103 (216)
T PRK09902         27 RRNGMSGVQCVER--NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGEWRALLV  103 (216)
T ss_pred             CCCCcceEEEEEe--CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCceEEEEE
Confidence            6788889999876  456788886541        1234568899999998875431 33333 222   11  246899


Q ss_pred             EeccCC-CChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC-CceEEEeeecccc
Q 004835          276 LEHVKH-DRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~-~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~-~~~kL~DFGlA~~  344 (728)
                      +|-+++ .+|..+..     ..+......++.+++..|+-||..|+.|+|+-+.|||++.++ ..+.++||.-++.
T Consensus       104 Te~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        104 TEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             EEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            998875 34554432     245666788999999999999999999999999999997333 3489999988764

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.02  E-value=4.1e-05  Score=85.93  Aligned_cols=130  Identities=16%  Similarity=0.162  Sum_probs=99.9

Q ss_pred             CceEEEEEEEcCCCeEEEEEeccCcCc--hhHHHHHHHHHHhcCCCCceEEecceEEe----CCeeEEEEeccCCC-Ch-
Q 004835          213 GYGTVYRARRKNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEGCFKC----GDSDCFVLEHVKHD-RP-  284 (728)
Q Consensus       213 ~fG~Vy~a~~~~~g~~VAIK~i~~~~~--~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~----~~~~~LV~E~~~~~-~l-  284 (728)
                      --.+.|++....+|..|++|.++..+.  ......-+++++++.|.| +|++..+|.+    ...+++|++|+++. +| 
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~N-vV~frevf~t~tF~D~SlvlvYDYyP~s~TL~  366 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTN-VVPFREVFLTYTFGDLSLVLVYDYYPSSPTLY  366 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCc-eeehhhhhhhhccCcceEEEEEecCCCCchHH
Confidence            345789999999999999999854322  222334578999999999 9999988873    34689999999864 22 


Q ss_pred             HHHh-----------------hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          285 EVLK-----------------KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       285 ~~l~-----------------~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.+.                 ...++..++.|+.|+..||.++|+.|..-+=|.|.+||++ .+.+++|..-|+..+
T Consensus       367 d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck~L~~~kIlv~-G~~RIriS~C~i~Dv  442 (655)
T KOG3741|consen  367 DLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACKTLDLKKILVT-GKMRIRISGCGIMDV  442 (655)
T ss_pred             HHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceeecccHhHeEee-CcceEEEecccceee
Confidence            2221                 1256788999999999999999999999999999999998 444677765555544

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=98.00  E-value=7.8e-05  Score=75.64  Aligned_cols=124  Identities=28%  Similarity=0.356  Sum_probs=90.1

Q ss_pred             CCeeEEEEecccCc-eEEEEEEEcCCCeEEEEEeccC--------------c---------CchhHHHHHHHHHHhcCCC
Q 004835          201 ESFIVEEEEGSGGY-GTVYRARRKNDGTVVAIKCPHA--------------N---------ASKHYVSNELRMLERFGGK  256 (728)
Q Consensus       201 ~~y~i~~~LG~G~f-G~Vy~a~~~~~g~~VAIK~i~~--------------~---------~~~~~~~~Ei~iL~~L~h~  256 (728)
                      .+++.++.||.|.. |.||+++.  +|+.||||++..              .         ....-|..|.+...+|...
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I--~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~  114 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEI--DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEA  114 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEE--CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhc
Confidence            68999999999999 99999999  689999998321              0         0012367888887777644


Q ss_pred             Cc----eEEecceEEeC------------------CeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCC
Q 004835          257 NF----IIKYEGCFKCG------------------DSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQG  314 (728)
Q Consensus       257 n~----Ivkl~~~~~~~------------------~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~g  314 (728)
                      +.    -++.+++..-.                  ....||.||+....      .+.    ..-+.+|.+-|..+|..|
T Consensus       115 ~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~------~~~----~~~~~~~~~dl~~~~k~g  184 (207)
T PF13095_consen  115 GREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP------PLQ----IRDIPQMLRDLKILHKLG  184 (207)
T ss_pred             cccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc------ccc----hhHHHHHHHHHHHHHHCC
Confidence            32    48888887321                  12467788776654      111    223566778889999999


Q ss_pred             cEeccCCCCceEeecCCCceEEEeeecc
Q 004835          315 IVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       315 IIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                      |+-+|+++.|.. +     .+|+|||.+
T Consensus       185 I~~~Dv~~~ny~-~-----G~lvDfs~~  206 (207)
T PF13095_consen  185 IVPRDVKPRNYR-G-----GKLVDFSSS  206 (207)
T ss_pred             eeeccCcccccc-C-----CEEEecccC
Confidence            999999999985 2     579999975

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.00  E-value=3.7e-05  Score=79.83  Aligned_cols=130  Identities=25%  Similarity=0.301  Sum_probs=92.2

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCc--------------------------hhHHHHHHHHHHhcCC--CCc
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS--------------------------KHYVSNELRMLERFGG--KNF  258 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~--------------------------~~~~~~Ei~iL~~L~h--~n~  258 (728)
                      ..|..|.-+.||+|.. .++..||+|+++....                          ..+..+|+.-|.++..  -+ 
T Consensus        54 g~istGKEA~Vy~a~~-~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVr-  131 (268)
T COG1718          54 GCISTGKEANVYLAET-GDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVR-  131 (268)
T ss_pred             eeecCCcceEEEeecc-CCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-
Confidence            3677888889999987 4689999998763210                          1124567777777653  33 


Q ss_pred             eEEecceEEeCCeeEEEEeccCCCC-hHHHhhc--CChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCce
Q 004835          259 IIKYEGCFKCGDSDCFVLEHVKHDR-PEVLKKE--IDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVKG  334 (728)
Q Consensus       259 Ivkl~~~~~~~~~~~LV~E~~~~~~-l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~~  334 (728)
                      +++.+.+..    -.|||||++... ..-.++.  +...++..+..++++.+.-|-. .++||+||..=|||+.  ++.+
T Consensus       132 vP~Pi~~~~----nVLvMEfIg~~g~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~--~~~p  205 (268)
T COG1718         132 VPEPIAFRN----NVLVMEFIGDDGLPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH--DGEP  205 (268)
T ss_pred             CCCceeecC----CeEEEEeccCCCCCCCCcccCCcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE--CCeE
Confidence            455555443    479999998752 2112222  2333677888889998888777 8999999999999998  4568


Q ss_pred             EEEeeecccc
Q 004835          335 YLIDFNLAMV  344 (728)
Q Consensus       335 kL~DFGlA~~  344 (728)
                      .|+|||-|..
T Consensus       206 ~iID~~QaV~  215 (268)
T COG1718         206 YIIDVSQAVT  215 (268)
T ss_pred             EEEECccccc
Confidence            9999998864

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.85  E-value=6.4e-05  Score=86.53  Aligned_cols=134  Identities=25%  Similarity=0.256  Sum_probs=85.2

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCc----------------------------h--------h------HHH
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----------------------------K--------H------YVS  244 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----------------------------~--------~------~~~  244 (728)
                      +.|+.++-|.||+|+.. +|+.||||+.+.+-.                            .        +      .+.
T Consensus       131 ~PiAsASIaQVH~A~L~-sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~  209 (517)
T COG0661         131 EPIASASIAQVHRAVLK-SGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYR  209 (517)
T ss_pred             CchhhhhHhhheeEEec-CCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHH
Confidence            47899999999999996 599999998763210                            0        0      123


Q ss_pred             HHHHHHHhc----CCCCceEEecceEEeCCeeEEEEeccCCCChHHHh--h--cCChHHHHHHHHHHHHH-HHHHHhCCc
Q 004835          245 NELRMLERF----GGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLK--K--EIDLSQLQWYGYCLFRA-LASLHKQGI  315 (728)
Q Consensus       245 ~Ei~iL~~L----~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~--~--~l~~~~~~~i~~QIl~a-L~yLHs~gI  315 (728)
                      +|..-+.++    .+...+.-..-+.+-.....|+|||+.|-.+..+.  +  .++.   +.++..++.+ +..+=..|+
T Consensus       210 ~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~---k~ia~~~~~~f~~q~~~dgf  286 (517)
T COG0661         210 REAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDR---KELAELLVRAFLRQLLRDGF  286 (517)
T ss_pred             HHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCH---HHHHHHHHHHHHHHHHhcCc
Confidence            444444433    22222322222233346678999999996655442  1  2442   2333333332 333445899


Q ss_pred             EeccCCCCceEeecCCCceEEEeeeccccc
Q 004835          316 VHRDVKPGNFLFSCKAVKGYLIDFNLAMVG  345 (728)
Q Consensus       316 IHRDIKPeNILld~~~~~~kL~DFGlA~~~  345 (728)
                      +|.|..|.||+++ .++++.+.|||+....
T Consensus       287 fHaDpHpGNi~v~-~~g~i~~lDfGi~g~l  315 (517)
T COG0661         287 FHADPHPGNILVR-SDGRIVLLDFGIVGRL  315 (517)
T ss_pred             cccCCCccceEEe-cCCcEEEEcCcceecC
Confidence            9999999999999 5577889999998754

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.84  E-value=8.1e-05  Score=77.01  Aligned_cols=73  Identities=22%  Similarity=0.240  Sum_probs=47.0

Q ss_pred             EEecccCce-EEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCC-C-ceEEecceEEeC---CeeEEEEeccC
Q 004835          207 EEEGSGGYG-TVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGK-N-FIIKYEGCFKCG---DSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG-~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~-n-~Ivkl~~~~~~~---~~~~LV~E~~~  280 (728)
                      +.|+.|+.. .||+.     +..+++|+.........+.+|..++..+... . -+..+++.....   ...|+||++++
T Consensus         3 ~~~~~gG~~n~vy~~-----~~~~VlR~~~~~~~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~~~~l~~~i~   77 (235)
T cd05155           3 EPVDSGGTDNATFRL-----GDDMSVRLPSAAGYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWSVYRWLE   77 (235)
T ss_pred             eeccCCCcccceEEc-----CCceEEEcCCccchHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCcceEEEEeec
Confidence            457767666 58876     2357889876654556788999999887642 1 144444433222   24589999998


Q ss_pred             CCCh
Q 004835          281 HDRP  284 (728)
Q Consensus       281 ~~~l  284 (728)
                      |..+
T Consensus        78 G~~l   81 (235)
T cd05155          78 GETA   81 (235)
T ss_pred             CCCC
Confidence            8554

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PLN02876 acyl-CoA dehydrogenase

Probab=97.81  E-value=0.0002  Score=87.56  Aligned_cols=78  Identities=15%  Similarity=0.211  Sum_probs=55.4

Q ss_pred             EEEecccCceEEEEEEEcCCC--eEEEEEeccCcC---chhHHHHHHHHHHhcC-CCCc-eEEecceEEeC---CeeEEE
Q 004835          206 EEEEGSGGYGTVYRARRKNDG--TVVAIKCPHANA---SKHYVSNELRMLERFG-GKNF-IIKYEGCFKCG---DSDCFV  275 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g--~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~-h~n~-Ivkl~~~~~~~---~~~~LV  275 (728)
                      ++.|+.|.++.+|+......+  ..+++|+.....   ....+.+|+.+++.+. |.+. +++++.++.+.   +..|+|
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flV  122 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYI  122 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEE
Confidence            567899999999998875332  467888764322   3356889999999996 4441 46666666543   467999


Q ss_pred             EeccCCCC
Q 004835          276 LEHVKHDR  283 (728)
Q Consensus       276 ~E~~~~~~  283 (728)
                      |||++|..
T Consensus       123 ME~v~G~~  130 (822)
T PLN02876        123 MEYLEGRI  130 (822)
T ss_pred             EEecCCcc
Confidence            99998853

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=97.79  E-value=6.4e-06  Score=94.12  Aligned_cols=134  Identities=16%  Similarity=0.109  Sum_probs=95.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      ...|...+.+++|+++.+++.+...+...+ .+.+...   ....-++++|.+++|||-.+..++.+..+.+.+++++++
T Consensus       241 ~kws~~fh~fvK~altknpKkRptaeklL~-h~fvs~~---l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~  316 (829)
T KOG0576|consen  241 TKWSEFFHNFVKGALTKNPKKRPTAEKLLQ-HPFVSQT---LSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRIC  316 (829)
T ss_pred             ccchHHHHHHHHHHhcCCCccCCChhhhee-ceeeccc---hhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhh
Confidence            345666677899999999999886554444 6665444   223458899999999997777788888888999999999


Q ss_pred             CCC--ChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          280 KHD--RPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       280 ~~~--~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      .++  ......   -.+..-+...+.+.-+++|++||+---+|||    ||+.. . ...+..||+...
T Consensus       317 s~~rs~~~~~~~se~~~~~~~~~~~~r~et~~l~~l~~~~~~~~d----~~l~s-~-~~~~~~~~~v~~  379 (829)
T KOG0576|consen  317 STGRSSALEMTVSEIALEQYQFAYPLRKETRPLAELHSSYKVHRD----NILGS-E-EEVKLLDFAVPP  379 (829)
T ss_pred             cCCccccccCChhhHhhhhhhhhhhhhhhcccccccccccccCcc----ccccc-c-cccccccccCCc
Confidence            877  211111   1134445555666777899999998889999    88876 3 346677777654

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=97.57  E-value=0.00078  Score=69.28  Aligned_cols=75  Identities=12%  Similarity=0.126  Sum_probs=50.9

Q ss_pred             EEEecccCceEEEEEEEcC-CCeEEEEEeccCcCch-hHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCC
Q 004835          206 EEEEGSGGYGTVYRARRKN-DGTVVAIKCPHANASK-HYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~-~g~~VAIK~i~~~~~~-~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~  283 (728)
                      ++.|..|-...+|++.... .+..|++|+....... -...+|+.++..+......+++++.+.    -.+||||++|..
T Consensus         3 i~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~~~~d~~~E~~~~~~l~~~gl~P~v~~~~~----~~~l~e~i~G~~   78 (235)
T cd05157           3 FKRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTELIIDRERELRIHKLLSKHGLAPKLYATFQ----NGLIYEFIPGRT   78 (235)
T ss_pred             EEEcCCcccceEEEEEcCCCCCCeEEEEEccCCccceecHHHHHHHHHHHHhCCCCCeEEEEeC----CcEEEEeeCCCc
Confidence            4577888888999997643 3578999987543211 223478989998876555666655443    248999998854


Q ss_pred             h
Q 004835          284 P  284 (728)
Q Consensus       284 l  284 (728)
                      +
T Consensus        79 l   79 (235)
T cd05157          79 L   79 (235)
T ss_pred             C
Confidence            3

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.56  E-value=0.00055  Score=78.86  Aligned_cols=134  Identities=25%  Similarity=0.266  Sum_probs=84.4

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCc---------------------------------hhH------HHHHH
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---------------------------------KHY------VSNEL  247 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---------------------------------~~~------~~~Ei  247 (728)
                      +.||.-+.|.||+|+.+. |+.||||+-+..-.                                 .+.      |.+|.
T Consensus       167 ~piaaASlaQVhrA~L~~-G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA  245 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKN-GEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEA  245 (538)
T ss_pred             chhhhcchhheEEEEecC-CCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHH
Confidence            478999999999999974 99999998653210                                 011      22333


Q ss_pred             HH----HHhcCCCC-----ceEEecceEEeCCeeEEEEeccCCCCh---HHHhh-cCChHHHHHHHHHHHHHHHHHHhCC
Q 004835          248 RM----LERFGGKN-----FIIKYEGCFKCGDSDCFVLEHVKHDRP---EVLKK-EIDLSQLQWYGYCLFRALASLHKQG  314 (728)
Q Consensus       248 ~i----L~~L~h~n-----~Ivkl~~~~~~~~~~~LV~E~~~~~~l---~~l~~-~l~~~~~~~i~~QIl~aL~yLHs~g  314 (728)
                      +-    .+.+.|-+     .|++++..+  .....|+|||++|..+   +.+.+ .++...+...+.+..  +.-|=..|
T Consensus       246 ~Nae~~~~~f~~~~~~~~V~VP~Vy~~~--st~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~--~~qIf~~G  321 (538)
T KOG1235|consen  246 KNAERFRENFKDFSLLTYVLVPKVYWDL--STKRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAY--LEQIFKTG  321 (538)
T ss_pred             HhHHHHHHHHHhcccccceeCCeehhhc--CcceEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHH--HHHHHhcC
Confidence            22    22233333     144444433  3467899999998644   33433 355554333333221  12233468


Q ss_pred             cEeccCCCCceEeec---CCCceEEEeeeccccc
Q 004835          315 IVHRDVKPGNFLFSC---KAVKGYLIDFNLAMVG  345 (728)
Q Consensus       315 IIHRDIKPeNILld~---~~~~~kL~DFGlA~~~  345 (728)
                      ++|+|=.|.||++..   .+..+.+.|||+....
T Consensus       322 ffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~i  355 (538)
T KOG1235|consen  322 FFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVI  355 (538)
T ss_pred             CccCCCCCCcEEEecCCCCCccEEEEcccccccc
Confidence            999999999999983   3677899999998754

>PRK10593 hypothetical protein; Provisional

Probab=97.54  E-value=0.00084  Score=72.38  Aligned_cols=77  Identities=12%  Similarity=0.085  Sum_probs=55.8

Q ss_pred             EEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCC--ceEEecceEEe---CCeeEEEEecc
Q 004835          205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKN--FIIKYEGCFKC---GDSDCFVLEHV  279 (728)
Q Consensus       205 i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n--~Ivkl~~~~~~---~~~~~LV~E~~  279 (728)
                      -.+.||.|..+.||..... ++ .+.+|..+.......+.+|...|+.|....  .++++++++..   .+..+||||++
T Consensus        18 ~~~~i~~G~~~~vy~~~~~-~~-~~~~k~~~~~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVmE~i   95 (297)
T PRK10593         18 RVECISEQPYAALWALYDS-QG-NPMPLMARSFSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLLERL   95 (297)
T ss_pred             eeeecCCccceeEEEEEcC-CC-CEEEEEecccccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEEecc
Confidence            3557999999999998763 23 577787443234567889999999886431  27788876653   36689999999


Q ss_pred             CCCC
Q 004835          280 KHDR  283 (728)
Q Consensus       280 ~~~~  283 (728)
                      ++..
T Consensus        96 ~G~~   99 (297)
T PRK10593         96 RGVS   99 (297)
T ss_pred             CCEe
Confidence            9754

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=97.52  E-value=0.00056  Score=73.74  Aligned_cols=139  Identities=17%  Similarity=0.167  Sum_probs=83.1

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCc-eEEecceE------EeCCeeEEE
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNF-IIKYEGCF------KCGDSDCFV  275 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~-Ivkl~~~~------~~~~~~~LV  275 (728)
                      ...+..++.|....+|++..  ++..+++|+.+.......+..|+.++..|....+ +++++...      ...+..++|
T Consensus        24 ~~~i~~~~~G~~n~~y~v~t--~~~~~vLK~~~~~~~~~~i~~e~~~l~~L~~~g~pvp~~i~t~~g~~~~~~~g~~~~l  101 (307)
T TIGR00938        24 LLSLKGIAEGVENSNYLLTT--DVGRYILTLYEKRVKAEELPFFLALTTHLAARGLPVPKPVKSRDGRQLSTLAGKPACL  101 (307)
T ss_pred             ceeccccCCccccceEEEEe--CCCcEEEEEecCCCCHHHHHHHHHHHHHHHHCCCCCCccccCCCCCeehhcCCeEEEE
Confidence            34456778888889999875  3446888987654445566678888877753321 33333321      124567899


Q ss_pred             EeccCCCChH-----HHh-------------hcCCh--------H---HH--H----------HHHHHHHHHHHHHHh--
Q 004835          276 LEHVKHDRPE-----VLK-------------KEIDL--------S---QL--Q----------WYGYCLFRALASLHK--  312 (728)
Q Consensus       276 ~E~~~~~~l~-----~l~-------------~~l~~--------~---~~--~----------~i~~QIl~aL~yLHs--  312 (728)
                      ++|++|....     ...             ..++.        .   ..  .          .....+...+.++..  
T Consensus       102 ~e~i~G~~~~~~~~~~~~~~G~~LA~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~~  181 (307)
T TIGR00938       102 VEFLQGLSVGRPTAMHCRPVGEVLAWMHLAGAHFPENRKNSLRLEAWHILAEKCFEAAPQLEAHMGAELDKELDYLDKFW  181 (307)
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCCCChHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHHhhh
Confidence            9999884321     110             00100        0   00  0          001112334555542  


Q ss_pred             -----CCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          313 -----QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       313 -----~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                           .+++|+|+.+.||+++ ++....|+||+.+..
T Consensus       182 ~~~~~~~l~HgD~~~~Nvl~~-~~~~~~vIDfd~~~~  217 (307)
T TIGR00938       182 PRDLPRGVIHADLFPDNVLFD-GDSVKGVIDFYFACT  217 (307)
T ss_pred             hhcCCCccCCCCCCcCcEEEE-CCceEEEeecccccC
Confidence                 5899999999999998 444567999999864

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=97.44  E-value=0.00064  Score=72.53  Aligned_cols=135  Identities=16%  Similarity=0.126  Sum_probs=83.2

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCc-eEEecce------EEeCCeeEEEEec
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNF-IIKYEGC------FKCGDSDCFVLEH  278 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~-Ivkl~~~------~~~~~~~~LV~E~  278 (728)
                      ++.|..|....+|+...  ++..+++|+... .....+..|+.++..+.+..+ +++++..      ...++..++|++|
T Consensus        19 i~~i~~G~~n~~y~v~~--~~~~~vLr~~~~-~~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~~~~~~l~~~   95 (296)
T cd05153          19 FEGISAGIENTNYFVTT--DSGRYVLTLFEK-VSAEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELAGKPAALVEF   95 (296)
T ss_pred             eecccCccccceEEEEe--CCCcEEEEEcCC-CChHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeCCceEEEEEe
Confidence            45677888889999875  345789998765 445567778888888754331 3333331      1234567899999


Q ss_pred             cCCCChHH-----H---h------h----cCC----------hHHH--H--------HHHHHHHHHHHHHHh-------C
Q 004835          279 VKHDRPEV-----L---K------K----EID----------LSQL--Q--------WYGYCLFRALASLHK-------Q  313 (728)
Q Consensus       279 ~~~~~l~~-----l---~------~----~l~----------~~~~--~--------~i~~QIl~aL~yLHs-------~  313 (728)
                      ++|..+..     +   .      +    .+.          +...  .        .....+..++.++..       .
T Consensus        96 i~G~~~~~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~  175 (296)
T cd05153          96 LAGEHLTRPTAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAEDRALLADELARQDAFDPSDLPR  175 (296)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHhccccCHHHHHHHHHHHHHHHhhhhhcCCC
Confidence            99865321     1   0      0    010          0000  0        011112334445443       4


Q ss_pred             CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          314 GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       314 gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +++|+|+.|.|||++ ++....|+||+.+..
T Consensus       176 ~l~HgD~~~~Nil~~-~~~~~~iIDfe~a~~  205 (296)
T cd05153         176 GVIHADLFRDNVLFD-GDELSGVIDFYFACT  205 (296)
T ss_pred             cCCccCcCcccEEEe-CCceEEEeehhhhcC
Confidence            799999999999998 555467999999865

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>TIGR02721 ycfN_thiK thiamine kinase

Probab=97.34  E-value=0.00082  Score=70.39  Aligned_cols=129  Identities=15%  Similarity=0.152  Sum_probs=77.3

Q ss_pred             EecccCceEEEEEEEcCCCeEEEEEeccCcCch--hHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCChH
Q 004835          208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASK--HYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPE  285 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~--~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l~  285 (728)
                      .+..|-.+.+|+...  ++..+++|........  -...+|..+++.+......++++....    -++||||++|..+.
T Consensus         3 ~~~~G~tn~~y~~~~--~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~i~~~~----~~~v~e~i~G~~~~   76 (256)
T TIGR02721         3 TLSGGLTNRSWRIEH--PGISFVWRPQSPVCKALGVDRQREYQILQALSALGLAPKPILVNE----HWLLVEWLEGEVIT   76 (256)
T ss_pred             cCCCcCcCCeEEEEe--CCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCCCCceEEEeC----CEEEEEeccCcccc
Confidence            345677888998874  5778999986543221  134689999998876543445544432    37899999985432


Q ss_pred             H-----------Hh------hcC-------Ch-HHHHHHHHHH---------HHHHHHHHh--------CCcEeccCCCC
Q 004835          286 V-----------LK------KEI-------DL-SQLQWYGYCL---------FRALASLHK--------QGIVHRDVKPG  323 (728)
Q Consensus       286 ~-----------l~------~~l-------~~-~~~~~i~~QI---------l~aL~yLHs--------~gIIHRDIKPe  323 (728)
                      .           +.      +.+       +. ..+..+..++         ...+..+-.        ..++|+|+.|.
T Consensus        77 ~~~~~~~~~~~~la~~l~~lH~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~H~Dl~~~  156 (256)
T TIGR02721        77 LDQFVALDLLLELAALLHQLHSQPRFGYPLSLKARIAHYWLQIDPARRTPEWLRLYKQFRSAPEPAPLPLAPLHMDVHAY  156 (256)
T ss_pred             cccccCchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHhcccccCChHHHHHHHHHHhccCCCCCCCeeecCCCCcC
Confidence            1           10      111       11 1111221111         111222211        25899999999


Q ss_pred             ceEeecCCCceEEEeeecccc
Q 004835          324 NFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       324 NILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+++ +++ +.|+||..|..
T Consensus       157 Nil~~-~~~-~~lIDwE~a~~  175 (256)
T TIGR02721       157 NLVVT-PQG-LKLIDWEYASD  175 (256)
T ss_pred             cEEEe-CCC-CEEEeccccCc
Confidence            99998 443 78999999875

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.30  E-value=0.0025  Score=64.81  Aligned_cols=124  Identities=22%  Similarity=0.231  Sum_probs=86.4

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcC------------------chhHHHHHHHHHHhcC------CCCceEEe
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANA------------------SKHYVSNELRMLERFG------GKNFIIKY  262 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~------------------~~~~~~~Ei~iL~~L~------h~n~Ivkl  262 (728)
                      ..||.|+.-.||.--   .+....||+.....                  ...+..+|+.....+.      +.+ |.++
T Consensus         7 ~~i~~G~~R~cy~HP---~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~-i~r~   82 (199)
T PF10707_consen    7 DLIAQGGERDCYQHP---DDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSH-IPRF   82 (199)
T ss_pred             cccccCCCceEEECC---CCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccc-cccE
Confidence            478999999998643   35567888876544                  2344667777766665      444 9999


Q ss_pred             cceEEeCCeeEEEEeccCCC------ChHHHhhc--CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC--C
Q 004835          263 EGCFKCGDSDCFVLEHVKHD------RPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA--V  332 (728)
Q Consensus       263 ~~~~~~~~~~~LV~E~~~~~------~l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~--~  332 (728)
                      +|..+++.-.-+|+|.+...      ++..+.+.  ++.    .+...+-+-..||-..+|+.+||+|.||++...+  .
T Consensus        83 ~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~~~~----~~~~~L~~f~~~l~~~~Iv~~dl~~~NIv~~~~~~~~  158 (199)
T PF10707_consen   83 YGFVETNLGLGLVVELIRDADGNISPTLEDYLKEGGLTE----ELRQALDEFKRYLLDHHIVIRDLNPHNIVVQRRDSGE  158 (199)
T ss_pred             eEEEecCCceEEEEEEEECCCCCcCccHHHHHHcCCccH----HHHHHHHHHHHHHHHcCCeecCCCcccEEEEecCCCc
Confidence            99999999999999987542      24444432  333    2333344456788899999999999999997332  2


Q ss_pred             -ceEEEe
Q 004835          333 -KGYLID  338 (728)
Q Consensus       333 -~~kL~D  338 (728)
                       .+.|+|
T Consensus       159 ~~lvlID  165 (199)
T PF10707_consen  159 FRLVLID  165 (199)
T ss_pred             eEEEEEe
Confidence             567777

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PRK05231 homoserine kinase; Provisional

Probab=97.24  E-value=0.0021  Score=69.39  Aligned_cols=134  Identities=13%  Similarity=0.130  Sum_probs=76.0

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCc-eEEecce------EEeCCeeEEEEecc
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNF-IIKYEGC------FKCGDSDCFVLEHV  279 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~-Ivkl~~~------~~~~~~~~LV~E~~  279 (728)
                      +.|+.|....+|+....  +..+++|+.. ......+..|+.++..|....+ +++.+..      ....+..+++++|+
T Consensus        28 ~~l~~G~~n~~y~v~t~--~g~~vLK~~~-~~~~~~l~~~~~~l~~L~~~glpvP~~i~~~~G~~~~~~~g~~~~l~~~l  104 (319)
T PRK05231         28 KGIAEGIENSNFFLTTT--QGEYVLTLFE-RLTAEDLPFFLGLMQHLAARGVPVPAPVARRDGAALGELAGKPAAIVTFL  104 (319)
T ss_pred             chhccccccceEEEEeC--CCcEEEEEec-cCChHHhHHHHHHHHHHHHCCCCCCcceeCCCCCEeeeeCCEEEEEEEec
Confidence            45677887899998763  3468999876 3334455566666666542221 2232221      12355679999999


Q ss_pred             CCCChH-----HHh-------------hcCC----------h-HHH-HH-----------HHHH-HHHHHHHHH------
Q 004835          280 KHDRPE-----VLK-------------KEID----------L-SQL-QW-----------YGYC-LFRALASLH------  311 (728)
Q Consensus       280 ~~~~l~-----~l~-------------~~l~----------~-~~~-~~-----------i~~Q-Il~aL~yLH------  311 (728)
                      +|....     ...             ..++          + ... ..           .+.+ +...+..+-      
T Consensus       105 ~G~~~~~~~~~~~~~~G~~LA~lH~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  184 (319)
T PRK05231        105 EGKWPRAPTAAHCAEVGEMLARMHLAGRDFPLERPNLRGLAWWRELAPRLLPFLADEQAALLEAELAAQLAFLASAAWPA  184 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHhhhhcCCccCCCCCChHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhhhcccccc
Confidence            986321     110             0010          1 010 00           1111 111222332      


Q ss_pred             -hCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          312 -KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       312 -s~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                       ..++||+|+.|.|||++ ++...-|+||+.+..
T Consensus       185 lp~~liHgD~~~~Nil~~-~~~~~~iIDf~~~~~  217 (319)
T PRK05231        185 LPRGVIHADLFRDNVLFE-GDRLSGFIDFYFACN  217 (319)
T ss_pred             CCcccCCCCCCCCcEEEE-CCceEEEEecccccC
Confidence             23899999999999998 544457999999875

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=97.17  E-value=0.0026  Score=68.20  Aligned_cols=75  Identities=16%  Similarity=0.136  Sum_probs=50.3

Q ss_pred             EEEecccCceEEEEEEEcC------CCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          206 EEEEGSGGYGTVYRARRKN------DGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~------~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ++.|..|-...||++....      .++.|++|+..... ......+|..++..+.......++++++..    .+|+||
T Consensus         3 i~~l~gGltN~~y~v~~~~~~~~~~~~~~~vlRi~~~~~~~~~~r~~E~~~~~~l~~~g~~P~~~~~~~~----~~v~e~   78 (302)
T cd05156           3 VSKISGGLTNAVYKVSLPDEDALSDEPRKVLLRVYGQSVELLIDRERELVVFARLSERNLGPKLYGIFPN----GRIEEF   78 (302)
T ss_pred             EEEecCcccceeEEEEcCCcccccCCCCeEEEEEecCCCcceechHHHHHHHHHHHhCCCCCceEEEeCC----Cchhhe
Confidence            3456677777899987643      25789999976542 223456888888888765545566666542    358999


Q ss_pred             cCCCCh
Q 004835          279 VKHDRP  284 (728)
Q Consensus       279 ~~~~~l  284 (728)
                      ++|..+
T Consensus        79 i~G~~l   84 (302)
T cd05156          79 IPSRTL   84 (302)
T ss_pred             eCCCcC
Confidence            887543

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.12  E-value=0.0014  Score=66.01  Aligned_cols=96  Identities=24%  Similarity=0.195  Sum_probs=78.0

Q ss_pred             HHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCChHH----Hh--hcCChHHHHHHHHHHHHHHHHHHh---CC
Q 004835          244 SNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEV----LK--KEIDLSQLQWYGYCLFRALASLHK---QG  314 (728)
Q Consensus       244 ~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~----l~--~~l~~~~~~~i~~QIl~aL~yLHs---~g  314 (728)
                      ..|.-+++.+.+..++++++|++-    .++|.||.+.+.+..    +.  -..+|..+..|+.++++.+.+|+.   ..
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~CG----~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~   82 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSCG----RFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGF   82 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeECC----CEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            368889999998767999999984    367999999764421    11  236899999999999999999997   35


Q ss_pred             cEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          315 IVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       315 IIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.-.|++|+|+-++ +++++|++|...+..
T Consensus        83 ~~lcDv~~~nfgv~-~~~~lk~iDld~v~~  111 (188)
T PF12260_consen   83 FYLCDVSPDNFGVN-DDGRLKLIDLDDVFV  111 (188)
T ss_pred             EEEeecchHHeEEe-CCCcEEEEechhcch
Confidence            77799999999999 777899999988764

Proteins in this uncharacterised family are described as transmembrane proteins.

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=96.95  E-value=0.0096  Score=66.82  Aligned_cols=74  Identities=18%  Similarity=0.192  Sum_probs=52.2

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccC---------cCchhHHHHHHHHHHhcCC--CCceEEecceEEeCCeeEE
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHA---------NASKHYVSNELRMLERFGG--KNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~---------~~~~~~~~~Ei~iL~~L~h--~n~Ivkl~~~~~~~~~~~L  274 (728)
                      .+.||.|.+..||++.....++.|+||.-..         ....++...|.+.|..+..  +.++++++.+  +.+..++
T Consensus        31 ~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~--D~~~~~l  108 (401)
T PRK09550         31 AREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHY--DEELAVT  108 (401)
T ss_pred             eeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEE--CCCCCEE
Confidence            3578999999999999864336899997431         1134566778888887642  2336667655  3466789


Q ss_pred             EEeccCC
Q 004835          275 VLEHVKH  281 (728)
Q Consensus       275 V~E~~~~  281 (728)
                      ||||+++
T Consensus       109 VME~L~~  115 (401)
T PRK09550        109 VMEDLSD  115 (401)
T ss_pred             EEecCCC
Confidence            9999876

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=96.82  E-value=0.0079  Score=64.24  Aligned_cols=45  Identities=22%  Similarity=0.180  Sum_probs=31.6

Q ss_pred             cccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCC
Q 004835          210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGG  255 (728)
Q Consensus       210 G~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h  255 (728)
                      +.|-...||.... .+|..+++|..+.......+.+|..+|..+..
T Consensus        20 ~~g~~~~v~~i~~-~~g~~~VlR~p~~~~~~~~l~rE~~vL~~L~~   64 (276)
T cd05152          20 ESGLDFQVVFAKD-TDGVPWVLRIPRRPDVSERAAAEKRVLALVRK   64 (276)
T ss_pred             CCcceeEEEEEEc-CCCCeEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence            4555556666533 35789999987654455668899999998864

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=96.69  E-value=0.0088  Score=73.33  Aligned_cols=71  Identities=21%  Similarity=0.083  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhcCCCCceEEecceEEeCCee----EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCC
Q 004835          243 VSNELRMLERFGGKNFIIKYEGCFKCGDSD----CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQG  314 (728)
Q Consensus       243 ~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~----~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~g  314 (728)
                      ..-|+..+.++.|+| +..++.+.......    .+..+++....+.....   .++....+.+..++++||.|+|+..
T Consensus       229 ~E~e~~~l~k~~~~n-~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v~~i~~~~~r~~~~~~~~GL~~~h~~~  306 (1351)
T KOG1035|consen  229 TEIELESLSKIAHDN-LGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSVGSIPLETLRILHQKLLEGLAYLHSLS  306 (1351)
T ss_pred             HHHHHHHHHhhcccc-ccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhccccCHHHHHHHHHHHhhhHHHHHHhc
Confidence            345677788899999 66666554433222    22335555544444333   3778889999999999999999983

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=96.65  E-value=0.0088  Score=65.55  Aligned_cols=134  Identities=25%  Similarity=0.300  Sum_probs=92.7

Q ss_pred             eEEEEecccCceEEEEEEEcCCCeEEEEEeccCc------C------------------c----hhHHHHHHHHHHhcCC
Q 004835          204 IVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN------A------------------S----KHYVSNELRMLERFGG  255 (728)
Q Consensus       204 ~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~------~------------------~----~~~~~~Ei~iL~~L~h  255 (728)
                      .|...|..|.-+.||.|... +|..+|||+++..      .                  .    .-+...|++-|.+|+.
T Consensus       147 ~inGCiSTGKEANVYHat~~-dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~  225 (520)
T KOG2270|consen  147 EINGCISTGKEANVYHATEE-DGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNN  225 (520)
T ss_pred             ecccccccCccceeEeeecC-CCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHh
Confidence            44557889999999999874 7888999987531      0                  0    1235678888888865


Q ss_pred             CCceEEecceEEeCCeeEEEEeccCCCChHH-Hhh--cCChHHHHHHHHHHHHHHHHH-HhCCcEeccCCCCceEeecCC
Q 004835          256 KNFIIKYEGCFKCGDSDCFVLEHVKHDRPEV-LKK--EIDLSQLQWYGYCLFRALASL-HKQGIVHRDVKPGNFLFSCKA  331 (728)
Q Consensus       256 ~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~-l~~--~l~~~~~~~i~~QIl~aL~yL-Hs~gIIHRDIKPeNILld~~~  331 (728)
                      .. |+...-...  ..-.|||+|++...... .++  .++...+..+-.|++.-+.-| |..++||.||.-=|+|+.  +
T Consensus       226 aG-IP~PePIlL--k~hVLVM~FlGrdgw~aPkLKd~~ls~~ka~~~Y~~~v~~MR~lY~~c~LVHADLSEfN~Lyh--d  300 (520)
T KOG2270|consen  226 AG-IPCPEPILL--KNHVLVMEFLGRDGWAAPKLKDASLSTSKARELYQQCVRIMRRLYQKCRLVHADLSEFNLLYH--D  300 (520)
T ss_pred             cC-CCCCCceee--ecceEeeeeccCCCCcCcccccccCChHHHHHHHHHHHHHHHHHHHHhceeccchhhhhheEE--C
Confidence            44 433222222  23479999998654322 222  366667777777777766665 456999999999999995  4


Q ss_pred             CceEEEeeeccc
Q 004835          332 VKGYLIDFNLAM  343 (728)
Q Consensus       332 ~~~kL~DFGlA~  343 (728)
                      +.++|+|.+-+.
T Consensus       301 G~lyiIDVSQSV  312 (520)
T KOG2270|consen  301 GKLYIIDVSQSV  312 (520)
T ss_pred             CEEEEEEccccc
Confidence            569999988764

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=96.55  E-value=0.0026  Score=68.56  Aligned_cols=132  Identities=19%  Similarity=0.253  Sum_probs=93.4

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC----------cC-------c-------hhHHHHHHHHHHhcCCCC
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA----------NA-------S-------KHYVSNELRMLERFGGKN  257 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~----------~~-------~-------~~~~~~Ei~iL~~L~h~n  257 (728)
                      -+.++..||-|.-+-||.+-+. .|+..++|.-+.          ..       .       +-...+|+..|+.|..+.
T Consensus        93 v~svGnqIGVGKESDIY~v~d~-~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~g  171 (465)
T KOG2268|consen   93 VESVGNQIGVGKESDIYVVADE-EGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERG  171 (465)
T ss_pred             hhhhccccccccccceEEEecC-CCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            4678889999999999999984 689999996331          00       0       112457888888886532


Q ss_pred             c-eEEecceEEeCCeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEE
Q 004835          258 F-IIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYL  336 (728)
Q Consensus       258 ~-Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL  336 (728)
                      + +++.+++    +..|+|||++.+-.+....+-.+...   +...++.-+.-|..+|+||+|..-=||+++ ++..+++
T Consensus       172 fpVPkpiD~----~RH~Vvmelv~g~Pl~~v~~v~d~~~---ly~~lm~~Iv~la~~GlIHgDFNEFNimv~-dd~~i~v  243 (465)
T KOG2268|consen  172 FPVPKPIDH----NRHCVVMELVDGYPLRQVRHVEDPPT---LYDDLMGLIVRLANHGLIHGDFNEFNIMVK-DDDKIVV  243 (465)
T ss_pred             CCCCCcccc----cceeeHHHhhcccceeeeeecCChHH---HHHHHHHHHHHHHHcCceecccchheeEEe-cCCCEEE
Confidence            1 5555554    45689999998876655443333333   333344445667889999999999999999 6777999


Q ss_pred             Eeeecc
Q 004835          337 IDFNLA  342 (728)
Q Consensus       337 ~DFGlA  342 (728)
                      +||--.
T Consensus       244 IDFPQm  249 (465)
T KOG2268|consen  244 IDFPQM  249 (465)
T ss_pred             eechHh
Confidence            999654

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=96.30  E-value=0.029  Score=61.40  Aligned_cols=134  Identities=16%  Similarity=0.221  Sum_probs=79.2

Q ss_pred             EEecccCceEEEEEEEcCC---CeEEEEEeccCcCc-hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCC
Q 004835          207 EEEGSGGYGTVYRARRKND---GTVVAIKCPHANAS-KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHD  282 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~---g~~VAIK~i~~~~~-~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~  282 (728)
                      +.|..|-...+|++.....   +..|++|+...... .-.-.+|..+++.+....+-+++++++..+    +|.+|+.+.
T Consensus        20 ~~l~gGlTN~~~~v~~~~~~~~~~~~v~Ri~g~~t~~~IdR~~E~~il~~l~~~gl~P~~l~~~~~G----~i~~fi~g~   95 (330)
T PLN02421         20 ERISGGITNLLLKVSVKEENGNEVSVTVRLFGPNTDYVIDRERELQAIKYLSAAGFGAKLLGVFGNG----MIQSFINAR   95 (330)
T ss_pred             EEeCCcccceEEEEEecCCCCCCceEEEEEecCCcCeEechHHHHHHHHHHHhcCCCCceeEEeCCc----EeehhhcCC
Confidence            3444577778998875432   34899998764322 111247888988887766556677666432    588998765


Q ss_pred             ChHH--------H---h------hcCC---------hHHHHHHHHHH----------------------HHHHHHH---H
Q 004835          283 RPEV--------L---K------KEID---------LSQLQWYGYCL----------------------FRALASL---H  311 (728)
Q Consensus       283 ~l~~--------l---~------~~l~---------~~~~~~i~~QI----------------------l~aL~yL---H  311 (728)
                      .+..        +   .      +.++         +..+..+..++                      ..-+..+   .
T Consensus        96 ~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~  175 (330)
T PLN02421         96 TLTPSDMRKPKVAAEIAKELRRLHQVEIPGSKEPQLWNDIFKFYEKASTVKFEDPEKQKKYETISFEELRDEIVELKEIT  175 (330)
T ss_pred             CCChHHCCCHHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHhhhcccCcHHHhhhhcccCHHHHHHHHHHHHHHh
Confidence            4321        1   0      1110         12222222211                      1111111   1


Q ss_pred             -hC----CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          312 -KQ----GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       312 -s~----gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                       ..    -.+|.|+-+.|||++.+++.++++||..|..
T Consensus       176 ~~~~~~~v~CHnDl~~~NiL~~~~~~~l~lID~EYag~  213 (330)
T PLN02421        176 DSLKAPVVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSY  213 (330)
T ss_pred             ccCCCCeEEEECCCCcccEEEeCCCCcEEEEcccccCC
Confidence             11    2799999999999974556799999999875

>PLN02236 choline kinase

Probab=96.27  E-value=0.027  Score=62.06  Aligned_cols=135  Identities=16%  Similarity=0.157  Sum_probs=81.8

Q ss_pred             EEEecccCceEEEEEEEcC----CCeEEEEEeccCcCc-hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          206 EEEEGSGGYGTVYRARRKN----DGTVVAIKCPHANAS-KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~----~g~~VAIK~i~~~~~-~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      +..|-.|-...+|++....    .++.|++|+...... .-...+|+.++..+....+-.++++.+..+    .|.+|++
T Consensus        41 i~~l~gGlTN~~y~v~~~~~~~~~~~~~v~Ri~g~~t~~~idR~~E~~~~~~l~~~gl~P~~~~~~~~g----~v~efi~  116 (344)
T PLN02236         41 VIPLKGAMTNEVFQIKWPTKEGNLGRKVLVRIYGEGVELFFDRDDEIRTFECMSRHGQGPRLLGRFPNG----RVEEFIH  116 (344)
T ss_pred             EEEcCCcccceeEEEEeCCCCCCCCCeEEEEEccCCCCeeechHHHHHHHHHHHHcCCCCceEEEECCc----eEEEeeC
Confidence            3455558888999987532    247899998764321 111257889988887766556777776433    5789987


Q ss_pred             CCChHHH-----------h------hcCC---------hHHHHHHHHHH-----------------HHHHHHH----H--
Q 004835          281 HDRPEVL-----------K------KEID---------LSQLQWYGYCL-----------------FRALASL----H--  311 (728)
Q Consensus       281 ~~~l~~l-----------~------~~l~---------~~~~~~i~~QI-----------------l~aL~yL----H--  311 (728)
                      +..+...           .      +.++         +..+..++.++                 ...+..|    .  
T Consensus       117 g~~l~~~~l~~~~~~~~ia~~L~~lH~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~L~~~~~~~  196 (344)
T PLN02236        117 ARTLSAADLRDPEISALIAAKLREFHSLDMPGPKNVLLWDRLRNWLKEAKNLCSPEEAKEFRLDSLEDEINLLEKELSGD  196 (344)
T ss_pred             CCCCCHHHcCChHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhhcCcchhhhcCHHHHHHHHHHHHHHhccc
Confidence            6543211           0      0111         12222222111                 1111122    1  


Q ss_pred             --hCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          312 --KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       312 --s~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                        ...++|+|+++.|||++.++..+.|+||..|..
T Consensus       197 ~~~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~~  231 (344)
T PLN02236        197 DQEIGFCHNDLQYGNIMIDEETRAITIIDYEYASY  231 (344)
T ss_pred             CCCceEEeCCCCcCcEEEeCCCCcEEEEeehhccc
Confidence              225899999999999984456799999999875

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=95.91  E-value=0.06  Score=57.92  Aligned_cols=76  Identities=17%  Similarity=0.199  Sum_probs=50.9

Q ss_pred             eEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcC--CCCceEEecceEEeCCeeEEEEeccCC
Q 004835          204 IVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFG--GKNFIIKYEGCFKCGDSDCFVLEHVKH  281 (728)
Q Consensus       204 ~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~--h~n~Ivkl~~~~~~~~~~~LV~E~~~~  281 (728)
                      +-.+.++-|....+|+..  .+++.+.||+-. ......+..|..-|+.|.  .+-.+++.+++....+..||||||++.
T Consensus        20 ~~~~~v~GG~i~~a~~~~--~~~~~~FvK~~~-~~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLlle~l~~   96 (288)
T PF03881_consen   20 TSIEPVSGGDINEAYRLD--TDGGSYFVKVNS-ESGRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLLEFLEM   96 (288)
T ss_dssp             -EEEEE--SSSSEEEEEE--TTS-EEEEEEEE-GGGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEEE----
T ss_pred             eeeEecCCCChhheEEEE--CCCccEEEEecC-hhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEEEeecC
Confidence            345678889999999988  578899999866 444566888998888883  455588888888877788999999886


Q ss_pred             C
Q 004835          282 D  282 (728)
Q Consensus       282 ~  282 (728)
                      +
T Consensus        97 ~   97 (288)
T PF03881_consen   97 G   97 (288)
T ss_dssp             -
T ss_pred             C
Confidence            6

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=95.66  E-value=0.11  Score=56.71  Aligned_cols=142  Identities=21%  Similarity=0.271  Sum_probs=81.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC---cCchhHHHHHHHHHHhcCCCC-ceEEecceEEeCC--eeEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA---NASKHYVSNELRMLERFGGKN-FIIKYEGCFKCGD--SDCF  274 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~---~~~~~~~~~Ei~iL~~L~h~n-~Ivkl~~~~~~~~--~~~L  274 (728)
                      ....+++.+..|.--.+|....  +++.+++.....   ........+|+.++..+..-. -+...++++..+.  ..|.
T Consensus        25 ~~~~~v~~~~~G~sn~t~~~~~--~~~~~vlR~P~~~~~~~~~~~~~re~~~i~~l~~~~vP~p~~~~~~~~~~~g~pf~  102 (321)
T COG3173          25 AGLLIVEEISGGWSNDTFRLGD--TGQKYVLRKPPRGDPVESAHDEKREYRVIAALLDVDVPVPRAFGLCGEGYLGTPFY  102 (321)
T ss_pred             CCCceeeeccCCcccceEEEec--CCceEEEecCCccccchhhhHHHhHHHHHHHhcCCCCCCcccccccccCCCCCceE
Confidence            3455556664554445666655  378888883321   123345667888888875422 1445566665554  6799


Q ss_pred             EEeccCCCCh---------H-HH-h----------hcC--------------ChHHHHHHHHH--------------HHH
Q 004835          275 VLEHVKHDRP---------E-VL-K----------KEI--------------DLSQLQWYGYC--------------LFR  305 (728)
Q Consensus       275 V~E~~~~~~l---------~-~l-~----------~~l--------------~~~~~~~i~~Q--------------Il~  305 (728)
                      ||+|+.|...         . .+ .          +.+              ...++..+..+              ...
T Consensus       103 v~~~veGe~~~~~~~~~~~~~~~~~~~l~~~La~LH~ida~~~~~~g~~~~~~~rql~~~~~~~~~~~~~~~~~~p~~~~  182 (321)
T COG3173         103 VMEWVEGEVVWSALPPESLGRQFALDALADFLAELHSIDAAGLPDPGKPNAYRGRQLARWDDEYRRAKKELGGRIPLADR  182 (321)
T ss_pred             EEEEecceeccCcCCcccchHHHHHHHHHHHHHHHhCCCCcCCCCCCccCccccchhhHHHHHHHHHHHhccCCCchHHH
Confidence            9999987311         1 00 0          000              00111111111              122


Q ss_pred             HHHHHHhC--------CcEeccCCCCceEeecCCCceEEEeeeccccc
Q 004835          306 ALASLHKQ--------GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVG  345 (728)
Q Consensus       306 aL~yLHs~--------gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~  345 (728)
                      -..||+.+        .++|+|+.+.||+|+..+. +=|+||+++.+.
T Consensus       183 ~~~Wl~~~~p~~~~~~~lvHGD~~~gNlii~~~~~-~gVlDwe~~~lG  229 (321)
T COG3173         183 LIKWLEANRPPWAGPPVLVHGDYRPGNLIIDPGRP-TGVLDWELATLG  229 (321)
T ss_pred             HHHHHHhcCCCcCCCceeeeCCcccCCEEEeCCCe-eEEEeccccccC
Confidence            24455432        5899999999999994444 779999999864

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=95.53  E-value=0.11  Score=55.62  Aligned_cols=30  Identities=30%  Similarity=0.588  Sum_probs=25.5

Q ss_pred             CCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          313 QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       313 ~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .+++|+|+.+.||+++ . +.+.|+||+.+..
T Consensus       187 ~~liHgD~~~~Nil~~-~-~~i~lIDfd~~~~  216 (313)
T TIGR02906       187 RGFCHQDYAYHNILLK-D-NEVYVIDFDYCTI  216 (313)
T ss_pred             CceEcCCCCcccEEEe-C-CcEEEEECccccc
Confidence            4799999999999998 4 4578999998764

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=95.48  E-value=0.11  Score=57.52  Aligned_cols=72  Identities=17%  Similarity=0.190  Sum_probs=48.3

Q ss_pred             EecccCceEEEEEEEcCCCeEEEEEecc----C-----cCchhHHHHHHHHHHhcCC--CCceEEecceEEeCCeeEEEE
Q 004835          208 EEGSGGYGTVYRARRKNDGTVVAIKCPH----A-----NASKHYVSNELRMLERFGG--KNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~~g~~VAIK~i~----~-----~~~~~~~~~Ei~iL~~L~h--~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .||.|.-..||++.....++.|+||.-.    .     .....+...|...|+....  |.++++++.+  +.....+||
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~~--D~e~~~~vM   79 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFHF--DTEMAVTVM   79 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEEE--ccccceehH
Confidence            4799999999999985444789999632    1     1223455677777776542  4446665543  456667999


Q ss_pred             eccCC
Q 004835          277 EHVKH  281 (728)
Q Consensus       277 E~~~~  281 (728)
                      |+++.
T Consensus        80 EdL~~   84 (370)
T TIGR01767        80 EDLSH   84 (370)
T ss_pred             hhCcc
Confidence            99864

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=95.19  E-value=0.088  Score=57.74  Aligned_cols=130  Identities=21%  Similarity=0.306  Sum_probs=79.1

Q ss_pred             CceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCc-----eEEecc----eEEeCCeeEEEEeccCCCC
Q 004835          213 GYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNF-----IIKYEG----CFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       213 ~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~-----Ivkl~~----~~~~~~~~~LV~E~~~~~~  283 (728)
                      .-..||+.... +|+ +++|+........++.-|+..+..|....+     +..+-|    .+..+.+.+-|++|++|..
T Consensus        37 ~eN~~f~~~~~-~g~-~iLki~~~~~~~~~i~~el~~l~~La~~~i~v~~Pl~~~dG~~l~~~~~~~r~a~lf~~l~G~~  114 (331)
T COG2334          37 EENSNFRVQTE-DGR-YILKIYRPGWTRAEIPFELALLQHLAERGIPVPAPLPSLDGELLEALSGGPRPAALFEYLPGRP  114 (331)
T ss_pred             ccCceEEEEec-CCC-eEEEEecCCCCHHHHHHHHHHHHHHHHcCCCCCCCccCCCcchhhhccCCceeEEEEEecCCcC
Confidence            44568888774 344 499998877566677788888887754331     111111    1122237788999999876


Q ss_pred             hHH-H-----------h-------hc-----------CChH----HH---------HHHHHHHHHHHHHHHhC-------
Q 004835          284 PEV-L-----------K-------KE-----------IDLS----QL---------QWYGYCLFRALASLHKQ-------  313 (728)
Q Consensus       284 l~~-l-----------~-------~~-----------l~~~----~~---------~~i~~QIl~aL~yLHs~-------  313 (728)
                      +.. .           .       +.           ..|.    ..         .....++...+..+.+.       
T Consensus       115 ~~~~~~~~~~~~lG~~LgrlH~a~~~f~~~~p~~~~~~~w~~~~~~~~~~~~~~~~~~l~a~~~~~~~~~~~~~~~~lp~  194 (331)
T COG2334         115 LERDDNAEQLEELGRMLGRLHLALRGFPFERPNALRRLEWDILEPRALLRLDLVEPEDLRAALLAALDRLLARLPAHLPA  194 (331)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHhCcCCccCCCcccccchhhhcchhhhhhcccCchhhHHHHHHHHHHHHhhchhhCCc
Confidence            551 1           0       00           1121    00         11233444555555542       


Q ss_pred             -C--cEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          314 -G--IVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       314 -g--IIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                       +  |||+|+.|.||+++.++....++|||-+..
T Consensus       195 ~~~~iIH~D~~~~NVl~d~~~~~~g~iDFdDa~~  228 (331)
T COG2334         195 LGDQIIHGDLHPDNVLFDDDTDVSGFIDFDDAGY  228 (331)
T ss_pred             ccceeeecCCCccceeEcCCCCeeeEEEcccccc
Confidence             4  999999999999994433477999999875

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=94.30  E-value=0.051  Score=55.20  Aligned_cols=31  Identities=39%  Similarity=0.519  Sum_probs=21.0

Q ss_pred             CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          314 GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       314 gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .+.|.||.|.|||++..++.++|+||..|..
T Consensus       144 v~cHnDl~~~Nil~~~~~~~~~lIDfEya~~  174 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDGEVKLIDFEYAGY  174 (211)
T ss_dssp             EEE-S--SGGGEEETSSSSCEEE--GTT-EE
T ss_pred             eEeeccCccccEEeccCCCeEEEecHHHHhh
Confidence            5899999999999943677899999998864

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PRK12396 5-methylribose kinase; Reviewed

Probab=94.29  E-value=0.16  Score=56.94  Aligned_cols=74  Identities=19%  Similarity=0.214  Sum_probs=50.8

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEecc----C----cCchhHHHHHHHHHHhcC--CCCceEEecceEEeCCeeEEE
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPH----A----NASKHYVSNELRMLERFG--GKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~----~----~~~~~~~~~Ei~iL~~L~--h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      .+.||.|.-..||++.+...++.|+||.-.    .    ....++...|..+|+.+.  -|.++++++.+  +.....+|
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~vy~~--D~e~~~~v  111 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKVYLF--DSVMNCCV  111 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeEEEE--CcHHhhHH
Confidence            567899999999999985446789999632    1    122455667877777654  24456666643  45667889


Q ss_pred             EeccCC
Q 004835          276 LEHVKH  281 (728)
Q Consensus       276 ~E~~~~  281 (728)
                      ||+++.
T Consensus       112 MEdL~~  117 (409)
T PRK12396        112 MEDLSD  117 (409)
T ss_pred             HHhCcc
Confidence            998864

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=94.16  E-value=0.042  Score=62.60  Aligned_cols=96  Identities=24%  Similarity=0.263  Sum_probs=68.7

Q ss_pred             CchhHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHhCCch-HH-HHHHhccCCCCCcchhhcccCCCCCCchhhhhhhc
Q 004835          571 PKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED-LW-EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLIT  648 (728)
Q Consensus       571 ~~~DIWSlG~il~eLltG~~PF~~~~~~~l~~i~~~~G~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (728)
                      +|+||||+|.|+.++.-|...+..-.......++...+.-+ .. ..+..+                             
T Consensus       110 pKsdVwsl~~i~~el~L~~~l~~~~~~s~~l~~i~k~~~~d~~~~~~a~e~-----------------------------  160 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGISLEAELTESEYLEILLKYYTDDQELLSTAMEH-----------------------------  160 (725)
T ss_pred             cchhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHH-----------------------------
Confidence            49999999999999999998886655543333333333211 10 111000                             


Q ss_pred             cCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhcchHh
Q 004835          649 KRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQ  698 (728)
Q Consensus       649 ~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~  698 (728)
                         .+.-..+..+.++..+|+...|..||...++++|+-|..+-..+.++
T Consensus       161 ---~~~~~~d~~~~~~~~~c~~~~~~ir~l~~~~~k~~i~~ev~~~~t~e  207 (725)
T KOG1093|consen  161 ---LIQLLADKKRLPLLKKCLWLEPIIRPLPMELSKRCSFTEVYKDLTVE  207 (725)
T ss_pred             ---HHHHhhhHhHHHHhccCCccccccccchhHHhcCccHHHHHhhhhHH
Confidence               22235677889999999999999999999999999999997777773

>PLN02756 S-methyl-5-thioribose kinase

Probab=93.95  E-value=0.7  Score=52.19  Aligned_cols=73  Identities=15%  Similarity=0.101  Sum_probs=49.9

Q ss_pred             EEEEecccCceEEEEEEEcCCCeEEEEEecc-----Cc----CchhHHHHHHHHHHhcCC--CCceEEecceEEeCCeeE
Q 004835          205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPH-----AN----ASKHYVSNELRMLERFGG--KNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       205 i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~-----~~----~~~~~~~~Ei~iL~~L~h--~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..+.||.|.-..||+...  .+..|+||.-.     ..    ....+...|...|+.+..  |..+++++.+..  +..+
T Consensus        36 ~~~eiggGn~N~VyrV~~--~~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~de--d~~v  111 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVS--SSGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDR--TMAL  111 (418)
T ss_pred             eEEEcCCCceeeEEEEEc--CCccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECC--CCCE
Confidence            366889999999999987  35579999744     11    133444566777766541  223777776655  5578


Q ss_pred             EEEeccCC
Q 004835          274 FVLEHVKH  281 (728)
Q Consensus       274 LV~E~~~~  281 (728)
                      ++||++++
T Consensus       112 lvME~L~~  119 (418)
T PLN02756        112 IGMRYLEP  119 (418)
T ss_pred             EEEeecCC
Confidence            89999976

>PRK11768 serine/threonine protein kinase; Provisional

Probab=93.81  E-value=0.68  Score=50.58  Aligned_cols=71  Identities=13%  Similarity=0.137  Sum_probs=43.6

Q ss_pred             cCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCc-eEE---ecc--eEEeCCeeEEEEeccCCCC
Q 004835          212 GGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNF-IIK---YEG--CFKCGDSDCFVLEHVKHDR  283 (728)
Q Consensus       212 G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~-Ivk---l~~--~~~~~~~~~LV~E~~~~~~  283 (728)
                      +.-..||+... .+|..+++|+.+... ....+..|+..+..|....+ ++.   .-+  ....++..+.|+++++|..
T Consensus        36 s~eN~vy~v~~-~~~~~~vlKv~r~~~~~~~~i~~E~~~l~~L~~~gipv~~p~~~~G~~~~~~~g~~~~l~~~~~G~~  113 (325)
T PRK11768         36 SYENRVYQFGD-EDGRRVVAKFYRPERWSDAQILEEHAFALELAEAEIPVVAPLAFNGQTLHEHQGFRFALFPRRGGRA  113 (325)
T ss_pred             cccceEEEEec-CCCCEEEEEEcCcccCCHHHHHHHHHHHHHHHHCCCCCCCCccCCCCEEEEECCEEEEEEeeeCCCC
Confidence            34457898876 356789999886443 45566778888776643221 111   111  1223466788999988753

>PRK06148 hypothetical protein; Provisional

Probab=93.44  E-value=0.65  Score=58.46  Aligned_cols=77  Identities=12%  Similarity=0.104  Sum_probs=44.6

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCC-------CCceEEecceE----Ee-CC--ee
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGG-------KNFIIKYEGCF----KC-GD--SD  272 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h-------~n~Ivkl~~~~----~~-~~--~~  272 (728)
                      +.|+ |.+-.+|+... .+|..+++|+.+.......+..|..+|..|..       |..|...-+-+    .. .+  ..
T Consensus        31 ~~L~-s~~d~nf~v~~-~~g~~yVLKi~~~~~~~~~~~~q~~~L~hL~~~~~glpvP~~i~t~~G~~~~~v~~~~G~~~~  108 (1013)
T PRK06148         31 TPLD-GERDLNFRLTT-DDGADYILKIVNPSEPRVESDFQTAALDHLAAVAPDLPVPRLIPSLSGASLASAQDPDGEPRL  108 (1013)
T ss_pred             eecC-CcCCceEEEEe-CCCCeEEEEEcCCccchhHHHHHHHHHHHHHhhCCCCCcCeeeecCCCCeEEEeecCCCceEE
Confidence            3453 34577888875 36778999998865555555566667665532       12122121211    11 12  46


Q ss_pred             EEEEeccCCCChH
Q 004835          273 CFVLEHVKHDRPE  285 (728)
Q Consensus       273 ~LV~E~~~~~~l~  285 (728)
                      +.+++|++|..+.
T Consensus       109 vrLl~~l~G~~l~  121 (1013)
T PRK06148        109 LRLLSWLPGTPLA  121 (1013)
T ss_pred             EEEEeccCCCcHH
Confidence            7789999986553

>PTZ00384 choline kinase; Provisional

Probab=93.22  E-value=0.75  Score=51.58  Aligned_cols=75  Identities=20%  Similarity=0.146  Sum_probs=48.3

Q ss_pred             EEEecccCceEEEEEEEcCCC------eEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          206 EEEEGSGGYGTVYRARRKNDG------TVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g------~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ++.|..|-...+|++......      +.|++++..... ..-.-.+|+.++..+....+-.++++.+..    ++|.||
T Consensus        55 i~~l~gGLTN~l~~v~~~~~~~~~~~~k~Vl~R~~g~~~~l~IdR~~E~~i~~~Ls~~glgP~l~~~f~~----g~l~ef  130 (383)
T PTZ00384         55 IKKMNNGITNQVYQATLVDGDKDRYPIKSVCIKKSSTYNSLVIDNDLQYNIAKLLGDNNFGPKIIGRFGD----FTIQEW  130 (383)
T ss_pred             EEEeCCcccceEEEEEecCCCCCccccceEEEEeccCCCceEeccHHHHHHHHHHHhCCCCCeEEEecCC----EEEEEE
Confidence            345556888899999764321      225555432211 111124689999999888767888888753    699999


Q ss_pred             cCCCCh
Q 004835          279 VKHDRP  284 (728)
Q Consensus       279 ~~~~~l  284 (728)
                      ++|..+
T Consensus       131 IeGr~l  136 (383)
T PTZ00384        131 VEGNTM  136 (383)
T ss_pred             eccccC
Confidence            988654

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=92.87  E-value=0.66  Score=50.10  Aligned_cols=30  Identities=30%  Similarity=0.605  Sum_probs=26.3

Q ss_pred             CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          314 GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       314 gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +++|+|+.+.|||++ +++.+.++||..+..
T Consensus       197 ~lcHgD~~~~Nvl~~-~~~~~~iIDfd~~~~  226 (309)
T TIGR02904       197 VLVHGKLSLSHFLYD-ETRGGYFINFEKASF  226 (309)
T ss_pred             eeeCCCCcHHhEEEc-CCCCEEEEEhhhccc
Confidence            799999999999998 555688999999875

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=92.21  E-value=0.023  Score=71.38  Aligned_cols=141  Identities=10%  Similarity=-0.125  Sum_probs=81.0

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCC-eEEEEEeccCcC-------chhHHHHHHHHHHhcCCCCceEEecceEE--e
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDG-TVVAIKCPHANA-------SKHYVSNELRMLERFGGKNFIIKYEGCFK--C  268 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g-~~VAIK~i~~~~-------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~--~  268 (728)
                      ++..|++.--+|.|.++   ++.+.... ..+-+|+.+.-.       ..+....|...++.+.|++ +...+.-..  +
T Consensus      1227 ~~e~~EV~l~i~~~~~~---R~k~Lr~kid~Fk~~I~ke~d~e~LsePlkemll~e~de~~~~~h~~-~~~~p~rI~ps~ 1302 (2724)
T KOG1826|consen 1227 AMEHSEVNLGISNHFHF---RNKWLRSKIDWFKFSIYKEYDFENLSEPLKEMLLSERDELREAKHYL-TEVDPLRIPPSE 1302 (2724)
T ss_pred             Hhhhhheeeecccceee---ccchHhhhhceeEEEeehhhhHHHHhhHHHHhhhhhhhhhhhhhcee-eecccccCCCCC
Confidence            34566665555655554   34332111 234455443211       1222334444555667877 333322221  2


Q ss_pred             CCeeEEEEeccCCCChHHHh-hc------CChHHHHHHHHHHHHHHHHHHhC-----CcEeccCCCCceEeecCCCceEE
Q 004835          269 GDSDCFVLEHVKHDRPEVLK-KE------IDLSQLQWYGYCLFRALASLHKQ-----GIVHRDVKPGNFLFSCKAVKGYL  336 (728)
Q Consensus       269 ~~~~~LV~E~~~~~~l~~l~-~~------l~~~~~~~i~~QIl~aL~yLHs~-----gIIHRDIKPeNILld~~~~~~kL  336 (728)
                      ....|.+++|+.+|.+...+ +.      +...-+.....+.+.+..-+|+.     -.+|+++|+-|.+|. .+..+++
T Consensus      1303 s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIV-tny~v~~ 1381 (2724)
T KOG1826|consen 1303 STEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIV-TNYNVKL 1381 (2724)
T ss_pred             ChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhhhhhhhcccee-cCCcccc
Confidence            34568889999887765543 22      22233333334446677777764     279999999999999 6677999


Q ss_pred             Eeeecccc
Q 004835          337 IDFNLAMV  344 (728)
Q Consensus       337 ~DFGlA~~  344 (728)
                      .++|+.++
T Consensus      1382 gk~gLdKI 1389 (2724)
T KOG1826|consen 1382 GKGGLDKI 1389 (2724)
T ss_pred             cccccccc
Confidence            99999874

>PRK06149 hypothetical protein; Provisional

Probab=91.89  E-value=0.82  Score=57.37  Aligned_cols=74  Identities=16%  Similarity=0.144  Sum_probs=41.9

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCC-------CceEEecceE----E--eCCeeE
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGK-------NFIIKYEGCF----K--CGDSDC  273 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~-------n~Ivkl~~~~----~--~~~~~~  273 (728)
                      ..|+.+. -.+|+....  +..+++|+.+.......+..|..++..|...       ..|....+-.    .  .....+
T Consensus        37 ~~L~s~~-d~nf~v~t~--~~~yVLKi~~~~~~~~~l~~e~~~l~hL~~~~~glpvp~pi~t~~G~~~~~~~~~g~~~~v  113 (972)
T PRK06149         37 TELGSQQ-DRNFRVDSD--GGRFVLKICHAAYAAVELEAQHAALRHLAEREPALRVPVVIPALDGEELLTLDVRGQGLRV  113 (972)
T ss_pred             EecCCcC-cceEEEEec--CCcEEEEeCCccCChHHHHHHHHHHHHHHhhCCCCCCceeeECCCCCeEEEEecCCceEEE
Confidence            3454333 367877653  3578889987655555666777777666432       2122111211    1  123567


Q ss_pred             EEEeccCCCC
Q 004835          274 FVLEHVKHDR  283 (728)
Q Consensus       274 LV~E~~~~~~  283 (728)
                      -+++|++|..
T Consensus       114 rL~~~l~G~~  123 (972)
T PRK06149        114 RLLDYLPGQP  123 (972)
T ss_pred             EEEEecCCcc
Confidence            7899998754

>PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties []

Probab=91.78  E-value=0.6  Score=49.38  Aligned_cols=74  Identities=18%  Similarity=0.238  Sum_probs=50.3

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC-CCCh
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK-HDRP  284 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~-~~~l  284 (728)
                      ..+..|..+.|+.++. .+|..+++|+.........-......|+..+... .++++..-  ...-.|++|.+. +.++
T Consensus         8 ~~~~~g~~s~V~pv~~-~dG~~avLKl~~p~~~~~~E~~g~~~L~~w~G~G-aVrll~~d--~~~~AlLLErl~~g~~L   82 (253)
T PF04655_consen    8 GPPAHGSSSLVVPVRR-ADGTPAVLKLAPPHAEAEHEARGEAALRWWNGRG-AVRLLAAD--PERGALLLERLDPGRSL   82 (253)
T ss_pred             CCCCCCcceEEEEEEc-CCCCeEEEEecCCcccchhhhhHHhHhheeCCCC-ceeeeccc--cccchhhhhhccCCCch
Confidence            3466789999999986 4799999999765443221112235688888777 78888764  345678888883 3344

Aminoglycoside phosphotransferases achieve inactivation of these enzymes by phosphorylation, utilising ATP. Likewise, hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0006468 protein phosphorylation, 0019748 secondary metabolic process

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=90.58  E-value=1.1  Score=46.48  Aligned_cols=113  Identities=19%  Similarity=0.206  Sum_probs=70.8

Q ss_pred             cCceEEEEEEEcCCCeEEEEEeccC-cC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCCChHHHh
Q 004835          212 GGYGTVYRARRKNDGTVVAIKCPHA-NA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLK  288 (728)
Q Consensus       212 G~fG~Vy~a~~~~~g~~VAIK~i~~-~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~  288 (728)
                      ++.++.-.+...- | ...+|++.. ..  ....+.++.+++.++..   |+++..-  .+..+-+++|+|-.-..-.  
T Consensus        73 ~gNsTl~~~kt~i-G-~L~lKKi~slp~~~~~~~y~nky~v~ArmhG---ilrL~ND--n~~~yGvIlE~Cy~~~i~~--  143 (308)
T PF07387_consen   73 NGNSTLLIGKTKI-G-PLFLKKIRSLPCCINDALYFNKYRVFARMHG---ILRLKND--NNYKYGVILERCYKIKINF--  143 (308)
T ss_pred             CCceEEEEecccc-c-hhhhhhccCCCcccchhhhhhhhhHHHHhhh---eeEeecC--CCceeEEEEeeccCcccch--
Confidence            4444444444322 3 334454442 21  24456788999999854   8888743  4556778899876432111  


Q ss_pred             hcCChHHHHHHHHHHHHHHHHHHh--CCcEeccCCCCceEeecCCCceEEEeeecc
Q 004835          289 KEIDLSQLQWYGYCLFRALASLHK--QGIVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       289 ~~l~~~~~~~i~~QIl~aL~yLHs--~gIIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                             . .++..=+.+|.-.|+  .+.+|+|..|+||+-| ..+.+||.|=+.-
T Consensus       144 -------~-N~i~agi~~L~~fH~~~~~~lHGD~np~NiM~D-~~G~lKlVDP~~L  190 (308)
T PF07387_consen  144 -------S-NFITAGIKDLMDFHSENQHCLHGDCNPDNIMCD-KFGYLKLVDPVCL  190 (308)
T ss_pred             -------h-HHHHHhHHHHHHhhccCCCeecCCCChhheeec-CCCCEEecChhhh
Confidence                   1 111111467888895  4799999999999999 6667999997754

The function of this family is unknown.

>PTZ00296 choline kinase; Provisional

Probab=90.45  E-value=2.5  Score=48.31  Aligned_cols=74  Identities=11%  Similarity=0.045  Sum_probs=48.3

Q ss_pred             EEEEecccCceEEEEEEEcCC--------CeEEEEEeccCcCc-hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          205 VEEEEGSGGYGTVYRARRKND--------GTVVAIKCPHANAS-KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       205 i~~~LG~G~fG~Vy~a~~~~~--------g~~VAIK~i~~~~~-~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      -++.|..|-.-.+|++.....        ++.|.+++.-.... --.-.+|..++..+....+-.++++.+.    -+.|
T Consensus       109 ~i~~l~gGlTN~~f~v~~~~~~~~~~~~~~~~~lvRiyG~~te~lIdR~~E~~v~~~ls~~gi~P~l~~~f~----gg~I  184 (442)
T PTZ00296        109 RVNQILSGLTNQLFEVSLKEETANNYPSIRRRVLFRIYGKDVDELYNPISEFEVYKTMSKYRIAPQLLNTFS----GGRI  184 (442)
T ss_pred             EEEEecCcccCceEEEEecCCCCccccCcCceEEEEecCCCccceeCHHHHHHHHHHHHHCCCCCceEEEeC----CCEE
Confidence            455677777778898875421        56899998754321 1123468888888776665566776653    2457


Q ss_pred             EeccCCC
Q 004835          276 LEHVKHD  282 (728)
Q Consensus       276 ~E~~~~~  282 (728)
                      .||+++.
T Consensus       185 ~efi~g~  191 (442)
T PTZ00296        185 EEWLYGD  191 (442)
T ss_pred             EEeeCCc
Confidence            8998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	728
4f99_A	361	Human Cdc7 Kinase In Complex With Dbf4 And Nucleoti		4e-14
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		6e-10
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		4e-06
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		1e-09
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		9e-07
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		2e-09
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		4e-06
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		2e-09
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		2e-09
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		9e-07
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-09
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		2e-09
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		2e-09
4exu_A	371	Mapk13, Inactive Form Length = 371		2e-09
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		2e-09
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		2e-09
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		7e-07
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		2e-09
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		7e-07
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		2e-09
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		6e-07
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		2e-09
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		6e-07
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		2e-09
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		5e-07
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		2e-09
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		3e-09
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		7e-07
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		3e-09
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		9e-07
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		3e-09
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		9e-07
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		3e-09
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		7e-07
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		3e-09
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		5e-07
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		3e-09
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		5e-07
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		4e-09
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		8e-07
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		4e-09
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		5e-07
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		4e-09
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		5e-07
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		4e-09
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		4e-07
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		4e-09
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		9e-07
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		5e-09
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		6e-09
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		5e-07
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		6e-09
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		4e-06
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		7e-09
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		9e-07
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		7e-09
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		8e-09
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		4e-06
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		1e-08
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		4e-06
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		1e-08
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		4e-06
3u87_A	349	Structure Of A Chimeric Construct Of Human Ck2alpha		1e-08
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		1e-08
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		5e-06
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		1e-08
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		1e-08
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		4e-06
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		1e-08
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		4e-06
3soa_A	444	Full-Length Human Camkii Length = 444		1e-08
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		1e-08
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		4e-06
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		1e-08
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		5e-07
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		1e-08
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		4e-06
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		1e-08
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		4e-06
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		1e-08
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		4e-06
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		1e-08
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		4e-06
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		1e-08
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		4e-06
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		1e-08
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		4e-06
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		1e-08
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		1e-08
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		4e-06
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-08
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		4e-06
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		2e-08
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		4e-06
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		2e-08
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		4e-06
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		2e-08
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		4e-06
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		2e-08
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		4e-06
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		2e-08
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		4e-06
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		2e-08
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		4e-06
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-08
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		4e-06
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-08
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		4e-06
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		2e-08
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		4e-06
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		2e-08
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		4e-06
3ofm_A	350	Structure Of A Human Ck2alpha Prime, The Paralog Is		2e-08
3e3b_X	339	Crystal Structure Of Catalytic Subunit Of Human Pro		2e-08
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		2e-08
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		4e-06
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-08
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		4e-06
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		2e-08
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		4e-06
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		2e-08
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		2e-08
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		2e-08
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		2e-08
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		2e-08
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		2e-08
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		2e-08
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		2e-08
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		2e-08
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		2e-08
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		2e-08
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		2e-08
3hec_A	348	P38 In Complex With Imatinib Length = 348		2e-08
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		2e-08
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		2e-08
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		2e-08
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		2e-08
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		2e-08
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		2e-08
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		2e-08
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		3e-08
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		3e-08
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		3e-08
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		3e-08
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		3e-08
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		3e-08
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		3e-08
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		3e-08
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		3e-08
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		3e-08
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		3e-08
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		3e-08
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		3e-08
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		3e-08
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		3e-08
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		3e-08
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		3e-08
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		3e-08
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		3e-08
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		3e-08
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		3e-08
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		3e-08
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		3e-08
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		3e-08
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		3e-08
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		3e-08
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		3e-08
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		3e-08
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		3e-08
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		3e-08
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		3e-08
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		3e-08
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		3e-08
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		3e-08
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		3e-08
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		3e-08
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		3e-08
2oza_B	366	Structure Of P38alpha Complex Length = 366		3e-08
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		3e-08
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		3e-08
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		3e-08
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		4e-06
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		3e-08
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		3e-08
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		4e-08
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		4e-06
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		4e-08
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		4e-08
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		4e-08
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		5e-08
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		5e-08
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		2e-04
1na7_A	329	Crystal Structure Of The Catalytic Subunit Of Human		5e-08
1na7_A	329	Crystal Structure Of The Catalytic Subunit Of Human		9e-08
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		5e-08
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		5e-08
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		6e-08
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		4e-06
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		6e-08
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		4e-06
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		6e-08
1jwh_A	337	Crystal Structure Of Human Protein Kinase Ck2 Holoe		7e-08
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		7e-08
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		3e-04
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		8e-08
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		3e-04
3h30_A	334	Crystal Structure Of The Catalytic Subunit Of Human		8e-08
2r7i_A	335	Crystal Structure Of Catalytic Subunit Of Protein K		8e-08
3nga_A	333	Human Ck2 Catalytic Domain In Complex With Cx-4945		8e-08
4dgl_C	335	Crystal Structure Of The Ck2 Tetrameric Holoenzyme		8e-08
3q9w_A	336	Crystal Structure Of Human Ck2 Alpha In Complex Wit		8e-08
3mb6_A	331	Human Ck2 Catalytic Domain In Complex With A Difura		8e-08
3juh_A	335	Crystal Structure Of A Mutant Of Human Protein Kina		8e-08
1pjk_A	334	Crystal Structure Of A C-terminal Deletion Mutant O		8e-08
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		8e-08
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		2e-05
3bqc_A	335	High Ph-Value Crystal Structure Of Emodin In Comple		8e-08
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		8e-08
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		8e-08
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		9e-08
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		9e-08
3nsz_A	330	Human Ck2 Catalytic Domain In Complex With Amppn Le		9e-08
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		9e-08
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		9e-08
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		6e-04
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		9e-08
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		9e-08
3q04_A	328	Crystal Structure Of The Apo-Form Of Human Ck2 Alph		9e-08
2zjw_A	340	Crystal Structure Of Human Ck2 Alpha Complexed With		9e-08
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		9e-08
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		9e-08
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		9e-08
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		9e-08
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		9e-08
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		9e-08
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		9e-08
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		1e-07
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		1e-07
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		1e-07
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		1e-07
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		1e-07
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		1e-07
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		1e-05
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		1e-07
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		1e-07
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		1e-07
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		1e-07
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		2e-07
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		2e-07
3uc3_A	361	The Crystal Structure Of Snf1-Related Kinase 2.3 Le		2e-07
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		2e-07
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		4e-06
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		2e-07
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		2e-07
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		3e-07
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		3e-07
3eb0_A	383	Crystal Structure Of Cgd4_240 From Cryptosporidium		3e-07
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		3e-07
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		3e-07
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		3e-07
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		4e-07
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		4e-07
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		4e-07
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		4e-07
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		5e-07
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		5e-07
3kk9_A	282	Camkii Substrate Complex B Length = 282		5e-07
3kk8_A	284	Camkii Substrate Complex A Length = 284		5e-07
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		5e-07
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		1e-06
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		2e-06
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		3e-05
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		2e-06
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		5e-05
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		2e-06
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		2e-06
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		3e-05
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		2e-06
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-06
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		2e-04
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		3e-06
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		3e-06
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		3e-06
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		3e-06
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		2e-04
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		4e-06
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-06
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-04
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		4e-06
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		2e-04
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		4e-06
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		5e-06
3udb_A	317	Crystal Structure Of Snrk2.6 Length = 317		6e-06
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		6e-06
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		6e-06
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		2e-04
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		6e-06
3zut_A	362	The Structure Of Ost1 (D160a) Kinase Length = 362		6e-06
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		7e-06
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		9e-06
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		1e-05
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		1e-05
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		1e-05
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		1e-05
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		2e-04
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		1e-05
4anm_A	335	Complex Of Ck2 With A Cdc7 Inhibitor Length = 335		1e-05
4anm_A	335	Complex Of Ck2 With A Cdc7 Inhibitor Length = 335		2e-04
3pvg_A	331	Crystal Structure Of Z. Mays Ck2 Alpha Subunit In C		1e-05
3pvg_A	331	Crystal Structure Of Z. Mays Ck2 Alpha Subunit In C		2e-04
2pvh_A	352	Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]tri		1e-05
2pvh_A	352	Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]tri		1e-04
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		1e-05
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		3e-04
2qc6_A	332	Protein Kinase Ck2 In Complex With Dbc Length = 332		1e-05
2qc6_A	332	Protein Kinase Ck2 In Complex With Dbc Length = 332		2e-04
1ds5_A	332	Dimeric Crystal Structure Of The Alpha Subunit In C		1e-05
1ds5_A	332	Dimeric Crystal Structure Of The Alpha Subunit In C		2e-04
4dgm_A	326	Crystal Structure Of Maize Ck2 In Complex With The		2e-05
4dgm_A	326	Crystal Structure Of Maize Ck2 In Complex With The		2e-04
1daw_A	327	Crystal Structure Of A Binary Complex Of Protein Ki		2e-05
1daw_A	327	Crystal Structure Of A Binary Complex Of Protein Ki		2e-04
4dgn_A	326	Crystal Structure Of Maize Ck2 In Complex With The		2e-05
4dgn_A	326	Crystal Structure Of Maize Ck2 In Complex With The		2e-04
3kxg_A	327	Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subun		2e-05
3kxg_A	327	Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subun		2e-04
1m2p_A	325	Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro- Anthra		2e-05
1m2p_A	325	Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro- Anthra		2e-04
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		2e-05
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		2e-04
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		2e-05
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		2e-05
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		2e-04
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		2e-05
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		2e-05
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		5e-05
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		3e-05
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		3e-05
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		3e-05
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		3e-05
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		3e-05
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		4e-05
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		4e-05
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		4e-05
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		4e-05
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		4e-05
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		4e-05
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		4e-05
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		4e-05
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		5e-05
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		5e-05
3uib_A	362	Map Kinase Lmampk10 From Leishmania Major In Comple		5e-05
3pg1_A	362	Map Kinase Lmampk10 From Leishmania Major (1.95 Ang		5e-05
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		6e-05
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		6e-05
4fie_A	423	Full-Length Human Pak4 Length = 423		6e-05
4fie_A	423	Full-Length Human Pak4 Length = 423		1e-04
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		6e-05
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		6e-05
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		2e-04
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		6e-05
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		6e-05
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		2e-04
1yhs_A	273	Crystal Structure Of Pim-1 Bound To Staurosporine L		6e-05
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		6e-05
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		2e-04
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		7e-05
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		7e-05
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		7e-05
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		7e-05
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		7e-05
1xws_A	313	Crystal Structure Of The Human Pim1 Kinase Domain L		7e-05
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		7e-05
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		2e-04
3dcv_A	328	Crystal Structure Of Human Pim1 Kinase Complexed Wi		8e-05
3cxw_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		8e-05
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		8e-05
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		8e-05
2bil_B	313	The Human Protein Kinase Pim1 In Complex With Its C		8e-05
2bik_B	313	Human Pim1 Phosphorylated On Ser261 Length = 313		8e-05
3jpv_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		8e-05
3cy3_A	314	Crystal Structure Of Human Proto-Oncogene Serine Th		8e-05
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		8e-05
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		8e-05
3ma3_A	313	Crystal Structure Of Human Proto-Oncogene Serine Th		8e-05
3jxw_A	294	Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-		8e-05
2j2i_B	312	Crystal Structure Of The Humab Pim1 In Complex With		8e-05
3r00_A	299	The Discovery Of Novel Benzofuran-2-Carboxylic Acid		8e-05
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		8e-05
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		8e-05
3f2a_A	300	Crystal Structure Of Human Pim-1 In Complex With Da		8e-05
2obj_A	333	Crystal Structure Of Human Pim-1 Kinase In Complex		9e-05
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		9e-05
1xqz_A	300	Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolut		9e-05
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		9e-05
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		1e-04
1ywv_A	293	Crystal Structures Of Proto-Oncogene Kinase Pim1: A		9e-05
2xj0_A	301	Protein Kinase Pim-1 In Complex With Fragment-4 Fro		9e-05
2xiy_A	301	Protein Kinase Pim-1 In Complex With Fragment-2 Fro		9e-05
2xix_A	301	Protein Kinase Pim-1 In Complex With Fragment-1 Fro		9e-05
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		1e-04
4alv_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		1e-04
2vag_A	339	Crystal Structure Of Di-Phosphorylated Human Clk1 I		1e-04
3a99_A	320	Structure Of Pim-1 Kinase Crystallized In The Prese		1e-04
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		1e-04
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		1e-04
3rgf_A	405	Crystal Structure Of Human Cdk8CYCC Length = 405		1e-04
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		1e-04
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		1e-04
3uix_A	298	Crystal Structure Of Pim1 Kinase In Complex With Sm		1e-04
2i6l_A	320	Crystal Structure Of Human Mitogen Activated Protei		1e-04
3nie_A	429	Crystal Structure Of Pf11_0147 Length = 429		1e-04
3n9x_A	432	Crystal Structure Of Map Kinase From Plasmodium Ber		1e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		1e-04
4a7c_A	308	Crystal Structure Of Pim1 Kinase With Etp46546 Leng		1e-04
4dtk_A	276	Novel And Selective Pan-Pim Kinase Inhibitor Length		1e-04
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		1e-04
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		1e-04
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		1e-04
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		1e-04
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		1e-04
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		1e-04
3c4e_A	273	Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7		2e-04
4as0_A	273	Cyclometalated Phthalimides As Protein Kinase Inhib		2e-04
3hmn_A	342	Crystal Structure Of Human Mps1 Catalytic Domain In		2e-04
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		2e-04
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		2e-04
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		2e-04
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		2e-04
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		2e-04
2zmc_A	390	Crystal Structure Of Human Mitotic Checkpoint Kinas		2e-04
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		2e-04
2zmd_A	390	Crystal Structure Of Human Mps1 Catalytic Domain T6		2e-04
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-04
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-04
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		3e-04
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		3e-04
3cek_A	313	Crystal Structure Of Human Dual Specificity Protein		3e-04
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		3e-04
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		3e-04
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-04
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		3e-04
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		3e-04
3dbq_A	343	Crystal Structure Of Ttk Kinase Domain Length = 343		3e-04
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		3e-04
2x9e_A	317	Human Mps1 In Complex With Nms-P715 Length = 317		3e-04
3p1a_A	311	Structure Of Human Membrane-Associated Tyrosine- An		3e-04
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		3e-04
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		3e-04
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		3e-04
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		3e-04
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		3e-04
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		3e-04
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		3e-04
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		3e-04
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		3e-04
1yxs_A	293	Crystal Structure Of Kinase Pim1 With P123m Mutatio		3e-04
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		3e-04
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		3e-04
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		3e-04
3vqu_A	320	Crystal Structure Of Human Mps1 Catalytic Domain In		4e-04
3h9f_A	313	Crystal Structure Of Human Dual Specificity Protein		4e-04
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		4e-04
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		7e-04
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		4e-04
4hni_A	296	Crystal Structure Of Ck1e In Complex With Pf4800567		4e-04
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		4e-04
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		4e-04
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		4e-04
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		4e-04
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		4e-04
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		4e-04
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		4e-04
3sv0_A	483	Crystal Structure Of Casein Kinase-1 Like Protein I		5e-04
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		5e-04
3dls_A	335	Crystal Structure Of Human Pas Kinase Bound To Adp		5e-04
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		5e-04
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		5e-04
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		5e-04
3fme_A	290	Crystal Structure Of Human Mitogen-Activated Protei		5e-04
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		5e-04
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		6e-04
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		6e-04
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		6e-04
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		6e-04
3uys_A	296	Crystal Structure Of Apo Human Ck1d Length = 296		6e-04
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		6e-04
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		6e-04
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		6e-04
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		6e-04
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		7e-04
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		7e-04
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		7e-04
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		7e-04
1ckj_A	317	Casein Kinase I Delta Truncation Mutant Containing		8e-04
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		8e-04
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		8e-04
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		9e-04
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		9e-04

>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide Length = 361

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 25/165 (15%)
Query: 543 GKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNI 600
            ++++  P AGT GFRAPEVL +  +Q   +D+WSAGV  L L+ GR PF+   D    +
Sbjct: 198 SRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTAL 257
Query: 601 KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLI----TKRPDFLEV 656
             I  +RGS +  + AK      +F + +  +K +P  +L + C+ +    +  P     
Sbjct: 258 AQIMTIRGSRETIQAAK------TFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSD 311
Query: 657 I-------------PSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
           I             P   +DL+DK L +NP  RI+AE+AL H FF
Sbjct: 312 IQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALLHPFF 356

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 75/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V EHV  D    LKK +D S L        + Y + L + 
Sbjct: 64  HPN-IVKLLDVIHTENKLYLVFEHVDQD----LKKFMDASALTGIPLPLIKSYLFQLLQG 118
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 119 LAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 153

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 27/142 (19%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSED- 611
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 169 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDE 228
Query: 612 -LWE-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD---LVD 666
            +W  V  + + + SF               P+W      R DF +V+P    D   L+ 
Sbjct: 229 VVWPGVTSMPDYKPSF---------------PKWA-----RQDFSKVVPPLDEDGRSLLS 268
Query: 667 KCLTVNPRLRISAEDALKHEFF 688
           + L  +P  RISA+ AL H FF
Sbjct: 269 QMLHYDPNKRISAKAALAHPFF 290

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 1   SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 52
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 53  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDVVYLNLVLDYVPETVYRVARHY 112
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 113 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 172
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 173 LVRGEPNVSXICSRYYRAP 191

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 185 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 244
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 245 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 290
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 291 PTARLTPLEACAHSFF 306

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+     
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHK 312
           N I+K        +    V EHV  D    +       I L  ++ Y + L + LA  H 
Sbjct: 62  N-IVKLLDVIHTENKLYLVFEHVHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120
Query: 313 QGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             ++HRD+KP N L + + A+K  L DF LA
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIK--LADFGLA 149

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 223
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 224 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 265
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 266 MLHYDPNKRISAKAALAHPFF 286

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIK-----CPHANASKHYVSNELRMLERFGGKNFIIKY 262
           E G G +G VY AR   +  VVAIK        +N     +  E+R L++    N  I+Y
Sbjct: 61  EIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN-TIQY 119
Query: 263 EGCFKCGDSDCFVLEHV---KHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRD 319
            GC+    +   V+E+      D  EV KK +   ++    +   + LA LH   ++HRD
Sbjct: 120 RGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRD 179
Query: 320 VKPGNFLFS 328
           VK GN L S
Sbjct: 180 VKAGNILLS 188

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 19/200 (9%)
Query: 175 ISRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP 234
           +S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK  
Sbjct: 1   LSKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK-- 52
Query: 235 HANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------ 287
                K + + EL+++ +    N +      +  G+  D   L  V    PE +      
Sbjct: 53  KVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARH 112
Query: 288 ----KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM 343
               K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A 
Sbjct: 113 YSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK 172
Query: 344 VGFDGSFNQATLPGTKYVPP 363
               G  N + +    Y  P
Sbjct: 173 QLVRGEPNVSXICSRYYRAP 192

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 186 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 245
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 246 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 291
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 292 PTARLTPLEACAHSFF 307

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 67/140 (47%), Gaps = 26/140 (18%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF---GDPEQ--NIKDIAKLRG 608
           T  +RAPEVL +S +  P +D+WS G  +   M  R P F    D +Q   I D+  L G
Sbjct: 182 TLWYRAPEVLLQSSYATP-VDLWSVG-CIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPG 239
Query: 609 SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC 668
            ED W       R+ + P   + +KS  PI      K +T   +  +       DL+ KC
Sbjct: 240 EED-WP------RDVALPRQAFHSKSAQPIE-----KFVTDIDELGK-------DLLLKC 280
Query: 669 LTVNPRLRISAEDALKHEFF 688
           LT NP  RISA  AL H +F
Sbjct: 281 LTFNPAKRISAYSALSHPYF 300

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 67/140 (47%), Gaps = 26/140 (18%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF---GDPEQ--NIKDIAKLRG 608
           T  +RAPEVL +S +  P +D+WS G  +   M  R P F    D +Q   I D+  L G
Sbjct: 182 TLWYRAPEVLLQSSYATP-VDLWSVG-CIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPG 239
Query: 609 SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC 668
            ED W       R+ + P   + +KS  PI      K +T   +  +       DL+ KC
Sbjct: 240 EED-WP------RDVALPRQAFHSKSAQPIE-----KFVTDIDELGK-------DLLLKC 280
Query: 669 LTVNPRLRISAEDALKHEFF 688
           LT NP  RISA  AL H +F
Sbjct: 281 LTFNPAKRISAYSALSHPYF 300

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 67/140 (47%), Gaps = 26/140 (18%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF---GDPEQ--NIKDIAKLRG 608
           T  +RAPEVL +S +  P +D+WS G  +   M  R P F    D +Q   I D+  L G
Sbjct: 182 TLWYRAPEVLLQSSYATP-VDLWSVG-CIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPG 239
Query: 609 SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC 668
            ED W       R+ + P   + +KS  PI      K +T   +  +       DL+ KC
Sbjct: 240 EED-WP------RDVALPRQAFHSKSAQPIE-----KFVTDIDELGK-------DLLLKC 280
Query: 669 LTVNPRLRISAEDALKHEFF 688
           LT NP  RISA  AL H +F
Sbjct: 281 LTFNPAKRISAYSALSHPYF 300

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 19/141 (13%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDL 612
           T+ +RAPEV+    H    +DIWS G  +  ++ G+T F G D    +  I K+ G    
Sbjct: 204 TRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGT 263
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS---LFDLVDKCL 669
             V KL+++         AAKS    +LP+     T R DF ++ P +     DL++K L
Sbjct: 264 EFVQKLNDK---------AAKSYIQ-SLPQ-----TPRKDFTQLFPRASPQAADLLEKML 308
Query: 670 TVNPRLRISAEDALKHEFFAP 690
            ++   R++A  AL H FF P
Sbjct: 309 ELDVDKRLTAAQALTHPFFEP 329

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIK-----CPHANASKHYVSNELRMLERFGGKNFIIKY 262
           E G G +G VY AR   +  VVAIK        +N     +  E+R L++    N  I+Y
Sbjct: 22  EIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN-TIQY 80
Query: 263 EGCFKCGDSDCFVLEHV---KHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRD 319
            GC+    +   V+E+      D  EV KK +   ++    +   + LA LH   ++HRD
Sbjct: 81  RGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRD 140
Query: 320 VKPGNFLFS 328
           VK GN L S
Sbjct: 141 VKAGNILLS 149

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 20  SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 71
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 72  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 131
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 132 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 191
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 192 LVRGEPNVSXICSRYYRAP 210

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 204 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 263
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 264 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 309
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 310 PTARLTPLEACAHSFF 325

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 9   SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 60
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 61  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 120
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 121 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 180
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 181 LVRGEPNVSXICSRYYRAP 199

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 193 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 252
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 253 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 298
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 299 PTARLTPLEACAHSFF 314

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 86/200 (43%), Gaps = 19/200 (9%)
Query: 175 ISRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP 234
           +S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK  
Sbjct: 5   LSKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK-- 56
Query: 235 HANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------ 287
                K + + EL+++ +    N +      +  G+  D   L  V    PE +      
Sbjct: 57  KVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARH 116
Query: 288 ----KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM 343
               K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A 
Sbjct: 117 YSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK 176
Query: 344 VGFDGSFNQATLPGTKYVPP 363
               G  N + +    Y  P
Sbjct: 177 QLVRGEPNVSYICSRYYRAP 196

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 190 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 249
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 250 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 295
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 296 PTARLTPLEACAHSFF 311

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 13  SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 64
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 65  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 124
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 125 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 184
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 185 LVRGEPNVSXICSRYYRAP 203

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 197 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 256
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 257 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 302
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 303 PTARLTPLEACAHSFF 318

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 35  SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 86
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 87  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 146
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 147 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 206
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 207 LVRGEPNVSXICSRYYRAP 225

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 219 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 278
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 279 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 324
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 325 PTARLTPLEACAHSFF 340

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 19/141 (13%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDL 612
           T+ +RAPEV+    H    +DIWS G  +  ++ G+T F G D    +  I K+ G    
Sbjct: 186 TRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGT 245
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS---LFDLVDKCL 669
             V KL+++         AAKS    +LP+     T R DF ++ P +     DL++K L
Sbjct: 246 EFVQKLNDK---------AAKSYIQ-SLPQ-----TPRKDFTQLFPRASPQAADLLEKML 290
Query: 670 TVNPRLRISAEDALKHEFFAP 690
            ++   R++A  AL H FF P
Sbjct: 291 ELDVDKRLTAAQALTHPFFEP 311

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 13  SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 64
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 65  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 124
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 125 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 184
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 185 LVRGEPNVSXICSRYYRAP 203

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 197 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 256
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 257 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 302
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 303 PTARLTPLEACAHSFF 318

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 1   SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 52
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 53  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 112
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 113 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 172
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 173 LVRGEPNVSXICSRYYRAP 191

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 185 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 244
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 245 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 290
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 291 PTARLTPLEACAHSFF 306

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 1   SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 52
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 53  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 112
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 113 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 172
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 173 LVRGEPNVSXICSRYYRAP 191

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 185 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 244
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 245 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 290
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 291 PTARLTPLEACAHSFF 306

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 14  SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 65
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 66  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 125
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 126 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 185
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 186 LVRGEPNVSYICSRYYRAP 204

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 198 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 257
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 258 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 303
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 304 PTARLTPLEACAHSFF 319

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 37  SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 88
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 89  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 148
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 149 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 208
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 209 LVRGEPNVSYICSRYYRAP 227

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 221 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 280
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 281 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 326
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 327 PTARLTPLEACAHSFF 342

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 35  SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 86
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 87  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 146
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 147 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 206
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 207 LVRGEPNVSYICSRYYRAP 225

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 219 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 278
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 279 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 324
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 325 PTARLTPLEACAHSFF 340

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 5   SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 56
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 57  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 116
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 117 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 176
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 177 LVRGEPNVSXICSRYYRAP 195

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 189 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 248
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 249 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 294
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 295 PTARLTPLEACAHSFF 310

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 29  SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 80
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 81  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 140
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 141 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 200
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 201 LVRGEPNVSYICSRYYRAP 219

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 213 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 272
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 273 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 318
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 319 PTARLTPLEACAHSFF 334

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 19/178 (10%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 39  SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 90
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 91  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 150
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A
Sbjct: 151 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSA 208

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 223 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 282
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 283 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 328
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 329 PTARLTPLEACAHSFF 344

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 19/178 (10%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 80  SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 131
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 132 VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 191
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A
Sbjct: 192 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSA 249

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 264 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 323
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 324 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 369
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 370 PTARLTPLEACAHSFF 385

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 1   SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 52
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 53  VLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 112
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 113 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 172
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 173 LVRGEPNVSYICSRYYRAP 191

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 185 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 244
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 245 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 290
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 291 PTARLTPLEACAHSFF 306

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGS--E 610
           T  +RAP+VL  S+     +DIWS G  L  ++ G+  F G + E+ +K I  + G+  E
Sbjct: 171 TLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNE 230
Query: 611 DLW-EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
            LW  V KL       P+     +  PP +L +  +  TK P     +  +L D +   L
Sbjct: 231 SLWPSVTKL-------PKYNPNIQQRPPRDLRQVLQPHTKEP-----LDGNLMDFLHGLL 278
Query: 670 TVNPRLRISAEDALKHEFFA 689
            +NP +R+SA+ AL H +FA
Sbjct: 279 QLNPDMRLSAKQALHHPWFA 298

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 1   SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 52
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 53  VLQGKAFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 112
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 113 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 172
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 173 LVRGEPNVSYICSRYYRAP 191

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 185 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 244
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F        + P I    W K+   R       P     L  + L   
Sbjct: 245 EQIREMNPNYTEF--------AFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 290
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 291 PTARLTPLEACAHSFF 306

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 20/159 (12%)
Query: 197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLER 252
           L + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+ 
Sbjct: 3   LVDMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 62
Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLF 304
               N I+K        +    V E +  D    LKK +D S L        + Y + L 
Sbjct: 63  LNHPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLL 117
Query: 305 RALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           + LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 118 QGLAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 154

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 170 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 228
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 229 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 270
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 271 MLHYDPNKRISAKAALAHPFF 291

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 1   SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 52
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-DCFVLEHVKHDRPEVL------- 287
               K + + EL+++ +    N +      +  G+  D   L  V    PE +       
Sbjct: 53  VLQGKAFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHY 112
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 113 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 172
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 173 LVRGEPNVSYICSRYYRAP 191

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 185 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 244
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F          P I    W K+   R       P     L  + L   
Sbjct: 245 EQIREMNPNYTEF--------KFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 290
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 291 PTARLTPLEACAHSFF 306

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 41/177 (23%)
Query: 515 DLSDLQILLLTKLHPVPV-LIIFYLLLG-NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPK 572
           DL    +LL +KL    V L  F L +   G+Q+     AGT G+ +PEVL R    G  
Sbjct: 146 DLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVL-RKDPYGKP 204
Query: 573 LDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAA 632
           +D+W+ GV L  L++G  PF+ + +  +    K  G+ D             FP      
Sbjct: 205 VDLWACGVILYILLVGYPPFWDEDQHRLYQQIK-AGAYD-------------FPS----- 245
Query: 633 KSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFA 689
                   PEW           + +     DL++K LT+NP  RI+A +ALKH + +
Sbjct: 246 --------PEW-----------DTVTPEAKDLINKMLTINPSKRITAAEALKHPWIS 283

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 198 PNF-ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLER 252
           P F E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+ 
Sbjct: 6   PEFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 65
Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLF 304
               N I+K        +    V E +  D    LKK +D S L        + Y + L 
Sbjct: 66  LNHPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLL 120
Query: 305 RALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           + LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 121 QGLAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 157

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 27/142 (19%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSED- 611
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 173 TLWYRAPEILLGXKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDE 232
Query: 612 -LWE-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD---LVD 666
            +W  V  + + + SF               P+W      R DF +V+P    D   L+ 
Sbjct: 233 VVWPGVTSMPDYKPSF---------------PKWA-----RQDFSKVVPPLDEDGRSLLS 272
Query: 667 KCLTVNPRLRISAEDALKHEFF 688
           + L  +P  RISA+ AL H FF
Sbjct: 273 QMLHYDPNKRISAKAALAHPFF 294

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 20/159 (12%)
Query: 197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLER 252
           L + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+ 
Sbjct: 2   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLF 304
               N I+K        +    V E +  D    LKK +D S L        + Y + L 
Sbjct: 62  LNHPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLL 116
Query: 305 RALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           + LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 117 QGLAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 153

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 27/142 (19%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSED- 611
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 169 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDE 228
Query: 612 -LWE-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD---LVD 666
            +W  V  + + + SF               P+W      R DF +V+P    D   L+ 
Sbjct: 229 VVWPGVTSMPDYKPSF---------------PKWA-----RQDFSKVVPPLDEDGRSLLS 268
Query: 667 KCLTVNPRLRISAEDALKHEFF 688
           + L  +P  RISA+ AL H FF
Sbjct: 269 QMLHYDPNKRISAKAALAHPFF 290

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 20/159 (12%)
Query: 197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLER 252
           L + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+ 
Sbjct: 3   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 62
Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLF 304
               N I+K        +    V E +  D    LKK +D S L        + Y + L 
Sbjct: 63  LNHPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLL 117
Query: 305 RALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           + LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 118 QGLAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 154

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 170 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 228
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 229 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 270
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 271 MLHYDPNKRISAKAALAHPFF 291

>pdb|3U87|A Chain A, Structure Of A Chimeric Construct Of Human Ck2alpha And Human Ck2alpha' In Complex With A Non-hydrolysable Atp-analogue Length = 349

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 192 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 251
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 252 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 305
Query: 670 TVNPRLRISAEDALKHEFFAPC 691
             + + R++A +A++H +F P 
Sbjct: 306 RYDHQSRLTAREAMEHPYFYPV 327

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 198 PNF-ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLER 252
           P F E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+ 
Sbjct: 6   PEFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 65
Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLF 304
               N I+K        +    V E +  D    LKK +D S L        + Y + L 
Sbjct: 66  LNHPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLL 120
Query: 305 RALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           + LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 121 QGLAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 157

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 27/142 (19%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSED- 611
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 173 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDE 232
Query: 612 -LWE-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD---LVD 666
            +W  V  + + + SF               P+W      R DF +V+P    D   L+ 
Sbjct: 233 VVWPGVTSMPDYKPSF---------------PKWA-----RQDFSKVVPPLDEDGRSLLS 272
Query: 667 KCLTVNPRLRISAEDALKHEFF 688
           + L  +P  RISA+ AL H FF
Sbjct: 273 QMLHYDPNKRISAKAALAHPFF 294

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++  + H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNAMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFANV---------FIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+     
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRALA 308
           N I+K        +    V E +  D    LKK +D S L        + Y + L + LA
Sbjct: 63  N-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQGLA 117
Query: 309 SLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 118 FCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 150

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 166 TLWYRAPEILLGXKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 224
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 225 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 266
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 267 MLHYDPNKRISAKAALAHPFF 287

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V E +  D    LKK +D S L        + Y + L + 
Sbjct: 63  HPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQG 117
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 118 LAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 152

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 27/142 (19%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSED- 611
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 168 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDE 227
Query: 612 -LWE-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD---LVD 666
            +W  V  + + + SF               P+W      R DF +V+P    D   L+ 
Sbjct: 228 VVWPGVTSMPDYKPSF---------------PKWA-----RQDFSKVVPPLDEDGRSLLS 267
Query: 667 KCLTVNPRLRISAEDALKHEFF 688
           + L  +P  RISA+ AL H FF
Sbjct: 268 QMLHYDPNKRISAKAALAHPFF 289

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 39/147 (26%)
Query: 543 GKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKD 602
           G+Q+     AGT G+ +PEVL R    G  +D+W+ GV L  L++G  PF+ + +  +  
Sbjct: 165 GEQQAWFGFAGTPGYLSPEVL-RKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQ 223
Query: 603 IAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF 662
             K  G+ D             FP              PEW           + +     
Sbjct: 224 QIK-AGAYD-------------FPS-------------PEW-----------DTVTPEAK 245
Query: 663 DLVDKCLTVNPRLRISAEDALKHEFFA 689
           DL++K LT+NP  RI+A +ALKH + +
Sbjct: 246 DLINKMLTINPSKRITAAEALKHPWIS 272

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V E +  D    LKK +D S L        + Y + L + 
Sbjct: 63  HPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQG 117
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 118 LAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 152

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 27/142 (19%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSED- 611
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 168 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDE 227
Query: 612 -LWE-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD---LVD 666
            +W  V  + + + SF               P+W      R DF +V+P    D   L+ 
Sbjct: 228 VVWPGVTSMPDYKPSF---------------PKWA-----RQDFSKVVPPLDEDGRSLLS 267
Query: 667 KCLTVNPRLRISAEDALKHEFF 688
           + L  +P  RISA+ AL H FF
Sbjct: 268 QMLHYDPNKRISAKAALAHPFF 289

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 1   SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 52
Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD-----CFVLEHVKHDRPEVL--- 287
               K + + EL+++ +    N +      +  G+         VL++V      V    
Sbjct: 53  VLQGKAFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPATVYRVARHY 112
Query: 288 ---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
              K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L         L DF  A  
Sbjct: 113 SRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQ 172
Query: 345 GFDGSFNQATLPGTKYVPP 363
              G  N + +    Y  P
Sbjct: 173 LVRGEPNVSXICSRYYRAP 191

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGSEDL 612
           ++ +RAPE++F +      +D+WSAG  L  L++G+  F GD     + +I K+ G+   
Sbjct: 185 SRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR 244
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++   + F        + P I    W K+   R       P     L  + L   
Sbjct: 245 EQIREMNPNYTEF--------AFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYT 290
Query: 673 PRLRISAEDALKHEFF 688
           P  R++  +A  H FF
Sbjct: 291 PTARLTPLEACAHSFF 306

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V E +  D    LKK +D S L        + Y + L + 
Sbjct: 61  HPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQG 115
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 116 LAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 150

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 224
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 225 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 266
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 267 MLHYDPNKRISAKAALAHPFF 287

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 75/159 (47%), Gaps = 20/159 (12%)
Query: 197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLER 252
           L + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+ 
Sbjct: 2   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLF 304
               N I+K        +    V E +  D    LKK +D S L        + Y + L 
Sbjct: 62  LNHPN-IVKLLDVIHTENKLYLVFEFLSMD----LKKFMDASALTGIPLPLIKSYLFQLL 116
Query: 305 RALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           + LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 117 QGLAFCHSHRVLHRDLKPENLLINTEGAIK--LADFGLA 153

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 27/142 (19%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSED- 611
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 169 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDE 228
Query: 612 -LWE-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD---LVD 666
            +W  V  + + + SF               P+W      R DF +V+P    D   L+ 
Sbjct: 229 VVWPGVTSMPDYKPSF---------------PKWA-----RQDFSKVVPPLDEDGRSLLS 268
Query: 667 KCLTVNPRLRISAEDALKHEFF 688
           + L  +P  RISA+ AL H FF
Sbjct: 269 QMLHYDPNKRISAKAALAHPFF 290

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V E +  D    LKK +D S L        + Y + L + 
Sbjct: 61  HPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQG 115
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 116 LAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 150

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 224
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 225 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 266
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 267 MLHYDPNKRISAKAALAHPFF 287

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V E +  D    LKK +D S L        + Y + L + 
Sbjct: 64  HPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQG 118
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 119 LAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 153

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 169 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 227
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 228 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 269
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 270 MLHYDPNKRISAKAALAHPFF 290

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V E +  D    LKK +D S L        + Y + L + 
Sbjct: 61  HPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQG 115
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 116 LAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 150

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 224
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 225 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 266
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 267 MLHYDPNKRISAKAALAHPFF 287

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 2   HMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V E +  D    LKK +D S L        + Y + L + 
Sbjct: 62  HPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQG 116
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 117 LAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 151

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 167 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 225
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 226 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 267
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 268 MLHYDPNKRISAKAALAHPFF 288

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 60/141 (42%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 208 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 267
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  +  R           +SLP      W KL  K         S   DL+D+
Sbjct: 268 SQEDLNCIINMKARNY--------LQSLPSKTKVAWAKLFPKS-------DSKALDLLDR 312
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI+ E+AL H + 
Sbjct: 313 MLTFNPNKRITVEEALAHPYL 333

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLER 252
           L + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+ 
Sbjct: 2   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALA 308
               N I+K        +    V E +  D  + +       I L  ++ Y + L + LA
Sbjct: 62  LNHPN-IVKLLDVIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQLLQGLA 120
Query: 309 SLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 121 FCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 153

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 27/142 (19%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSED- 611
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 169 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDE 228
Query: 612 -LWE-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD---LVD 666
            +W  V  + + + SF               P+W      R DF +V+P    D   L+ 
Sbjct: 229 VVWPGVTSMPDYKPSF---------------PKWA-----RQDFSKVVPPLDEDGRSLLS 268
Query: 667 KCLTVNPRLRISAEDALKHEFF 688
           + L  +P  RISA+ AL H FF
Sbjct: 269 QMLHYDPNKRISAKAALAHPFF 290

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 3   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V E +  D    LKK +D S L        + Y + L + 
Sbjct: 63  HPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQG 117
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 118 LAFCHSHRVLHRDLKPENLLINTEGAIK--LADFGLA 152

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 27/142 (19%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSED- 611
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 168 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDE 227
Query: 612 -LWE-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD---LVD 666
            +W  V  + + + SF               P+W      R DF +V+P    D   L+ 
Sbjct: 228 VVWPGVTSMPDYKPSF---------------PKWA-----RQDFSKVVPPLDEDGRSLLS 267
Query: 667 KCLTVNPRLRISAEDALKHEFF 688
           + L  +P  RISA+ AL H FF
Sbjct: 268 QMLHYDPNKRISAKAALAHPFF 289

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V E +  D    LKK +D S L        + Y + L + 
Sbjct: 62  HPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQG 116
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 117 LAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 151

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 167 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 225
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 226 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 267
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 268 MLHYDPNKRISAKAALAHPFF 288

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V E +  D    LKK +D S L        + Y + L + 
Sbjct: 62  HPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQG 116
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 117 LAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 151

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 167 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 225
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 226 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 267
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 268 MLHYDPNKRISAKAALAHPFF 288

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+     
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRALA 308
           N I+K        +    V E +  D    LKK +D S L        + Y + L + LA
Sbjct: 63  N-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQGLA 117
Query: 309 SLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 118 FCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 150

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 224
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 225 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 266
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 267 MLHYDPNKRISAKAALAHPFF 287

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+     
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRALA 308
           N I+K        +    V E +  D    LKK +D S L        + Y + L + LA
Sbjct: 62  N-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQGLA 116
Query: 309 SLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 117 FCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 149

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 223
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 224 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 265
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 266 MLHYDPNKRISAKAALAHPFF 286

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+     
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRALA 308
           N I+K        +    V E +  D    LKK +D S L        + Y + L + LA
Sbjct: 62  N-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQGLA 116
Query: 309 SLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 117 FCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 149

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 223
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 224 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 265
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 266 MLHYDPNKRISAKAALAHPFF 286

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+     
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRALA 308
           N I+K        +    V E +  D    LKK +D S L        + Y + L + LA
Sbjct: 62  N-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQGLA 116
Query: 309 SLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 117 FCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 149

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 223
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 224 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 265
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 266 MLHYDPNKRISAKAALAHPFF 286

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V E +  D    LKK +D S L        + Y + L + 
Sbjct: 62  HPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQG 116
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 117 LAFCHSHRVLHRDLKPENLLINTEGAIK--LADFGLA 151

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 167 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 225
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 226 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 267
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 268 MLHYDPNKRISAKAALAHPFF 288

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLER 252
           L + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+ 
Sbjct: 1   LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 60
Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALA 308
               N I+K        +    V E +  D  + +       I L  ++ Y + L + LA
Sbjct: 61  LNHPN-IVKLLDVIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQLLQGLA 119
Query: 309 SLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 120 FCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 152

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 168 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 226
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 227 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 268
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 269 MLHYDPNKRISAKAALAHPFF 289

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+     
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRALA 308
           N I+K        +    V E +  D    LKK +D S L        + Y + L + LA
Sbjct: 62  N-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQGLA 116
Query: 309 SLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 117 FCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 149

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 223
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 224 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 265
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 266 MLHYDPNKRISAKAALAHPFF 286

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V E +  D    LKK +D S L        + Y + L + 
Sbjct: 61  HPN-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQG 115
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 116 LAFCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 150

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 224
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 225 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 266
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 267 MLHYDPNKRISAKAALAHPFF 287

>pdb|3OFM|A Chain A, Structure Of A Human Ck2alpha Prime, The Paralog Isoform Of The Catalytic Subunit Of Protein Kinase Ck2 From Homo Sapiens Length = 350

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG--DPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  R PFF   D    +  IAK+ G+
Sbjct: 193 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRREPFFHGQDNYDQLVRIAKVLGT 252
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           E+L+   K ++ +     D +    L   +   W   I      L V P +L DL+DK L
Sbjct: 253 EELYGYLKKYHIDL----DPHFNDILGQHSRKRWENFIHSENRHL-VSPEAL-DLLDKLL 306
Query: 670 TVNPRLRISAEDALKHEFFAPC 691
             + + R++A++A++H +F P 
Sbjct: 307 RYDHQQRLTAKEAMEHPYFYPV 328

>pdb|3E3B|X Chain X, Crystal Structure Of Catalytic Subunit Of Human Protein Kinase Ck2alpha Prime With A Potent Indazole-Derivative Inhibitor Length = 339

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG--DPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  R PFF   D    +  IAK+ G+
Sbjct: 198 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRREPFFHGQDNYDQLVRIAKVLGT 257
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           E+L+   K ++ +     D +    L   +   W   I      L V P +L DL+DK L
Sbjct: 258 EELYGYLKKYHIDL----DPHFNDILGQHSRKRWENFIHSENRHL-VSPEAL-DLLDKLL 311
Query: 670 TVNPRLRISAEDALKHEFFAPC 691
             + + R++A++A++H +F P 
Sbjct: 312 RYDHQQRLTAKEAMEHPYFYPV 333

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+     
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRALA 308
           N I+K        +    V E +  D    LKK +D S L        + Y + L + LA
Sbjct: 63  N-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQGLA 117
Query: 309 SLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 118 FCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 150

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 224
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 225 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 266
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 267 MLHYDPNKRISAKAALAHPFF 287

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 2   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRA 306
             N I+K        +    V E +  D    LKK +D S L        + Y + L + 
Sbjct: 62  HPN-IVKLLDVIHTENKLYLVFEFLSMD----LKKFMDASALTGIPLPLIKSYLFQLLQG 116
Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           LA  H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 117 LAFCHSHRVLHRDLKPENLLINTEGAIK--LADFGLA 151

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 167 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 225
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 226 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 267
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 268 MLHYDPNKRISAKAALAHPFF 288

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 1   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASL 310
             N I+K        +    V E +  D  + +       I L  ++ Y + L + LA  
Sbjct: 61  HPN-IVKLLDVIHTENKLYLVFEFLHQDLKDFMDASALTGIPLPLIKSYLFQLLQGLAFC 119
Query: 311 HKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 120 HSHRVLHRDLKPENLLINTEGAIK--LADFGLA 150

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 224
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 225 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 266
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 267 MLHYDPNKRISAKAALAHPFF 287

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 194 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 253
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 254 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 301
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 302 LDSDKRITAAQALAHAYFAQYHD 324

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 203 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 262
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 263 GA-ELLKKISSESA-RNYIQSLAQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 310
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 311 LDSDKRITAAQALAHAYFAQYHD 333

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 195 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 254
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 255 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 302
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 303 LDSDKRITAAQALAHAYFAQYHD 325

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 190 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 249
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 250 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 297
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 298 LDSDKRITAAQALAHAYFAQYHD 320

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 195 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 254
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 255 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 302
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 303 LDSDKRITAAQALAHAYFAQYHD 325

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 181 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 240
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 241 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 288
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 289 LDSDKRITAAQALAHAYFAQYHD 311

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 195 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 254
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 255 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 302
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 303 LDSDKRITAAQALAHAYFAQYHD 325

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 194 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 253
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 254 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 301
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 302 LDSDKRITAAQALAHAYFAQYHD 324

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 39/147 (26%)
Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIK 601
            G Q+     AGT G+ +PEVL R    G  +D+W+ GV L  L++G  PF+ + +  + 
Sbjct: 157 QGDQQAWFGFAGTPGYLSPEVL-RKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLY 215
Query: 602 DIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL 661
              K  G+ D             FP              PEW           + +    
Sbjct: 216 QQIK-AGAYD-------------FPS-------------PEW-----------DTVTPEA 237
Query: 662 FDLVDKCLTVNPRLRISAEDALKHEFF 688
            DL++K LT+NP  RI+A +ALKH + 
Sbjct: 238 KDLINKMLTINPAKRITASEALKHPWI 264

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 190 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 249
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 250 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 297
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 298 LDSDKRITAAQALAHAYFAQYHD 320

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 179 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 238
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 239 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 286
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 287 LDSDKRITAAQALAHAYFAQYHD 309

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 203 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 262
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 263 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 310
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 311 LDSDKRITAAQALAHAYFAQYHD 333

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 39/147 (26%)
Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIK 601
            G Q+     AGT G+ +PEVL R    G  +D+W+ GV L  L++G  PF+ + +  + 
Sbjct: 157 QGDQQAWFGFAGTPGYLSPEVL-RKDPYGKPVDMWACGVILYILLVGYPPFWDEDQHRLY 215
Query: 602 DIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL 661
              K  G+ D             FP              PEW           + +    
Sbjct: 216 QQIK-AGAYD-------------FPS-------------PEW-----------DTVTPEA 237
Query: 662 FDLVDKCLTVNPRLRISAEDALKHEFF 688
            DL++K LT+NP  RI+A +ALKH + 
Sbjct: 238 KDLINKMLTINPAKRITASEALKHPWI 264

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 189 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 248
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 249 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 296
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 297 LDSDKRITAAQALAHAYFAQYHD 319

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 180 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 239
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 240 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 287
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 288 LDSDKRITAAQALAHAYFAQYHD 310

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 202 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 261
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 262 GA-ELLKKISSESA-RNYIQSLAQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 309
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 310 LDSDKRITAAQALAHAYFAQYHD 332

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 206 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 265
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 266 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 313
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 314 LDSDKRITAAQALAHAYFAQYHD 336

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 202 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 261
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 262 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 309
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 310 LDSDKRITAAQALAHAYFAQYHD 332

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 190 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 249
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 250 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 297
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 298 LDSDKRITAAQALAHAYFAQYHD 320

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 206 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 265
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 266 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 313
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 314 LDSDKRITAAQALAHAYFAQYHD 336

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 188 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 247
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 248 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 295
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 296 LDSDKRITAAQALAHAYFAQYHD 318

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 185 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 244
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 245 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 292
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 293 LDSDKRITAAQALAHAYFAQYHD 315

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 185 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 244
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 245 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 292
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 293 LDSDKRITAAQALAHAYFAQYHD 315

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 189 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 248
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 249 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 296
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 297 LDSDKRITAAQALAHAYFAQYHD 319

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 179 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 238
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 239 GA-ELLKKISSESA-RNYIQSLAQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 286
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 287 LDSDKRITAAQALAHAYFAQYHD 309

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLAQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 60/146 (41%), Gaps = 19/146 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 190 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 249
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 250 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNAD-------SKALDLLDK 294
Query: 668 CLTVNPRLRISAEDALKHEFFAPCHE 693
            LT NP  RI  E AL H + A  ++
Sbjct: 295 MLTFNPHKRIEVEQALAHPYLAQYYD 320

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 179 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 238
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 239 GA-ELLKKISSESA-RNYIQSLAQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 286
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 287 LDSDKRITAAQALAHAYFAQYHD 309

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 203 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 262
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 263 GA-ELLKKISSESA-RNYIQSLAQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 310
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 311 LDSDKRITAAQALAHAYFAQYHD 333

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 180 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 239
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 240 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 287
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 288 LDSDKRITAAQALAHAYFAQYHD 310

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 185 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 244
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 245 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 292
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 293 LDSDKRITAAQALAHAYFAQYHD 315

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 179 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 238
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 239 GA-ELLKKISSESA-RNYIQSLAQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 286
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 287 LDSDKRITAAQALAHAYFAQYHD 309

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 188 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 247
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 248 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 295
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 296 LDSDKRITAAQALAHAYFAQYHD 318

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 185 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 244
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 245 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 292
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 293 LDSDKRITAAQALAHAYFAQYHD 315

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 190 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 249
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 250 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 297
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 298 LDSDKRITAAQALAHAYFAQYHD 320

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 188 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 247
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 248 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 295
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 296 LDSDKRITAAQALAHAYFAQYHD 318

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLAQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 189 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 248
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 249 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 296
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 297 LDSDKRITAAQALAHAYFAQYHD 319

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 193 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 252
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 253 GA-ELLKKISSESA-RNYIQSLAQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 300
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 301 LDSDKRITAAQALAHAYFAQYHD 323

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 182 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 241
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 242 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 289
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 290 LDSDKRITAAQALAHAYFAQYHD 312

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 189 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 248
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 249 GA-ELLKKISSESA-RNYIQSLAQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 296
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 297 LDSDKRITAAQALAHAYFAQYHD 319

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 188 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 247
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 248 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 295
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 296 LDSDKRITAAQALAHAYFAQYHD 318

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+ 
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP 242
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              E+ K  + ES+    + +   +P +N             F+   P ++ DL++K L 
Sbjct: 243 GA-ELLKKISSESA-RNYIQSLTQMPKMNFAN---------VFIGANPLAV-DLLEKMLV 290
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A  AL H +FA  H+
Sbjct: 291 LDSDKRITAAQALAHAYFAQYHD 313

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 12/153 (7%)
Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFG 254
           + E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+   
Sbjct: 4   SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASL 310
             N I+K        +    V E +  D    +       I L  ++ Y + L + LA  
Sbjct: 64  HPN-IVKLLDVIHTENKLYLVFEFLHQDLKTFMDASALTGIPLPLIKSYLFQLLQGLAFC 122
Query: 311 HKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 123 HSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 153

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 169 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 227
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 228 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 269
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 270 MLHYDPNKRISAKAALAHPFF 290

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 39/146 (26%)
Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIK 601
            G Q+     AGT G+ +PEVL R +  G  +DIW+ GV L  L++G  PF+ + +  + 
Sbjct: 157 QGDQQAWFGFAGTPGYLSPEVL-RKEAYGKPVDIWACGVILYILLVGYPPFWDEDQHKLY 215
Query: 602 DIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL 661
              K  G+ D             FP              PEW           + +    
Sbjct: 216 QQIK-AGAYD-------------FPS-------------PEW-----------DTVTPEA 237
Query: 662 FDLVDKCLTVNPRLRISAEDALKHEF 687
            +L+++ LT+NP  RI+A +ALKH +
Sbjct: 238 KNLINQMLTINPAKRITAHEALKHPW 263

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 13/143 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
             T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    ++ I +L G+ 
Sbjct: 212 VATRWYRAPEIMLNWMHYNMTVDIWSVGCIMAELLTGRTLFPGTDHINQLQQIMRLTGTP 271
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
               ++++ + E+          SLP +    +  +      F+   P ++ DL++K L 
Sbjct: 272 PASVISRMPSHEAR-----NYINSLPQMPKRNFADV------FIGANPLAV-DLLEKMLV 319
Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           ++   RI+A +AL H +F+  H+
Sbjct: 320 LDTDKRITASEALAHPYFSQYHD 342

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+     
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRALA 308
           N I+K        +    V E +  D    LKK +D S L        + Y + L + L+
Sbjct: 63  N-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQGLS 117
Query: 309 SLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 118 FCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 150

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 224
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 225 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 266
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 267 MLHYDPNKRISAKAALAHPFF 287

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 28/161 (17%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-CPHA-----NASKHYVSNELRMLERFG 254
           + + + E  G+G YG V  ARR+  G  VAIK  P+A     NA +     EL++L+ F 
Sbjct: 54  DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKR--TLRELKILKHFK 111
Query: 255 GKNFI---------IKYEGCFKCGDSDCFVLEHVKHDRPEVL--KKEIDLSQLQWYGYCL 303
             N I         + Y G FK   S   VL+ ++ D  +++   + + L  ++++ Y L
Sbjct: 112 HDNIIAIKDILRPTVPY-GEFK---SVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQL 167
Query: 304 FRALASLHKQGIVHRDVKPGNFLF--SCKAVKGYLIDFNLA 342
            R L  +H   ++HRD+KP N L   +C+   G   DF +A
Sbjct: 168 LRGLKYMHSAQVIHRDLKPSNLLVNENCELKIG---DFGMA 205

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 28/161 (17%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-CPHA-----NASKHYVSNELRMLERFG 254
           + + + E  G+G YG V  ARR+  G  VAIK  P+A     NA +     EL++L+ F 
Sbjct: 55  DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKR--TLRELKILKHFK 112
Query: 255 GKNFI---------IKYEGCFKCGDSDCFVLEHVKHDRPEVL--KKEIDLSQLQWYGYCL 303
             N I         + Y G FK   S   VL+ ++ D  +++   + + L  ++++ Y L
Sbjct: 113 HDNIIAIKDILRPTVPY-GEFK---SVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQL 168
Query: 304 FRALASLHKQGIVHRDVKPGNFLF--SCKAVKGYLIDFNLA 342
            R L  +H   ++HRD+KP N L   +C+   G   DF +A
Sbjct: 169 LRGLKYMHSAQVIHRDLKPSNLLVNENCELKIG---DFGMA 206

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 188 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 247
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 248 SQEDLNXIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 292
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 293 MLTFNPHKRIEVEQALAHPYL 313

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 188 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 247
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 248 SQEDLNXIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 292
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 293 MLTFNPHKRIEVEQALAHPYL 313

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIK----CPHANASKHYVSNELRMLERFGGKNFIIKYEGC 265
           G G YG V + R K+ G +VAIK           K     E+++L++   +N +   E C
Sbjct: 34  GEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVC 93
Query: 266 FKCGDSDCFVLEHVKH---DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKP 322
            K       V E V H   D  E+    +D   +Q Y + +   +   H   I+HRD+KP
Sbjct: 94  -KKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKP 152
Query: 323 GNFLFSCKAVKGYLIDFNLA 342
            N L S   V   L DF  A
Sbjct: 153 ENILVSQSGVVK-LCDFGFA 171

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSE 610
             T+ +RAPE+L      G  +D+W+ G  +  + +G   F GD +   +  I    G+ 
Sbjct: 185 VATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNL 244
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
            +    +L N+   F     A   LP I   E   L  + P   EV+     DL  KCL 
Sbjct: 245 -IPRHQELFNKNPVF-----AGVRLPEIKERE--PLERRYPKLSEVV----IDLAKKCLH 292
Query: 671 VNPRLRISAEDALKHEFF 688
           ++P  R    + L H+FF
Sbjct: 293 IDPDKRPFCAELLHHDFF 310

>pdb|1NA7|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 Length = 329

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 210 GSGGYGTVYRARR--KNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFK 267
           G G Y  V+ A     N+  VV I  P     K+ +  E+++LE   G   II      K
Sbjct: 46  GRGKYSEVFEAINITNNEKVVVKILKP---VKKNKIKREIKILENLRGGPNIITLADIVK 102
Query: 268 --CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNF 325
                +   V EHV +   + L + +    +++Y Y + +AL   H  GI+HRDVKP N 
Sbjct: 103 DPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNV 162
Query: 326 LFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLV 376
           +   +  K  LID+ LA         +   PG +Y   V  R     + LV
Sbjct: 163 MIDHEHRKLRLIDWGLA---------EFYHPGQEYNVRVASRYFKGPELLV 204

>pdb|1NA7|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 Length = 329

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 192 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 251
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 252 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 305
Query: 670 TVNPRLRISAEDALKHEFF 688
             + + R++A +A++H +F
Sbjct: 306 RYDHQSRLTAREAMEHPYF 324

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDL 612
           T+ +RAPEV+         +DIWS G  +  ++ G+T F G D    +K+I K+ G+   
Sbjct: 188 TRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPA 247
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
             V +L + E+         K LP +   ++  ++T         P ++ +L++K L ++
Sbjct: 248 EFVQRLQSDEAK-----NYMKGLPELEKKDFASILTNAS------PLAV-NLLEKMLVLD 295
Query: 673 PRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNT 710
              R++A +AL H +F   H+   + ++ +   S D+ 
Sbjct: 296 AEQRVTAGEALAHPYFESLHDTEDEPQVQKYDDSFDDV 333

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 9/148 (6%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
             T+ +RAPE+L  S      +D+WS G  L  ++ G+  F G    N   + ++ G  D
Sbjct: 191 VATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMN--QLERIIGVID 248
Query: 612 LWEVAKLHNRESSFPEDLYAA-KSLPPINLPEWCKLITKRPDFL-EVIPSS-----LFDL 664
                 + + +S F + +  + K    I       + TK  + L ++ P +       DL
Sbjct: 249 FPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDL 308
Query: 665 VDKCLTVNPRLRISAEDALKHEFFAPCH 692
           +DK L  NP  RISA DALKH F +  H
Sbjct: 309 LDKLLQFNPNKRISANDALKHPFVSIFH 336

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E+F   E+ G G YG VY+AR K  G VVA+     +     V +    E+ +L+     
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRALA 308
           N I+K        +    V E +  D    LKK +D S L        + Y + L + LA
Sbjct: 63  N-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQGLA 117
Query: 309 SLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 118 FCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 150

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 166 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 224
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 225 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 266
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 267 MLHYDPNKRISAKAALAHPFF 287

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E+F   E+ G G YG VY+AR K  G VVA+     +     V +    E+ +L+     
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQL--------QWYGYCLFRALA 308
           N I+K        +    V E +  D    LKK +D S L        + Y + L + LA
Sbjct: 62  N-IVKLLDVIHTENKLYLVFEFLHQD----LKKFMDASALTGIPLPLIKSYLFQLLQGLA 116
Query: 309 SLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             H   ++HRD+KP N L + + A+K  L DF LA
Sbjct: 117 FCHSHRVLHRDLKPQNLLINTEGAIK--LADFGLA 149

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 25/141 (17%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           T  +RAPE+L   ++    +DIWS G     ++  R  F GD E   +  I +  G+ D 
Sbjct: 165 TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPD- 223
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPI--NLPEWCKLITKRPDFLEVIPSSLFD---LVDK 667
                    E  +P       S+P    + P+W      R DF +V+P    D   L+ +
Sbjct: 224 ---------EVVWP----GVTSMPDYKPSFPKWA-----RQDFSKVVPPLDEDGRSLLSQ 265
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  +P  RISA+ AL H FF
Sbjct: 266 MLHYDPNKRISAKAALAHPFF 286

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 39/146 (26%)
Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIK 601
            G+Q+     AGT G+ +PEVL R    G  +DIW+ GV L  L++G  PF+ + +  + 
Sbjct: 184 QGEQQAWFGFAGTPGYLSPEVL-RKDPYGKPVDIWACGVILYILLVGYPPFWDEDQHKLY 242
Query: 602 DIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL 661
              K  G+ D             FP              PEW           + +    
Sbjct: 243 QQIK-AGAYD-------------FPS-------------PEW-----------DTVTPEA 264
Query: 662 FDLVDKCLTVNPRLRISAEDALKHEF 687
            +L+++ LT+NP  RI+A+ ALKH +
Sbjct: 265 KNLINQMLTINPAKRITADQALKHPW 290

>pdb|1JWH|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 337

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 13/157 (8%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 192 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 251
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 252 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 305
Query: 670 TVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSS 706
             + + R++A +A++H +F   + +++ Q   R GSS
Sbjct: 306 RYDHQSRLTAREAMEHPYF---YTVVKDQA--RMGSS 337

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGKNFI--- 259
           E+ G G YG VY+A+  + G +VA+K    +A    + +    E+ +L+     N +   
Sbjct: 27  EKVGEGTYGVVYKAK-DSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLI 85
Query: 260 --IKYEGCFKCGDSDCFVLEHVKHDRPEVL---KKEIDLSQLQWYGYCLFRALASLHKQG 314
             I  E C         V E ++ D  +VL   K  +  SQ++ Y Y L R +A  H+  
Sbjct: 86  DVIHSERCL------TLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHR 139
Query: 315 IVHRDVKPGNFLF-SCKAVKGYLIDFNLA 342
           I+HRD+KP N L  S  A+K  L DF LA
Sbjct: 140 ILHRDLKPQNLLINSDGALK--LADFGLA 166

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDL 612
           T  +RAP+VL  S+     +DIWS G     ++ G+  F G  + + +  I  + G+ + 
Sbjct: 182 TLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNP 241
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            E  ++       P  L+  ++        W  +I   P F +       DL+   L  +
Sbjct: 242 REWPQVQE----LP--LWKQRTFQVFEKKPWSSII---PGFCQ----EGIDLLSNMLCFD 288
Query: 673 PRLRISAEDALKHEFF 688
           P  RISA DA+ H +F
Sbjct: 289 PNKRISARDAMNHPYF 304

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGKNFI--- 259
           E+ G G YG VY+A+  + G +VA+K    +A    + +    E+ +L+     N +   
Sbjct: 27  EKVGEGTYGVVYKAK-DSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLI 85
Query: 260 --IKYEGCFKCGDSDCFVLEHVKHDRPEVL---KKEIDLSQLQWYGYCLFRALASLHKQG 314
             I  E C         V E ++ D  +VL   K  +  SQ++ Y Y L R +A  H+  
Sbjct: 86  DVIHSERCL------TLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHR 139
Query: 315 IVHRDVKPGNFLF-SCKAVKGYLIDFNLA 342
           I+HRD+KP N L  S  A+K  L DF LA
Sbjct: 140 ILHRDLKPQNLLINSDGALK--LADFGLA 166

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDL 612
           T  +RAP+VL  S+     +DIWS G     ++ G+  F G  + + +  I  + G+ + 
Sbjct: 182 TLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNP 241
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            E  ++       P  L+  ++        W  +I   P F +       DL+   L  +
Sbjct: 242 REWPQVQE----LP--LWKQRTFQVFEKKPWSSII---PGFCQ----EGIDLLSNMLCFD 288
Query: 673 PRLRISAEDALKHEFF 688
           P  RISA DA+ H +F
Sbjct: 289 PNKRISARDAMNHPYF 304

>pdb|3H30|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 With 5,6-Dichloro-1-Beta-D- Ribofuranosylbenzimidazole Length = 334

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 192 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 251
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 252 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 305
Query: 670 TVNPRLRISAEDALKHEFF 688
             + + R++A +A++H +F
Sbjct: 306 RYDHQSRLTAREAMEHPYF 324

>pdb|2R7I|A Chain A, Crystal Structure Of Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 192 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 251
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 252 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 305
Query: 670 TVNPRLRISAEDALKHEFF 688
             + + R++A +A++H +F
Sbjct: 306 RYDHQSRLTAREAMEHPYF 324

>pdb|3NGA|A Chain A, Human Ck2 Catalytic Domain In Complex With Cx-4945 Length = 333

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 192 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 251
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 252 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 305
Query: 670 TVNPRLRISAEDALKHEFF 688
             + + R++A +A++H +F
Sbjct: 306 RYDHQSRLTAREAMEHPYF 324

>pdb|4DGL|C Chain C, Crystal Structure Of The Ck2 Tetrameric Holoenzyme Length = 335

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 192 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 251
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 252 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 305
Query: 670 TVNPRLRISAEDALKHEFF 688
             + + R++A +A++H +F
Sbjct: 306 RYDHQSRLTAREAMEHPYF 324

>pdb|3Q9W|A Chain A, Crystal Structure Of Human Ck2 Alpha In Complex With Emodin At Ph 8.5 Length = 336

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 192 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 251
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 252 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 305
Query: 670 TVNPRLRISAEDALKHEFF 688
             + + R++A +A++H +F
Sbjct: 306 RYDHQSRLTAREAMEHPYF 324

>pdb|3MB6|A Chain A, Human Ck2 Catalytic Domain In Complex With A Difurane Derivative Inhibitor (Cpa) Length = 331

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 192 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 251
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 252 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 305
Query: 670 TVNPRLRISAEDALKHEFF 688
             + + R++A +A++H +F
Sbjct: 306 RYDHQSRLTAREAMEHPYF 324

>pdb|3JUH|A Chain A, Crystal Structure Of A Mutant Of Human Protein Kinase Ck2alpha With Altered Cosubstrate Specificity Length = 335

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 192 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 251
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 252 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 305
Query: 670 TVNPRLRISAEDALKHEFF 688
             + + R++A +A++H +F
Sbjct: 306 RYDHQSRLTAREAMEHPYF 324

>pdb|1PJK|A Chain A, Crystal Structure Of A C-terminal Deletion Mutant Of Human Protein Kinase Ck2 Catalytic Subunit Length = 334

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 191 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 250
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 251 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 304
Query: 670 TVNPRLRISAEDALKHEFF 688
             + + R++A +A++H +F
Sbjct: 305 RYDHQSRLTAREAMEHPYF 323

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVA---IKCPHANASKHYVSNELRMLERFGGK 256
            E++I  ++ G G Y TVY+ + K    +VA   I+  H   +      E+ +L+     
Sbjct: 1   METYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHA 60
Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQ 313
           N I+          S   V E++  D  + L      I++  ++ + + L R LA  H+Q
Sbjct: 61  N-IVTLHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQ 119
Query: 314 GIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
            ++HRD+KP N L + +  +  L DF LA
Sbjct: 120 KVLHRDLKPQNLLINERG-ELKLADFGLA 147

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 24/150 (16%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP-EQNIKDIAKLRGS--E 610
           T  +R P++L  S     ++D+W  G     +  GR  F G   E+ +  I ++ G+  E
Sbjct: 163 TLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTE 222
Query: 611 DLWEVAKLHNRE---SSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
           + W    L N E    ++P+  Y A++L           ++  P     + S   DL+ K
Sbjct: 223 ETWP-GILSNEEFKTYNYPK--YRAEAL-----------LSHAPR----LDSDGADLLTK 264
Query: 668 CLTVNPRLRISAEDALKHEFFAPCHEMLRK 697
            L    R RISAEDA+KH FF    E + K
Sbjct: 265 LLQFEGRNRISAEDAMKHPFFLSLGERIHK 294

>pdb|3BQC|A Chain A, High Ph-Value Crystal Structure Of Emodin In Complex With The Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 192 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 251
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 252 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 305
Query: 670 TVNPRLRISAEDALKHEFF 688
             + + R++A +A++H +F
Sbjct: 306 RYDHQSRLTAREAMEHPYF 324

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 192 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 251
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 252 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 296
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 297 MLTFNPHKRIEVEQALAHPYL 317

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 193 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 252
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 253 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 297
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 298 MLTFNPHKRIEVEQALAHPYL 318

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 196 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 255
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 256 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 300
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 301 MLTFNPHKRIEVEQALAHPYL 321

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 188 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 247
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 248 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 292
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 293 MLTFNPHKRIEVEQALAHPYL 313

>pdb|3NSZ|A Chain A, Human Ck2 Catalytic Domain In Complex With Amppn Length = 330

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 191 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 250
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 251 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 304
Query: 670 TVNPRLRISAEDALKHEFF 688
             + + R++A +A++H +F
Sbjct: 305 RYDHQSRLTAREAMEHPYF 323

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 208 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 267
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 268 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 312
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 313 MLTFNPHKRIEVEQALAHPYL 333

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 73/168 (43%), Gaps = 24/168 (14%)
Query: 190 DQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRM 249
           D +N   L +F  F VE E G G    VYR ++K      A+K       K  V  E+ +
Sbjct: 44  DGSNRDALSDF--FEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGV 101
Query: 250 LERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC------- 302
           L R    N IIK +  F+       VLE V     E+  + ++       GY        
Sbjct: 102 LLRLSHPN-IIKLKEIFETPTEISLVLELVTGG--ELFDRIVE------KGYYSERDAAD 152
Query: 303 ----LFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYL--IDFNLAMV 344
               +  A+A LH+ GIVHRD+KP N L++  A    L   DF L+ +
Sbjct: 153 AVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKI 200

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 38/135 (28%)
Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT G+ APE+L R    GP++D+WS G+    L+ G  PF+ +           RG + +
Sbjct: 212 GTPGYCAPEIL-RGCAYGPEVDMWSVGIITYILLCGFEPFYDE-----------RGDQFM 259
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
           +   ++ N E  F               P W           + +  +  DLV K + ++
Sbjct: 260 FR--RILNCEYYFIS-------------PWW-----------DEVSLNAKDLVRKLIVLD 293
Query: 673 PRLRISAEDALKHEF 687
           P+ R++   AL+H +
Sbjct: 294 PKKRLTTFQALQHPW 308

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 208 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 267
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 268 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 312
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 313 MLTFNPHKRIEVEQALAHPYL 333

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 192 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 251
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 252 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 296
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 297 MLTFNPHKRIEVEQALAHPYL 317

>pdb|3Q04|A Chain A, Crystal Structure Of The Apo-Form Of Human Ck2 Alpha At Ph 8.5 Length = 328

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 190 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 249
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 250 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 303
Query: 670 TVNPRLRISAEDALKHEFF 688
             + + R++A +A++H +F
Sbjct: 304 RYDHQSRLTAREAMEHPYF 322

>pdb|2ZJW|A Chain A, Crystal Structure Of Human Ck2 Alpha Complexed With Ellagic Acid Length = 340

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+
Sbjct: 197 VASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGT 256
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           EDL++    +N E     D      L   +   W + +      L V P +L D +DK L
Sbjct: 257 EDLYDYIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLL 310
Query: 670 TVNPRLRISAEDALKHEFF 688
             + + R++A +A++H +F
Sbjct: 311 RYDHQSRLTAREAMEHPYF 329

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 192 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 251
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 252 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 296
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 297 MLTFNPHKRIEVEQALAHPYL 317

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 193 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 252
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 253 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 297
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 298 MLTFNPHKRIEVEQALAHPYL 318

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 194 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 253
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 254 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 298
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 299 MLTFNPHKRIEVEQALAHPYL 319

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 185 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 244
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 245 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 289
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 290 MLTFNPHKRIEVEQALAHPYL 310

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 192 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 251
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 252 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 296
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 297 MLTFNPHKRIEVEQALAHPYL 317

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 188 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 247
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 248 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 292
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 293 MLTFNPHKRIEVEQALAHPYL 313

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 190 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 249
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 250 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 294
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 295 MLTFNPHKRIEVEQALAHPYL 315

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 186 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 245
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 246 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 290
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 291 MLTFNPHKRIEVEQALAHPYL 311

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 188 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 247
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 248 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 292
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 293 MLTFNPHKRIEVEQALAHPYL 313

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 192 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 251
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 252 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 296
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 297 MLTFNPHKRIEVEQALAHPYL 317

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 192 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 251
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 252 SQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 296
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 297 MLTFNPHKRIEVEQALAHPYL 317

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 29/178 (16%)
Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIK 261
           F + E  G+G YG VY+ R    G + AIK        +  +  E+ ML+++     I  
Sbjct: 26  FELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIAT 85
Query: 262 YEGCF------KCGDSDCFVLEH---------VKHDRPEVLKKEIDLSQLQWYGYC---L 303
           Y G F         D    V+E          +K+ +   LK+E       W  Y    +
Sbjct: 86  YYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEE-------WIAYICREI 138
Query: 304 FRALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
            R L+ LH+  ++HRD+K  N L +  A VK  L+DF ++         + T  GT Y
Sbjct: 139 LRGLSHLHQHKVIHRDIKGQNVLLTENAEVK--LVDFGVSAQLDRTVGRRNTFIGTPY 194

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 14/144 (9%)
Query: 210 GSGGYGTVYRARRKNDGTVVA---IKCPHANASKHYVS----NELRMLERFGGKNFIIKY 262
           G G + TVY+AR KN   +VA   IK  H + +K  ++     E+++L+     N II  
Sbjct: 19  GEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPN-IIGL 77
Query: 263 EGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQWYGYCLFRALASLHKQGIVHR 318
              F    +   V + ++ D  EV+ K+  L    S ++ Y     + L  LH+  I+HR
Sbjct: 78  LDAFGHKSNISLVFDFMETDL-EVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHR 136
Query: 319 DVKPGNFLFSCKAVKGYLIDFNLA 342
           D+KP N L     V   L DF LA
Sbjct: 137 DLKPNNLLLDENGVLK-LADFGLA 159

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 34/146 (23%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLW 613
           T+ +RAPE+LF ++  G  +D+W+ G  L  L++ R PF             L G  DL 
Sbjct: 175 TRWYRAPELLFGARMYGVGVDMWAVGCILAELLL-RVPF-------------LPGDSDLD 220
Query: 614 EVAKLHN-----RESSFPE-----DLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD 663
           ++ ++        E  +P+     D    KS P I L                    L D
Sbjct: 221 QLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHH----------IFSAAGDDLLD 270
Query: 664 LVDKCLTVNPRLRISAEDALKHEFFA 689
           L+      NP  RI+A  ALK ++F+
Sbjct: 271 LIQGLFLFNPCARITATQALKMKYFS 296

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 59/146 (40%), Gaps = 19/146 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 190 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 249
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL     L  R            SLP  N   W +L            S   DL+DK
Sbjct: 250 SQEDLNCGINLKARNYLL--------SLPHKNKVPWNRLFPNAD-------SKALDLLDK 294
Query: 668 CLTVNPRLRISAEDALKHEFFAPCHE 693
            LT NP  RI  E AL H + A  ++
Sbjct: 295 MLTFNPHKRIEVEQALAHPYLAQYYD 320

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 91/225 (40%), Gaps = 48/225 (21%)
Query: 502 AVAGAGLMNKGP---SDLSDLQILLLTKLHPVPVLII-FYLLLGNGKQKKDGPCAGTKGF 557
            ++G   M+K      DL    +LL +K     + II F L       KK     GT  +
Sbjct: 135 VLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYY 194
Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAK 617
            APEVL  +  +  K D+WS GV L  L+ G  PF G  E +I              + K
Sbjct: 195 IAPEVLHGTYDE--KCDVWSTGVILYILLSGCPPFNGANEYDI--------------LKK 238
Query: 618 LHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI 677
           +   + +F              LP+W K           +  S  DL+ K LT  P +RI
Sbjct: 239 VEKGKYTF-------------ELPQWKK-----------VSESAKDLIRKMLTYVPSMRI 274
Query: 678 SAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTTGNPSHKQCSAR 722
           SA DAL HE+     +   K+++     S+DN   N    Q + +
Sbjct: 275 SARDALDHEWI----QTYTKEQISVDVPSLDNAILNIRQFQGTQK 315

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 12/141 (8%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ-NIKDIAKLRGSEDL 612
           ++ +RAPE++F +QH    +DIWS G     +M+G   F GD     + +I ++ G    
Sbjct: 194 SRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSR 253
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
             + KL+   +    DLY +K +P      W  + +   D         +DL+   L   
Sbjct: 254 EVLRKLNPSHTDV--DLYNSKGIP------WSNVFS---DHSLKDAKEAYDLLSALLQYL 302
Query: 673 PRLRISAEDALKHEFFAPCHE 693
           P  R+   +AL H +F   H+
Sbjct: 303 PEERMKPYEALCHPYFDELHD 323

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG----DPEQNIKDIAKLR 607
             T+ +RAPE++  S+     +DIWS G  L  ++  R  F G    D   +I  I    
Sbjct: 186 VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSP 245
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             EDL  +  L  R            SLP  N   W +L            S   DL+DK
Sbjct: 246 EQEDLNCIINLKARNYLL--------SLPHKNKVPWNRLFPNA-------DSKALDLLDK 290
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            LT NP  RI  E AL H + 
Sbjct: 291 MLTFNPHKRIEVEQALAHPYL 311

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 85/209 (40%), Gaps = 45/209 (21%)
Query: 515 DLSDLQILLLTKLHPVPVLII-FYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKL 573
           DL    +LL +K     + II F L       KK     GT  + APEVL  +  +  K 
Sbjct: 174 DLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDE--KC 231
Query: 574 DIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAK 633
           D+WS GV L  L+ G  PF G  E +I              + K+   + +F        
Sbjct: 232 DVWSTGVILYILLSGCPPFNGANEYDI--------------LKKVEKGKYTF-------- 269
Query: 634 SLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE 693
                 LP+W K           +  S  DL+ K LT  P +RISA DAL HE+     +
Sbjct: 270 -----ELPQWKK-----------VSESAKDLIRKMLTYVPSMRISARDALDHEWI----Q 309
Query: 694 MLRKQKLLRQGSSIDNTTGNPSHKQCSAR 722
              K+++     S+DN   N    Q + +
Sbjct: 310 TYTKEQISVDVPSLDNAILNIRQFQGTQK 338

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 85/209 (40%), Gaps = 45/209 (21%)
Query: 515 DLSDLQILLLTKLHPVPVLII-FYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKL 573
           DL    +LL +K     + II F L       KK     GT  + APEVL  +  +  K 
Sbjct: 175 DLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDE--KC 232
Query: 574 DIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAK 633
           D+WS GV L  L+ G  PF G  E +I              + K+   + +F        
Sbjct: 233 DVWSTGVILYILLSGCPPFNGANEYDI--------------LKKVEKGKYTF-------- 270
Query: 634 SLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE 693
                 LP+W K           +  S  DL+ K LT  P +RISA DAL HE+     +
Sbjct: 271 -----ELPQWKK-----------VSESAKDLIRKMLTYVPSMRISARDALDHEWI----Q 310
Query: 694 MLRKQKLLRQGSSIDNTTGNPSHKQCSAR 722
              K+++     S+DN   N    Q + +
Sbjct: 311 TYTKEQISVDVPSLDNAILNIRQFQGTQK 339

>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3 Length = 361

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 36/137 (26%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APEVL R ++ G   D+WS GVTL  +++G  P F DPE+  +D  K      
Sbjct: 178 VGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYP-FEDPEEP-RDYRK------ 229
Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
              + ++ + + S P+D+  +        PE C LI+                  +    
Sbjct: 230 --TIQRILSVKYSIPDDIRIS--------PECCHLIS------------------RIFVA 261
Query: 672 NPRLRISAEDALKHEFF 688
           +P  RIS  +   H +F
Sbjct: 262 DPATRISIPEIKTHSWF 278

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 14/165 (8%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCG 269
           G+G +G V++A+   +   VAIK       K + + EL+++      N +      +  G
Sbjct: 49  GNGSFGVVFQAKLV-ESDEVAIK--KVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNG 105
Query: 270 DS-DCFVLEHVKHDRPEV----------LKKEIDLSQLQWYGYCLFRALASLHKQGIVHR 318
           D  D   L  V    PE           LK+ + +  ++ Y Y L R+LA +H  GI HR
Sbjct: 106 DKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHR 165
Query: 319 DVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
           D+KP N L    +    LIDF  A +   G  N + +    Y  P
Sbjct: 166 DIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSXICSRYYRAP 210

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           ++ +RAPE++F + +    +DIWS G  +  LM G+  F G+     + +I K+ G+   
Sbjct: 204 SRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSR 263
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++  ++          Y     P I    + K+   R       P    DL+ + L   
Sbjct: 264 EQIKTMNPN--------YMEHKFPQIRPHPFSKVFRPR------TPPDAIDLISRLLEYT 309
Query: 673 PRLRISAEDALKHEFF 688
           P  R++A +AL H FF
Sbjct: 310 PSARLTAIEALCHPFF 325

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT+ + +PE L +  H   + DIWS G++L+ + +GR P    P  + K++  + G + 
Sbjct: 226 VGTRSYMSPERL-QGTHYSVQSDIWSMGLSLVEMAVGRYPI---PPPDAKELELMFGCQV 281
Query: 612 LWEVAKLHNRESSFPEDL--YAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-----DL 664
             + A+   R  +    L  Y   S PP+ + E    I   P     +PS++F     D 
Sbjct: 282 EGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPP--PKLPSAVFSLEFQDF 339
Query: 665 VDKCLTVNPRLRISAEDALKHEFF 688
           V+KCL  NP  R   +  + H F 
Sbjct: 340 VNKCLIKNPAERADLKQLMVHAFI 363

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 84/209 (40%), Gaps = 45/209 (21%)
Query: 515 DLSDLQILLLTKLHPVPVLII-FYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKL 573
           DL    +LL +K     + II F L       KK     GT  + APEVL  +  +  K 
Sbjct: 151 DLKPENLLLESKSKDANIRIIDFGLSTHFEASKKXKDKIGTAYYIAPEVLHGTYDE--KC 208
Query: 574 DIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAK 633
           D+WS GV L  L+ G  PF G  E +I              + K+   + +F        
Sbjct: 209 DVWSTGVILYILLSGCPPFNGANEYDI--------------LKKVEKGKYTF-------- 246
Query: 634 SLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE 693
                 LP+W K           +  S  DL+ K LT  P  RISA DAL HE+     +
Sbjct: 247 -----ELPQWKK-----------VSESAKDLIRKXLTYVPSXRISARDALDHEWI----Q 286
Query: 694 MLRKQKLLRQGSSIDNTTGNPSHKQCSAR 722
              K+++     S+DN   N    Q + +
Sbjct: 287 TYTKEQISVDVPSLDNAILNIRQFQGTQK 315

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGS- 609
             T+ +RAPE++    H    +DIWS G  +  L+ G+  F G D    +K I ++ G+ 
Sbjct: 189 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKALFPGSDYIDQLKRIMEVVGTP 248
Query: 610 --EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             E L +++  H R           +SLPP+   +   +      F    P ++ DL+ +
Sbjct: 249 SPEVLAKISSEHARTY--------IQSLPPMPQKDLSSI------FRGANPLAI-DLLGR 293
Query: 668 CLTVNPRLRISAEDALKHEFFAPCHE 693
            L ++   R+SA +AL H +F+  H+
Sbjct: 294 MLVLDSDQRVSAAEALAHAYFSQYHD 319

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGS- 609
             T+ +RAPE++    H    +DIWS G  +  L+ G+  F G D    +K I ++ G+ 
Sbjct: 189 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKALFPGSDYIDQLKRIMEVVGTP 248
Query: 610 --EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             E L +++  H R           +SLPP+   +   +      F    P ++ DL+ +
Sbjct: 249 SPEVLAKISSEHARTY--------IQSLPPMPQKDLSSI------FRGANPLAI-DLLGR 293
Query: 668 CLTVNPRLRISAEDALKHEFFAPCHE 693
            L ++   R+SA +AL H +F+  H+
Sbjct: 294 MLVLDSDQRVSAAEALAHAYFSQYHD 319

>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum In Complex With Indirubin E804 Length = 383

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDL 612
           ++ +RAPE++  +    P +D+WS G     L++G+  F G+     +  I ++ G+   
Sbjct: 204 SRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTK 263
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ +++          Y     P +   +W K++       E  PS   DL+++ L   
Sbjct: 264 EQMIRMNPH--------YTEVRFPTLKAKDWRKILP------EGTPSLAIDLLEQILRYE 309
Query: 673 PRLRISAEDALKHEFF 688
           P LRI+  +A+ H FF
Sbjct: 310 PDLRINPYEAMAHPFF 325

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII 260
           E F V E+ G G YG+VY+A  K  G +VAIK     +    +  E+ ++++    + ++
Sbjct: 29  EVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPH-VV 87
Query: 261 KYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIV 316
           KY G +        V+E+       D   +  K +   ++        + L  LH    +
Sbjct: 88  KYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKI 147
Query: 317 HRDVKPGNFLFSCKAVKGYLIDFNLA 342
           HRD+K GN L + +     L DF +A
Sbjct: 148 HRDIKAGNILLNTEG-HAKLADFGVA 172

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGS- 609
             T+ +RAPE++    H    +DIWS G  +  L+ G+  F G D    +K I ++ G+ 
Sbjct: 181 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKALFPGSDYIDQLKRIMEVVGTP 240
Query: 610 --EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
             E L +++  H R           +SLPP+   +   +      F    P ++ DL+ +
Sbjct: 241 SPEVLAKISSEHARTY--------IQSLPPMPQKDLSSI------FRGANPLAI-DLLGR 285
Query: 668 CLTVNPRLRISAEDALKHEFFAPCHE 693
            L ++   R+SA +AL H +F+  H+
Sbjct: 286 MLVLDSDQRVSAAEALAHAYFSQYHD 311

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 78/190 (41%), Gaps = 44/190 (23%)
Query: 502 AVAGAGLMNKGP---SDLSDLQILLLTKLHPVPVLII-FYLLLGNGKQKKDGPCAGTKGF 557
            ++G   M+K      DL    +LL +K     + II F L       KK     GT  +
Sbjct: 141 VLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYY 200
Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAK 617
            APEVL  +  +  K D+WS GV L  L+ G  PF G  E +I              + K
Sbjct: 201 IAPEVLHGTYDE--KCDVWSTGVILYILLSGCPPFNGANEYDI--------------LKK 244
Query: 618 LHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI 677
           +   + +F              LP+W K           +  S  DL+ K LT  P +RI
Sbjct: 245 VEKGKYTF-------------ELPQWKK-----------VSESAKDLIRKMLTYVPSMRI 280
Query: 678 SAEDALKHEF 687
           SA DAL HE+
Sbjct: 281 SARDALDHEW 290

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 39/133 (29%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
           AGT G+ +PEVL +  +  P +DIW+ GV L  L++G  PF+ + +  +           
Sbjct: 191 AGTPGYLSPEVLKKDPYSKP-VDIWACGVILYILLVGYPPFWDEDQHRL----------- 238
Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
               A++      +P              PEW           + +      L+D  LTV
Sbjct: 239 ---YAQIKAGAYDYPS-------------PEW-----------DTVTPEAKSLIDSMLTV 271
Query: 672 NPRLRISAEDALK 684
           NP+ RI+A+ ALK
Sbjct: 272 NPKKRITADQALK 284

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 76/191 (39%), Gaps = 36/191 (18%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIK----CPHANASKHYVSNELRMLERFGGKNFIIKYEGC 265
           G G YG V++ R ++ G +VAIK           K     E+RML++    N +   E  
Sbjct: 12  GEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLE-V 70
Query: 266 FKCGDSDCFVLEHVKH------DR-----PEVLKKEIDLSQLQWYGYCLFRALASLHKQG 314
           F+       V E+  H      DR     PE L K I    LQ   +C        HK  
Sbjct: 71  FRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFC--------HKHN 122
Query: 315 IVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKS 374
            +HRDVKP N L +  +V   L DF  A +         T P   Y   V  R   S + 
Sbjct: 123 CIHRDVKPENILITKHSVIK-LCDFGFARL--------LTGPSDYYDDEVATRWYRSPEL 173
Query: 375 LVAVKQDTRKG 385
           LV    DT+ G
Sbjct: 174 LVG---DTQYG 181

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT+ + +PE L +  H   + DIWS G++L+ + +GR P    P  + K++  + G + 
Sbjct: 164 VGTRSYMSPERL-QGTHYSVQSDIWSMGLSLVEMAVGRYPI---PPPDAKELELMFGCQV 219
Query: 612 LWEVAKLHNRESSFPEDL--YAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-----DL 664
             + A+   R  +    L  Y   S PP+ + E    I   P     +PS +F     D 
Sbjct: 220 EGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPP--PKLPSGVFSLEFQDF 277
Query: 665 VDKCLTVNPRLRISAEDALKHEFF 688
           V+KCL  NP  R   +  + H F 
Sbjct: 278 VNKCLIKNPAERADLKQLMVHAFI 301

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT+ + +PE L +  H   + DIWS G++L+ + +GR P    P  + K++  + G + 
Sbjct: 164 VGTRSYMSPERL-QGTHYSVQSDIWSMGLSLVEMAVGRYPI---PPPDAKELELMFGCQV 219
Query: 612 LWEVAKLHNRESSFPEDL--YAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-----DL 664
             + A+   R  +    L  Y   S PP+ + E    I   P     +PS +F     D 
Sbjct: 220 EGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPP--PKLPSGVFSLEFQDF 277
Query: 665 VDKCLTVNPRLRISAEDALKHEFF 688
           V+KCL  NP  R   +  + H F 
Sbjct: 278 VNKCLIKNPAERADLKQLMVHAFI 301

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT+ + +PE L +  H   + DIWS G++L+ + +GR P    P  + K++  + G + 
Sbjct: 164 VGTRSYMSPERL-QGTHYSVQSDIWSMGLSLVEMAVGRYPI---PPPDAKELELMFGCQV 219
Query: 612 LWEVAKLHNRESSFPEDL--YAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-----DL 664
             + A+   R  +    L  Y   S PP+ + E    I   P     +PS +F     D 
Sbjct: 220 EGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPP--PKLPSGVFSLEFQDF 277
Query: 665 VDKCLTVNPRLRISAEDALKHEFF 688
           V+KCL  NP  R   +  + H F 
Sbjct: 278 VNKCLIKNPAERADLKQLMVHAFI 301

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT+ + +PE L +  H   + DIWS G++L+ + +GR P    P  + K++  + G + 
Sbjct: 164 VGTRSYMSPERL-QGTHYSVQSDIWSMGLSLVEMAVGRYPI---PPPDAKELELMFGCQV 219
Query: 612 LWEVAKLHNRESSFPEDL--YAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-----DL 664
             + A+   R  +    L  Y   S PP+ + E    I   P     +PS +F     D 
Sbjct: 220 EGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPP--PKLPSGVFSLEFQDF 277
Query: 665 VDKCLTVNPRLRISAEDALKHEFF 688
           V+KCL  NP  R   +  + H F 
Sbjct: 278 VNKCLIKNPAERADLKQLMVHAFI 301

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 39/133 (29%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
           AGT G+ +PEVL +  +  P +DIW+ GV L  L++G  PF+ + +  +           
Sbjct: 167 AGTPGYLSPEVLKKDPYSKP-VDIWACGVILYILLVGYPPFWDEDQHRL----------- 214
Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
               A++      +P              PEW           + +      L+D  LTV
Sbjct: 215 ---YAQIKAGAYDYPS-------------PEW-----------DTVTPEAKSLIDSMLTV 247
Query: 672 NPRLRISAEDALK 684
           NP+ RI+A+ ALK
Sbjct: 248 NPKKRITADQALK 260

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 39/133 (29%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
           AGT G+ +PEVL +  +  P +DIW+ GV L  L++G  PF+ + +  +           
Sbjct: 168 AGTPGYLSPEVLKKDPYSKP-VDIWACGVILYILLVGYPPFWDEDQHRL----------- 215
Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
               A++      +P              PEW           + +      L+D  LTV
Sbjct: 216 ---YAQIKAGAYDYPS-------------PEW-----------DTVTPEAKSLIDSMLTV 248
Query: 672 NPRLRISAEDALK 684
           NP+ RI+A+ ALK
Sbjct: 249 NPKKRITADQALK 261

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 39/133 (29%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
           AGT G+ +PEVL +  +  P +DIW+ GV L  L++G  PF+ + +  +           
Sbjct: 168 AGTPGYLSPEVLKKDPYSKP-VDIWACGVILYILLVGYPPFWDEDQHRL----------- 215
Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
               A++      +P              PEW           + +      L+D  LTV
Sbjct: 216 ---YAQIKAGAYDYPS-------------PEW-----------DTVTPEAKSLIDSMLTV 248
Query: 672 NPRLRISAEDALK 684
           NP+ RI+A+ ALK
Sbjct: 249 NPKKRITADQALK 261

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT+ + +PE L +  H   + DIWS G++L+ + +GR P    P  + K++  + G + 
Sbjct: 191 VGTRSYMSPERL-QGTHYSVQSDIWSMGLSLVEMAVGRYPI---PPPDAKELELMFGCQV 246
Query: 612 LWEVAKLHNRESSFPEDL--YAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-----DL 664
             + A+   R  +    L  +   S PP+ + E    I   P     +PS +F     D 
Sbjct: 247 EGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPP--PKLPSGVFSLEFQDF 304
Query: 665 VDKCLTVNPRLRISAEDALKHEFF 688
           V+KCL  NP  R   +  + H F 
Sbjct: 305 VNKCLIKNPAERADLKQLMVHAFI 328

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY---VSNELRMLERFGGKNFI----IKY 262
           G G YG V  A  K  G +VAIK         +      E+++L+ F  +N I    I+ 
Sbjct: 20  GEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQR 79
Query: 263 EGCFKCGDSDCFVLEHVKHDRPEVLKKE-IDLSQLQWYGYCLFRALASLHKQGIVHRDVK 321
              F+  +    + E ++ D   V+  + +    +Q++ Y   RA+  LH   ++HRD+K
Sbjct: 80  PDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLK 139
Query: 322 PGNFLFSCKAVKGYLIDFNLAMV 344
           P N L +       + DF LA +
Sbjct: 140 PSNLLINSNC-DLKVCDFGLARI 161

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 20/157 (12%)
Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNI 600
            G+Q        T+ +RAPEV+  S      +D+WS G  L  L + R  F G D    +
Sbjct: 173 TGQQSGMTEXVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQL 232
Query: 601 KDIAKLRGS----EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEV 656
             I  + G+     DL  +     RE      +Y A  L  +              F  V
Sbjct: 233 LLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKM--------------FPRV 278
Query: 657 IPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE 693
            P  + DL+ + L  +P  RI+A++AL+H +    H+
Sbjct: 279 NPKGI-DLLQRMLVFDPAKRITAKEALEHPYLQTYHD 314

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY---VSNELRMLERFGGKNFI----IKY 262
           G G YG V  A  K  G +VAIK         +      E+++L+ F  +N I    I+ 
Sbjct: 20  GEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQR 79
Query: 263 EGCFKCGDSDCFVLEHVKHDRPEVLKKE-IDLSQLQWYGYCLFRALASLHKQGIVHRDVK 321
              F+  +    + E ++ D   V+  + +    +Q++ Y   RA+  LH   ++HRD+K
Sbjct: 80  PDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLK 139
Query: 322 PGNFLFSCKAVKGYLIDFNLAMV 344
           P N L +       + DF LA +
Sbjct: 140 PSNLLINSNC-DLKVCDFGLARI 161

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 20/157 (12%)
Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNI 600
            G+Q        T+ +RAPEV+  S      +D+WS G  L  L + R  F G D    +
Sbjct: 173 TGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQL 232
Query: 601 KDIAKLRGS----EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEV 656
             I  + G+     DL  +     RE      +Y A  L  +              F  V
Sbjct: 233 LLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKM--------------FPRV 278
Query: 657 IPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE 693
            P  + DL+ + L  +P  RI+A++AL+H +    H+
Sbjct: 279 NPKGI-DLLQRMLVFDPAKRITAKEALEHPYLQTYHD 314

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 40/133 (30%)
Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APEVL R  +   K D+WSAGV L  L+ G  PF+G  E +I            
Sbjct: 185 GTAYYIAPEVL-RGTYD-EKCDVWSAGVILYILLSGTPPFYGKNEYDI------------ 230
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
             + ++   + +F             +LP+W             I     DL+ K LT +
Sbjct: 231 --LKRVETGKYAF-------------DLPQW-----------RTISDDAKDLIRKMLTFH 264
Query: 673 PRLRISAEDALKH 685
           P LRI+A   L+H
Sbjct: 265 PSLRITATQCLEH 277

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY---VSNELRMLERFGGKNFI----IKY 262
           G G YG V  A  K  G +VAIK         +      E+++L+ F  +N I    I+ 
Sbjct: 20  GEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQR 79
Query: 263 EGCFKCGDSDCFVLEHVKHDRPEVLKKE-IDLSQLQWYGYCLFRALASLHKQGIVHRDVK 321
              F+  +    + E ++ D   V+  + +    +Q++ Y   RA+  LH   ++HRD+K
Sbjct: 80  PDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLK 139
Query: 322 PGNFLFSCKAVKGYLIDFNLAMV 344
           P N L +       + DF LA +
Sbjct: 140 PSNLLINSNC-DLKVCDFGLARI 161

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 20/157 (12%)
Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNI 600
            G+Q        T+ +RAPEV+  S      +D+WS G  L  L + R  F G D    +
Sbjct: 173 TGQQSGMTEYVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQL 232
Query: 601 KDIAKLRGS----EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEV 656
             I  + G+     DL  +     RE      +Y A  L  +              F  V
Sbjct: 233 LLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKM--------------FPRV 278
Query: 657 IPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE 693
            P  + DL+ + L  +P  RI+A++AL+H +    H+
Sbjct: 279 NPKGI-DLLQRMLVFDPAKRITAKEALEHPYLQTYHD 314

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 40/133 (30%)
Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APEVL R  +   K D+WSAGV L  L+ G  PF+G  E +I            
Sbjct: 185 GTAYYIAPEVL-RGTYD-EKCDVWSAGVILYILLSGTPPFYGKNEYDI------------ 230
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
             + ++   + +F             +LP+W             I     DL+ K LT +
Sbjct: 231 --LKRVETGKYAF-------------DLPQW-----------RTISDDAKDLIRKMLTFH 264
Query: 673 PRLRISAEDALKH 685
           P LRI+A   L+H
Sbjct: 265 PSLRITATQCLEH 277

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 67/166 (40%), Gaps = 23/166 (13%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNE-------LRMLERFGGKNFII 260
           E G G YGTVY+AR  + G  VA+K       +  +          LR LE F   N + 
Sbjct: 11  EIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFEHPNVVR 70
Query: 261 KYEGCFKCGDSD-----CFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLH 311
             + C     +D       V EHV  D    L K     +    ++       R L  LH
Sbjct: 71  LMDVC-ATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH 129
Query: 312 KQGIVHRDVKPGNFLF-SCKAVKGYLIDFNLAMVGFDGSFNQATLP 356
              IVHRD+KP N L  S   VK  L DF LA +    S+  A  P
Sbjct: 130 ANCIVHRDLKPENILVTSGGTVK--LADFGLARI---YSYQMALFP 170

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 28/145 (19%)
Query: 550 PCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLR 607
           P   T  +RAPEVL +S +  P +D+WS G  +   M  R P F G+ E + +  I  L 
Sbjct: 170 PVVVTLWYRAPEVLLQSTYATP-VDMWSVG-CIFAEMFRRKPLFCGNSEADQLGKIFDLI 227
Query: 608 G--SEDLWEVAKLHNRESSFPEDLYAAKSLPPIN--LPEWCKLITKRPDFLEVIPSSLFD 663
           G   ED W       R+ S P   +  +   P+   +PE              +  S   
Sbjct: 228 GLPPEDDWP------RDVSLPRGAFPPRGPRPVQSVVPE--------------MEESGAQ 267
Query: 664 LVDKCLTVNPRLRISAEDALKHEFF 688
           L+ + LT NP  RISA  AL+H + 
Sbjct: 268 LLLEMLTFNPHKRISAFRALQHSYL 292

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 40/133 (30%)
Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APEVL R  +   K D+WSAGV L  L+ G  PF+G  E +I            
Sbjct: 185 GTAYYIAPEVL-RGTYD-EKCDVWSAGVILYILLSGTPPFYGKNEYDI------------ 230
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
             + ++   + +F             +LP+W             I     DL+ K LT +
Sbjct: 231 --LKRVETGKYAF-------------DLPQW-----------RTISDDAKDLIRKMLTFH 264
Query: 673 PRLRISAEDALKH 685
           P LRI+A   L+H
Sbjct: 265 PSLRITATQCLEH 277

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 28/144 (19%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS-- 609
           T  +R P+VLF ++     +D+WSAG     L     P F   D +  +K I +L G+  
Sbjct: 164 TLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAARPLFPGNDVDDQLKRIFRLLGTPT 223
Query: 610 EDLW-EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP---SSLFDLV 665
           E+ W  + KL + +   P  +Y A +                   + V+P   ++  DL+
Sbjct: 224 EEQWPSMTKLPDYK---PYPMYPATT-----------------SLVNVVPKLNATGRDLL 263
Query: 666 DKCLTVNPRLRISAEDALKHEFFA 689
              L  NP  RISAE+AL+H +F+
Sbjct: 264 QNLLKCNPVQRISAEEALQHPYFS 287

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 28/144 (19%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS-- 609
           T  +R P+VLF ++     +D+WSAG     L     P F   D +  +K I +L G+  
Sbjct: 164 TLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPT 223
Query: 610 EDLW-EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP---SSLFDLV 665
           E+ W  + KL + +   P  +Y A +                   + V+P   ++  DL+
Sbjct: 224 EEQWPSMTKLPDYK---PYPMYPATT-----------------SLVNVVPKLNATGRDLL 263
Query: 666 DKCLTVNPRLRISAEDALKHEFFA 689
              L  NP  RISAE+AL+H +F+
Sbjct: 264 QNLLKCNPVQRISAEEALQHPYFS 287

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEG 264
           E+ G G  GTVY A     G  VAI+  +      K  + NE+ ++      N I+ Y  
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN-IVNYLD 84
Query: 265 CFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQGIVHRDVKP 322
            +  GD    V+E++       +  E  + + Q    C    +AL  LH   ++HRD+K 
Sbjct: 85  SYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKS 144
Query: 323 GNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTKY--VPPVNGRK 368
            N L     +VK  L DF            ++T+ GT Y   P V  RK
Sbjct: 145 DNILLGMDGSVK--LTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK 191

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 42/146 (28%)
Query: 544 KQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDI 603
           +Q K     GT  + APEV+ R  + GPK+DIWS G+  + ++ G  P+  +        
Sbjct: 169 EQSKRSTMVGTPYWMAPEVVTRKAY-GPKVDIWSLGIMAIEMIEGEPPYLNE-------- 219
Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF- 662
             LR    L+ +A     E   PE L                             S++F 
Sbjct: 220 NPLRA---LYLIATNGTPELQNPEKL-----------------------------SAIFR 247
Query: 663 DLVDKCLTVNPRLRISAEDALKHEFF 688
           D +++CL ++   R SA++ L+H+F 
Sbjct: 248 DFLNRCLDMDVEKRGSAKELLQHQFL 273

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 21/188 (11%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNF 258
           ++FI  E  GSG +  V+  +++  G + A+KC   + +     + NE+ +L++   +N 
Sbjct: 9   KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHEN- 67
Query: 259 IIKYEGCFKCGDSDCFVLEHVKH--------DRPEVLKKEIDLSQLQWYGYCLFRALASL 310
           I+  E  ++       V++ V          +R    +K+  L   Q     +  A+  L
Sbjct: 68  IVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQ-----VLSAVKYL 122
Query: 311 HKQGIVHRDVKPGNFLFSC--KAVKGYLIDFNLAMVGFDGSFNQAT-LPGTKYVPPVNGR 367
           H+ GIVHRD+KP N L+    +  K  + DF L+ +  +G  + A   PG  YV P    
Sbjct: 123 HENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPG--YVAPEVLA 180
Query: 368 KVPSAKSL 375
           + P +K++
Sbjct: 181 QKPYSKAV 188

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 63/154 (40%), Gaps = 20/154 (12%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNE-------LRMLERFGGKNFII 260
           E G G YGTVY+AR  + G  VA+K       +  +          LR LE F   N + 
Sbjct: 11  EIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFEHPNVVR 70
Query: 261 KYEGCFKCGDSD-----CFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLH 311
             + C     +D       V EHV  D    L K     +    ++       R L  LH
Sbjct: 71  LMDVC-ATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH 129
Query: 312 KQGIVHRDVKPGNFLF-SCKAVKGYLIDFNLAMV 344
              IVHRD+KP N L  S   VK  L DF LA +
Sbjct: 130 ANCIVHRDLKPENILVTSGGTVK--LADFGLARI 161

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 545 QKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKD 602
           Q    P   T  +RAPEVL +S +  P +D+WS G  +   M  R P F G+ E + +  
Sbjct: 165 QMALAPVVVTLWYRAPEVLLQSTYATP-VDMWSVG-CIFAEMFRRKPLFCGNSEADQLGK 222
Query: 603 IAKLRG--SEDLWEVAKLHNRESSFPEDLYAAKSLPPIN--LPEWCKLITKRPDFLEVIP 658
           I  L G   ED W       R+ S P   +  +   P+   +PE              + 
Sbjct: 223 IFDLIGLPPEDDWP------RDVSLPRGAFPPRGPRPVQSVVPE--------------ME 262
Query: 659 SSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
            S   L+ + LT NP  RISA  AL+H + 
Sbjct: 263 ESGAQLLLEMLTFNPHKRISAFRALQHSYL 292

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 63/154 (40%), Gaps = 20/154 (12%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNE-------LRMLERFGGKNFII 260
           E G G YGTVY+AR  + G  VA+K       +  +          LR LE F   N + 
Sbjct: 11  EIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFEHPNVVR 70
Query: 261 KYEGCFKCGDSD-----CFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLH 311
             + C     +D       V EHV  D    L K     +    ++       R L  LH
Sbjct: 71  LMDVC-ATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH 129
Query: 312 KQGIVHRDVKPGNFLF-SCKAVKGYLIDFNLAMV 344
              IVHRD+KP N L  S   VK  L DF LA +
Sbjct: 130 ANCIVHRDLKPENILVTSGGTVK--LADFGLARI 161

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 64/145 (44%), Gaps = 28/145 (19%)
Query: 550 PCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLR 607
           P   T  +RAPEVL +S +  P +D+WS G  +   M  R P F G+ E + +  I  L 
Sbjct: 170 PVVVTLWYRAPEVLLQSTYATP-VDMWSVG-CIFAEMFRRKPLFCGNSEADQLGKIFDLI 227
Query: 608 G--SEDLWEVAKLHNRESSFPEDLYAAKSLPPIN--LPEWCKLITKRPDFLEVIPSSLFD 663
           G   ED W       R+ S P   +  +   P+   +PE              +  S   
Sbjct: 228 GLPPEDDWP------RDVSLPRGAFPPRGPRPVQSVVPE--------------MEESGAQ 267
Query: 664 LVDKCLTVNPRLRISAEDALKHEFF 688
           L+ + LT NP  RISA  AL+H + 
Sbjct: 268 LLLEMLTFNPHKRISAFRALQHSYL 292

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 78/187 (41%), Gaps = 21/187 (11%)
Query: 190 DQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVS 244
           + +N   + NFE   V    G G +G V  AR K  G + A+K    +            
Sbjct: 15  NSSNRLGIDNFEFIRVL---GKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTM 71
Query: 245 NELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH-DRPEVLKKE--IDLSQLQWYGY 301
            E R+L       F+ +   CF+  D   FV+E V   D    ++K    D ++ ++Y  
Sbjct: 72  TEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAA 131
Query: 302 CLFRALASLHKQGIVHRDVKPGNFLFS----CKAVKGYLIDFNLAMVGFDGSFNQATLPG 357
            +  AL  LH +GI++RD+K  N L      CK     L DF +   G       AT  G
Sbjct: 132 EIISALMFLHDKGIIYRDLKLDNVLLDHEGHCK-----LADFGMCKEGICNGVTTATFCG 186
Query: 358 T-KYVPP 363
           T  Y+ P
Sbjct: 187 TPDYIAP 193

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 545 QKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ 598
           Q KD    GT  + APEVL + ++ G   D+WS GVTL  +++G  P F DPE+
Sbjct: 172 QPKD--TVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYP-FEDPEE 222

>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6 Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ 598
             GT  + APEVL + ++ G   D+WS GVTL  +++G  P F DPE+
Sbjct: 176 AVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYP-FEDPEE 222

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ 598
            GT  + APEVL + ++ G   D+WS GVTL  +++G  P F DPE+
Sbjct: 176 VGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYP-FEDPEE 221

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 64/157 (40%), Gaps = 23/157 (14%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIK---CPHANASKHYVSNE-------LRMLERFGGKN 257
           E G G YGTVY+AR  + G  VA+K    P+       +          LR LE F   N
Sbjct: 16  EIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPN 75
Query: 258 FIIKYEGCFKCGDSD-----CFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALA 308
            +   + C     +D       V EHV  D    L K     +    ++       R L 
Sbjct: 76  VVRLMDVC-ATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLD 134
Query: 309 SLHKQGIVHRDVKPGNFLF-SCKAVKGYLIDFNLAMV 344
            LH   IVHRD+KP N L  S   VK  L DF LA +
Sbjct: 135 FLHANCIVHRDLKPENILVTSGGTVK--LADFGLARI 169

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 550 PCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLR 607
           P   T  +RAPEVL +S +  P +D+WS G  +   M  R P F G+ E + +  I  L 
Sbjct: 178 PVVVTLWYRAPEVLLQSTYATP-VDMWSVG-CIFAEMFRRKPLFCGNSEADQLGKIFDLI 235
Query: 608 G--SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS---SLF 662
           G   ED W       R+ S P   +  +   P+                 V+P    S  
Sbjct: 236 GLPPEDDWP------RDVSLPRGAFPPRGPRPVQ---------------SVVPEMEESGA 274
Query: 663 DLVDKCLTVNPRLRISAEDALKHEFF 688
            L+ + LT NP  RISA  AL+H + 
Sbjct: 275 QLLLEMLTFNPHKRISAFRALQHSYL 300

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ 598
            GT  + APEVL + ++ G   D+WS GVTL  +++G  P F DPE+
Sbjct: 177 VGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYP-FEDPEE 222

>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase Length = 362

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ 598
            GT  + APEVL + ++ G   D+WS GVTL  +++G  P F DPE+
Sbjct: 177 VGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYP-FEDPEE 222

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 43/141 (30%)
Query: 553 GTKGFRAPEVLFRSQHQ-----GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLR 607
           GT G+ APE+L  S  +     G ++D+W+ GV L  L+ G  PF+     + + I  LR
Sbjct: 261 GTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFW-----HRRQILMLR 315
Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
                              E  Y   S      PEW           +   S++ DL+ +
Sbjct: 316 ----------------MIMEGQYQFSS------PEW-----------DDRSSTVKDLISR 342
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L V+P  R++AE AL+H FF
Sbjct: 343 LLQVDPEARLTAEQALQHPFF 363

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 181 LKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP--HANA 238
            KA      DQ + ++L   +S++   + G G  G V  AR K+ G  VA+K        
Sbjct: 30  FKAALRMVVDQGDPRLL--LDSYV---KIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQ 84
Query: 239 SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQW 298
            +  + NE+ ++  +   N +  Y+  +  G+    ++E ++      +  ++ L++ Q 
Sbjct: 85  RRELLFNEVVIMRDYQHFNVVEMYKS-YLVGEELWVLMEFLQGGALTDIVSQVRLNEEQI 143
Query: 299 YGYC--LFRALASLHKQGIVHRDVKPGNFLFS 328
              C  + +ALA LH QG++HRD+K  + L +
Sbjct: 144 ATVCEAVLQALAYLHAQGVIHRDIKSDSILLT 175

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 18/139 (12%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRGS-- 609
           T  +R PE+L   +  GP +D+W AG  ++  M  R+P   G+ EQ+ +  I++L GS  
Sbjct: 192 TLWYRPPELLLGERDYGPPIDLWGAG-CIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT 250
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
            ++W    + N E     +L   +      + +  K   + P  L        DL+DK L
Sbjct: 251 PEVW--PNVDNYELYEKLELVKGQKR---KVKDRLKAYVRDPYAL--------DLIDKLL 297
Query: 670 TVNPRLRISAEDALKHEFF 688
            ++P  RI ++DAL H+FF
Sbjct: 298 VLDPAQRIDSDDALNHDFF 316

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 18/139 (12%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRGS-- 609
           T  +R PE+L   +  GP +D+W AG  ++  M  R+P   G+ EQ+ +  I++L GS  
Sbjct: 192 TLWYRPPELLLGERDYGPPIDLWGAG-CIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT 250
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
            ++W    + N E     +L   +           + +  R       P +L DL+DK L
Sbjct: 251 PEVW--PNVDNYELYEKLELVKGQK----------RKVKDRLKAYVRDPYAL-DLIDKLL 297
Query: 670 TVNPRLRISAEDALKHEFF 688
            ++P  RI ++DAL H+FF
Sbjct: 298 VLDPAQRIDSDDALNHDFF 316

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 18/139 (12%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRGS-- 609
           T  +R PE+L   +  GP +D+W AG  ++  M  R+P   G+ EQ+ +  I++L GS  
Sbjct: 192 TLWYRPPELLLGERDYGPPIDLWGAG-CIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT 250
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
            ++W    + N E     +L   +           + +  R       P +L DL+DK L
Sbjct: 251 PEVW--PNVDNYELYEKLELVKGQK----------RKVKDRLKAYVRDPYAL-DLIDKLL 297
Query: 670 TVNPRLRISAEDALKHEFF 688
            ++P  RI ++DAL H+FF
Sbjct: 298 VLDPAQRIDSDDALNHDFF 316

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEG 264
           E+ G G  GTVY A     G  VAI+  +      K  + NE+ ++      N I+ Y  
Sbjct: 27  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN-IVNYLD 85
Query: 265 CFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQGIVHRDVKP 322
            +  GD    V+E++       +  E  + + Q    C    +AL  LH   ++HR++K 
Sbjct: 86  SYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRNIKS 145
Query: 323 GNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTKY--VPPVNGRK 368
            N L     +VK  L DF            ++T+ GT Y   P V  RK
Sbjct: 146 DNILLGMDGSVK--LTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRK 192

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 42/146 (28%)
Query: 544 KQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDI 603
           +Q K     GT  + APEV+ R  + GPK+DIWS G+  + ++ G  P+  +        
Sbjct: 170 EQSKRSTMVGTPYWMAPEVVTRKAY-GPKVDIWSLGIMAIEMIEGEPPYLNE-------- 220
Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF- 662
             LR    L+ +A     E   PE L                             S++F 
Sbjct: 221 NPLRA---LYLIATNGTPELQNPEKL-----------------------------SAIFR 248
Query: 663 DLVDKCLTVNPRLRISAEDALKHEFF 688
           D +++CL ++   R SA++ ++H+F 
Sbjct: 249 DFLNRCLEMDVEKRGSAKELIQHQFL 274

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 18/139 (12%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRGS-- 609
           T  +R PE+L   +  GP +D+W AG  ++  M  R+P   G+ EQ+ +  I++L GS  
Sbjct: 191 TLWYRPPELLLGERDYGPPIDLWGAG-CIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT 249
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
            ++W    + N E     +L   +           + +  R       P +L DL+DK L
Sbjct: 250 PEVW--PNVDNYELYEKLELVKGQK----------RKVKDRLKAYVRDPYAL-DLIDKLL 296
Query: 670 TVNPRLRISAEDALKHEFF 688
            ++P  RI ++DAL H+FF
Sbjct: 297 VLDPAQRIDSDDALNHDFF 315

>pdb|4ANM|A Chain A, Complex Of Ck2 With A Cdc7 Inhibitor Length = 335

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 274 FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK 333
            + E+V +   +VL   +    +++Y Y L +AL   H QGI+HRDVKP N +   +  K
Sbjct: 107 LIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRK 166
Query: 334 GYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVK 379
             LID+ LA         +   PG +Y   V  R     + LV ++
Sbjct: 167 LRLIDWGLA---------EFYHPGKEYNVRVASRYFKGPELLVDLQ 203

>pdb|4ANM|A Chain A, Complex Of Ck2 With A Cdc7 Inhibitor Length = 335

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G     ++  + PFF   D    +  IAK+ G+
Sbjct: 188 VASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGT 247
Query: 610 EDLWEVAKLHNRESSFP--EDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
           + L  V     R    P  E L    S  P     W K +    D   ++     D +DK
Sbjct: 248 DGL-NVYLNKYRIELDPQLEALVGRHSRKP-----WLKFMN--ADNQHLVSPEAIDFLDK 299
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  + + R++A +A+ H +F
Sbjct: 300 LLRYDHQERLTALEAMTHPYF 320

>pdb|3PVG|A Chain A, Crystal Structure Of Z. Mays Ck2 Alpha Subunit In Complex With The Inhibitor 4,5,6,7-Tetrabromo-1-Carboxymethylbenzimidazole (K68) Length = 331

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 274 FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK 333
            + E+V +   +VL   +    +++Y Y L +AL   H QGI+HRDVKP N +   +  K
Sbjct: 105 LIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRK 164
Query: 334 GYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVK 379
             LID+ LA         +   PG +Y   V  R     + LV ++
Sbjct: 165 LRLIDWGLA---------EFYHPGKEYNVRVASRYFKGPELLVDLQ 201

>pdb|3PVG|A Chain A, Crystal Structure Of Z. Mays Ck2 Alpha Subunit In Complex With The Inhibitor 4,5,6,7-Tetrabromo-1-Carboxymethylbenzimidazole (K68) Length = 331

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G     ++  + PFF   D    +  IAK+ G+
Sbjct: 186 VASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGT 245
Query: 610 EDLWEVAKLHNRESSFP--EDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
           + L  V     R    P  E L    S  P     W K +    D   ++     D +DK
Sbjct: 246 DGL-NVYLNKYRIELDPQLEALVGRHSRKP-----WLKFMN--ADNQHLVSPEAIDFLDK 297
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  + + R++A +A+ H +F
Sbjct: 298 LLRYDHQERLTALEAMTHPYF 318

>pdb|2PVH|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine Derivatives As Potent Inhibitors Of Protein Kinase Ck2 Length = 352

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 274 FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK 333
            + E+V +   +VL   +    +++Y Y L +AL   H QGI+HRDVKP N +   +  K
Sbjct: 126 LIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRK 185
Query: 334 GYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVK 379
             LID+ LA         +   PG +Y   V  R     + LV ++
Sbjct: 186 LRLIDWGLA---------EFYHPGKEYNVRVASRYFKGPELLVDLQ 222

>pdb|2PVH|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine Derivatives As Potent Inhibitors Of Protein Kinase Ck2 Length = 352

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G     ++  + PFF   D    +  IAK+ G+
Sbjct: 207 VASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGT 266
Query: 610 EDLWEVAKLHNRESSFP---EDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD 666
           + L   A L+          E L    S  P     W K +    D   ++     D +D
Sbjct: 267 DGL--NAYLNKYRIELDPQLEALVGRHSRKP-----WLKFMN--ADNQHLVSPEAIDFLD 317
Query: 667 KCLTVNPRLRISAEDALKHEFF 688
           K L  + + R++A +A+ H +F
Sbjct: 318 KLLRYDHQERLTALEAMTHPYF 339

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 10/169 (5%)
Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEG 264
           E+ G G  GTVY A     G  VAI+  +      K  + NE+ ++      N I+ Y  
Sbjct: 27  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN-IVNYLD 85
Query: 265 CFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQGIVHRDVKP 322
            +  GD    V+E++       +  E  + + Q    C    +AL  LH   ++HRD+K 
Sbjct: 86  SYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKS 145
Query: 323 GNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTKY--VPPVNGRK 368
            N L     +VK  L DF            ++ + GT Y   P V  RK
Sbjct: 146 DNILLGMDGSVK--LTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRK 192

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 42/146 (28%)
Query: 544 KQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDI 603
           +Q K     GT  + APEV+ R  + GPK+DIWS G+  + ++ G  P+  +        
Sbjct: 170 EQSKRSXMVGTPYWMAPEVVTRKAY-GPKVDIWSLGIMAIEMIEGEPPYLNE-------- 220
Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF- 662
             LR    L+ +A     E   PE L                             S++F 
Sbjct: 221 NPLRA---LYLIATNGTPELQNPEKL-----------------------------SAIFR 248
Query: 663 DLVDKCLTVNPRLRISAEDALKHEFF 688
           D +++CL ++   R SA++ ++H+F 
Sbjct: 249 DFLNRCLEMDVEKRGSAKELIQHQFL 274

>pdb|2QC6|A Chain A, Protein Kinase Ck2 In Complex With Dbc Length = 332

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 274 FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK 333
            + E+V +   +VL   +    +++Y Y L +AL   H QGI+HRDVKP N +   +  K
Sbjct: 106 LIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRK 165
Query: 334 GYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVK 379
             LID+ LA         +   PG +Y   V  R     + LV ++
Sbjct: 166 LRLIDWGLA---------EFYHPGKEYNVRVASRYFKGPELLVDLQ 202

>pdb|2QC6|A Chain A, Protein Kinase Ck2 In Complex With Dbc Length = 332

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G     ++  + PFF   D    +  IAK+ G+
Sbjct: 187 VASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGT 246
Query: 610 EDLWEVAKLHNRESSFP--EDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
           + L  V     R    P  E L    S  P     W K +    D   ++     D +DK
Sbjct: 247 DGL-NVYLNKYRIELDPQLEALVGRHSRKP-----WLKFMN--ADNQHLVSPEAIDFLDK 298
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  + + R++A +A+ H +F
Sbjct: 299 LLRYDHQERLTALEAMTHPYF 319

>pdb|1DS5|A Chain A, Dimeric Crystal Structure Of The Alpha Subunit In Complex With Two Beta Peptides Mimicking The Architecture Of The Tetrameric Protein Kinase Ck2 Holoenzyme. Length = 332

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 274 FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK 333
            + E+V +   +VL   +    +++Y Y L +AL   H QGI+HRDVKP N +   +  K
Sbjct: 106 LIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRK 165
Query: 334 GYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVK 379
             LID+ LA         +   PG +Y   V  R     + LV ++
Sbjct: 166 LRLIDWGLA---------EFYHPGKEYNVRVASRYFKGPELLVDLQ 202

>pdb|1DS5|A Chain A, Dimeric Crystal Structure Of The Alpha Subunit In Complex With Two Beta Peptides Mimicking The Architecture Of The Tetrameric Protein Kinase Ck2 Holoenzyme. Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G     ++  + PFF   D    +  IAK+ G+
Sbjct: 187 VASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGT 246
Query: 610 EDLWEVAKLHNRESSFP--EDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
           + L  V     R    P  E L    S  P     W K +    D   ++     D +DK
Sbjct: 247 DGL-NVYLNKYRIELDPQLEALVGRHSRKP-----WLKFMN--ADNQHLVSPEAIDFLDK 298
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  + + R++A +A+ H +F
Sbjct: 299 LLRYDHQERLTALEAMTHPYF 319

>pdb|4DGM|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The Inhibitor Apigenin Length = 326

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 274 FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK 333
            + E+V +   +VL   +    +++Y Y L +AL   H QGI+HRDVKP N +   +  K
Sbjct: 105 LIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRK 164
Query: 334 GYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVK 379
             LID+ LA         +   PG +Y   V  R     + LV ++
Sbjct: 165 LRLIDWGLA---------EFYHPGKEYNVRVASRYFKGPELLVDLQ 201

>pdb|4DGM|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The Inhibitor Apigenin Length = 326

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G     ++  + PFF   D    +  IAK+ G+
Sbjct: 186 VASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGT 245
Query: 610 EDLWEVAKLHNRESSFP--EDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
           + L  V     R    P  E L    S  P     W K +    D   ++     D +DK
Sbjct: 246 DGL-NVYLNKYRIELDPQLEALVGRHSRKP-----WLKFMN--ADNQHLVSPEAIDFLDK 297
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  + + R++A +A+ H +F
Sbjct: 298 LLRYDHQERLTALEAMTHPYF 318

>pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase Ck2 (Alpha-Subunit) And Mg-Amppnp Length = 327

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 274 FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK 333
            + E+V +   +VL   +    +++Y Y L +AL   H QGI+HRDVKP N +   +  K
Sbjct: 105 LIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRK 164
Query: 334 GYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVK 379
             LID+ LA         +   PG +Y   V  R     + LV ++
Sbjct: 165 LRLIDWGLA---------EFYHPGKEYNVRVASRYFKGPELLVDLQ 201

>pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase Ck2 (Alpha-Subunit) And Mg-Amppnp Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G     ++  + PFF   D    +  IAK+ G+
Sbjct: 186 VASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGT 245
Query: 610 EDLWEVAKLHNRESSFP--EDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
           + L  V     R    P  E L    S  P     W K +    D   ++     D +DK
Sbjct: 246 DGL-NVYLNKYRIELDPQLEALVGRHSRKP-----WLKFMN--ADNQHLVSPEAIDFLDK 297
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  + + R++A +A+ H +F
Sbjct: 298 LLRYDHQERLTALEAMTHPYF 318

>pdb|4DGN|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The Inhibitor Luteolin Length = 326

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 274 FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK 333
            + E+V +   +VL   +    +++Y Y L +AL   H QGI+HRDVKP N +   +  K
Sbjct: 105 LIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRK 164
Query: 334 GYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVK 379
             LID+ LA         +   PG +Y   V  R     + LV ++
Sbjct: 165 LRLIDWGLA---------EFYHPGKEYNVRVASRYFKGPELLVDLQ 201

>pdb|4DGN|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The Inhibitor Luteolin Length = 326

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G     ++  + PFF   D    +  IAK+ G+
Sbjct: 186 VASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGT 245
Query: 610 EDLWEVAKLHNRESSFP--EDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
           + L  V     R    P  E L    S  P     W K +    D   ++     D +DK
Sbjct: 246 DGL-NVYLNKYRIELDPQLEALVGRHSRKP-----WLKFMN--ADNQHLVSPEAIDFLDK 297
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  + + R++A +A+ H +F
Sbjct: 298 LLRYDHQERLTALEAMTHPYF 318

>pdb|3KXG|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In Complex With The Inhibitor 3,4,5,6,7-Pentabromo-1h-Indazole (K64) Length = 327

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 274 FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK 333
            + E+V +   +VL   +    +++Y Y L +AL   H QGI+HRDVKP N +   +  K
Sbjct: 105 LIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRK 164
Query: 334 GYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVK 379
             LID+ LA         +   PG +Y   V  R     + LV ++
Sbjct: 165 LRLIDWGLA---------EFYHPGKEYNVRVASRYFKGPELLVDLQ 201

>pdb|3KXG|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In Complex With The Inhibitor 3,4,5,6,7-Pentabromo-1h-Indazole (K64) Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G     ++  + PFF   D    +  IAK+ G+
Sbjct: 186 VASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGT 245
Query: 610 EDLWEVAKLHNRESSFP--EDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
           + L  V     R    P  E L    S  P     W K +    D   ++     D +DK
Sbjct: 246 DGL-NVYLNKYRIELDPQLEALVGRHSRKP-----WLKFMN--ADNQHLVSPEAIDFLDK 297
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  + + R++A +A+ H +F
Sbjct: 298 LLRYDHQERLTALEAMTHPYF 318

>pdb|1M2P|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro- AnthraquinoneCK2 KINASE COMPLEX Length = 325

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 274 FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK 333
            + E+V +   +VL   +    +++Y Y L +AL   H QGI+HRDVKP N +   +  K
Sbjct: 105 LIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRK 164
Query: 334 GYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVK 379
             LID+ LA         +   PG +Y   V  R     + LV ++
Sbjct: 165 LRLIDWGLA---------EFYHPGKEYNVRVASRYFKGPELLVDLQ 201

>pdb|1M2P|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro- AnthraquinoneCK2 KINASE COMPLEX Length = 325

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF--GDPEQNIKDIAKLRGS 609
             ++ F+ PE+L   Q     LD+WS G     ++  + PFF   D    +  IAK+ G+
Sbjct: 186 VASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGT 245
Query: 610 EDLWEVAKLHNRESSFP--EDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
           + L  V     R    P  E L    S  P     W K +    D   ++     D +DK
Sbjct: 246 DGL-NVYLNKYRIELDPQLEALVGRHSRKP-----WLKFMN--ADNQHLVSPEAIDFLDK 297
Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L  + + R++A +A+ H +F
Sbjct: 298 LLRYDHQERLTALEAMTHPYF 318

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 10/169 (5%)
Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEG 264
           E+ G G  GTVY A     G  VAI+  +      K  + NE+ ++      N I+ Y  
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN-IVNYLD 84
Query: 265 CFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQGIVHRDVKP 322
            +  GD    V+E++       +  E  + + Q    C    +AL  LH   ++HRD+K 
Sbjct: 85  SYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKS 144
Query: 323 GNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTKY--VPPVNGRK 368
            N L     +VK  L DF            ++ + GT Y   P V  RK
Sbjct: 145 DNILLGMDGSVK--LTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRK 191

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 42/146 (28%)
Query: 544 KQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDI 603
           +Q K     GT  + APEV+ R  + GPK+DIWS G+  + ++ G  P+  +        
Sbjct: 169 EQSKRSXMVGTPYWMAPEVVTRKAY-GPKVDIWSLGIMAIEMIEGEPPYLNE-------- 219
Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF- 662
             LR    L+ +A     E   PE L                             S++F 
Sbjct: 220 NPLRA---LYLIATNGTPELQNPEKL-----------------------------SAIFR 247
Query: 663 DLVDKCLTVNPRLRISAEDALKHEFF 688
           D +++CL ++   R SA++ L+H+F 
Sbjct: 248 DFLNRCLEMDVEKRGSAKELLQHQFL 273

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 15/184 (8%)
Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK---HYVSNELRMLERFGGKNFI 259
           F  +E  G+G +  V  A  K  G + A+KC    A K     + NE+ +L +   +N I
Sbjct: 24  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHEN-I 82
Query: 260 IKYEGCFKCGDSDCFVLEHVK----HDR--PEVLKKEIDLSQLQWYGYCLFRALASLHKQ 313
           +  E  ++  +    V++ V      DR   +    E D S L      +  A+  LH+ 
Sbjct: 83  VALEDIYESPNHLYLVMQLVSGGELFDRIVEKGFYTEKDASTLI---RQVLDAVYYLHRM 139
Query: 314 GIVHRDVKPGNFLFSCKAVKGYLI--DFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPS 371
           GIVHRD+KP N L+  +  +  ++  DF L+ +   G           YV P    + P 
Sbjct: 140 GIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMSTACGTPGYVAPEVLAQKPY 199
Query: 372 AKSL 375
           +K++
Sbjct: 200 SKAV 203

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 10/169 (5%)
Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEG 264
           E+ G G  GTVY A     G  VAI+  +      K  + NE+ ++      N I+ Y  
Sbjct: 26  EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN-IVNYLD 84
Query: 265 CFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQGIVHRDVKP 322
            +  GD    V+E++       +  E  + + Q    C    +AL  LH   ++HRD+K 
Sbjct: 85  SYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKS 144
Query: 323 GNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTKY--VPPVNGRK 368
            N L     +VK  L DF            ++ + GT Y   P V  RK
Sbjct: 145 DNILLGMDGSVK--LTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRK 191

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 42/146 (28%)
Query: 544 KQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDI 603
           +Q K     GT  + APEV+ R  + GPK+DIWS G+  + ++ G  P+  +        
Sbjct: 169 EQSKRSEMVGTPYWMAPEVVTRKAY-GPKVDIWSLGIMAIEMIEGEPPYLNE-------- 219
Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF- 662
             LR    L+ +A     E   PE L                             S++F 
Sbjct: 220 NPLRA---LYLIATNGTPELQNPEKL-----------------------------SAIFR 247
Query: 663 DLVDKCLTVNPRLRISAEDALKHEFF 688
           D +++CL ++   R SA++ L+H+F 
Sbjct: 248 DFLNRCLDMDVEKRGSAKELLQHQFL 273

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF-FGDPEQNIKDIAKLRGSE 610
             T+ +RAPEV+       P  D+WS G  L+   +G T F   D ++++  + ++ G  
Sbjct: 195 VSTRHYRAPEVILALGWSQP-CDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPL 253
Query: 611 DLWEVAKLHNRESSFPEDL-YAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
               + K   R+    + L +   S     +   CK + +     +V    LFDL+ K L
Sbjct: 254 PKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKML 313
Query: 670 TVNPRLRISAEDALKHEFF 688
             +P  RI+  +ALKH FF
Sbjct: 314 EYDPAKRITLREALKHPFF 332

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 303 LFRALASLHKQGIVHRDVKPGNFLFSC-KAVKGYLIDFNLA 342
           +F AL  LH QGI HRD+KP NFLFS  K+ +  L+DF L+
Sbjct: 177 IFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLS 217

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 540 LGNGKQKKDGPCAGTKGFRAPEVL-FRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG 594
           L NG+       AGT  F APEVL   ++  GPK D WSAGV L  L++G  PF G
Sbjct: 223 LNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPG 278

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKN 257
           PN E + +  E G G +G VY+A+ K  G + A K      S+  + + +  +E     +
Sbjct: 9   PN-EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK-SEEELEDYIVEIEILATCD 66
Query: 258 --FIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID--LSQLQWYGYC--LFRALASLH 311
             +I+K  G +        ++E       + +  E+D  L++ Q    C  +  AL  LH
Sbjct: 67  HPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH 126
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
            + I+HRD+K GN L + +     L DF ++         + +  GT Y
Sbjct: 127 SKRIIHRDLKAGNVLMTLEG-DIRLADFGVSAKNLKTLQKRDSFIGTPY 174

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 12  LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 71
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQ-----WYGYCLFRALAS 309
             N I++  G F        +LE+    R EV K+   LS+        Y   L  AL+ 
Sbjct: 72  HPN-ILRLYGYFHDATRVYLILEYA--PRGEVYKELQKLSKFDEQRTATYITELANALSY 128
Query: 310 LHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNG 366
            H + ++HRD+KP N L    A +  + DF  ++     S  + TL GT  Y+PP  + G
Sbjct: 129 CHSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRTTLCGTLDYLPPEMIEG 185
Query: 367 R 367
           R
Sbjct: 186 R 186

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKN 257
           PN E + +  E G G +G VY+A+ K  G + A K      S+  + + +  +E     +
Sbjct: 17  PN-EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK-SEEELEDYIVEIEILATCD 74
Query: 258 --FIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID--LSQLQWYGYC--LFRALASLH 311
             +I+K  G +        ++E       + +  E+D  L++ Q    C  +  AL  LH
Sbjct: 75  HPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH 134
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
            + I+HRD+K GN L + +     L DF ++         + +  GT Y
Sbjct: 135 SKRIIHRDLKAGNVLMTLEG-DIRLADFGVSAKNLKTLQKRDSFIGTPY 182

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 48/198 (24%)
Query: 515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGP----CAGTKGFRAPEVLFRSQHQG 570
           DL    I+LL K  P+P + +  +  G   + +DG       GT  F APE++   +  G
Sbjct: 140 DLKPENIMLLDKNIPIPHIKL--IDFGLAHEIEDGVEFKNIFGTPEFVAPEIV-NYEPLG 196
Query: 571 PKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLY 630
            + D+WS GV    L+ G +PF GD +Q                +A + +    F E+ +
Sbjct: 197 LEADMWSIGVITYILLSGASPFLGDTKQET--------------LANITSVSYDFDEEFF 242
Query: 631 AAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAP 690
           +  S       E  K                 D + K L    R R++ ++AL+H +  P
Sbjct: 243 SHTS-------ELAK-----------------DFIRKLLVKETRKRLTIQEALRHPWITP 278
Query: 691 CHEMLRKQKLLRQGSSID 708
                 +Q ++R+ S ++
Sbjct: 279 VD---NQQAMVRRESVVN 293

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 48/198 (24%)
Query: 515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGP----CAGTKGFRAPEVLFRSQHQG 570
           DL    I+LL K  P+P + +  +  G   + +DG       GT  F APE++   +  G
Sbjct: 140 DLKPENIMLLDKNIPIPHIKL--IDFGLAHEIEDGVEFKNIFGTPEFVAPEIV-NYEPLG 196
Query: 571 PKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLY 630
            + D+WS GV    L+ G +PF GD +Q                +A + +    F E+ +
Sbjct: 197 LEADMWSIGVITYILLSGASPFLGDTKQET--------------LANITSVSYDFDEEFF 242
Query: 631 AAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAP 690
           +  S       E  K                 D + K L    R R++ ++AL+H +  P
Sbjct: 243 SHTS-------ELAK-----------------DFIRKLLVKETRKRLTIQEALRHPWITP 278
Query: 691 CHEMLRKQKLLRQGSSID 708
                 +Q ++R+ S ++
Sbjct: 279 VD---NQQAMVRRESVVN 293

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 23/140 (16%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-----GDPEQNIKDIAKLRG 608
           T  +RAP+VL  S+     +DIWS G  +   M+  TP F      D    I  I     
Sbjct: 163 TLWYRAPDVLMGSKKYSTTIDIWSVG-CIFAEMVNGTPLFPGVSEADQLMRIFRILGTPN 221
Query: 609 SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC 668
           S++   V +L   + +F       + LP      W         FL+ +  S  DL+ K 
Sbjct: 222 SKNWPNVTELPKYDPNFT----VYEPLP------W-------ESFLKGLDESGIDLLSKM 264
Query: 669 LTVNPRLRISAEDALKHEFF 688
           L ++P  RI+A+ AL+H +F
Sbjct: 265 LKLDPNQRITAKQALEHAYF 284

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 23/140 (16%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-----GDPEQNIKDIAKLRG 608
           T  +RAP+VL  S+     +DIWS G  +   M+  TP F      D    I  I     
Sbjct: 163 TLWYRAPDVLMGSKKYSTTIDIWSVG-CIFAEMVNGTPLFPGVSEADQLMRIFRILGTPN 221
Query: 609 SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC 668
           S++   V +L   + +F       + LP      W         FL+ +  S  DL+ K 
Sbjct: 222 SKNWPNVTELPKYDPNFT----VYEPLP------W-------ESFLKGLDESGIDLLSKM 264
Query: 669 LTVNPRLRISAEDALKHEFF 688
           L ++P  RI+A+ AL+H +F
Sbjct: 265 LKLDPNQRITAKQALEHAYF 284

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 17/169 (10%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEG 264
           E G+G  G V + + +  G ++A K  H     A ++ +  EL++L       +I+ + G
Sbjct: 23  ELGAGNGGVVTKVQHRPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSP-YIVGFYG 81
Query: 265 CFKCGDSDCFVLEHVKHDR-PEVLK--KEIDLSQLQWYGYCLFRALASL-HKQGIVHRDV 320
            F         +EH+      +VLK  K I    L      + R LA L  K  I+HRDV
Sbjct: 82  AFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDV 141
Query: 321 KPGNFLFSCK--------AVKGYLID-FNLAMVGFDGSFNQATLPGTKY 360
           KP N L + +         V G LID    + VG         L GT Y
Sbjct: 142 KPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMAPERLQGTHY 190

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 48/198 (24%)
Query: 515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGP----CAGTKGFRAPEVLFRSQHQG 570
           DL    I+LL K  P+P + +  +  G   + +DG       GT  F APE++   +  G
Sbjct: 140 DLKPENIMLLDKNIPIPHIKL--IDFGLAHEIEDGVEFKNIFGTPEFVAPEIV-NYEPLG 196
Query: 571 PKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLY 630
            + D+WS GV    L+ G +PF GD +Q                +A +      F E+ +
Sbjct: 197 LEADMWSIGVITYILLSGASPFLGDTKQET--------------LANITAVSYDFDEEFF 242
Query: 631 AAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAP 690
           +  S       E  K                 D + K L    R R++ ++AL+H +  P
Sbjct: 243 SQTS-------ELAK-----------------DFIRKLLVKETRKRLTIQEALRHPWITP 278
Query: 691 CHEMLRKQKLLRQGSSID 708
                 +Q ++R+ S ++
Sbjct: 279 VD---NQQAMVRRESVVN 293

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 41/188 (21%)
Query: 502 AVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPC-AGTKGFRAP 560
           AVA    +N    DL     L LT     P+ +I + L    K  K      GT  + +P
Sbjct: 135 AVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSP 194
Query: 561 EVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHN 620
           +VL      GP+ D WSAGV +  L+ G  PF    +  +              + K+  
Sbjct: 195 QVL--EGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDXEV--------------MLKIRE 238
Query: 621 RESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAE 680
              +FPE                        D+L V P +   L+ + LT +P+ RI++ 
Sbjct: 239 GTFTFPEK-----------------------DWLNVSPQAE-SLIRRLLTKSPKQRITSL 274
Query: 681 DALKHEFF 688
            AL+HE+F
Sbjct: 275 QALEHEWF 282

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII 260
           + ++V+E  G G Y    R   K      A+K    + SK   S E+ +L R+G    II
Sbjct: 27  DGYVVKETIGVGSYSECKRCVHKATNMEYAVKV--IDKSKRDPSEEIEILLRYGQHPNII 84
Query: 261 KYEGCFKCGDSDCFVLEHVKHDR--PEVLKKEI-DLSQLQWYGYCLFRALASLHKQGIVH 317
             +  +  G     V E ++      ++L+++     +  +  + + + +  LH QG+VH
Sbjct: 85  TLKDVYDDGKHVYLVTELMRGGELLDKILRQKFFSEREASFVLHTIGKTVEYLHSQGVVH 144
Query: 318 RDVKPGNFLF 327
           RD+KP N L+
Sbjct: 145 RDLKPSNILY 154

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 41/188 (21%)
Query: 502 AVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPC-AGTKGFRAP 560
           AVA    +N    DL     L LT     P+ +I + L    K  K      GT  + +P
Sbjct: 118 AVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSP 177
Query: 561 EVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHN 620
           +VL      GP+ D WSAGV +  L+ G  PF    +  +              + K+  
Sbjct: 178 QVL--EGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDXEV--------------MLKIRE 221
Query: 621 RESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAE 680
              +FPE                        D+L V P +   L+ + LT +P+ RI++ 
Sbjct: 222 GTFTFPEK-----------------------DWLNVSPQAE-SLIRRLLTKSPKQRITSL 257
Query: 681 DALKHEFF 688
            AL+HE+F
Sbjct: 258 QALEHEWF 265

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 210 GSGGYGTV---YRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYE 263
           GSG  G V   Y A  + +  +  +  P  N   A + Y   EL +++    KN II   
Sbjct: 33  GSGAQGIVVAAYDAILERNVAIKKLSRPFQNQTHAKRAY--RELVLMKVVNHKN-IIGLL 89
Query: 264 GCFKCGDS-----DCF-VLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
             F    S     D + V+E +  +  +V++ E+D  ++ +  Y +   +  LH  GI+H
Sbjct: 90  NVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMSYLLYQMLVGIKHLHSAGIIH 149
Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLA 342
           RD+KP N +    A    ++DF LA
Sbjct: 150 RDLKPSNIVVKSDATLK-ILDFGLA 173

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 17/169 (10%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEG 264
           E G+G  G V++   K  G V+A K  H     A ++ +  EL++L       +I+ + G
Sbjct: 13  ELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSP-YIVGFYG 71
Query: 265 CFKCGDSDCFVLEHVKHDR-PEVLKK--EIDLSQLQWYGYCLFRALASL-HKQGIVHRDV 320
            F         +EH+      +VLKK   I    L      + + L  L  K  I+HRDV
Sbjct: 72  AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDV 131
Query: 321 KPGNFLFSCK--------AVKGYLID-FNLAMVGFDGSFNQATLPGTKY 360
           KP N L + +         V G LID    + VG     +   L GT Y
Sbjct: 132 KPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHY 180

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 48/198 (24%)
Query: 515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGP----CAGTKGFRAPEVLFRSQHQG 570
           DL    I+LL K  P+P + +  +  G   + +DG       GT  F APE++   +  G
Sbjct: 140 DLKPENIMLLDKNIPIPHIKL--IDFGLAHEIEDGVEFKNIFGTPEFVAPEIV-NYEPLG 196
Query: 571 PKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLY 630
            + D+WS GV    L+ G +PF GD +Q                +A +      F E+ +
Sbjct: 197 LEADMWSIGVITYILLSGASPFLGDTKQET--------------LANITAVSYDFDEEFF 242
Query: 631 AAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAP 690
           +  S       E  K                 D + K L    R R++ ++AL+H +  P
Sbjct: 243 SQTS-------ELAK-----------------DFIRKLLVKETRKRLTIQEALRHPWITP 278
Query: 691 CHEMLRKQKLLRQGSSID 708
                 +Q ++R+ S ++
Sbjct: 279 VD---NQQAMVRRESVVN 293

>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With Sb203580 Length = 362

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 555 KGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDLW 613
           + +RAPE++ + +     +D+WSAG  +  +   +  F G    N +  I ++ G+  + 
Sbjct: 197 RWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIE 256
Query: 614 EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNP 673
           +V       SS     Y   SL  +    W  ++          P +L DL+ K L  NP
Sbjct: 257 DVVMF----SSPSARDYLRNSLSNVPARAWTAVVPTAD------PVAL-DLIAKMLEFNP 305
Query: 674 RLRISAEDALKHEFF 688
           + RIS E AL+H +F
Sbjct: 306 QRRISTEQALRHPYF 320

>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs Resolution) Length = 362

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 555 KGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDLW 613
           + +RAPE++ + +     +D+WSAG  +  +   +  F G    N +  I ++ G+  + 
Sbjct: 197 RWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIE 256
Query: 614 EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNP 673
           +V       SS     Y   SL  +    W  ++          P +L DL+ K L  NP
Sbjct: 257 DVVMF----SSPSARDYLRNSLSNVPARAWTAVVPTAD------PVAL-DLIAKMLEFNP 305
Query: 674 RLRISAEDALKHEFF 688
           + RIS E AL+H +F
Sbjct: 306 QRRISTEQALRHPYF 320

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 48/198 (24%)
Query: 515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGP----CAGTKGFRAPEVLFRSQHQG 570
           DL    I+LL K  P+P + +  +  G   + +DG       GT  F APE++   +  G
Sbjct: 140 DLKPENIMLLDKNIPIPHIKL--IDFGLAHEIEDGVEFKNIFGTPEFVAPEIV-NYEPLG 196
Query: 571 PKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLY 630
            + D+WS GV    L+ G +PF GD +Q                +A +      F E+ +
Sbjct: 197 LEADMWSIGVITYILLSGASPFLGDTKQET--------------LANITAVSYDFDEEFF 242
Query: 631 AAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAP 690
           +  S       E  K                 D + K L    R R++ ++AL+H +  P
Sbjct: 243 SQTS-------ELAK-----------------DFIRKLLVKETRKRLTIQEALRHPWITP 278
Query: 691 CHEMLRKQKLLRQGSSID 708
                 +Q ++R+ S ++
Sbjct: 279 VDT---QQAMVRRESVVN 293

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 210 GSGGYGTV---YRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYE 263
           GSG  G V   Y A  + +  +  +  P  N   A + Y   EL +++    KN II   
Sbjct: 33  GSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAY--RELVLMKVVNHKN-IIGLL 89
Query: 264 GCFKCGDS-----DCF-VLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
             F    S     D + V+E +  +  +V++ E+D  ++ +  Y +   +  LH  GI+H
Sbjct: 90  NVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMSYLLYQMLVGIKHLHSAGIIH 149
Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLA 342
           RD+KP N +    A    ++DF LA
Sbjct: 150 RDLKPSNIVVKSDATLK-ILDFGLA 173

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCP--HANASKHYVSNELRMLERFGGKNFIIKYEGCFK 267
           G G  G V  A  ++ G +VA+K         +  + NE+ ++  +  +N +  Y   + 
Sbjct: 160 GEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY-NSYL 218
Query: 268 CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCL--FRALASLHKQGIVHRDVKPGNF 325
            GD    V+E ++      +     +++ Q    CL   +AL+ LH QG++HRD+K  + 
Sbjct: 219 VGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSI 278
Query: 326 LFS 328
           L +
Sbjct: 279 LLT 281

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 40/155 (25%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APE++ R  + GP++DIWS G+ ++ ++ G  P+F +P   +K +  +R    
Sbjct: 308 VGTPYWMAPELISRLPY-GPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRD--- 361
Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                                      NLP   K + K       +  SL   +D+ L  
Sbjct: 362 ---------------------------NLPPRLKNLHK-------VSPSLKGFLDRLLVR 387
Query: 672 NPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSS 706
           +P  R +A + LKH F A          L+RQ  +
Sbjct: 388 DPAQRATAAELLKHPFLAKAGPPASIVPLMRQNRT 422

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEG 264
           G G +G V  AR K +    A+K     A      + ++ +E  +L +     F++    
Sbjct: 47  GKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHF 106
Query: 265 CFKCGDSDCFVLEHVK------HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHR 318
            F+  D   FVL+++       H + E    E    + ++Y   +  AL  LH   IV+R
Sbjct: 107 SFQTADKLYFVLDYINGGELFYHLQRERCFLE---PRARFYAAEIASALGYLHSLNIVYR 163
Query: 319 DVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPPVNGRKVPSAKSL 375
           D+KP N L   +     L DF L     + +   +T  GT +Y+ P    K P  +++
Sbjct: 164 DLKPENILLDSQG-HIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTV 220

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCP--HANASKHYVSNELRMLERFGGKNFIIKYEGCFK 267
           G G  G V  A  ++ G +VA+K         +  + NE+ ++  +  +N +  Y   + 
Sbjct: 38  GEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY-NSYL 96
Query: 268 CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCL--FRALASLHKQGIVHRDVKPGNF 325
            GD    V+E ++      +     +++ Q    CL   +AL+ LH QG++HRD+K  + 
Sbjct: 97  VGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSI 156
Query: 326 LFS 328
           L +
Sbjct: 157 LLT 159

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 40/138 (28%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APE++ R  + GP++DIWS G+ ++ ++ G  P+F +P   +K +  +R    
Sbjct: 186 VGTPYWMAPELISRLPY-GPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRD--- 239
Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                                      NLP   K + K       +  SL   +D+ L  
Sbjct: 240 ---------------------------NLPPRLKNLHK-------VSPSLKGFLDRLLVR 265
Query: 672 NPRLRISAEDALKHEFFA 689
           +P  R +A + LKH F A
Sbjct: 266 DPAQRATAAELLKHPFLA 283

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII 260
           + ++V+E  G G Y    R   K      A+K    + SK   S E+ +L R+G    II
Sbjct: 27  DGYVVKETIGVGSYSECKRCVHKATNMEYAVKV--IDKSKRDPSEEIEILLRYGQHPNII 84
Query: 261 KYEGCFKCGDSDCFVLEHVKHDR--PEVLKKEI-DLSQLQWYGYCLFRALASLHKQGIVH 317
             +  +  G     V E ++      ++L+++     +  +  + + + +  LH QG+VH
Sbjct: 85  TLKDVYDDGKHVYLVTELMRGGELLDKILRQKFFSEREASFVLHTIGKTVEYLHSQGVVH 144
Query: 318 RDVKPGNFLF 327
           RD+KP N L+
Sbjct: 145 RDLKPSNILY 154

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCP--HANASKHYVSNELRMLERFGGKNFIIKYEGCFK 267
           G G  G V  A  ++ G +VA+K         +  + NE+ ++  +  +N +  Y   + 
Sbjct: 40  GEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY-NSYL 98
Query: 268 CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCL--FRALASLHKQGIVHRDVKPGNF 325
            GD    V+E ++      +     +++ Q    CL   +AL+ LH QG++HRD+K  + 
Sbjct: 99  VGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSI 158
Query: 326 LFS 328
           L +
Sbjct: 159 LLT 161

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 40/138 (28%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APE++ R  + GP++DIWS G+ ++ ++ G  P+F +P   +K +  +R    
Sbjct: 188 VGTPYWMAPELISRLPY-GPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRD--- 241
Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                                      NLP   K + K       +  SL   +D+ L  
Sbjct: 242 ---------------------------NLPPRLKNLHK-------VSPSLKGFLDRLLVR 267
Query: 672 NPRLRISAEDALKHEFFA 689
           +P  R +A + LKH F A
Sbjct: 268 DPAQRATAAELLKHPFLA 285

>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine Length = 273

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERFG-GKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 13  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 72
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 73  RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 127
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 128 NXGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 178

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCP--HANASKHYVSNELRMLERFGGKNFIIKYEGCFK 267
           G G  G V  A  ++ G +VA+K         +  + NE+ ++  +  +N +  Y   + 
Sbjct: 29  GEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY-NSYL 87
Query: 268 CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCL--FRALASLHKQGIVHRDVKPGNF 325
            GD    V+E ++      +     +++ Q    CL   +AL+ LH QG++HRD+K  + 
Sbjct: 88  VGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSI 147
Query: 326 LFS 328
           L +
Sbjct: 148 LLT 150

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 40/138 (28%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APE++ R  + GP++DIWS G+ ++ ++ G  P+F +P   +K +  +R    
Sbjct: 177 VGTPYWMAPELISRLPY-GPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIR---- 229
Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                                 +LPP            R   L  +  SL   +D+ L  
Sbjct: 230 ---------------------DNLPP------------RLKNLHKVSPSLKGFLDRLLVR 256
Query: 672 NPRLRISAEDALKHEFFA 689
           +P  R +A + LKH F A
Sbjct: 257 DPAQRATAAELLKHPFLA 274

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 41/138 (29%)
Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
            AGT  + APEV  R      K DIWSAGV + +L+ G  PF G   + ++         
Sbjct: 186 AAGTALYMAPEVFKRDV--TFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQ--------- 234
Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                     +++++ E  YA +  P                   + P ++ DL+ + LT
Sbjct: 235 ----------QKATYKEPNYAVECRP-------------------LTPQAV-DLLKQMLT 264
Query: 671 VNPRLRISAEDALKHEFF 688
            +P  R SA   L HE+F
Sbjct: 265 KDPERRPSAAQVLHHEWF 282

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF 592
           G+  + APEV+    + GP++D+WS G+ L  +++GR PF
Sbjct: 169 GSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPF 208

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 45/181 (24%)
Query: 515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGP----CAGTKGFRAPEVLFRSQHQG 570
           DL    I+LL K  P+P + +  +  G   + +DG       GT  F APE++   +  G
Sbjct: 140 DLKPENIMLLDKNIPIPHIKL--IDFGLAHEIEDGVEFKNIFGTPEFVAPEIV-NYEPLG 196
Query: 571 PKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLY 630
            + D+WS GV    L+ G +PF GD +Q                +A + +    F E+ +
Sbjct: 197 LEADMWSIGVITYILLSGASPFLGDTKQET--------------LANITSVSYDFDEEFF 242
Query: 631 AAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAP 690
           +  S       E  K                 D + K L    R R++ ++AL+H +  P
Sbjct: 243 SHTS-------ELAK-----------------DFIRKLLVKETRKRLTIQEALRHPWITP 278
Query: 691 C 691
Sbjct: 279 V 279

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Query: 210 GSGGYGTV---YRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYE 263
           GSG  G V   Y A  + +  +  +  P  N   A + Y   EL +++    KN II   
Sbjct: 33  GSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAY--RELVLMKVVNHKN-IIGLL 89
Query: 264 GCFKCGDS-----DCF-VLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
             F    S     D + V+E +  +  +V++ E+D  ++ +  Y +   +  LH  GI+H
Sbjct: 90  NVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMSYLLYQMLVGIKHLHSAGIIH 149
Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
           RD+KP N +    A    ++DF LA      SF       T+Y
Sbjct: 150 RDLKPSNIVVKSDATLK-ILDFGLARTA-GTSFMMTPYVVTRY 190

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 56/141 (39%), Gaps = 40/141 (28%)
Query: 545 QKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIA 604
           QKK     GT  + APEVL +   +  K D+WS GV L  L+ G  PF G  +Q I    
Sbjct: 192 QKKMKERLGTAYYIAPEVLRKKYDE--KCDVWSIGVILFILLAGYPPFGGQTDQEI---- 245
Query: 605 KLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL 664
            LR  E                      K     + PEW           + +     DL
Sbjct: 246 -LRKVE----------------------KGKYTFDSPEW-----------KNVSEGAKDL 271
Query: 665 VDKCLTVNPRLRISAEDALKH 685
           + + L  + + RISA+ AL+H
Sbjct: 272 IKQMLQFDSQRRISAQQALEH 292

>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain Length = 313

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 45  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 104
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 105 RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 159
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 160 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 210

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCP--HANASKHYVSNELRMLERFGGKNFIIKYEGCFK 267
           G G  G V  A  ++ G +VA+K         +  + NE+ ++  +  +N +  Y   + 
Sbjct: 33  GEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY-NSYL 91
Query: 268 CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCL--FRALASLHKQGIVHRDVKPGNF 325
            GD    V+E ++      +     +++ Q    CL   +AL+ LH QG++HRD+K  + 
Sbjct: 92  VGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSI 151
Query: 326 LFS 328
           L +
Sbjct: 152 LLT 154

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 40/138 (28%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APE++ R  + GP++DIWS G+ ++ ++ G  P+F +P   +K +  +R    
Sbjct: 181 VGTPYWMAPELISRLPY-GPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIR---- 233
Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                                 +LPP            R   L  +  SL   +D+ L  
Sbjct: 234 ---------------------DNLPP------------RLKNLHKVSPSLKGFLDRLLVR 260
Query: 672 NPRLRISAEDALKHEFFA 689
           +P  R +A + LKH F A
Sbjct: 261 DPAQRATAAELLKHPFLA 278

>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With 4-(4- Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One Length = 328

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 60  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 119
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 120 RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 174
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 175 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 225

>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Beta Carboline Ligand I Length = 314

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 46  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 105
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 106 RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 160
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 161 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 211

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 12  LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 71
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQ-----WYGYCLFRALAS 309
             N I++  G F        +LE+    R EV K+   LS+        Y   L  AL+ 
Sbjct: 72  HPN-ILRLYGYFHDATRVYLILEYA--PRGEVYKELQKLSKFDEQRTATYITELANALSY 128
Query: 310 LHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNG 366
            H + ++HRD+KP N L    A +  + DF  ++     S  +  L GT  Y+PP  + G
Sbjct: 129 CHSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRXXLXGTLDYLPPEMIEG 185
Query: 367 R 367
           R
Sbjct: 186 R 186

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 35/159 (22%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCG 269
           GSGG+G V++A+ + DG    IK    N  K     E++ L +    N I+ Y GC+   
Sbjct: 20  GSGGFGQVFKAKHRIDGKTYVIKRVKYNNEK--AEREVKALAKLDHVN-IVHYNGCWDGF 76
Query: 270 DSD--------------CFVL-----------EHVKHDRPEVLKKEIDLSQLQWYGYCLF 304
           D D              C  +           + ++  R E L K + L   +     + 
Sbjct: 77  DYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFE----QIT 132
Query: 305 RALASLHKQGIVHRDVKPGN-FLFSCKAVKGYLIDFNLA 342
           + +  +H + +++RD+KP N FL   K VK  + DF L 
Sbjct: 133 KGVDYIHSKKLINRDLKPSNIFLVDTKQVK--IGDFGLV 169

>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its Consensus Peptide Pimtide Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 45  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 104
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 105 RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 159
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 160 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 210

>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261 Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 45  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 104
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 105 RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 159
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 160 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 210

>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Pyrrolo[2,3- A]carbazole Ligand Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 46  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 105
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 106 RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 160
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 161 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 211

>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And The Jnk Inhibitor V Length = 314

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 46  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 105
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 106 RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 160
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 161 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 211

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-------GG 255
           F V    G GG+G VY  R+ + G + A+KC      K      L + ER        G 
Sbjct: 191 FSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGD 250
Query: 256 KNFIIKYEGCFKCGDSDCFVLE-------HVKHDRPEVLKKEIDLSQLQWYGYCLFRALA 308
             FI+     F   D   F+L+       H    +  V  +    + +++Y   +   L 
Sbjct: 251 CPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSE----ADMRFYAAEIILGLE 306
Query: 309 SLHKQGIVHRDVKPGNFLF 327
            +H + +V+RD+KP N L 
Sbjct: 307 HMHNRFVVYRDLKPANILL 325

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-------GG 255
           F V    G GG+G VY  R+ + G + A+KC      K      L + ER        G 
Sbjct: 191 FSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGD 250
Query: 256 KNFIIKYEGCFKCGDSDCFVLE-------HVKHDRPEVLKKEIDLSQLQWYGYCLFRALA 308
             FI+     F   D   F+L+       H    +  V  +    + +++Y   +   L 
Sbjct: 251 CPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSE----ADMRFYAAEIILGLE 306
Query: 309 SLHKQGIVHRDVKPGNFLF 327
            +H + +V+RD+KP N L 
Sbjct: 307 HMHNRFVVYRDLKPANILL 325

>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine Kinase (Pim1) In Complex With A Consensus Peptide And A Naphtho-Difuran Ligand Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 46  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 105
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 106 RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 160
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 161 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 211

>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As Potent, Highly Selective And Orally Bioavailable Pim Kinases Inhibitors Length = 294

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 18  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 77
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 78  RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 132
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 133 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 183

>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With Ly333531 Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 45  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 104
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 105 RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 159
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 160 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 210

>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As Potent Pim-1 Inhibitors Length = 299

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 18  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 77
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 78  RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 132
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 133 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 183

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-------GG 255
           F V    G GG+G VY  R+ + G + A+KC      K      L + ER        G 
Sbjct: 190 FSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGD 249
Query: 256 KNFIIKYEGCFKCGDSDCFVLE-------HVKHDRPEVLKKEIDLSQLQWYGYCLFRALA 308
             FI+     F   D   F+L+       H    +  V  +    + +++Y   +   L 
Sbjct: 250 CPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSE----ADMRFYAAEIILGLE 305
Query: 309 SLHKQGIVHRDVKPGNFLF 327
            +H + +V+RD+KP N L 
Sbjct: 306 HMHNRFVVYRDLKPANILL 324

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 16/154 (10%)
Query: 199 NFESFIVEEEEGSGGYGTVYRAR-RKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKN 257
           +++   VEE  G G +G V +A+ R  D   VAIK   + + +     ELR L R    N
Sbjct: 7   DYKEIEVEEVVGRGAFGVVCKAKWRAKD---VAIKQIESESERKAFIVELRQLSRVNHPN 63
Query: 258 FIIKYEGCFKCGDSDCFVLEHVKHDR-------PEVLKKEIDLSQLQWYGYCL--FRALA 308
            +  Y  C    +  C V+E+ +           E L        + W   C      L 
Sbjct: 64  IVKLYGACL---NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLH 120
Query: 309 SLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           S+  + ++HRD+KP N L         + DF  A
Sbjct: 121 SMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTA 154

>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa Length = 300

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 32  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 91
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 92  RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 146
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 147 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 197

>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With Inhibitor Length = 333

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 65  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 124
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 125 RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 179
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 180 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 230

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-------GG 255
           F V    G GG+G VY  R+ + G + A+KC      K      L + ER        G 
Sbjct: 191 FSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGD 250
Query: 256 KNFIIKYEGCFKCGDSDCFVLE-------HVKHDRPEVLKKEIDLSQLQWYGYCLFRALA 308
             FI+     F   D   F+L+       H    +  V  +    + +++Y   +   L 
Sbjct: 251 CPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSE----ADMRFYAAEIILGLE 306
Query: 309 SLHKQGIVHRDVKPGNFLF 327
            +H + +V+RD+KP N L 
Sbjct: 307 HMHNRFVVYRDLKPANILL 325

>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution Length = 300

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 32  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 91
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 92  RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 146
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 147 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 197

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCP--HANASKHYVSNELRMLERFGGKNFIIKYEGCFK 267
           G G  G V  A  ++ G +VA+K         +  + NE+ ++  +  +N +  Y   + 
Sbjct: 83  GEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY-NSYL 141
Query: 268 CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCL--FRALASLHKQGIVHRDVKPGNF 325
            GD    V+E ++      +     +++ Q    CL   +AL+ LH QG++HRD+K  + 
Sbjct: 142 VGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSI 201
Query: 326 LFS 328
           L +
Sbjct: 202 LLT 204

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 40/138 (28%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APE++ R  + GP++DIWS G+ ++ ++ G  P+F +P   +K +  +R    
Sbjct: 231 VGTPYWMAPELISRLPY-GPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRD--- 284
Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                                      NLP   K + K       +  SL   +D+ L  
Sbjct: 285 ---------------------------NLPPRLKNLHK-------VSPSLKGFLDRLLVR 310
Query: 672 NPRLRISAEDALKHEFFA 689
           +P  R +A + LKH F A
Sbjct: 311 DPAQRATAAELLKHPFLA 328

>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target Of Aberrant Somatic Hypermutations In Diffuse Large Cell Lymphoma Length = 293

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 17  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 76
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 77  RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 131
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 132 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 182

>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 33  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 92
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 93  RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 147
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 148 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 198

>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 33  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 92
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 93  RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 147
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 148 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 198

>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 33  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 92
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 93  RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 147
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 148 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 198

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 21/139 (15%)
Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRG---S 609
           T  +RAP+VL  S+     +DIWS G     ++ G   F G  E + +  I ++ G   S
Sbjct: 163 TLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGAPLFPGVSEADQLMRIFRILGTPNS 222
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
           ++   V +L   + +F       + LP      W         FL+ +  S  DL+ K L
Sbjct: 223 KNWPNVTELPKYDPNFT----VYEPLP------W-------ESFLKGLDESGIDLLSKML 265
Query: 670 TVNPRLRISAEDALKHEFF 688
            ++P  RI+A+ AL+H +F
Sbjct: 266 KLDPNQRITAKQALEHAYF 284

>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 60  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 119
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 120 RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 174
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 175 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 225

>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In Complex With A Novel Substituted Indole Inhibitor Length = 339

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 555 KGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF-FGDPEQNIKDIAKLRGSEDLW 613
           + +RAPEV+       P  D+WS G  L+   +G T F   D ++++  + ++ G     
Sbjct: 198 RHYRAPEVILALGWSQP-CDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKH 256
Query: 614 EVAKLHNRESSFPEDL-YAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            + K   R+    + L +   S     +   CK + +     +V    LFDL+ K L  +
Sbjct: 257 MIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYD 316
Query: 673 PRLRISAEDALKHEFF 688
           P  RI+  +ALKH FF
Sbjct: 317 PAKRITLREALKHPFF 332

>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of P27kip1 Carboxy-Terminal Peptide Length = 320

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 52  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 111
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 112 RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 166
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 167 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 217

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 16/154 (10%)
Query: 199 NFESFIVEEEEGSGGYGTVYRAR-RKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKN 257
           +++   VEE  G G +G V +A+ R  D   VAIK   + + +     ELR L R    N
Sbjct: 6   DYKEIEVEEVVGRGAFGVVCKAKWRAKD---VAIKQIESESERKAFIVELRQLSRVNHPN 62
Query: 258 FIIKYEGCFKCGDSDCFVLEHVKHDR-------PEVLKKEIDLSQLQWYGYCL--FRALA 308
            +  Y  C    +  C V+E+ +           E L        + W   C      L 
Sbjct: 63  IVKLYGACL---NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLH 119
Query: 309 SLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           S+  + ++HRD+KP N L         + DF  A
Sbjct: 120 SMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTA 153

>pdb|3RGF|A Chain A, Crystal Structure Of Human Cdk8CYCC Length = 405

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 21/152 (13%)
Query: 550 PCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR-------------TPFFGDP 596
           P   T  +RAPE+L  ++H    +DIW+ G     L+                 P+  D 
Sbjct: 194 PVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQ 253
Query: 597 EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEV 656
              I ++      +D WE  K     S+  +D +   +    +L ++ +    +PD    
Sbjct: 254 LDRIFNVMGFPADKD-WEDIKKMPEHSTLMKD-FRRNTYTNCSLIKYMEKHKVKPD---- 307
Query: 657 IPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
             S  F L+ K LT++P  RI++E A++  +F
Sbjct: 308 --SKAFHLLQKLLTMDPIKRITSEQAMQDPYF 337

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCF 266
           G+G +  V  A  K    +VAIKC    A    +  + NE+ +L +    N I+  +  +
Sbjct: 27  GTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHKIKHPN-IVALDDIY 85
Query: 267 KCGDSDCFVLEHVK----HDR--PEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDV 320
           + G     +++ V      DR   +    E D S+L    + +  A+  LH  GIVHRD+
Sbjct: 86  ESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLI---FQVLDAVKYLHDLGIVHRDL 142
Query: 321 KPGNFLFSC--KAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSL 375
           KP N L+    +  K  + DF L+ +   GS          YV P    + P +K++
Sbjct: 143 KPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAV 199

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCF 266
           G+G +  V  A  K    +VAIKC    A    +  + NE+ +L +    N I+  +  +
Sbjct: 27  GTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHKIKHPN-IVALDDIY 85
Query: 267 KCGDSDCFVLEHVK----HDR--PEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDV 320
           + G     +++ V      DR   +    E D S+L    + +  A+  LH  GIVHRD+
Sbjct: 86  ESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLI---FQVLDAVKYLHDLGIVHRDL 142
Query: 321 KPGNFLFSC--KAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSL 375
           KP N L+    +  K  + DF L+ +   GS          YV P    + P +K++
Sbjct: 143 KPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAV 199

>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small Molecule Inhibitor Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 18  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 77
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 78  RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 132
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 133 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 183

>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 6 (Mapk6) Length = 320

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIK---CPHANASKHYVSNELRMLERFGGKNFIIKYE--- 263
           G GG G V+ A   +    VAIK        + KH +  E++++ R    N +  +E   
Sbjct: 20  GCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHAL-REIKIIRRLDHDNIVKVFEILG 78
Query: 264 ----------GCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQ-LQWYGYCLFRALASLHK 312
                     G     +S   V E+++ D   VL++   L +  + + Y L R L  +H 
Sbjct: 79  PSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIHS 138
Query: 313 QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
             ++HRD+KP N   + + +   + DF LA +
Sbjct: 139 ANVLHRDLKPANLFINTEDLVLKIGDFGLARI 170

>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147 Length = 429

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 193 NAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK----HYVSNELR 248
           N KV  N+E   ++   G G YG VY A  KN    VAIK  +           +  E+ 
Sbjct: 23  NVKVPDNYE---IKHLIGRGSYGYVYLAYDKNANKNVAIKKVNRMFEDLIDCKRILREIT 79
Query: 249 MLERFGGKNFIIKYEGCFKCGDSDCF-----VLEHVKHDRPEVLKKEIDLSQ--LQWYGY 301
           +L R    ++II+        D   F     VLE    D  ++ K  I L++  ++   Y
Sbjct: 80  ILNRLKS-DYIIRLHDLIIPEDLLKFDELYIVLEIADSDLKKLFKTPIFLTEQHVKTILY 138
Query: 302 CLFRALASLHKQGIVHRDVKPGNFLFS--CKAVKGYLIDFNLA 342
            L      +H+ GI+HRD+KP N L +  C +VK  + DF LA
Sbjct: 139 NLLLGEKFIHESGIIHRDLKPANCLLNQDC-SVK--ICDFGLA 178

>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei, Pb000659.00.0 Length = 432

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK----HYVSNELRMLERFGGK 256
           +++I++   G G YG VY A  KN    VAIK  +           +  E+ +L R    
Sbjct: 26  DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSD 85
Query: 257 NFIIKYEGCFKCG----DSDCFVLEHVKHDRPEVLKKEIDLSQ--LQWYGYCLFRALASL 310
             I  Y+          D    VLE    D  ++ K  I L++  ++   Y L      +
Sbjct: 86  YIIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFI 145
Query: 311 HKQGIVHRDVKPGNFLFS--CKAVKGYLIDFNLA 342
           H+ GI+HRD+KP N L +  C +VK  + DF LA
Sbjct: 146 HESGIIHRDLKPANCLLNQDC-SVK--VCDFGLA 176

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCP--HANASKHYVSNELRMLERFGGKNFIIKYEGCFK 267
           G G  G V  A  K+ G  VA+K         +  + NE+ ++  +   N +  Y   + 
Sbjct: 54  GEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYSS-YL 112
Query: 268 CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCL--FRALASLHKQGIVHRDVKPGNF 325
            GD    V+E ++      +     +++ Q    CL   RAL+ LH QG++HRD+K  + 
Sbjct: 113 VGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSI 172
Query: 326 LFS 328
           L +
Sbjct: 173 LLT 175

>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546 Length = 308

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 40  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 99
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 100 RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 154
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 155 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 205

>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 16  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 75
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 76  RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 130
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 131 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 181

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCF 266
           G+G +  V  A  K    +VAIKC    A    +  + NE+ +L +    N I+  +  +
Sbjct: 27  GTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHKIKHPN-IVALDDIY 85
Query: 267 KCGDSDCFVLEHVK----HDR--PEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDV 320
           + G     +++ V      DR   +    E D S+L    + +  A+  LH  GIVHRD+
Sbjct: 86  ESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLI---FQVLDAVKYLHDLGIVHRDL 142
Query: 321 KPGNFLFSC--KAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSL 375
           KP N L+    +  K  + DF L+ +   GS          YV P    + P +K++
Sbjct: 143 KPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAV 199

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 17/169 (10%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEG 264
           E G+G  G V++   K  G V+A K  H     A ++ +  EL++L       +I+ + G
Sbjct: 32  ELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSP-YIVGFYG 90
Query: 265 CFKCGDSDCFVLEHVKHDR-PEVLKK--EIDLSQLQWYGYCLFRALASL-HKQGIVHRDV 320
            F         +EH+      +VLKK   I    L      + + L  L  K  I+HRDV
Sbjct: 91  AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDV 150
Query: 321 KPGNFLFSCK--------AVKGYLID-FNLAMVGFDGSFNQATLPGTKY 360
           KP N L + +         V G LID    + VG     +   L GT Y
Sbjct: 151 KPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHY 199

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 70/169 (41%), Gaps = 17/169 (10%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEG 264
           E G+G  G V++   K  G V+A K  H     A ++ +  EL++L       +I+ + G
Sbjct: 16  ELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSP-YIVGFYG 74
Query: 265 CFKCGDSDCFVLEHVKHDR-PEVLKK--EIDLSQLQWYGYCLFRALASL-HKQGIVHRDV 320
            F         +EH+      +VLKK   I    L      + + L  L  K  I+HRDV
Sbjct: 75  AFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDV 134
Query: 321 KPGNFLFSCK--------AVKGYLID-FNLAMVGFDGSFNQATLPGTKY 360
           KP N L + +         V G LID      VG     +   L GT Y
Sbjct: 135 KPSNILVNSRGEIKLCDFGVSGQLIDEMANEFVGTRSYMSPERLQGTHY 183

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCF 266
           G+G +  V  A  K    +VAIKC    A    +  + NE+ +L +    N I+  +  +
Sbjct: 27  GTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPN-IVALDDIY 85
Query: 267 KCGDSDCFVLEHVK----HDR--PEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDV 320
           + G     +++ V      DR   +    E D S+L    + +  A+  LH  GIVHRD+
Sbjct: 86  ESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLI---FQVLDAVKYLHDLGIVHRDL 142
Query: 321 KPGNFLFSC--KAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSL 375
           KP N L+    +  K  + DF L+ +   GS          YV P    + P +K++
Sbjct: 143 KPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAV 199

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 16/145 (11%)
Query: 210 GSGGYGTV---YRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYE 263
           GSG  G V   Y A  + +  +  +  P  N   A + Y   EL +++    KN II   
Sbjct: 33  GSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAY--RELVLMKVVNHKN-IIGLL 89
Query: 264 GCFKCGDS-----DCF-VLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
             F    S     D + V+E +  +  +V++ E+D  ++ +  Y +   +  LH  GI+H
Sbjct: 90  NVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIH 149
Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLA 342
           RD+KP N +    A    ++DF LA
Sbjct: 150 RDLKPSNIVVKSDATLK-ILDFGLA 173

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-----PHANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR KN   ++A+K            +H +  E+ +     
Sbjct: 7   LEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 66
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 67  HPN-ILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 124
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L    A +  + DF  ++     S  +A L GT  Y+PP  + GR
Sbjct: 125 HSKKVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRAALCGTLDYLPPEMIEGR 181

>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7- Azaindole Length = 273

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 13  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 72
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 73  RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 127
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 128 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 178

>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors Length = 273

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 13  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 72
Query: 261 KYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDL----SQLQ-----WYGYCLFRALASLH 311
           +    F+  DS   +LE     RPE ++   D       LQ      + + +  A+   H
Sbjct: 73  RLLDWFERPDSFVLILE-----RPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 127
Query: 312 KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 128 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 178

>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With Atp Length = 342

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 288 KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA--MVG 345
           KK ID  + + Y   +  A+ ++H+ GIVH D+KP NFL     +K  LIDF +A  M  
Sbjct: 149 KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLK--LIDFGIANQMQP 206
Query: 346 FDGSFNQATLPGT-KYVPPVNGRKVPSAK 373
              S  + +  GT  Y+PP   + + S++
Sbjct: 207 DTTSVVKDSQVGTVNYMPPEAIKDMSSSR 235

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH---YVS-----------NELRMLERF 253
           E G G +G VY+A+ K    + A K     + +    Y+            N +++L+ F
Sbjct: 44  ELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAF 103
Query: 254 GGKN-FIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHK 312
             +N   I  E C   G  D  +LE         L++ +  SQ+Q        AL  LH 
Sbjct: 104 YYENNLWILIEFC-AGGAVDAVMLE---------LERPLTESQIQVVCKQTLDALNYLHD 153
Query: 313 QGIVHRDVKPGNFLFS 328
             I+HRD+K GN LF+
Sbjct: 154 NKIIHRDLKAGNILFT 169

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 10/151 (6%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVA---IKCPHANASKHYVSNELRMLERFGGK 256
           ++ + + EE GSG +G V+R   K  G V     I  P+    K+ V NE+ ++ +    
Sbjct: 50  YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP-LDKYTVKNEISIMNQLHHP 108
Query: 257 NFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASLHK 312
             +I     F+       +LE +      DR      ++  +++  Y       L  +H+
Sbjct: 109 K-LINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHE 167
Query: 313 QGIVHRDVKPGNFLFSCKAVKGY-LIDFNLA 342
             IVH D+KP N +   K      +IDF LA
Sbjct: 168 HSIVHLDIKPENIMCETKKASSVKIIDFGLA 198

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH---YVS-----------NELRMLERF 253
           E G G +G VY+A+ K    + A K     + +    Y+            N +++L+ F
Sbjct: 44  ELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAF 103
Query: 254 GGKN-FIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHK 312
             +N   I  E C   G  D  +LE         L++ +  SQ+Q        AL  LH 
Sbjct: 104 YYENNLWILIEFC-AGGAVDAVMLE---------LERPLTESQIQVVCKQTLDALNYLHD 153
Query: 313 QGIVHRDVKPGNFLFS 328
             I+HRD+K GN LF+
Sbjct: 154 NKIIHRDLKAGNILFT 169

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 33  LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 92
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 93  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 150
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L    A +  + DF  ++     S  + TL GT  Y+PP  + GR
Sbjct: 151 HSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRTTLCGTLDYLPPEMIEGR 207

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH---YVS-----------NELRMLERF 253
           E G G +G VY+A+ K    + A K     + +    Y+            N +++L+ F
Sbjct: 44  ELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAF 103
Query: 254 GGKN-FIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHK 312
             +N   I  E C   G  D  +LE         L++ +  SQ+Q        AL  LH 
Sbjct: 104 YYENNLWILIEFC-AGGAVDAVMLE---------LERPLTESQIQVVCKQTLDALNYLHD 153
Query: 313 QGIVHRDVKPGNFLFS 328
             I+HRD+K GN LF+
Sbjct: 154 NKIIHRDLKAGNILFT 169

>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1 Catalytic Domain Apo Form Length = 390

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 288 KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA--MVG 345
           KK ID  + + Y   +  A+ ++H+ GIVH D+KP NFL     +K  LIDF +A  M  
Sbjct: 149 KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLK--LIDFGIANQMQP 206
Query: 346 FDGSFNQATLPGT-KYVPPVNGRKVPSAK 373
              S  + +  GT  Y+PP   + + S++
Sbjct: 207 DTTSVVKDSQVGTVNYMPPEAIKDMSSSR 235

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 539 LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ 598
           ++ +G+  +D    G+  + APEV+    + GP++DIWS GV L  L+ G  PF  D E 
Sbjct: 160 MMSDGEFLRDS--CGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPF--DDEH 215
Query: 599 NIKDIAKLRGS 609
                 K+RG 
Sbjct: 216 VPTLFKKIRGG 226

>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a Mutant In Complex With Sp600125 Inhibitor Length = 390

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 288 KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           KK ID  + + Y   +  A+ ++H+ GIVH D+KP NFL     +K  LIDF +A
Sbjct: 149 KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLK--LIDFGIA 201

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 546 KKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           K D  C G   + APE+    ++ GP++D+WS GV L  L+ G  PF G   QN+K++ +
Sbjct: 168 KLDAFC-GAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG---QNLKELRE 223
Query: 606 --LRG 608
             LRG
Sbjct: 224 RVLRG 228

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 546 KKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           K D  C G   + APE+    ++ GP++D+WS GV L  L+ G  PF G   QN+K++ +
Sbjct: 168 KLDAFC-GAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG---QNLKELRE 223
Query: 606 --LRG 608
             LRG
Sbjct: 224 RVLRG 228

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Query: 210 GSGGYGTV---YRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYE 263
           GSG  G V   Y A  + +  +  +  P  N   A + Y   EL +++    KN II   
Sbjct: 33  GSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHKN-IIGLL 89
Query: 264 GCFKCGDS-----DCF-VLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
             F    S     D + V+E +  +  +V++ E+D  ++ +  Y +   +  LH  GI+H
Sbjct: 90  NVFTPQKSLEEFQDVYIVMELMDANLSQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIH 149
Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
           RD+KP N +    A    ++DF LA      SF       T+Y
Sbjct: 150 RDLKPSNIVVKSDATLK-ILDFGLARTA-GTSFMMTPYVVTRY 190

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 17/163 (10%)
Query: 210 GSGGYGTV---YRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYE 263
           GSG  G V   Y A    +  +  +  P  N   A + Y   EL +++    KN II   
Sbjct: 33  GSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKXVNHKN-IISLL 89
Query: 264 GCFKCGDS-----DCF-VLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
             F    +     D + V+E +  +  +V++ E+D  ++ +  Y +   +  LH  GI+H
Sbjct: 90  NVFTPQKTLEEFQDVYLVMELMDANLXQVIQMELDHERMSYLLYQMLXGIKHLHSAGIIH 149
Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
           RD+KP N +         ++DF LA      SF       T+Y
Sbjct: 150 RDLKPSNIVVKSDXTLK-ILDFGLARTA-GTSFMMTPYVVTRY 190

>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (ttk) Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 288 KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA--MVG 345
           KK ID  + + Y   +  A+ ++H+ GIVH D+KP NFL     +K  LIDF +A  M  
Sbjct: 121 KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLK--LIDFGIANQMQP 178
Query: 346 FDGSFNQATLPGT-KYVPPVNGRKVPSAK 373
              S  + +  GT  Y+PP   + + S++
Sbjct: 179 DTTSVVKDSQVGTVNYMPPEAIKDMSSSR 207

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 546 KKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           K D  C G   + APE+    ++ GP++D+WS GV L  L+ G  PF G   QN+K++ +
Sbjct: 169 KLDAFC-GAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG---QNLKELRE 224
Query: 606 --LRG 608
             LRG
Sbjct: 225 RVLRG 229

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 546 KKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           K D  C G+  + APE+    ++ GP++D+WS GV L  L+ G  PF G   QN+K++ +
Sbjct: 168 KLDTFC-GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG---QNLKELRE 223
Query: 606 --LRG 608
             LRG
Sbjct: 224 RVLRG 228

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 546 KKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           K D  C G+  + APE+    ++ GP++D+WS GV L  L+ G  PF G   QN+K++ +
Sbjct: 168 KLDTFC-GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG---QNLKELRE 223
Query: 606 --LRG 608
             LRG
Sbjct: 224 RVLRG 228

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 546 KKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           K D  C G+  + APE+    ++ GP++D+WS GV L  L+ G  PF G   QN+K++ +
Sbjct: 168 KLDTFC-GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG---QNLKELRE 223
Query: 606 --LRG 608
             LRG
Sbjct: 224 RVLRG 228

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 546 KKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           K D  C G+  + APE+    ++ GP++D+WS GV L  L+ G  PF G   QN+K++ +
Sbjct: 169 KLDTFC-GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG---QNLKELRE 224
Query: 606 --LRG 608
             LRG
Sbjct: 225 RVLRG 229

>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain Length = 343

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 288 KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA--MVG 345
           KK ID  + + Y   +  A+ ++H+ GIVH D+KP NFL     +K  LIDF +A  M  
Sbjct: 102 KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLK--LIDFGIANQMQP 159
Query: 346 FDGSFNQATLPGT-KYVPPVNGRKVPSAK 373
              S  + +  GT  Y+PP   + + S++
Sbjct: 160 DTTSVVKDSQVGTVNYMPPEAIKDMSSSR 188

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 37/239 (15%)
Query: 164 AKEKKQGKRDQISRIMALKATGNHND--DQTNAKVLPNFESFIVEEEE-------GSGGY 214
           A  +KQG R   S  +++  T ++ +  D+ +   +P+   + ++ E        G G +
Sbjct: 347 ANNEKQGVR---SHTVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQF 403
Query: 215 GTVYRARR---KNDGTVVAIK----CPHANASKHYVSNELRMLERFGGKNFIIKYEGCFK 267
           G V++      +N    VAIK    C   +  + ++   L M  R      I+K  G   
Sbjct: 404 GDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTM--RQFDHPHIVKLIGVIT 461
Query: 268 CGDSDCFVLEHV-----KHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKP 322
             ++  +++  +          +V K  +DL+ L  Y Y L  ALA L  +  VHRD+  
Sbjct: 462 --ENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAA 519
Query: 323 GNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQAT---LPGTKYVPP--VNGRKVPSAKSL 375
            N L S    VK  L DF L+    D ++ +A+   LP  K++ P  +N R+  SA  +
Sbjct: 520 RNVLVSATDCVK--LGDFGLSRYMEDSTYYKASKGKLP-IKWMAPESINFRRFTSASDV 575

>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715 Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 288 KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA--MVG 345
           KK ID  + + Y   +  A+ ++H+ GIVH D+KP NFL     +K  LIDF +A  M  
Sbjct: 105 KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLK--LIDFGIANQMQP 162
Query: 346 FDGSFNQATLPGT-KYVPPVNGRKVPSAK 373
              S  + +  GT  Y+PP   + + S++
Sbjct: 163 DTTSVVKDSQVGTVNYMPPEAIKDMSSSR 191

>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1) Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 62/171 (36%), Gaps = 40/171 (23%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-------------------CPHANASKH 241
           +SF      G G YG V++ R K DG + A+K                     H    +H
Sbjct: 57  QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQH 116
Query: 242 YVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGY 301
                L      GG    I Y     CG S   + +H +            L + Q +GY
Sbjct: 117 PCCVRLEQAWEEGG----ILYLQTELCGPS---LQQHCE-------AWGASLPEAQVWGY 162
Query: 302 C--LFRALASLHKQGIVHRDVKPGNFLFS----CKAVK-GYLIDFNLAMVG 345
                 ALA LH QG+VH DVKP N        CK    G L++   A  G
Sbjct: 163 LRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAG 213

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 24  LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 83
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 84  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 141
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L    A +  + DF  ++     S  + TL GT  Y+PP  + GR
Sbjct: 142 HSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRTTLCGTLDYLPPEMIEGR 198

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD 595
            G+  + APEV+    + GP++DIWS+GV L  L+ G  PF  D
Sbjct: 176 CGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD 219

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 53/133 (39%), Gaps = 40/133 (30%)
Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APEVL +   +  K D+WS GV L  L+ G  PF G  +Q I            
Sbjct: 185 GTAYYIAPEVLRKKYDE--KCDVWSCGVILYILLCGYPPFGGQTDQEI------------ 230
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
             + ++   + SF             + P+W +           +      LV   LT  
Sbjct: 231 --LKRVEKGKFSF-------------DPPDWTQ-----------VSDEAKQLVKLMLTYE 264
Query: 673 PRLRISAEDALKH 685
           P  RISAE+AL H
Sbjct: 265 PSKRISAEEALNH 277

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 209 EGSGGYGTVYRARRKNDGT--VVAIKCPHANASKHYVS---NELRMLERFGGKNFIIKYE 263
           EG  G  ++Y     NDGT  +VA+K   A+A   + S    E+ +L     ++ IIKY+
Sbjct: 41  EGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEH-IIKYK 99
Query: 264 GCFKCGDSDC----FVLEHVKHD--RPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
           GC  C D+       V+E+V     R  + +  I L+QL  +   +   +A LH Q  +H
Sbjct: 100 GC--CEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIH 157
Query: 318 RDVKPGNFLF-SCKAVKGYLIDFNLA 342
           RD+   N L  + + VK  + DF LA
Sbjct: 158 RDLAARNVLLDNDRLVK--IGDFGLA 181

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGS 609
            G+  + APEV+    + GP++DIWS GV L  L+ G  PF  D E       K+RG 
Sbjct: 171 CGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPF--DDEHVPTLFKKIRGG 226

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 549 GPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           G   GT  F APEV+ R  +  P +D+W  GV L  L+ G  PF+G  E+  + I K
Sbjct: 193 GGRVGTPHFMAPEVVKREPYGKP-VDVWGCGVILFILLSGCLPFYGTKERLFEGIIK 248

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 53/133 (39%), Gaps = 40/133 (30%)
Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APEVL +   +  K D+WS GV L  L+ G  PF G  +Q I            
Sbjct: 168 GTAYYIAPEVLRKKYDE--KCDVWSCGVILYILLCGYPPFGGQTDQEI------------ 213
Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
             + ++   + SF             + P+W +           +      LV   LT  
Sbjct: 214 --LKRVEKGKFSF-------------DPPDWTQ-----------VSDEAKQLVKLMLTYE 247
Query: 673 PRLRISAEDALKH 685
           P  RISAE+AL H
Sbjct: 248 PSKRISAEEALNH 260

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 549 GPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           G   GT  F APEV+ R  +  P +D+W  GV L  L+ G  PF+G  E+  + I K
Sbjct: 191 GGRVGTPHFMAPEVVKREPYGKP-VDVWGCGVILFILLSGCLPFYGTKERLFEGIIK 246

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 549 GPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           G   GT  F APEV+ R  +  P +D+W  GV L  L+ G  PF+G  E+  + I K
Sbjct: 191 GGRVGTPHFMAPEVVKREPYGKP-VDVWGCGVILFILLSGCLPFYGTKERLFEGIIK 246

>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation Length = 293

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERF-GGKNFII 260
           GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++   G + +I
Sbjct: 17  GSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVI 76
Query: 261 KYEGCFKCGDSDCFVLEHVK--HDRPEVLKKEIDLSQ--LQWYGYCLFRALASLHKQGIV 316
           +    F+  DS   +LE ++   D  + + +   L +   + + + +  A+   H  G++
Sbjct: 77  RLLDWFERPDSFVLILERMEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVL 136
Query: 317 HRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
           HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 137 HRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTD--FDGTRVYSPP 182

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 546 KKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           K D  C G+  + APE+    ++ GP++D+WS GV L  L+ G  PF G   QN+K++ +
Sbjct: 161 KLDTFC-GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG---QNLKELRE 216
Query: 606 --LRG 608
             LRG
Sbjct: 217 RVLRG 221

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 546 KKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           K D  C G+  + APE+    ++ GP++D+WS GV L  L+ G  PF G   QN+K++ +
Sbjct: 166 KLDTFC-GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG---QNLKELRE 221
Query: 606 --LRG 608
             LRG
Sbjct: 222 RVLRG 226

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 546 KKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           K D  C G+  + APE+    ++ GP++D+WS GV L  L+ G  PF G   QN+K++ +
Sbjct: 168 KLDEFC-GSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG---QNLKELRE 223
Query: 606 --LRG 608
             LRG
Sbjct: 224 RVLRG 228

>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2- Yl)amino]benzamide Length = 320

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 288 KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA--MVG 345
           KK ID  + + Y   +  A+ ++H+ GIVH D+KP NFL     +K  LIDF +A  M  
Sbjct: 101 KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLK--LIDFGIANQMQP 158
Query: 346 FDGSFNQATLPGT-KYVPPVNGRKVPSAK 373
              S  + +  GT  Y+PP   + + S++
Sbjct: 159 DTTSVVKDSQVGTVNYMPPEAIKDMSSSR 187

>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (Ttk) In Complex With A Pyrimido-Diazepin Ligand Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 288 KKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           KK ID  + + Y   +  A+ ++H+ GIVH D+KP NFL     +K  LIDF +A
Sbjct: 121 KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLK--LIDFGIA 173

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII 260
           + + V+E+ G G Y    R   K      A+K    + SK   + E+ +L R+G    II
Sbjct: 22  DGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKI--IDKSKRDPTEEIEILLRYGQHPNII 79
Query: 261 KYEGCFKCGDSDCFVLEHVKHDR--PEVLKKEIDLSQLQWYG--YCLFRALASLHKQGIV 316
             +  +  G     V E +K      ++L+++   S+ +     + + + +  LH QG+V
Sbjct: 80  TLKDVYDDGKYVYVVTELMKGGELLDKILRQKF-FSEREASAVLFTITKTVEYLHAQGVV 138
Query: 317 HRDVKPGNFLF 327
           HRD+KP N L+
Sbjct: 139 HRDLKPSNILY 149

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 56/149 (37%), Gaps = 37/149 (24%)
Query: 550 PCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGS 609
           PC  T  F APEVL R Q      DIWS GV L  ++ G TPF   P+            
Sbjct: 180 PCY-TANFVAPEVLER-QGYDAACDIWSLGVLLYTMLTGYTPFANGPDDT---------- 227
Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
                           PE++ A       +L            +   +  +  DLV K L
Sbjct: 228 ----------------PEEILARIGSGKFSLS---------GGYWNSVSDTAKDLVSKML 262
Query: 670 TVNPRLRISAEDALKHEFFAPCHEMLRKQ 698
            V+P  R++A   L+H +     ++ + Q
Sbjct: 263 HVDPHQRLTAALVLRHPWIVHWDQLPQYQ 291

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 37/239 (15%)
Query: 164 AKEKKQGKRDQISRIMALKATGNHND--DQTNAKVLPNFESFIVEEEE-------GSGGY 214
           A  +KQG R   S  +++  T ++ +  D+ +   +P+   + ++ E        G G +
Sbjct: 347 ANNEKQGVR---SHTVSVSETDDYAEIIDEEDTYTMPSTRDYEIQRERIELGRCIGEGQF 403
Query: 215 GTVYRA---RRKNDGTVVAIK----CPHANASKHYVSNELRMLERFGGKNFIIKYEGCFK 267
           G V++      +N    VAIK    C   +  + ++   L M  R      I+K  G   
Sbjct: 404 GDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTM--RQFDHPHIVKLIGVIT 461
Query: 268 CGDSDCFVLEHV-----KHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKP 322
             ++  +++  +          +V K  +DL+ L  Y Y L  ALA L  +  VHRD+  
Sbjct: 462 --ENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAA 519
Query: 323 GNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQAT---LPGTKYVPP--VNGRKVPSAKSL 375
            N L S    VK  L DF L+    D ++ +A+   LP  K++ P  +N R+  SA  +
Sbjct: 520 RNVLVSSNDCVK--LGDFGLSRYMEDSTYYKASKGKLP-IKWMAPESINFRRFTSASDV 575

>pdb|4HNI|A Chain A, Crystal Structure Of Ck1e In Complex With Pf4800567 Length = 296

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCG 269
           GSG +G +Y       G  VAIK          +  E +  +   G   I   + C   G
Sbjct: 18  GSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWCGAEG 77
Query: 270 DSDCFVLEHVK---HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFL 326
           D +  V+E +     D      ++  L  +      +   +  +H +  +HRDVKP NFL
Sbjct: 78  DYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFL 137
Query: 327 FSC--KAVKGYLIDFNLA 342
                K    Y+IDF LA
Sbjct: 138 MGLGKKGNLVYIIDFGLA 155

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 72/180 (40%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 9   LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 68
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 69  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 126
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L       G L   N        S  + TL GT  Y+PP  + GR
Sbjct: 127 HSKRVIHRDIKPENLLLGS---AGELKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEGR 183

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLE---RFGGKNFIIKYEG 264
           E G G YG V + R    G ++A+K   A  +       L  L+   R     F + + G
Sbjct: 58  ELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYG 117
Query: 265 C-FKCGDSDCFVLEHVKHDRPEVLKKEIDLSQ------LQWYGYCLFRALASLH-KQGIV 316
             F+ GD     +E +     +  K+ ID  Q      L      + +AL  LH K  ++
Sbjct: 118 ALFREGDV-WICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVI 176
Query: 317 HRDVKPGNFLFS-------CK-AVKGYLID 338
           HRDVKP N L +       C   + GYL+D
Sbjct: 177 HRDVKPSNVLINALGQVKMCDFGISGYLVD 206

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 23/183 (12%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 8   LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 67
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 68  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 125
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG---SFNQATLPGT-KYVPP--V 364
           H + ++HRD+KP N L           +  +A  G+     S  + TL GT  Y+PP  +
Sbjct: 126 HSKRVIHRDIKPENLLLGSAG------ELKIADFGWSCHAPSSRRTTLSGTLDYLPPEMI 179
Query: 365 NGR 367
            GR
Sbjct: 180 EGR 182

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 12/164 (7%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFGGKNFIIKYEG 264
           G G Y  V   R K    + A++       + +    +V  E  + E+     F++    
Sbjct: 61  GRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHS 120
Query: 265 CFKCGDSDCFVLEHVKH-DRPEVLKKEIDLSQ--LQWYGYCLFRALASLHKQGIVHRDVK 321
           CF+      FV+E+V   D    ++++  L +   ++Y   +  AL  LH++GI++RD+K
Sbjct: 121 CFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLK 180
Query: 322 PGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
             N L   +  +K  L D+ +   G       +T  GT  Y+ P
Sbjct: 181 LDNVLLDSEGHIK--LTDYGMCKEGLRPGDTTSTFCGTPNYIAP 222

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 19/167 (11%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPH-----ANASKHYVSNELRMLERFGGKNFIIKYEG 264
           G G +G V   R K  G   A+K        A     +   E R+L+      F+   + 
Sbjct: 17  GKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN-TRHPFLTALKY 75
Query: 265 CFKCGDSDCFVLEHVKH-------DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
            F+  D  CFV+E+           R  V  +E    + ++YG  +  AL  LH + +V+
Sbjct: 76  AFQTHDRLCFVMEYANGGELFFHLSRERVFTEE----RARFYGAEIVSALEYLHSRDVVY 131
Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           RD+K  N +   K     + DF L   G        T  GT +Y+ P
Sbjct: 132 RDIKLENLMLD-KDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAP 177

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 19/167 (11%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPH-----ANASKHYVSNELRMLERFGGKNFIIKYEG 264
           G G +G V   R K  G   A+K        A     +   E R+L+      F+   + 
Sbjct: 14  GKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN-TRHPFLTALKY 72
Query: 265 CFKCGDSDCFVLEHVKH-------DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
            F+  D  CFV+E+           R  V  +E    + ++YG  +  AL  LH + +V+
Sbjct: 73  AFQTHDRLCFVMEYANGGELFFHLSRERVFTEE----RARFYGAEIVSALEYLHSRDVVY 128
Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           RD+K  N +   K     + DF L   G        T  GT +Y+ P
Sbjct: 129 RDIKLENLMLD-KDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAP 174

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 72/180 (40%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 10  LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 69
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 70  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 127
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L       G L   N        S  + TL GT  Y+PP  + GR
Sbjct: 128 HSKRVIHRDIKPENLLLGS---AGELKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEGR 184

>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant Length = 483

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH----YVSNELRMLERFGGKNF 258
           F +  + GSG +G +Y          VAIK  +   +KH    Y S   R+L+  GG   
Sbjct: 9   FRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVK-TKHPQLLYESKIYRILQ--GGTGI 65
Query: 259 I-IKYEGCFKCGDSDCFVLEHVK---HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQG 314
             +++ G    GD +  V++ +     D      +++ L  +      +   +  +H + 
Sbjct: 66  PNVRWFGV--EGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKS 123
Query: 315 IVHRDVKPGNFLFSC--KAVKGYLIDFNLAMVGFDGSFNQ 352
            +HRD+KP NFL     +A + Y+IDF LA    D S +Q
Sbjct: 124 FLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQ 163

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 10  LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 69
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 70  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 127
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L    A +  + DF  ++     S  + TL GT  Y+PP  + GR
Sbjct: 128 HSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRTTLCGTLDYLPPEMIEGR 184

>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp Length = 335

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF 592
           GT  + APEVL  + ++GP+L++WS GVTL  L+    PF
Sbjct: 191 GTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPF 230

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 19/167 (11%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPH-----ANASKHYVSNELRMLERFGGKNFIIKYEG 264
           G G +G V   R K  G   A+K        A     +   E R+L+      F+   + 
Sbjct: 14  GKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN-TRHPFLTALKY 72
Query: 265 CFKCGDSDCFVLEHVKH-------DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
            F+  D  CFV+E+           R  V  +E    + ++YG  +  AL  LH + +V+
Sbjct: 73  AFQTHDRLCFVMEYANGGELFFHLSRERVFTEE----RARFYGAEIVSALEYLHSRDVVY 128
Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           RD+K  N +   K     + DF L   G        T  GT +Y+ P
Sbjct: 129 RDIKLENLMLD-KDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAP 174

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 7   LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 66
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 67  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 124
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L    A +  + DF  ++     S  + TL GT  Y+PP  + GR
Sbjct: 125 HSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRTTLCGTLDYLPPEMIEGR 181

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 12  LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 71
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 72  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 129
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L    A +  + DF  ++     S  + TL GT  Y+PP  + GR
Sbjct: 130 HSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRTTLCGTLDYLPPEMIEGR 186

>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d) Length = 290

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 20/150 (13%)
Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLE---RFGGKNFIIKYEG 264
           E G G YG V + R    G ++A+K   A  +       L  L+   R     F + + G
Sbjct: 14  ELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYG 73
Query: 265 C-FKCGDSDCFVLEHVKHDRPEVLKKEIDLSQ------LQWYGYCLFRALASLH-KQGIV 316
             F+ GD     +E +     +  K+ ID  Q      L      + +AL  LH K  ++
Sbjct: 74  ALFREGDV-WICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVI 132
Query: 317 HRDVKPGNFLFS-------CK-AVKGYLID 338
           HRDVKP N L +       C   + GYL+D
Sbjct: 133 HRDVKPSNVLINALGQVKMCDFGISGYLVD 162

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 12  LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 71
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 72  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 129
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L    A +  + DF  ++     S  + TL GT  Y+PP  + GR
Sbjct: 130 HSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRTTLCGTLDYLPPEXIEGR 186

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 20/174 (11%)
Query: 202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIK------CPHANASKHYVSNELRMLERFGG 255
           +F +E++ G G +  VYRA    DG  VA+K         A A    +  E+ +L++   
Sbjct: 33  NFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCI-KEIDLLKQLNH 91
Query: 256 KNFIIKYEGCFKCGDSDCFVLE---------HVKHDRPEVLKKEIDLSQLQWYGYCLFRA 306
            N +IKY   F   +    VLE          +KH + +  K+ I    +  Y   L  A
Sbjct: 92  PN-VIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQ--KRLIPERTVWKYFVQLCSA 148
Query: 307 LASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
           L  +H + ++HRD+KP N   +   V   L D  L       +    +L GT Y
Sbjct: 149 LEHMHSRRVMHRDIKPANVFITATGVVK-LGDLGLGRFFSSKTTAAHSLVGTPY 201

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 6   LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 65
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 66  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 123
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L    A +  + DF  ++     S  + TL GT  Y+PP  + GR
Sbjct: 124 HSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRTTLCGTLDYLPPEMIEGR 180

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 65/148 (43%), Gaps = 20/148 (13%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKH--------YVSNELRMLERFGGKNFIIK 261
           G G + TV  AR        AIK       +H        YV+ E  ++ R     F +K
Sbjct: 46  GEGSFSTVVLARELATSREYAIKILE---KRHIIKENKVPYVTRERDVMSRLD-HPFFVK 101
Query: 262 YEGCFKCGDSDCFVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIV 316
              CF+  +   F L + K+   E+LK        D +  ++Y   +  AL  LH +GI+
Sbjct: 102 LYFCFQDDEKLYFGLSYAKNG--ELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGII 159
Query: 317 HRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
           HRD+KP N L + + +   + DF  A V
Sbjct: 160 HRDLKPENILLN-EDMHIQITDFGTAKV 186

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 48/172 (27%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCG 269
           GSGG+G V++A+ + DG    I+    N  K     E++ L +    N I+ Y GC+   
Sbjct: 21  GSGGFGQVFKAKHRIDGKTYVIRRVKYNNEK--AEREVKALAKLDHVN-IVHYNGCWDGF 77
Query: 270 DSD---------------------------CFVL-----------EHVKHDRPEVLKKEI 291
           D D                           C  +           + ++  R E L K +
Sbjct: 78  DYDPETSDDSLESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVL 137
Query: 292 DLSQLQWYGYCLFRALASLHKQGIVHRDVKPGN-FLFSCKAVKGYLIDFNLA 342
            L   +     + + +  +H + ++HRD+KP N FL   K VK  + DF L 
Sbjct: 138 ALELFEQ----ITKGVDYIHSKKLIHRDLKPSNIFLVDTKQVK--IGDFGLV 183

>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d Length = 296

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCG 269
           GSG +G +Y       G  VAIK          +  E ++ +   G   I     C   G
Sbjct: 18  GSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEG 77
Query: 270 DSDCFVLEHVK---HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFL 326
           D +  V+E +     D      ++  L  +      +   +  +H +  +HRDVKP NFL
Sbjct: 78  DYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFL 137
Query: 327 FSC--KAVKGYLIDFNLA 342
                K    Y+IDF LA
Sbjct: 138 MGLGKKGNLVYIIDFGLA 155

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 10  LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 69
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 70  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 127
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L    A +  + DF  ++     S  + TL GT  Y+PP  + GR
Sbjct: 128 HSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRTTLCGTLDYLPPEMIEGR 184

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII 260
           + + V+E+ G G Y    R   K      A+K    + SK   + E+ +L R+G    II
Sbjct: 22  DGYEVKEDIGVGSYSVCKRCIHKATNXEFAVKI--IDKSKRDPTEEIEILLRYGQHPNII 79
Query: 261 KYEGCFKCGDSDCFVLEHVKHDR--PEVLKKEIDLSQLQWYG--YCLFRALASLHKQGIV 316
             +  +  G     V E  K      ++L+++   S+ +     + + + +  LH QG+V
Sbjct: 80  TLKDVYDDGKYVYVVTELXKGGELLDKILRQKF-FSEREASAVLFTITKTVEYLHAQGVV 138
Query: 317 HRDVKPGNFLF 327
           HRD+KP N L+
Sbjct: 139 HRDLKPSNILY 149

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIK-CPHANASKHYVSNELRMLERFGGKNFIIKYEGCF-- 266
           G G +G V +AR   D    AIK   H       + +E+ +L     + ++++Y   +  
Sbjct: 15  GQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQ-YVVRYYAAWLE 73
Query: 267 ----------KCGDSDCFV-LEHVKHDRPEVLKKEIDLSQLQWYGYCLFR----ALASLH 311
                         S  F+ +E+ ++     L    +L+Q +   + LFR    AL+ +H
Sbjct: 74  RRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIH 133
Query: 312 KQGIVHRDVKPGN-FLFSCKAVKGYLIDFNLA 342
            QGI+HRD+KP N F+   + VK  + DF LA
Sbjct: 134 SQGIIHRDLKPMNIFIDESRNVK--IGDFGLA 163

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIK-CPHANASKHYVSNELRMLERFGGKNFIIKYEGCF-- 266
           G G +G V +AR   D    AIK   H       + +E+ +L     + ++++Y   +  
Sbjct: 15  GQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQ-YVVRYYAAWLE 73
Query: 267 ----------KCGDSDCFV-LEHVKHDRPEVLKKEIDLSQLQWYGYCLFR----ALASLH 311
                         S  F+ +E+ ++     L    +L+Q +   + LFR    AL+ +H
Sbjct: 74  RRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENLNQQRDEYWRLFRQILEALSYIH 133
Query: 312 KQGIVHRDVKPGN-FLFSCKAVKGYLIDFNLA 342
            QGI+HRD+KP N F+   + VK  + DF LA
Sbjct: 134 SQGIIHRDLKPMNIFIDESRNVK--IGDFGLA 163

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF 592
           +G++KKD    GT  + APEVL +  H   ++DIWS G  L  L++G+ PF
Sbjct: 195 DGERKKD--LCGTPNYIAPEVLCKKGHSF-EVDIWSLGCILYTLLVGKPPF 242

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 7   LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 66
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 67  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 124
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L    A +  + DF  ++     S  +A L GT  Y+PP  + GR
Sbjct: 125 HSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRAALCGTLDYLPPEMIEGR 181

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 11  LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 70
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 71  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 128
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L    A +  + DF  ++     S  + TL GT  Y+PP  + GR
Sbjct: 129 HSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRTTLCGTLDYLPPEMIEGR 185

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 17/163 (10%)
Query: 210 GSGGYGTV---YRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYE 263
           GSG  G V   Y A    +  +  +  P  N   A + Y   EL +++    KN II   
Sbjct: 33  GSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAY--RELVLMKCVNHKN-IISLL 89
Query: 264 GCFKCGDS-----DCF-VLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
             F    +     D + V+E +  +  +V++ E+D  ++ +  Y +   +  LH  GI+H
Sbjct: 90  NVFTPQKTLEEFQDVYLVMELMDANLXQVIQMELDHERMSYLLYQMLXGIKHLHSAGIIH 149
Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
           RD+KP N +         ++DF LA      SF       T+Y
Sbjct: 150 RDLKPSNIVVKSDXTLK-ILDFGLARTA-GTSFMMTPYVVTRY 190

>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing Residues 1-317 Complex With Bound Tungstate Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCG 269
           GSG +G +Y       G  VAIK          +  E ++ +   G   I     C   G
Sbjct: 16  GSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEG 75
Query: 270 DSDCFVLEHVK---HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFL 326
           D +  V+E +     D      ++  L  +      +   +  +H +  +HRDVKP NFL
Sbjct: 76  DYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFL 135
Query: 327 FSC--KAVKGYLIDFNLA 342
                K    Y+IDF LA
Sbjct: 136 MGLGKKGNLVYIIDFGLA 153

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF 592
           +G++KKD    GT  + APEVL +  H   ++DIWS G  L  L++G+ PF
Sbjct: 179 DGERKKD--LCGTPNYIAPEVLCKKGHSF-EVDIWSLGCILYTLLVGKPPF 226

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 10  LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 69
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 70  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 127
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L    A +  + DF  ++     S  +A L GT  Y+PP  + GR
Sbjct: 128 HSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRAALCGTLDYLPPEMIEGR 184

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCP-----HANASKHYVSNELRMLERFG 254
            E F +    G G +G VY AR K    ++A+K            +H +  E+ +     
Sbjct: 8   LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR 67
Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I++  G F        +LE+      +   + L K  D  +   Y   L  AL+  
Sbjct: 68  HPN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK-FDEQRTATYITELANALSYC 125
Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
           H + ++HRD+KP N L    A +  + DF  ++     S  + TL GT  Y+PP  + GR
Sbjct: 126 HSKRVIHRDIKPENLLLGS-AGELKIADFGWSVHA--PSSRRDTLCGTLDYLPPEMIEGR 182

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 274 FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK 333
            V+E +  +  +V++ E+D  ++ +  Y +   +  LH  GI+HRD+KP N +       
Sbjct: 99  LVMELMDANLXQVIQMELDHERMSYLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTL 158
Query: 334 GYLIDFNLAMVGFDGSFNQATLPGTKY 360
             ++DF LA      SF       T+Y
Sbjct: 159 K-ILDFGLARTA-GTSFMMTPYVVTRY 183

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	728
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	6e-23
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	5e-15
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	8e-22
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	4e-14
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	9e-22
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-13
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	6e-21
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	2e-14
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-20
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	6e-10
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-19
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-11
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	5e-19
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	5e-14
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	7e-19
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-06
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	8e-19
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-17
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	9e-19
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	9e-13
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	1e-18
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	9e-13
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-18
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-09
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-18
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	2e-14
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	4e-18
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	2e-07
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-18
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	3e-12
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	5e-18
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	7e-18
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	4e-10
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	8e-18
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	8e-15
3niz_A	311	Rhodanese family protein; structural genomics, str	1e-17
3niz_A	311	Rhodanese family protein; structural genomics, str	1e-12
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-17
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	2e-14
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-17
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	2e-13
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	1e-17
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	8e-12
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	1e-17
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	2e-12
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-17
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-13
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-17
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	1e-16
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-17
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-14
2a19_B	284	Interferon-induced, double-stranded RNA-activated	3e-17
2a19_B	284	Interferon-induced, double-stranded RNA-activated	7e-08
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-17
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	9e-15
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-17
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	4e-14
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	3e-17
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	7e-15
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	4e-17
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	3e-08
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	5e-17
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	6e-17
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	4e-09
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	7e-17
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-11
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	7e-17
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	4e-13
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	8e-17
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	3e-10
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	8e-17
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-08
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	8e-17
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-12
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	9e-17
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	6e-15
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	1e-16
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	2e-14
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-16
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	9e-15
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	1e-16
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	1e-16
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-14
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	1e-16
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-14
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-16
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	8e-15
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-16
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	6e-11
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-16
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-11
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-16
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-13
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	2e-16
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	7e-16
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	3e-16
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-07
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	3e-16
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	5e-10
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	3e-16
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	1e-11
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	4e-16
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	7e-15
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	4e-16
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-12
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	4e-16
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	7e-11
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	4e-16
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	3e-13
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	5e-16
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-08
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	5e-16
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	3e-10
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	6e-16
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	5e-11
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	6e-16
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-14
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	7e-16
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-14
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	7e-16
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	5e-15
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	7e-16
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	4e-12
3bhy_A	283	Death-associated protein kinase 3; death associate	8e-16
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-12
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	1e-15
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-13
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	1e-15
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	8e-10
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-15
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	3e-09
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	1e-15
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	4e-12
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-15
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-14
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-15
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	6e-15
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	3e-15
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	3e-14
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	3e-15
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	7e-13
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	3e-15
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	4e-09
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	5e-15
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	5e-13
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	5e-15
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	3e-10
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	5e-15
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	9e-15
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	6e-15
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-14
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	6e-15
3aln_A	327	Dual specificity mitogen-activated protein kinase;	7e-15
3aln_A	327	Dual specificity mitogen-activated protein kinase;	5e-07
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	7e-15
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	1e-13
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	7e-15
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-06
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	7e-15
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-09
3rp9_A	458	Mitogen-activated protein kinase; structural genom	8e-15
3rp9_A	458	Mitogen-activated protein kinase; structural genom	5e-12
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-14
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-06
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-14
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	5e-13
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-14
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	4e-05
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	1e-14
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	8e-12
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	2e-14
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	5e-10
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	2e-14
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	3e-10
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-14
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	4e-06
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-14
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	5e-11
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	3e-14
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-13
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	5e-14
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	6e-12
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	8e-14
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	8e-07
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	8e-14
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-13
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	9e-14
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	9e-12
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	1e-13
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	1e-06
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-13
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-08
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	2e-13
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	1e-04
3fme_A	290	Dual specificity mitogen-activated protein kinase;	3e-13
3fme_A	290	Dual specificity mitogen-activated protein kinase;	1e-07
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	3e-13
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-05
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	4e-13
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	4e-13
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	1e-11
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	5e-13
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-11
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	6e-13
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	6e-04
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	7e-13
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	6e-12
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-12
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-07
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	2e-12
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	3e-10
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-12
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	3e-07
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-12
3an0_A	340	Dual specificity mitogen-activated protein kinase;	8e-07
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	4e-12
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	5e-12
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	4e-12
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	6e-12
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	7e-08
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	7e-12
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	3e-10
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-11
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	2e-07
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-11
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-09
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	2e-11
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	2e-10
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-11
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	8e-09
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-11
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-07
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	2e-11
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	2e-09
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	3e-11
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	3e-09
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	4e-11
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	4e-09
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	5e-11
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	6e-11
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	6e-11
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	1e-10
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	7e-11
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	9e-11
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-09
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	9e-11
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-09
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	1e-10
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	5e-10
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	3e-10
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	9e-10
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	3e-10
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	3e-10
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	2e-05
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	4e-10
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	1e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	4e-10
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-05
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	5e-10
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-04
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	5e-10
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	5e-10
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	5e-10
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	4e-04
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	7e-10
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	7e-05
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	7e-10
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	3e-05
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	8e-10
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	9e-10
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	1e-09
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	9e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	1e-09
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	6e-06
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	1e-09
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	5e-05
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	1e-09
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	7e-04
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	2e-09
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	7e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	2e-09
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	6e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-09
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	4e-09
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	2e-09
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	8e-04
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	2e-09
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-09
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	6e-09
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	3e-09
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	9e-06
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	3e-09
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	2e-04
3soc_A	322	Activin receptor type-2A; structural genomics cons	4e-09
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	5e-09
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	7e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	6e-09
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	1e-04
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	6e-09
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	2e-08
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	7e-09
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	3e-04
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	1e-08
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	4e-04
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-08
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	1e-08
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	1e-08
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	3e-04
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-08
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-08
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	4e-04
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	3e-08
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	4e-08
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-08
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	7e-08
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	8e-08
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	7e-04
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	9e-08
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	3e-07
3uqc_A	286	Probable conserved transmembrane protein; structur	4e-07
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-07
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	6e-07
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	8e-04
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	7e-07
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	1e-06
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	1e-06
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-06
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-06
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	2e-06
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	3e-06
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	3e-06
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	5e-06
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	6e-06
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-05
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	2e-05
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	2e-05
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	3e-05
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	3e-05
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	4e-05
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	6e-05
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	1e-04
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-04
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-04
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	2e-04
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-04
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	3e-04
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	4e-04
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	4e-04

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 99.3 bits (248), Expect = 6e-23
 Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 13/186 (6%)

Query: 188 NDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC----PHANASKHYV 243
            ++     +      + + ++ GSGG   V++   +    + AIK        N +    
Sbjct: 15  TENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSY 73

Query: 244 SNELRMLERFGGKNF-IIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE--IDLSQLQWYG 300
            NE+  L +    +  II+             V+E    D    LKK+  ID  + + Y 
Sbjct: 74  RNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYW 133

Query: 301 YCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA--MVGFDGSFNQATLPGT 358
             +  A+ ++H+ GIVH D+KP NFL     +K  LIDF +A  M     S  + +  GT
Sbjct: 134 KNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLK--LIDFGIANQMQPDTTSVVKDSQVGT 191

Query: 359 -KYVPP 363
             Y+PP
Sbjct: 192 VNYMPP 197

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 31/148 (20%), Positives = 45/148 (30%), Gaps = 49/148 (33%)

Query: 553 GTKGFRAPEVLFRSQHQ----------GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKD 602
           GT  +  PE +                 PK D+WS G  L Y+  G+TPF     Q  K 
Sbjct: 190 GTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKL 249

Query: 603 IAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF 662
            A +  +                            I  P+                  L 
Sbjct: 250 HAIIDPNH--------------------------EIEFPDI-------------PEKDLQ 270

Query: 663 DLVDKCLTVNPRLRISAEDALKHEFFAP 690
           D++  CL  +P+ RIS  + L H +   
Sbjct: 271 DVLKCCLKRDPKQRISIPELLAHPYVQI 298

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 96.7 bits (241), Expect = 8e-22
 Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 13/181 (7%)

Query: 193 NAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC----PHANASKHYVSNELR 248
           N  +      + + ++ GSGG   V++   +    + AIK        N +     NE+ 
Sbjct: 1   NECISVKGRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIA 59

Query: 249 MLERFGGKNF-IIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE--IDLSQLQWYGYCLFR 305
            L +    +  II+             V+E    D    LKK+  ID  + + Y   +  
Sbjct: 60  YLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLE 119

Query: 306 ALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA--MVGFDGSFNQATLPGT-KYVP 362
           A+ ++H+ GIVH D+KP NFL     +K  LIDF +A  M     S  + +  GT  Y+P
Sbjct: 120 AVHTIHQHGIVHSDLKPANFLIVDGMLK--LIDFGIANQMQPDTTSVVKDSQVGTVNYMP 177

Query: 363 P 363
           P
Sbjct: 178 P 178

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 73.6 bits (181), Expect = 4e-14
 Identities = 31/151 (20%), Positives = 45/151 (29%), Gaps = 49/151 (32%)

Query: 553 GTKGFRAPEVLFRSQHQ----------GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKD 602
           GT  +  PE +                 PK D+WS G  L Y+  G+TPF     Q  K 
Sbjct: 171 GTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKL 230

Query: 603 IAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF 662
            A +  +                            I  P+                  L 
Sbjct: 231 HAIIDPNH--------------------------EIEFPDI-------------PEKDLQ 251

Query: 663 DLVDKCLTVNPRLRISAEDALKHEFFAPCHE 693
           D++  CL  +P+ RIS  + L H +      
Sbjct: 252 DVLKCCLKRDPKQRISIPELLAHPYVQIQTH 282

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 97.2 bits (242), Expect = 9e-22
 Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 13/216 (6%)

Query: 158 HNKAFDAKEKKQGKRDQISRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTV 217
                      + +R  +          +      N  +      + + ++ GSGG   V
Sbjct: 13  RGSGMKETAAAKFERQHMDSPDLGTDDDDKASSSANECISVKGRIYSILKQIGSGGSSKV 72

Query: 218 YRARRKNDGTVVAIKC----PHANASKHYVSNELRMLERFGGKNF-IIKYEGCFKCGDSD 272
           ++   +    + AIK        N +     NE+  L +    +  II+           
Sbjct: 73  FQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYI 131

Query: 273 CFVLEHVKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK 330
             V+E    D    LKK+  ID  + + Y   +  A+ ++H+ GIVH D+KP NFL    
Sbjct: 132 YMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDG 191

Query: 331 AVKGYLIDFNLA--MVGFDGSFNQATLPGT-KYVPP 363
            +K  LIDF +A  M     S  + +  G   Y+PP
Sbjct: 192 MLK--LIDFGIANQMQPDTTSVVKDSQVGAVNYMPP 225

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 30/153 (19%), Positives = 44/153 (28%), Gaps = 49/153 (32%)

Query: 551 CAGTKGFRAPEVLFRSQHQ----------GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNI 600
             G   +  PE +                 PK D+WS G  L Y+  G+TPF     Q  
Sbjct: 216 QVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS 275

Query: 601 KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS 660
           K  A +  +                            I  P+                  
Sbjct: 276 KLHAIIDPNH--------------------------EIEFPDI-------------PEKD 296

Query: 661 LFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE 693
           L D++  CL  +P+ RIS  + L H +      
Sbjct: 297 LQDVLKCCLKRDPKQRISIPELLAHPYVQIQTH 329

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 93.5 bits (233), Expect = 6e-21
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 8/139 (5%)

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRGSEDLWE 614
           F+ PE+L   Q     LD+WS G  L  ++  + PFF G    + +  IAK+ G+EDL++
Sbjct: 196 FKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYD 255

Query: 615 VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR 674
               +N E     D      L   +   W + +      L V P +L D +DK L  + +
Sbjct: 256 YIDKYNIEL----DPRFNDILGRHSRKRWERFVHSENQHL-VSPEAL-DFLDKLLRYDHQ 309

Query: 675 LRISAEDALKHEFFAPCHE 693
            R++A +A++H +F    +
Sbjct: 310 SRLTAREAMEHPYFYTVVK 328

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-GGKNFIIKYEGCFKC 268
           G G Y  V+ A    +   V +K       K     E+++LE   GG N II      K 
Sbjct: 45  GRGKYSEVFEAINITNNEKVVVKILKPVKKKKIK-REIKILENLRGGPN-IITLADIVKD 102

Query: 269 GDS--DCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFL 326
             S     V EHV +   + L + +    +++Y Y + +AL   H  GI+HRDVKP N +
Sbjct: 103 PVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM 162

Query: 327 FSCKAVKGYLIDFNLA 342
              +  K  LID+ LA
Sbjct: 163 IDHEHRKLRLIDWGLA 178

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 90.8 bits (226), Expect = 4e-20
 Identities = 51/232 (21%), Positives = 79/232 (34%), Gaps = 16/232 (6%)

Query: 141 LHKDGIDPKGPKLQASRHNKAFDAKEKKQGKRDQISRIMALKATGNHNDDQTNAKVLPNF 200
           +H       G  L     N  F +  + Q +R       +        D           
Sbjct: 1   MHHHHHHSSGVDL--GTENLYFQSMHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQ-- 56

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-CPHANASKHYVS---NELRMLERFGGK 256
           +SF      G G YG V++ R K DG + A+K            +    E+   E+ G  
Sbjct: 57  QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQH 116

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQ 313
              ++ E  ++ G       E       +  +     +  +Q+  Y      ALA LH Q
Sbjct: 117 PCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQ 176

Query: 314 GIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           G+VH DVKP N     +   K  L DF L +        +    G  +Y+ P
Sbjct: 177 GLVHLDVKPANIFLGPRGRCK--LGDFGLLVELGTAGAGE-VQEGDPRYMAP 225

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 45/136 (33%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           G   + APE+L +  + G   D++S G+T+L +               +   +LR     
Sbjct: 218 GDPRYMAPELL-QGSY-GTAADVFSLGLTILEVACNMELPH-----GGEGWQQLR----- 265

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
                                 LPP              +F   + S L  ++   L  +
Sbjct: 266 -------------------QGYLPP--------------EFTAGLSSELRSVLVMMLEPD 292

Query: 673 PRLRISAEDALKHEFF 688
           P+LR +AE  L     
Sbjct: 293 PKLRATAEALLALPVL 308

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 88.8 bits (221), Expect = 2e-19
 Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 18/136 (13%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRG--SEDLW 613
           RAP+VL  S+     +DIWS G  +L  MI   P F G  ++  +K I  + G  +E LW
Sbjct: 175 RAPDVLMGSRTYSTSIDIWSCG-CILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLW 233

Query: 614 -EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
             V KL     +  +        PP +L +  +  TK P     +  +L D +   L +N
Sbjct: 234 PSVTKLPKYNPNIQQR-------PPRDLRQVLQPHTKEP-----LDGNLMDFLHGLLQLN 281

Query: 673 PRLRISAEDALKHEFF 688
           P +R+SA+ AL H +F
Sbjct: 282 PDMRLSAKQALHHPWF 297

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 64.9 bits (159), Expect = 2e-11
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 15/154 (9%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELR---MLERFGGKN 257
             F   E+ G+G Y TVY+   K  G  VA+K    ++ +   S  +R   +++    +N
Sbjct: 5   SQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHEN 64

Query: 258 FIIKYEGCFKCGDSDCFVLEHVKHD--------RPEVLKKEIDLSQLQWYGYCLFRALAS 309
            I++        +    V E + +D              + ++L+ ++++ + L + LA 
Sbjct: 65  -IVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAF 123

Query: 310 LHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
            H+  I+HRD+KP N L + +  +K  L DF LA
Sbjct: 124 CHENKILHRDLKPQNLLINKRGQLK--LGDFGLA 155

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 72.2 bits (178), Expect = 5e-14
 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 12/151 (7%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E+F   E+ G G YG VY+AR K  G VVA+K    +     V +    E+ +L+     
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLK----KEIDLSQLQWYGYCLFRALASLHK 312
           N I+K        +    V E +  D  + +       I L  ++ Y + L + LA  H 
Sbjct: 63  N-IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 121

Query: 313 QGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             ++HRD+KP N L + + A+K  L DF LA
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIK--LADFGLA 150

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 88.1 bits (218), Expect = 7e-19
 Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 27/190 (14%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPH-ANASKHYVSNELRMLERFG 254
           +   V    G G +  VY A + +     +     +K    AN  + Y+  +L    +  
Sbjct: 65  KLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPS 124

Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVKH--------DRPEVLKKEIDLSQLQWYGYCLFRA 306
            ++  +K+       +    V E   +              +K +    +  +   +   
Sbjct: 125 MQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYM 184

Query: 307 LASLHKQGIVHRDVKPGNFLFSCKAVKGY----------LIDFNLA--MVGFDGSFNQAT 354
           +  +H   I+H D+KP NF+     ++            LID   +  M  F        
Sbjct: 185 IEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTA 244

Query: 355 LPGT-KYVPP 363
              T  +   
Sbjct: 245 KCETSGFQCV 254

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 18/153 (11%), Positives = 35/153 (22%), Gaps = 52/153 (33%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRG--SE 610
            T GF+  E+L        ++D +    T+  ++ G      +     K     R     
Sbjct: 247 ETSGFQCVEMLSNKPW-NYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGLFRRLPHL 305

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
           D+W                                                 +     L 
Sbjct: 306 DMWN------------------------------------------------EFFHVMLN 317

Query: 671 VNPRLRISAEDALKHEFFA-PCHEMLRKQKLLR 702
           +     + + D L+ +           K + LR
Sbjct: 318 IPDCHHLPSLDLLRQKLKKVFQQHYTNKIRALR 350

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 88.7 bits (220), Expect = 8e-19
 Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 18/195 (9%)

Query: 182 KATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH 241
               +  D++T+  ++     F  ++  G G  GT+   R   D   VA+K         
Sbjct: 6   SLEQDDGDEETSVVIVGKIS-FCPKDVLGHGAEGTIVY-RGMFDNRDVAVKRILPECFSF 63

Query: 242 YVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK---HDRPEVLKKEIDLSQLQW 298
               E+++L        +I+Y    K        +E       +   V +K+     L+ 
Sbjct: 64  -ADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCAATLQEY--VEQKDFAHLGLEP 120

Query: 299 YGYC--LFRALASLHKQGIVHRDVKPGNFLFSCK----AVKGYLIDFNLA--MVGFDGSF 350
                     LA LH   IVHRD+KP N L S       +K  + DF L   +     SF
Sbjct: 121 ITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSF 180

Query: 351 NQ-ATLPGTK-YVPP 363
           ++ + +PGT+ ++ P
Sbjct: 181 SRRSGVPGTEGWIAP 195

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 83.7 bits (207), Expect = 3e-17
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 40/158 (25%)

Query: 541 GNGKQKKDGPCAGTKGFRAPEVLFRSQHQ--GPKLDIWSAGVTLLYLMIGRTPFFGDPEQ 598
           G     +     GT+G+ APE+L     +     +DI+SAG    Y++   +  FG   Q
Sbjct: 176 GRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ 235

Query: 599 NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP 658
              +I     S D                +   A+                         
Sbjct: 236 RQANILLGACSLDC---------LHPEKHEDVIAR------------------------- 261

Query: 659 SSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLR 696
               +L++K + ++P+ R SA+  LKH FF    + L+
Sbjct: 262 ----ELIEKMIAMDPQKRPSAKHVLKHPFFWSLEKQLQ 295

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 86.4 bits (215), Expect = 9e-19
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 23/136 (16%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRG--SEDLW 613
           RAP+VL  S+     +DIWS G  +   M+  TP F G  E + +  I ++ G  +   W
Sbjct: 167 RAPDVLMGSKKYSTTIDIWSVG-CIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNW 225

Query: 614 -EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
             V +L   + +F           P+    + K +            S  DL+ K L ++
Sbjct: 226 PNVTELPKYDPNFTV-------YEPLPWESFLKGLD----------ESGIDLLSKMLKLD 268

Query: 673 PRLRISAEDALKHEFF 688
           P  RI+A+ AL+H +F
Sbjct: 269 PNQRITAKQALEHAYF 284

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 68.3 bits (168), Expect = 9e-13
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 12/150 (8%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E +   E+ G G YG VY+A+    G   A+K          + +    E+ +L+     
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNY-GETFALKKIRLEKEDEGIPSTTIREISILKELKHS 60

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQ 313
           N I+K             V EH+  D  ++L      ++    + +   L   +A  H +
Sbjct: 61  N-IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR 119

Query: 314 GIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
            ++HRD+KP N L + +  +K  + DF LA
Sbjct: 120 RVLHRDLKPQNLLINREGELK--IADFGLA 147

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 86.9 bits (216), Expect = 1e-18
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 22/136 (16%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRG--SEDLW 613
           R PE+L  S+H    +DIWS    +   M+ +TP F GD E + +  I ++ G   +  W
Sbjct: 204 RPPEILLGSRHYSTSVDIWSIA-CIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTW 262

Query: 614 -EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
             V  L + + SFP             L               ++     DL+   L ++
Sbjct: 263 PGVTALPDWKQSFP-------KFRGKTLKR---------VLGALLDDEGLDLLTAMLEMD 306

Query: 673 PRLRISAEDALKHEFF 688
           P  RISA++AL+H +F
Sbjct: 307 PVKRISAKNALEHPYF 322

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 69.2 bits (170), Expect = 9e-13
 Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 19/156 (12%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           + +    + G G YG VY+A        VAIK       +  V      E+ +L+    +
Sbjct: 34  DRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHR 93

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID------LSQLQWYGYCLFRALASL 310
           N II+ +           + E+ ++D    LKK +D      +  ++ + Y L   +   
Sbjct: 94  N-IIELKSVIHHNHRLHLIFEYAEND----LKKYMDKNPDVSMRVIKSFLYQLINGVNFC 148

Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGY----LIDFNLA 342
           H +  +HRD+KP N L S           + DF LA
Sbjct: 149 HSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLA 184

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 87.1 bits (216), Expect = 1e-18
 Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 15/187 (8%)

Query: 185 GNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-CPHANAS---K 240
            +  D  T      + E ++  ++ G G +G     +   DG    IK    +  S   +
Sbjct: 8   SSGVDLGTENLYFQSMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKER 67

Query: 241 HYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH-DRPEVLKKE----IDLSQ 295
                E+ +L      N I++Y   F+   S   V+++ +  D  + +  +        Q
Sbjct: 68  EESRREVAVLANMKHPN-IVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQ 126

Query: 296 LQWYGYCLFRALASLHKQGIVHRDVKPGN-FLFSCKAVKGYLIDFNLAMVGFDGSFNQA- 353
           +  +   +  AL  +H + I+HRD+K  N FL     V+  L DF +A V  + +   A 
Sbjct: 127 ILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQ--LGDFGIARV-LNSTVELAR 183

Query: 354 TLPGTKY 360
              GT Y
Sbjct: 184 ACIGTPY 190

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 33/174 (18%), Positives = 51/174 (29%), Gaps = 44/174 (25%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGS 609
           C GT  + +PE+     +   K DIW+ G  L  L   +  F     +  +  I      
Sbjct: 185 CIGTPYYLSPEICENKPY-NNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIIS---- 239

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
                                   S PP++                     L  LV +  
Sbjct: 240 -----------------------GSFPPVS---------------LHYSYDLRSLVSQLF 261

Query: 670 TVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTTGNPSHKQCSARP 723
             NPR R S    L+  F A   E     +L+ +   +   +   S    + RP
Sbjct: 262 KRNPRDRPSVNSILEKGFIAKRIEKFLSPQLIAEEFCLKTFSKFGSQPIPAKRP 315

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 84.5 bits (210), Expect = 3e-18
 Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 47/192 (24%)

Query: 521 ILLLTKLHPVPVLII-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWS 577
           +LL +K     V +  F L   + + +       AGT G+ +PEVL +  +    +DIW+
Sbjct: 136 LLLASKAKGAAVKLADFGLAIEVNDSEAWHG--FAGTPGYLSPEVLKKDPY-SKPVDIWA 192

Query: 578 AGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPP 637
            GV L  L++G  PF+ + +  +       G+ D             +P           
Sbjct: 193 CGVILYILLVGYPPFWDEDQHRLYA-QIKAGAYD-------------YPS---------- 228

Query: 638 INLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRK 697
              PEW             +      L+D  LTVNP+ RI+A+ ALK  +        R 
Sbjct: 229 ---PEWDT-----------VTPEAKSLIDSMLTVNPKKRITADQALKVPWIC---NRERV 271

Query: 698 QKLLRQGSSIDN 709
              + +  ++D 
Sbjct: 272 ASAIHRQDTVDC 283

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 73.7 bits (182), Expect = 2e-14
 Identities = 46/182 (25%), Positives = 71/182 (39%), Gaps = 30/182 (16%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC----PHANASKHYVSNELRMLERFGGK 256
           +++ V+EE G G +  V R   K  G   A K       +      +  E R+  +    
Sbjct: 6   DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHP 65

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EIDLSQL--QWYGYCLFRA 306
           N I++     +       V + V      +   ++ +    E D S    Q     +  +
Sbjct: 66  N-IVRLHDSIQEESFHYLVFDLVTGGELFED--IVAREFYSEADASHCIQQ-----ILES 117

Query: 307 LASLHKQGIVHRDVKPGNFLFSCK----AVKGYLIDFNLAMVGFDGSFNQATLPGT-KYV 361
           +A  H  GIVHR++KP N L + K    AVK  L DF LA+   D         GT  Y+
Sbjct: 118 IAYCHSNGIVHRNLKPENLLLASKAKGAAVK--LADFGLAIEVNDSEAWH-GFAGTPGYL 174

Query: 362 PP 363
            P
Sbjct: 175 SP 176

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 85.1 bits (211), Expect = 4e-18
 Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 18/174 (10%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-----PHANASKHYVSNELRMLERFGG 255
            +F +E++ G G +  VYRA    DG  VA+K           ++     E+ +L++   
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 256 KNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDL---SQLQWYGYCLFRALA 308
            N +IKY   F   +    VLE           +  KK+  L     +  Y   L  AL 
Sbjct: 92  PN-VIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALE 150

Query: 309 SLHKQGIVHRDVKPGN-FLFSCKAVKGYLIDFNLAMVGFDGSFNQA-TLPGTKY 360
            +H + ++HRD+KP N F+ +   VK  L D  L    F      A +L GT Y
Sbjct: 151 HMHSRRVMHRDIKPANVFITATGVVK--LGDLGLGRF-FSSKTTAAHSLVGTPY 201

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 27/135 (20%), Positives = 42/135 (31%), Gaps = 39/135 (28%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
             GT  + +PE +        K DIWS G  L  +   ++PF+GD   N+  + K     
Sbjct: 196 LVGTPYYMSPERI-HENGYNFKSDIWSLGCLLYEMAALQSPFYGDK-MNLYSLCK----- 248

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                 K+                 PP+  P             +     L  LV+ C+ 
Sbjct: 249 ------KIEQ------------CDYPPL--PS------------DHYSEELRQLVNMCIN 276

Query: 671 VNPRLRISAEDALKH 685
            +P  R         
Sbjct: 277 PDPEKRPDVTYVYDV 291

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 85.0 bits (211), Expect = 4e-18
 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 17/174 (9%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-PHANASKHYVSNELRMLERFGGKNFI 259
           E +++ E+ G G +G V+R    +       K        +  V  E+ +L     +N I
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRN-I 63

Query: 260 IKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQ 313
           +     F+  +    + E +      +R  +     +L++ +   Y   +  AL  LH  
Sbjct: 64  LHLHESFESMEELVMIFEFISGLDIFER--INTSAFELNEREIVSYVHQVCEALQFLHSH 121

Query: 314 GIVHRDVKPGNFLFSCK---AVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
            I H D++P N ++  +    +K  +I+F  A        N   L    +Y  P
Sbjct: 122 NIGHFDIRPENIIYQTRRSSTIK--IIEFGQARQ-LKPGDNFRLLFTAPEYYAP 172

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 37/187 (19%), Positives = 62/187 (33%), Gaps = 49/187 (26%)

Query: 521 ILLLTKLHPVPVLII-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWS 577
           I+  T+     + II F     L  G   +         + APEV           D+WS
Sbjct: 133 IIYQTR-RSSTIKIIEFGQARQLKPGDNFRL--LFTAPEYYAPEVHQHDVV-STATDMWS 188

Query: 578 AGVTLLYLMI-GRTPFFGDPEQNI-KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSL 635
            G  L+Y+++ G  PF  +  Q I ++I  +               E +F E    A   
Sbjct: 189 LGT-LVYVLLSGINPFLAETNQQIIENI--MNAEYTF--------DEEAFKEISIEAM-- 235

Query: 636 PPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEML 695
                                      D VD+ L    + R++A +AL+H +     E +
Sbjct: 236 ---------------------------DFVDRLLVKERKSRMTASEALQHPWLKQKIERV 268

Query: 696 RKQKLLR 702
             + +  
Sbjct: 269 STKVIRT 275

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 19/153 (12%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKY 262
           F V ++ G G +G +   +       VAIK     +    +  E R  ++ G  + I + 
Sbjct: 11  FRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQV 70

Query: 263 EGCFKCGDSDCFV-------LEHV--KHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQ 313
                CG  +  V       LE +    DR   LK  + +         L   +  +H +
Sbjct: 71  YYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFSLKTVLMI------AIQLISRMEYVHSK 124

Query: 314 GIVHRDVKPGNFLF----SCKAVKGYLIDFNLA 342
            +++RDVKP NFL     +      ++IDF LA
Sbjct: 125 NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALA 157

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 85.6 bits (212), Expect = 7e-18
 Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 32/185 (17%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKD----------IAKLR 607
           RAPE+L  ++H    +DIW+ G     L+     F    E               I  + 
Sbjct: 202 RAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVM 261

Query: 608 G--SEDLWE-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL 664
           G  ++  WE + K+    +   +  +   +    +L ++ +    +PD      S  F L
Sbjct: 262 GFPADKDWEDIKKMPEHSTLMKD--FRRNTYTNCSLIKYMEKHKVKPD------SKAFHL 313

Query: 665 VDKCLTVNPRLRISAEDALKHEFF-----------APCHEMLRKQKLLRQGSSIDNTTGN 713
           + K LT++P  RI++E A++  +F           A C     K++ L +    D     
Sbjct: 314 LQKLLTMDPIKRITSEQAMQDPYFLEDPLPTSDVFAGCQIPYPKREFLTEEEPDDKGDKK 373

Query: 714 PSHKQ 718
              +Q
Sbjct: 374 NQQQQ 378

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 25/176 (14%)

Query: 187 HNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGT--VVAIKCPHANASKHYVS 244
                   +V   FE      + G G YG VY+A+RK+       A+K            
Sbjct: 9   VKLSSERERVEDLFE--YEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSAC 66

Query: 245 NELRMLERFGGKNFIIKYEGCFKCGDSDCF--VLEHVKHD-----------RPEVLKKEI 291
            E+ +L      N +I  +  F          + ++ +HD           +      ++
Sbjct: 67  REIALLRELKHPN-VISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQL 125

Query: 292 DLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA-----VKGYLIDFNLA 342
               ++   Y +   +  LH   ++HRD+KP N L   +      VK  + D   A
Sbjct: 126 PRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVK--IADMGFA 179

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 84.2 bits (209), Expect = 8e-18
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRG--SEDLW 613
           R+PE+L      GP +D+W+ G  +   ++   P + G  + + +  I K  G       
Sbjct: 169 RSPELLVGDTQYGPPVDVWAIG-CVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQ 227

Query: 614 E-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
           +  +                     + +P+   +      F   I      L+  CL ++
Sbjct: 228 QVFSTNQYF--------------SGVKIPDPEDMEPLELKFPN-ISYPALGLLKGCLHMD 272

Query: 673 PRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSS 706
           P  R++ E  L H +F    E+    K   + + 
Sbjct: 273 PTERLTCEQLLHHPYFENIREIEDLAKEHDKPAE 306

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 74.9 bits (185), Expect = 8e-15
 Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 19/154 (12%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E +    + G G YG V++ R ++ G +VAIK    +     +      E+RML++    
Sbjct: 3   EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHP 62

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID-------LSQLQWYGYCLFRALAS 309
           N ++     F+       V E+  H     +  E+D          ++   +   +A+  
Sbjct: 63  N-LVNLLEVFRRKRRLHLVFEYCDHT----VLHELDRYQRGVPEHLVKSITWQTLQAVNF 117

Query: 310 LHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
            HK   +HRDVKP N L +    +K  L DF  A
Sbjct: 118 CHKHNCIHRDVKPENILITKHSVIK--LCDFGFA 149

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 83.8 bits (208), Expect = 1e-17
 Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 24/137 (17%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRG--SEDLW 613
           RAP+VL  S+     +DIWS G  +   MI   P F G  + + +  I  + G  +   W
Sbjct: 186 RAPDVLMGSKKYSTSVDIWSIG-CIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREW 244

Query: 614 -EVAKLHN-RESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
            +V +L   ++ +F                                     DL+   L  
Sbjct: 245 PQVQELPLWKQRTFQV-------FEKKPWSSIIPGFC----------QEGIDLLSNMLCF 287

Query: 672 NPRLRISAEDALKHEFF 688
           +P  RISA DA+ H +F
Sbjct: 288 DPNKRISARDAMNHPYF 304

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 20/154 (12%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E +   E+ G G YG VY+A+    G +VA+K    +A    + +    E+ +L+     
Sbjct: 21  EKYQKLEKVGEGTYGVVYKAKDSQ-GRIVALKRIRLDAEDEGIPSTAIREISLLKELHHP 79

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID-------LSQLQWYGYCLFRALAS 309
           N I+              V E ++ D    LKK +D        SQ++ Y Y L R +A 
Sbjct: 80  N-IVSLIDVIHSERCLTLVFEFMEKD----LKKVLDENKTGLQDSQIKIYLYQLLRGVAH 134

Query: 310 LHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
            H+  I+HRD+KP N L +   A+K  L DF LA
Sbjct: 135 CHQHRILHRDLKPQNLLINSDGALK--LADFGLA 166

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 83.8 bits (208), Expect = 1e-17
 Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 33/155 (21%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRG--SEDLW 613
           RAPE+L      G  +D+W+ G  L+  M    P F GD + + +  I    G       
Sbjct: 191 RAPELLVGDVKYGKAVDVWAIG-CLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQ 249

Query: 614 E-VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP---SSLFDLVDKCL 669
           E   K                    + LPE      +R       P     + DL  KCL
Sbjct: 250 ELFNKNPVFA--------------GVRLPEI----KEREPLERRYPKLSEVVIDLAKKCL 291

Query: 670 TVNPRLRISAEDALKHEFF----APCH--EMLRKQ 698
            ++P  R    + L H+FF          + L+ +
Sbjct: 292 HIDPDKRPFCAELLHHDFFQMDGFAERFSQELQLK 326

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 74.2 bits (183), Expect = 2e-14
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 19/154 (12%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           E +      G G YG V + R K+ G +VAIK    +     V      E+++L++   +
Sbjct: 25  EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHE 84

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID-------LSQLQWYGYCLFRALAS 309
           N ++      K       V E V H     +  +++          +Q Y + +   +  
Sbjct: 85  N-LVNLLEVCKKKKRWYLVFEFVDHT----ILDDLELFPNGLDYQVVQKYLFQIINGIGF 139

Query: 310 LHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
            H   I+HRD+KP N L S    VK  L DF  A
Sbjct: 140 CHSHNIIHRDIKPENILVSQSGVVK--LCDFGFA 171

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 12/137 (8%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDLWEVA 616
           RAPE++F +QH    +DIWS G     +M+G   F GD     + +I ++ G      + 
Sbjct: 198 RAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLR 257

Query: 617 KLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLR 676
           KL+          +    L       W  +     D         +DL+   L   P  R
Sbjct: 258 KLNPS--------HTDVDLYNSKGIPWSNVF---SDHSLKDAKEAYDLLSALLQYLPEER 306

Query: 677 ISAEDALKHEFFAPCHE 693
           +   +AL H +F   H+
Sbjct: 307 MKPYEALCHPYFDELHD 323

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 39/180 (21%), Positives = 64/180 (35%), Gaps = 29/180 (16%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-KHYVSNELRMLERFGGKNFI 259
           + F VE   G G +GTV   + K+ G  VAIK    +   ++     ++ L      N I
Sbjct: 23  DRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPN-I 81

Query: 260 IKYEGCFKCGDSDCF-------VLEHVKHD------RPEVLKKEIDLSQLQWYGYCLFRA 306
           ++ +  F               V+E+V              +       ++ + + L R+
Sbjct: 82  VQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRS 141

Query: 307 LASLHKQ--GIVHRDVKPGNFL---FSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYV 361
           +  LH     + HRD+KP N L        +K  L DF  A        N        Y+
Sbjct: 142 IGCLHLPSVNVCHRDIKPHNVLVNEADGT-LK--LCDFGSAKKLSPSEPN------VAYI 192

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 83.8 bits (208), Expect = 1e-17
 Identities = 40/151 (26%), Positives = 59/151 (39%), Gaps = 36/151 (23%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRG--SEDLW 613
           R P++L  S     ++D+W  G  + Y M    P F G   +  +  I ++ G  +E+ W
Sbjct: 167 RPPDILLGSTDYSTQIDMWGVG-CIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETW 225

Query: 614 EVAKLHNRESSFPEDLYAAKSLP---PINLPEWCKLITKRPDFLEVIP---SSLFDLVDK 667
                       P       S       N P++     +    L   P   S   DL+ K
Sbjct: 226 ------------PG----ILSNEEFKTYNYPKY-----RAEALLSHAPRLDSDGADLLTK 264

Query: 668 CLTVNPRLRISAEDALKHEFF----APCHEM 694
            L    R RISAEDA+KH FF       H++
Sbjct: 265 LLQFEGRNRISAEDAMKHPFFLSLGERIHKL 295

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 66.1 bits (162), Expect = 8e-12
 Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 58/173 (33%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-----------------------CPHAN 237
           E++I  ++ G G Y TVY+ + K    +VA+K                         HAN
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHAN 61

Query: 238 ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID----- 292
                    + + +    +  +               V E++  D    LK+ +D     
Sbjct: 62  I--------VTLHDIIHTEKSLT-------------LVFEYLDKD----LKQYLDDCGNI 96

Query: 293 --LSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             +  ++ + + L R LA  H+Q ++HRD+KP N L + +  +K  L DF LA
Sbjct: 97  INMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELK--LADFGLA 147

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 15/137 (10%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDLWEVA 616
           RAPE++  +    P +D+WS G     L++G+  F G+   + +  I ++ G+    ++ 
Sbjct: 208 RAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMI 267

Query: 617 KLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLR 676
           +++          Y     P +   +W K+        E  PS   DL+++ L   P LR
Sbjct: 268 RMNPH--------YTEVRFPTLKAKDWRKI------LPEGTPSLAIDLLEQILRYEPDLR 313

Query: 677 ISAEDALKHEFFAPCHE 693
           I+  +A+ H FF     
Sbjct: 314 INPYEAMAHPFFDHLRN 330

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 43/209 (20%), Positives = 67/209 (32%), Gaps = 61/209 (29%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK--CPHANASKHYVSNELRMLERFGGKNF 258
           + + + +  G+G +G V        G   A+K           Y + EL +++     N 
Sbjct: 7   KKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVN- 61

Query: 259 IIKYEGCFKCGDSDC--------------------------------------FVLEHVK 280
           IIK    F     +                                        ++E+V 
Sbjct: 62  IIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP 121

Query: 281 HDRPEVLKKEIDLSQ------LQWYGYCLFRALASLHKQGIVHRDVKPGNFLF--SCKAV 332
               +VLK  I   +      +  Y Y LFRA+  +H  GI HRD+KP N L       +
Sbjct: 122 DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTL 181

Query: 333 KGYLIDFNLAMVGFDGSFNQATLPGTKYV 361
           K  L DF  A        +        Y+
Sbjct: 182 K--LCDFGSAKKLIPSEPS------VAYI 202

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 22/136 (16%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRG--SEDLW 613
           R P+VLF ++     +D+WSAG     L     P F G+   + +K I +L G  +E+ W
Sbjct: 168 RPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQW 227

Query: 614 -EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
             + KL + +  +P            +L      +           ++  DL+   L  N
Sbjct: 228 PSMTKLPDYKP-YP------MYPATTSLVNVVPKLN----------ATGRDLLQNLLKCN 270

Query: 673 PRLRISAEDALKHEFF 688
           P  RISAE+AL+H +F
Sbjct: 271 PVQRISAEEALQHPYF 286

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 70.6 bits (174), Expect = 2e-13
 Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 11/150 (7%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN----ELRMLERFGGK 256
           + +   E+ G G YGTV++A+ +    +VA+K    +     V +    E+ +L+    K
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQ 313
           N I++             V E    D  +       ++D   ++ + + L + L   H +
Sbjct: 62  N-IVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR 120

Query: 314 GIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
            ++HRD+KP N L +    +K  L +F LA
Sbjct: 121 NVLHRDLKPQNLLINRNGELK--LANFGLA 148

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 19/139 (13%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRG--SEDLWE 614
           RAPE++F +      +D+WSAG  L  L++G+  F GD   + + +I K+ G  + +   
Sbjct: 223 RAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIR 282

Query: 615 VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR 674
               +  E  FP        +       W K+   R       P     L  + L   P 
Sbjct: 283 EMNPNYTEFKFP-------QIKAHP---WTKVFRPR------TPPEAIALCSRLLEYTPT 326

Query: 675 LRISAEDALKHEFFAPCHE 693
            R++  +A  H FF    +
Sbjct: 327 ARLTPLEACAHSFFDELRD 345

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 31/200 (15%)

Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH 235
           S++  + AT     D+      P   S+   +  G+G +G VY+A+  + G +VAIK   
Sbjct: 35  SKVTTVVATPGQGPDR------PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIK--K 86

Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC------FVLEHVKHD------R 283
               K + + EL+++ +    N I++    F              VL++V          
Sbjct: 87  VLQDKRFKNRELQIMRKLDHCN-IVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARH 145

Query: 284 PEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLF--SCKAVKGYLIDFNL 341
               K+ + +  ++ Y Y LFR+LA +H  GI HRD+KP N L       +K  L DF  
Sbjct: 146 YSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLK--LCDFGS 203

Query: 342 AMVGFDGSFNQATLPGTKYV 361
           A     G  N        Y+
Sbjct: 204 AKQLVRGEPN------VSYI 217

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 27/196 (13%)

Query: 186 NHNDDQTNAKVLPNFES-FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC----PHANASK 240
           +H+  + N      F   + +    G G +G V + + +      A+K        N   
Sbjct: 6   HHSSGRENLYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDT 65

Query: 241 HYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EID 292
             +  E+ +L++    N I+K     +   S   V E        D   ++K+    E D
Sbjct: 66  STILREVELLKKLDHPN-IMKLFEILEDSSSFYIVGELYTGGELFDE--IIKRKRFSEHD 122

Query: 293 LSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDG 348
            +++      +F  +  +HK  IVHRD+KP N L   K     +K  +IDF L+   F  
Sbjct: 123 AARII---KQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIK--IIDFGLSTC-FQQ 176

Query: 349 SFNQATLPGTK-YVPP 363
           +       GT  Y+ P
Sbjct: 177 NTKMKDRIGTAYYIAP 192

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 49/171 (28%), Positives = 66/171 (38%), Gaps = 45/171 (26%)

Query: 521 ILLLTKLHPVPVLII-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWS 577
           ILL +K     + II F L        + KD    GT  + APEVL  +     K D+WS
Sbjct: 152 ILLESKEKDCDIKIIDFGLSTCFQQNTKMKD--RIGTAYYIAPEVLRGTY--DEKCDVWS 207

Query: 578 AGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPP 637
           AGV L  L+ G  PF+G  E +I       G             + +F            
Sbjct: 208 AGVILYILLSGTPPFYGKNEYDILK-RVETG-------------KYAFDL---------- 243

Query: 638 INLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
              P+W             I     DL+ K LT +P LRI+A   L+H + 
Sbjct: 244 ---PQW-----------RTISDDAKDLIRKMLTFHPSLRITATQCLEHPWI 280

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 40/180 (22%), Positives = 66/180 (36%), Gaps = 28/180 (15%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKY 262
           F   E  GSGG+G V++A+ + DG    IK      +      E++ L +    N I+ Y
Sbjct: 13  FKEIELIGSGGFGQVFKAKHRIDGKTYVIK--RVKYNNEKAEREVKALAKLDHVN-IVHY 69

Query: 263 EGCFKCGDSDCFVLEHVKHDRP-----------------EVLKKE----IDLSQLQWYGY 301
            GC+   D D                             + ++K     +D         
Sbjct: 70  NGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFE 129

Query: 302 CLFRALASLHKQGIVHRDVKPGN-FLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
            + + +  +H + +++RD+KP N FL   K VK  + DF L          +    GT  
Sbjct: 130 QITKGVDYIHSKKLINRDLKPSNIFLVDTKQVK--IGDFGLVTS-LKNDGKRTRSKGTLR 186

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 53.5 bits (129), Expect = 7e-08
 Identities = 18/138 (13%), Positives = 38/138 (27%), Gaps = 47/138 (34%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + +PE +    + G ++D+++ G+ L  L+      F +  +   D+         
Sbjct: 183 GTLRYMSPEQISSQDY-GKEVDLYALGLILAELLHVCDTAF-ETSKFFTDLRD------- 233

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
                                 +  I                         L+ K L+  
Sbjct: 234 --------------------GIISDI------------------FDKKEKTLLQKLLSKK 255

Query: 673 PRLRISAEDALKHEFFAP 690
           P  R +  + L+      
Sbjct: 256 PEDRPNTSEILRTLTVWK 273

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 31/198 (15%)

Query: 186 NHNDDQTNAKVLPNFES-FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC----PHANASK 240
           +H+  + N      F   + +    G G +G V + + +      A+K        N   
Sbjct: 6   HHSSGRENLYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDT 65

Query: 241 HYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF--VLEHVK----HDRPEVLKK----E 290
             +  E+ +L++    N I+K     +  DS  F  V E        D   ++K+    E
Sbjct: 66  STILREVELLKKLDHPN-IMKLFEILE--DSSSFYIVGELYTGGELFDE--IIKRKRFSE 120

Query: 291 IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGF 346
            D +++      +F  +  +HK  IVHRD+KP N L   K     +K  +IDF L+   F
Sbjct: 121 HDAARI---IKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIK--IIDFGLSTC-F 174

Query: 347 DGSFNQATLPGTK-YVPP 363
             +       GT  Y+ P
Sbjct: 175 QQNTKMKDRIGTAYYIAP 192

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 76.3 bits (188), Expect = 9e-15
 Identities = 49/171 (28%), Positives = 65/171 (38%), Gaps = 45/171 (26%)

Query: 521 ILLLTKLHPVPVLII-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWS 577
           ILL +K     + II F L        + KD    GT  + APEVL        K D+WS
Sbjct: 152 ILLESKEKDCDIKIIDFGLSTCFQQNTKMKD--RIGTAYYIAPEVL--RGTYDEKCDVWS 207

Query: 578 AGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPP 637
           AGV L  L+ G  PF+G  E +I       G             + +F            
Sbjct: 208 AGVILYILLSGTPPFYGKNEYDILK-RVETG-------------KYAFDL---------- 243

Query: 638 INLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
              P+W             I     DL+ K LT +P LRI+A   L+H + 
Sbjct: 244 ---PQWRT-----------ISDDAKDLIRKMLTFHPSLRITATQCLEHPWI 280

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 83.2 bits (205), Expect = 3e-17
 Identities = 27/203 (13%), Positives = 46/203 (22%), Gaps = 44/203 (21%)

Query: 202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK-----HYVSNELRMLERFGGK 256
              + E    G    V+  R        A+K     A         +        R  G+
Sbjct: 63  KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGE 122

Query: 257 NFIIKYEGCFKCGDSD-------------------------CFVLEHVKHDRPEVLKKEI 291
           +     +       SD                           ++     D   +     
Sbjct: 123 SPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLD 182

Query: 292 DLSQLQ---------WYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNL 341
            +   +              L R  A+L  +G+VH    P N        +   L D + 
Sbjct: 183 FVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLM--LGDVSA 240

Query: 342 AMVGFDGSFNQATLPGTKYVPPV 364
                 G+   A+     Y P  
Sbjct: 241 LWK--VGTRGPASSVPVTYAPRE 261

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 73.5 bits (180), Expect = 4e-14
 Identities = 16/148 (10%), Positives = 36/148 (24%), Gaps = 34/148 (22%)

Query: 550 PCAGTKGFRAPEVLFRSQHQ-GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRG 608
             +    +   E L  S       L+ W  G+++  +     PF                
Sbjct: 250 ASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTP----------- 298

Query: 609 SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC 668
                        + S+            +                  +P  +  L+ + 
Sbjct: 299 -----------GIKGSWKRPSLRVPGTDSLAFGSCTP-----------LPDFVKTLIGRF 336

Query: 669 LTVNPRLRISAEDALKHEFFAPCHEMLR 696
           L  + R R+   +A++   F      + 
Sbjct: 337 LNFDRRRRLLPLEAMETPEFLQLQNEIS 364

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 83.1 bits (206), Expect = 3e-17
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 19/139 (13%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRG--SEDLWE 614
           RAPE++F + +    +DIWS G  +  LM G+  F G+   + + +I K+ G  S +  +
Sbjct: 208 RAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIK 267

Query: 615 VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR 674
               +  E  FP+       + P     + K+   R       P    DL+ + L   P 
Sbjct: 268 TMNPNYMEHKFPQ-------IRPHP---FSKVFRPR------TPPDAIDLISRLLEYTPS 311

Query: 675 LRISAEDALKHEFFAPCHE 693
            R++A +AL H FF     
Sbjct: 312 ARLTAIEALCHPFFDELRT 330

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 76.2 bits (188), Expect = 7e-15
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 27/189 (14%)

Query: 168 KQGKRDQISRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGT 227
           K    D  ++++ + A+     +Q          ++   +  G+G +G V++A+      
Sbjct: 14  KLNPLDDPNKVIKVLASDGKTGEQRE-------IAYTNCKVIGNGSFGVVFQAKLVESD- 65

Query: 228 VVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC------FVLEHVKH 281
            VAIK    +  K + + EL+++      N ++  +  F              VLE+V  
Sbjct: 66  EVAIKKVLQD--KRFKNRELQIMRIVKHPN-VVDLKAFFYSNGDKKDEVFLNLVLEYVPE 122

Query: 282 D------RPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLF--SCKAVK 333
                      LK+ + +  ++ Y Y L R+LA +H  GI HRD+KP N L       +K
Sbjct: 123 TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLK 182

Query: 334 GYLIDFNLA 342
             LIDF  A
Sbjct: 183 --LIDFGSA 189

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 25/164 (15%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK---CPHANASKHYVSNELRMLERFGGKN 257
             F   +  G GG+G V+ A+ K D    AIK    P+   ++  V  E++ L +     
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 64

Query: 258 FIIKYEGCFKCGDSD------------CFVLEHV-KHDRPEVLKK-----EIDLSQLQWY 299
            I++Y   +   ++                ++   K +  + +       E + S     
Sbjct: 65  -IVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHI 123

Query: 300 GYCLFRALASLHKQGIVHRDVKPGN-FLFSCKAVKGYLIDFNLA 342
              +  A+  LH +G++HRD+KP N F      VK  + DF L 
Sbjct: 124 FLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVK--VGDFGLV 165

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 48/138 (34%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN--IKDIAKLRGSE 610
           GTK + +PE +  + +   K+DI+S G+ +L+ ++   PF    E+   + D+       
Sbjct: 192 GTKLYMSPEQIHGNSY-SHKVDIFSLGL-ILFELL--YPFSTQMERVRTLTDV------- 240

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                     R   FP        L     P                    + +V   L+
Sbjct: 241 ----------RNLKFPP-------LFTQKYPC------------------EYVMVQDMLS 265

Query: 671 VNPRLRISAEDALKHEFF 688
            +P  R  A + +++  F
Sbjct: 266 PSPMERPEAINIIENAVF 283

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 81.3 bits (201), Expect = 5e-17
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 13/149 (8%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKY 262
           + +  + GSG +G +Y       G  VAIK          +  E ++ +   G   I   
Sbjct: 11  YRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTI 70

Query: 263 EGCFKCGDSDCFV-------LEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGI 315
             C   GD +  V       LE +         ++  L  +      +   +  +H +  
Sbjct: 71  RWCGAEGDYNVMVMELLGPSLEDLF----NFCSRKFSLKTVLLLADQMISRIEYIHSKNF 126

Query: 316 VHRDVKPGNFLFSC--KAVKGYLIDFNLA 342
           +HRDVKP NFL     K    Y+IDF LA
Sbjct: 127 IHRDVKPDNFLMGLGKKGNLVYIIDFGLA 155

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 81.6 bits (202), Expect = 6e-17
 Identities = 36/182 (19%), Positives = 63/182 (34%), Gaps = 19/182 (10%)

Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK--- 232
           S      ++G  N       V+ + + ++  ++ G GG+  V      +DG   A+K   
Sbjct: 4   SHHHHHHSSGRENLYFQGHMVIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRIL 63

Query: 233 CPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD----CFVLEHVKH------- 281
           C      +     E  M   F   N I++                 +L   K        
Sbjct: 64  CHEQQ-DREEAQREADMHRLFNHPN-ILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEI 121

Query: 282 DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFN 340
           +R +     +   Q+ W    + R L ++H +G  HRD+KP N L   +      L+D  
Sbjct: 122 ERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPV--LMDLG 179

Query: 341 LA 342
             
Sbjct: 180 SM 181

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 41/135 (30%)

Query: 553 GTKGFRAPEVLFRSQHQ--GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
            T  +RAPE+     H     + D+WS G  L  +M G  P+    ++            
Sbjct: 205 CTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQK------------ 252

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                            D  A      +++P+  +             S+L+ L++  +T
Sbjct: 253 ----------------GDSVALAVQNQLSIPQSPRH-----------SSALWQLLNSMMT 285

Query: 671 VNPRLRISAEDALKH 685
           V+P  R      L  
Sbjct: 286 VDPHQRPHIPLLLSQ 300

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 82.1 bits (203), Expect = 7e-17
 Identities = 50/255 (19%), Positives = 94/255 (36%), Gaps = 18/255 (7%)

Query: 121 AAELPVTNRQLRKPSAKTKFLHKDGIDPKGPKLQASRHNKAFDAKEKKQGKRDQISRIMA 180
           ++ + +    L   S K              K   S  +       K +        I A
Sbjct: 9   SSGVDLGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSKRTSALAVDIPA 68

Query: 181 LKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH--ANA 238
             A  +H         + +F +    E  G G +G V++      G  +A K        
Sbjct: 69  PPAPFDHRIVTAKQGAVNSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMK 128

Query: 239 SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLS 294
            K  V NE+ ++ +    N +I+    F+  +    V+E+V      DR  ++ +  +L+
Sbjct: 129 DKEEVKNEISVMNQLDHAN-LIQLYDAFESKNDIVLVMEYVDGGELFDR--IIDESYNLT 185

Query: 295 QLQWYGYC--LFRALASLHKQGIVHRDVKPGNFLFSCK---AVKGYLIDFNLAMVGFDGS 349
           +L    +   +   +  +H+  I+H D+KP N L   +    +K  +IDF LA   +   
Sbjct: 186 ELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIK--IIDFGLARR-YKPR 242

Query: 350 FNQATLPGT-KYVPP 363
                  GT +++ P
Sbjct: 243 EKLKVNFGTPEFLAP 257

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 40/161 (24%), Positives = 57/161 (35%), Gaps = 45/161 (27%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLY-LMIGRTPFFGDPEQNI-KDIAKLRGSE 610
           GT  F APEV+          D+WS GV + Y L+ G +PF GD +     +I  L    
Sbjct: 250 GTPEFLAPEVVNYDFV-SFPTDMWSVGV-IAYMLLSGLSPFLGDNDAETLNNI--LACRW 305

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
           D               +              E+           + I     + + K L 
Sbjct: 306 D-------------LED-------------EEF-----------QDISEEAKEFISKLLI 328

Query: 671 VNPRLRISAEDALKHEFFA--PCHEMLRKQKLLRQGSSIDN 709
                RISA +ALKH + +    H  L  QK   +GS   +
Sbjct: 329 KEKSWRISASEALKHPWLSDHKLHSRLSAQKKKNRGSDAQD 369

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 81.9 bits (203), Expect = 7e-17
 Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 28/144 (19%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRG--SEDLW 613
           RAPE+LF ++  G  +D+W+ G  +L  ++ R PF  GD + + +  I +  G  +E+ W
Sbjct: 179 RAPELLFGARMYGVGVDMWAVG-CILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQW 237

Query: 614 -EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++  L +  + F          P I L                    L DL+      N
Sbjct: 238 PDMCSLPDYVT-FKS-------FPGIPLHHIFS----------AAGDDLLDLIQGLFLFN 279

Query: 673 PRLRISAEDALKHEFF----APCH 692
           P  RI+A  ALK ++F     P  
Sbjct: 280 PCARITATQALKMKYFSNRPGPTP 303

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 70.3 bits (173), Expect = 4e-13
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 22/157 (14%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK---CPHANASKHYVSN----ELRMLERF 253
           + +   +  G G + TVY+AR KN   +VAIK     H + +K  ++     E+++L+  
Sbjct: 10  KRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL 69

Query: 254 GGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID-------LSQLQWYGYCLFRA 306
              N II     F    +   V + ++ D    L+  I         S ++ Y     + 
Sbjct: 70  SHPN-IIGLLDAFGHKSNISLVFDFMETD----LEVIIKDNSLVLTPSHIKAYMLMTLQG 124

Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           L  LH+  I+HRD+KP N L      +K  L DF LA
Sbjct: 125 LEYLHQHWILHRDLKPNNLLLDENGVLK--LADFGLA 159

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 81.5 bits (202), Expect = 8e-17
 Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 41/166 (24%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRGS--EDLW 613
           R PE+L   +  GP +D+W AG  ++  M  R+P   G+ EQ+ +  I++L GS   ++W
Sbjct: 195 RPPELLLGERDYGPPIDLWGAG-CIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW 253

Query: 614 -EVAKLHNRESSFPEDLYAAKSLPPINLPEWCK--LITKRPDFLEVIPSSLFDLVDKCLT 670
             V      E               + L +  K  +  +   ++        DL+DK L 
Sbjct: 254 PNVDNYELYE--------------KLELVKGQKRKVKDRLKAYV--RDPYALDLIDKLLV 297

Query: 671 VNPRLRISAEDALKHEFF-----------------APCHEMLRKQK 699
           ++P  RI ++DAL H+FF                     E L   +
Sbjct: 298 LDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTHLTSMFEYLAPPR 343

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 39/159 (24%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNE--------LR---MLERFGGKNF 258
           G G +G V++AR +  G  VA+K       K  + NE        LR   +L+    +N 
Sbjct: 26  GQGTFGEVFKARHRKTGQKVALK-------KVLMENEKEGFPITALREIKILQLLKHENV 78

Query: 259 -----IIKYEGCFKCGDSDCF--VLEHVKHDRPEVLKKEID-------LSQLQWYGYCLF 304
                I + +             V +  +HD    L   +        LS+++     L 
Sbjct: 79  VNLIEICRTKASPYNRCKGSIYLVFDFCEHD----LAGLLSNVLVKFTLSEIKRVMQMLL 134

Query: 305 RALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             L  +H+  I+HRD+K  N L +    +K  L DF LA
Sbjct: 135 NGLYYIHRNKILHRDMKAANVLITRDGVLK--LADFGLA 171

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 80.4 bits (199), Expect = 8e-17
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 18/145 (12%)

Query: 199 NFES-FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PHANAS-KHYVSNELRMLERF 253
            + + F   E+ GSG +G+V++  ++ DG + AIK    P A +  +     E+      
Sbjct: 8   RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVL 67

Query: 254 GGKNFIIKYEGCFKCGDSDCFVLEHV----------KHDRPEVLKKEIDLSQLQWYGYCL 303
           G  + +++Y   +   D      E+           ++ R     KE   ++L+     +
Sbjct: 68  GQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKE---AELKDLLLQV 124

Query: 304 FRALASLHKQGIVHRDVKPGNFLFS 328
            R L  +H   +VH D+KP N   S
Sbjct: 125 GRGLRYIHSMSLVHMDIKPSNIFIS 149

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 46/142 (32%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           G   F A EVL  +    PK DI++  +T+     G  P                     
Sbjct: 192 GDSRFLANEVLQENYTHLPKADIFALALTV-VCAAGAEP--------------------- 229

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLIT-KRPDFLEVIPSSLFDLVDKCLTV 671
                                   P N  +W ++   + P   +V+     +L+   +  
Sbjct: 230 -----------------------LPRNGDQWHEIRQGRLPRIPQVLSQEFTELLKVMIHP 266

Query: 672 NPRLRISAEDALKHEFFAPCHE 693
           +P  R SA   +KH        
Sbjct: 267 DPERRPSAMALVKHSVLLSASR 288

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 81.0 bits (200), Expect = 8e-17
 Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 29/182 (15%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVSNELRMLERFGGKNFI 259
           +++ +  G G    V+R R K  G + AIK                E  +L++   KN I
Sbjct: 11  WLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN-I 69

Query: 260 IKYEGCFKCGDSD--CFVLEHV----------KHDRPEVLKKEIDLSQLQWYGYCLFRAL 307
           +K     +   +     ++E            +      L +   L  L+     +   +
Sbjct: 70  VKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLR----DVVGGM 125

Query: 308 ASLHKQGIVHRDVKPGNFLFSCKA-----VKGYLIDFNLAMVGFDGSFNQATLPGT-KYV 361
             L + GIVHR++KPGN +           K  L DF  A    D      +L GT +Y+
Sbjct: 126 NHLRENGIVHRNIKPGNIMRVIGEDGQSVYK--LTDFGAARELEDDEQ-FVSLYGTEEYL 182

Query: 362 PP 363
            P
Sbjct: 183 HP 184

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 67.1 bits (164), Expect = 4e-12
 Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 30/145 (20%)

Query: 553 GTKGFRAPEVLFR-------SQHQGPKLDIWSAGVTLLYLMIGRTPF--FGDPEQN---I 600
           GT+ +  P++  R        +  G  +D+WS GVT  +   G  PF  F  P +N   +
Sbjct: 177 GTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVM 236

Query: 601 KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS 660
             I   + S  +  V K  N    +  D           +P  C L       L      
Sbjct: 237 YKIITGKPSGAISGVQKAENGPIDWSGD-----------MPVSCSLSRGLQVLLT----- 280

Query: 661 LFDLVDKCLTVNPRLRISAEDALKH 685
              ++   L  +       +     
Sbjct: 281 --PVLANILEADQEKCWGFDQFFAE 303

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 82.8 bits (205), Expect = 9e-17
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 26/180 (14%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC----PHANASKHYVSNELRMLERFGGK 256
           E +   ++ GSG YG V   R K      AIK       + +S   +  E+ +L+     
Sbjct: 37  EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHP 96

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EIDLSQLQWYGYCLFRALA 308
           N I+K    F+   +   V+E  K     D   ++ +    E+D + +      +   + 
Sbjct: 97  N-IMKLYDFFEDKRNYYLVMECYKGGELFDE--IIHRMKFNEVDAAVI---IKQVLSGVT 150

Query: 309 SLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
            LHK  IVHRD+KP N L   K     +K  ++DF L+ V F+         GT  Y+ P
Sbjct: 151 YLHKHNIVHRDLKPENLLLESKEKDALIK--IVDFGLSAV-FENQKKMKERLGTAYYIAP 207

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 77.0 bits (190), Expect = 6e-15
 Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 40/137 (29%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APEVL   +    K D+WS GV L  L+ G  PF G  +Q I      +G   
Sbjct: 199 LGTAYYIAPEVL--RKKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILR-KVEKG--- 252

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                     + +F               PEW             +     DL+ + L  
Sbjct: 253 ----------KYTFDS-------------PEWKN-----------VSEGAKDLIKQMLQF 278

Query: 672 NPRLRISAEDALKHEFF 688
           + + RISA+ AL+H + 
Sbjct: 279 DSQRRISAQQALEHPWI 295

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 61/236 (25%), Positives = 91/236 (38%), Gaps = 30/236 (12%)

Query: 141 LHKDGIDPKGPKLQASRHNKAFDAKEKKQGKRDQISRIMALKATGNHNDDQTNAKVLPNF 200
           +H       G  L          +           S +      G++ D  +        
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMSSVTASAAPGTASLVPDYWIDGSNRDALS-------- 52

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII 260
           + F VE E G G    VYR ++K      A+K       K  V  E+ +L R    N II
Sbjct: 53  DFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPN-II 111

Query: 261 KYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EIDLSQLQWYGYCLFRALASLHK 312
           K +  F+       VLE V      DR  +++K    E D +        +  A+A LH+
Sbjct: 112 KLKEIFETPTEISLVLELVTGGELFDR--IVEKGYYSERDAADAV---KQILEAVAYLHE 166

Query: 313 QGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
            GIVHRD+KP N L++  A    +K  + DF L+ +  +      T+ GT  Y  P
Sbjct: 167 NGIVHRDLKPENLLYATPAPDAPLK--IADFGLSKI-VEHQVLMKTVCGTPGYCAP 219

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 43/168 (25%)

Query: 521 ILLLTKLHPVPVLII-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWS 577
           +L  T     P+ I  F L  ++ +    K     GT G+ APE+L    + GP++D+WS
Sbjct: 179 LLYATPAPDAPLKIADFGLSKIVEHQVLMKT--VCGTPGYCAPEILRGCAY-GPEVDMWS 235

Query: 578 AGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPP 637
            G+    L+ G  PF+ +          L                  F            
Sbjct: 236 VGIITYILLCGFEPFYDERGDQFMFRRILNCEYY-------------FIS---------- 272

Query: 638 INLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKH 685
              P W +           +  +  DLV K + ++P+ R++   AL+H
Sbjct: 273 ---PWWDE-----------VSLNAKDLVRKLIVLDPKKRLTTFQALQH 306

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 26/163 (15%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-PHANASKHYVSNELRMLERFGGKNFI 259
             F      G G +G V +AR   D    AIK   H       + +E+ +L     +  +
Sbjct: 6   SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQY-V 64

Query: 260 IKYEGCFKCGDSD-------------CFVLEHVK----HDRPEVLKKEIDLSQLQWYGYC 302
           ++Y   +    +                 +E+ +    +D   +  + ++  + +++   
Sbjct: 65  VRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDL--IHSENLNQQRDEYWRLF 122

Query: 303 --LFRALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLA 342
             +  AL+ +H QGI+HRD+KP N        VK  + DF LA
Sbjct: 123 RQILEALSYIHSQGIIHRDLKPMNIFIDESRNVK--IGDFGLA 163

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 74.7 bits (184), Expect = 9e-15
 Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 40/152 (26%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
             GT  + A EVL  + H   K+D++S G+ + + MI   PF    E+            
Sbjct: 190 AIGTAMYVATEVLDGTGHYNEKIDMYSLGI-IFFEMI--YPFSTGMERV----------- 235

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
           ++ +  KL +    FP                        PDF +        ++   + 
Sbjct: 236 NILK--KLRSVSIEFP------------------------PDFDDNKMKVEKKIIRLLID 269

Query: 671 VNPRLRISAEDALKHEFFAPCHEMLRKQKLLR 702
            +P  R  A   L   +    H+    ++ L+
Sbjct: 270 HDPNKRPGARTLLNSGWLPVKHQDEVIKEALK 301

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 15/151 (9%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKY 262
           + V    G G +G ++      +   VAIK     +    + +E R  +   G   I   
Sbjct: 12  YKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNV 71

Query: 263 EGCFKCGDSDCFV-------LEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGI 315
               + G  +  V       LE +     ++  ++  +  +      +   + S+H++ +
Sbjct: 72  YYFGQEGLHNVLVIDLLGPSLEDLL----DLCGRKFSVKTVAMAAKQMLARVQSIHEKSL 127

Query: 316 VHRDVKPGNFLF----SCKAVKGYLIDFNLA 342
           V+RD+KP NFL     S  A   Y++DF + 
Sbjct: 128 VYRDIKPDNFLIGRPNSKNANMIYVVDFGMV 158

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 80.3 bits (199), Expect = 1e-16
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 29/180 (16%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC--PHANASKHYVSNELRMLERFGGKNF 258
           ++FI  E  GSG +  V+  +++  G + A+KC           + NE+ +L++   +N 
Sbjct: 9   KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHEN- 67

Query: 259 IIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EIDLSQL--QWYGYCLFRALA 308
           I+  E  ++       V++ V      DR  +L++    E D S +  Q     +  A+ 
Sbjct: 68  IVTLEDIYESTTHYYLVMQLVSGGELFDR--ILERGVYTEKDASLVIQQ-----VLSAVK 120

Query: 309 SLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
            LH+ GIVHRD+KP N L+        +   + DF L+ +  +G  +  T  GT  YV P
Sbjct: 121 YLHENGIVHRDLKPENLLYLTPEENSKIM--ITDFGLSKMEQNGIMS--TACGTPGYVAP 176

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 41/169 (24%), Positives = 60/169 (35%), Gaps = 47/169 (27%)

Query: 521 ILLLTKLHPVPVLII-FYLLLGNGKQKKDGP---CAGTKGFRAPEVLFRSQHQGPKLDIW 576
           +L LT      ++I  F L     K +++G      GT G+ APEVL +  +    +D W
Sbjct: 137 LLYLTPEENSKIMITDFGL----SKMEQNGIMSTACGTPGYVAPEVLAQKPY-SKAVDCW 191

Query: 577 SAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLP 636
           S GV    L+ G  PF+ + E  + +     G  +             F           
Sbjct: 192 SIGVITYILLCGYPPFYEETESKLFE-KIKEGYYE-------------FES--------- 228

Query: 637 PINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKH 685
               P W        D    I  S  D +   L  +P  R + E AL H
Sbjct: 229 ----PFW-------DD----ISESAKDFICHLLEKDPNERYTCEKALSH 262

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 44/172 (25%)

Query: 521 ILLLTKLHPVPVLII-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWS 577
           +LL +K     V +  F L   + + +       AGT G+ +PEVL +  +    +DIW+
Sbjct: 159 LLLASKAKGAAVKLADFGLAIEVNDSEAWHG--FAGTPGYLSPEVLKKDPY-SKPVDIWA 215

Query: 578 AGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPP 637
            GV L  L++G  PF+ + +  +       G+ D             +P           
Sbjct: 216 CGVILYILLVGYPPFWDEDQHRLYA-QIKAGAYD-------------YPS---------- 251

Query: 638 INLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFA 689
              PEW             +      L+D  LTVNP+ RI+A+ ALK  +  
Sbjct: 252 ---PEWDT-----------VTPEAKSLIDSMLTVNPKKRITADQALKVPWIC 289

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 45/180 (25%), Positives = 70/180 (38%), Gaps = 26/180 (14%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC----PHANASKHYVSNELRMLERFGGK 256
           +++ V+EE G G +  V R   K  G   A K       +      +  E R+  +    
Sbjct: 29  DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHP 88

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKH----DRPEVLKK----EIDLSQLQWYGYCLFRALA 308
           N I++     +       V + V      +   ++ +    E D S        +  ++A
Sbjct: 89  N-IVRLHDSIQEESFHYLVFDLVTGGELFED--IVAREFYSEADASHCI---QQILESIA 142

Query: 309 SLHKQGIVHRDVKPGNFLFSCK----AVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             H  GIVHR++KP N L + K    AVK  L DF LA+   D         GT  Y+ P
Sbjct: 143 YCHSNGIVHRNLKPENLLLASKAKGAAVK--LADFGLAIEVNDSEAWH-GFAGTPGYLSP 199

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 82.0 bits (203), Expect = 2e-16
 Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 27/181 (14%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-----PHANASKHYVSNELRMLERFGG 255
           + +  +   G G +G V   + K  G   A+K            K  +  E+++L++   
Sbjct: 26  DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDH 85

Query: 256 KNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EIDLSQLQWYGYCLFRAL 307
            N I+K    F+       V E        D   ++ +    E+D +++      +   +
Sbjct: 86  PN-IMKLYEFFEDKGYFYLVGEVYTGGELFDE--IISRKRFSEVDAARI---IRQVLSGI 139

Query: 308 ASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQATLPGTK-YVP 362
             +HK  IVHRD+KP N L   K+    ++  +IDF L+   F+ S       GT  Y+ 
Sbjct: 140 TYMHKNKIVHRDLKPENLLLESKSKDANIR--IIDFGLSTH-FEASKKMKDKIGTAYYIA 196

Query: 363 P 363
           P
Sbjct: 197 P 197

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 76.7 bits (189), Expect = 8e-15
 Identities = 42/137 (30%), Positives = 54/137 (39%), Gaps = 40/137 (29%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APEVL        K D+WS GV L  L+ G  PF G  E +I      +G   
Sbjct: 189 IGTAYYIAPEVL--HGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILK-KVEKG--- 242

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                     + +F               P+W K           +  S  DL+ K LT 
Sbjct: 243 ----------KYTFEL-------------PQWKK-----------VSESAKDLIRKMLTY 268

Query: 672 NPRLRISAEDALKHEFF 688
            P +RISA DAL HE+ 
Sbjct: 269 VPSMRISARDALDHEWI 285

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 25/242 (10%)

Query: 147 DPKGPKLQASRHNKAFDAKEKKQGKRDQISRIMALKATGNHNDDQTNAKVLP----NFES 202
            P        +  + +D  E+ +  R + +              Q   + +     +   
Sbjct: 98  APVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYDNYVFDIWKQYYPQPVEIKHDHVLD 157

Query: 203 -FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-PHANAS-KHYVSNELRMLERFGGKNFI 259
            + + EE G+G +G V+R   +  G   A K     + S K  V  E++ +        +
Sbjct: 158 HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT-L 216

Query: 260 IKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQ 313
           +     F+  +    + E +      ++  V  +   +S+ +   Y   + + L  +H+ 
Sbjct: 217 VNLHDAFEDDNEMVMIYEFMSGGELFEK--VADEHNKMSEDEAVEYMRQVCKGLCHMHEN 274

Query: 314 GIVHRDVKPGNFLFSCK---AVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP--VNGR 367
             VH D+KP N +F+ K    +K  LIDF L     D   +     GT ++  P    G+
Sbjct: 275 NYVHLDLKPENIMFTTKRSNELK--LIDFGLTAH-LDPKQSVKVTTGTAEFAAPEVAEGK 331

Query: 368 KV 369
            V
Sbjct: 332 PV 333

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 64.5 bits (157), Expect = 6e-11
 Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 43/150 (28%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNI-KDIAKLRGSE 610
           GT  F APEV    +  G   D+WS GV L Y+++ G +PF G+ +    +++       
Sbjct: 318 GTAEFAAPEVA-EGKPVGYYTDMWSVGV-LSYILLSGLSPFGGENDDETLRNV--KSCDW 373

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
           +               +               +             I     D + K L 
Sbjct: 374 N-------------MDD-------------SAFSG-----------ISEDGKDFIRKLLL 396

Query: 671 VNPRLRISAEDALKHEFFAPCHEMLRKQKL 700
            +P  R++   AL+H +  P +   R  ++
Sbjct: 397 ADPNTRMTIHQALEHPWLTPGNAPGRDSQI 426

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 18/175 (10%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNF 258
           + + + EE GSG +G V+R   K  G V   K  +      K+ V NE+ ++ +      
Sbjct: 51  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPK- 109

Query: 259 IIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYC--LFRALASLHK 312
           +I     F+       +LE +      DR  +  ++  +S+ +   Y       L  +H+
Sbjct: 110 LINLHDAFEDKYEMVLILEFLSGGELFDR--IAAEDYKMSEAEVINYMRQACEGLKHMHE 167

Query: 313 QGIVHRDVKPGNFLFSCK---AVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
             IVH D+KP N +   K   +VK  +IDF LA    +          T ++  P
Sbjct: 168 HSIVHLDIKPENIMCETKKASSVK--IIDFGLATK-LNPDEIVKVTTATAEFAAP 219

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 40/170 (23%), Positives = 60/170 (35%), Gaps = 49/170 (28%)

Query: 521 ILLLTKLHPVPVLII-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWS 577
           I+  TK     V II F L   L   +  K      T  F APE++ R    G   D+W+
Sbjct: 180 IMCETK-KASSVKIIDFGLATKLNPDEIVKVT--TATAEFAAPEIVDREPV-GFYTDMWA 235

Query: 578 AGVTLLY-LMIGRTPFFGDPEQNI-KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSL 635
            GV L Y L+ G +PF G+ +    +++   R   +             F E        
Sbjct: 236 IGV-LGYVLLSGLSPFAGEDDLETLQNV--KRCDWE-------------FDE-------- 271

Query: 636 PPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKH 685
                  +             +     D +   L   PR R++  DAL+H
Sbjct: 272 -----DAF-----------SSVSPEAKDFIKNLLQKEPRKRLTVHDALEH 305

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 42/183 (22%), Positives = 62/183 (33%), Gaps = 45/183 (24%)

Query: 522 LLLTKLHPVPVLII------FYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQ-GPKLD 574
            L +      + ++       +  L NG+       AGT  F APEVL  +    GPK D
Sbjct: 199 FLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCD 258

Query: 575 IWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKS 634
            WSAGV L  L++G  PF G  + +      L               +  F         
Sbjct: 259 AWSAGVLLHLLLMGAVPFPGVNDADTIS-QVLNK-------------KLCFEN------- 297

Query: 635 LPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEM 694
                 P +            V+     DL+   L  N   R  A  AL+H + +   + 
Sbjct: 298 ------PNY-----------NVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQFSDK 340

Query: 695 LRK 697
           + K
Sbjct: 341 IYK 343

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 47/221 (21%), Positives = 74/221 (33%), Gaps = 61/221 (27%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-------PHANASKHYVSNELRMLERF 253
           + + ++   G G YG V  A       + AIK                 +  E+R++++ 
Sbjct: 26  KKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKL 85

Query: 254 GGKNFIIKYEGCFKCGDSDCFVLEHV------------KHDRPEVLKKEIDLSQLQWYGY 301
              N I +    ++     C V+E                D       ++  +Q+     
Sbjct: 86  HHPN-IARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPE 144

Query: 302 C-------------------------------LFRALASLHKQGIVHRDVKPGNFLFSCK 330
           C                               +F AL  LH QGI HRD+KP NFLFS  
Sbjct: 145 CNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTN 204

Query: 331 ---AVKGYLIDFNLA----MVGFDGSFNQATLPGTK-YVPP 363
               +K  L+DF L+     +     +   T  GT  +V P
Sbjct: 205 KSFEIK--LVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAP 243

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 48/174 (27%)

Query: 521 ILLLTKLHPVPVLII-FYL---LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIW 576
           +LL +K +  PV +  F +   L  +G         GT  F APEV+ R  + G  +D+W
Sbjct: 161 VLLASKENSAPVKLGGFGVAIQLGESGLVAGG--RVGTPHFMAPEVVKREPY-GKPVDVW 217

Query: 577 SAGVTLLY-LMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSL 635
             GV +L+ L+ G  PF+G  E+  + I  ++G                           
Sbjct: 218 GCGV-ILFILLSGCLPFYGTKERLFEGI--IKGKYK-------------MNP-------- 253

Query: 636 PPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFA 689
                 +W             I  S  DLV + L ++P  RI+  +AL H +  
Sbjct: 254 -----RQWSH-----------ISESAKDLVRRMLMLDPAERITVYEALNHPWLK 291

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 78.9 bits (195), Expect = 7e-16
 Identities = 34/180 (18%), Positives = 57/180 (31%), Gaps = 25/180 (13%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-------PHANASKHYVSNELRMLERF 253
           + + + E  G G +  V R   +  G   A+K             S   +  E  +    
Sbjct: 24  DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHML 83

Query: 254 GGKNFIIKYEGCFKCGDSDCFVLEHVKH----DRPEVLKKEIDLSQL-----QWYGYCLF 304
              + I++    +        V E +          ++K+              Y   + 
Sbjct: 84  KHPH-IVELLETYSSDGMLYMVFEFMDGADLCFE--IVKRADAGFVYSEAVASHYMRQIL 140

Query: 305 RALASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
            AL   H   I+HRDVKP   L + K     VK  L  F +A+   +         GT +
Sbjct: 141 EALRYCHDNNIIHRDVKPHCVLLASKENSAPVK--LGGFGVAIQLGESGLVAGGRVGTPH 198

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 13/161 (8%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--VSNELRMLERFGGKNFIIKYEGCFK 267
           G G YG VY  R  ++   +AIK      S++   +  E+ + +    KN I++Y G F 
Sbjct: 31  GKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKN-IVQYLGSFS 89

Query: 268 CGDSDCFVLEHVK----HD--RPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVK 321
                   +E V         R +    + +   + +Y   +   L  LH   IVHRD+K
Sbjct: 90  ENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIK 149

Query: 322 PGNFLFSCK--AVKGYLIDFNLAMVGFDGSFNQATLPGTKY 360
             N L +     +K  + DF  +      +    T  GT  
Sbjct: 150 GDNVLINTYSGVLK--ISDFGTSKRLAGINPCTETFTGTLQ 188

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 32/143 (22%), Positives = 47/143 (32%), Gaps = 44/143 (30%)

Query: 559 APEVLFRSQH-QGPKLDIWSAGVTLLYLMIGRTPF--FGDPEQNIKDIAKLRGSEDLWEV 615
           APE++ +     G   DIWS G T++ +  G+ PF   G+P+  +  +            
Sbjct: 191 APEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGM---------- 240

Query: 616 AKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL 675
                            K  P I  PE      K   F+            KC   +P  
Sbjct: 241 ----------------FKVHPEI--PESMSAEAK--AFIL-----------KCFEPDPDK 269

Query: 676 RISAEDALKHEFFAPCHEMLRKQ 698
           R  A D L  EF     +  + Q
Sbjct: 270 RACANDLLVDEFLKVSSKKKKTQ 292

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 19/144 (13%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDL 612
           T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+   
Sbjct: 192 TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGA 251

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP---SSLFDLVDKCL 669
             + K+ +  +      Y  +SL              + +F  V         DL++K L
Sbjct: 252 ELLKKISSESAR----NYI-QSLTQ----------MPKMNFANVFIGANPLAVDLLEKML 296

Query: 670 TVNPRLRISAEDALKHEFFAPCHE 693
            ++   RI+A  AL H +FA  H+
Sbjct: 297 VLDSDKRITAAQALAHAYFAQYHD 320

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 19/147 (12%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-----NELRMLERFGGKNFIIKYEG 264
           GSG YG+V  A     G  VA+K   +   +  +       ELR+L+    +N +I    
Sbjct: 38  GSGAYGSVCAAFDTKTGLRVAVKK-LSRPFQSIIHAKRTYRELRLLKHMKHEN-VIGLLD 95

Query: 265 CFK-CGDSDCF-----VLEHVKHDRPEVLK-KEIDLSQLQWYGYCLFRALASLHKQGIVH 317
            F      + F     V   +  D   ++K +++    +Q+  Y + R L  +H   I+H
Sbjct: 96  VFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIH 155

Query: 318 RDVKPGNFLF--SCKAVKGYLIDFNLA 342
           RD+KP N      C+ +K  ++DF LA
Sbjct: 156 RDLKPSNLAVNEDCE-LK--ILDFGLA 179

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 79.6 bits (197), Expect = 3e-16
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 19/144 (13%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDL 612
           T+ +RAPEV+    H    +DIWS G  +  ++ G+T F G D    +  I K+ G    
Sbjct: 186 TRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGT 245

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP---SSLFDLVDKCL 669
             V KL+++ +      Y  +SLP           T R DF ++ P       DL++K L
Sbjct: 246 EFVQKLNDKAAK----SYI-QSLPQ----------TPRKDFTQLFPRASPQAADLLEKML 290

Query: 670 TVNPRLRISAEDALKHEFFAPCHE 693
            ++   R++A  AL H FF P  +
Sbjct: 291 ELDVDKRLTAAQALTHPFFEPFRD 314

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 16/145 (11%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK-CPHANASKHY---VSNELRMLERFGGKNFIIKYEGC 265
           GSG YG+V  A  K  G  VAIK       S+ +      EL +L+    +N +I     
Sbjct: 33  GSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHEN-VIGLLDV 91

Query: 266 FK-CGDSDCF-----VLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRD 319
           F        F     V+  ++ D  +++  +    ++Q+  Y + + L  +H  G+VHRD
Sbjct: 92  FTPASSLRNFYDFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRD 151

Query: 320 VKPGNFLF--SCKAVKGYLIDFNLA 342
           +KPGN      C+ +K  ++DF LA
Sbjct: 152 LKPGNLAVNEDCE-LK--ILDFGLA 173

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 80.4 bits (199), Expect = 4e-16
 Identities = 48/170 (28%), Positives = 74/170 (43%), Gaps = 47/170 (27%)

Query: 521 ILLLTKLHPVPVLII-FYL---LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIW 576
           +LL +KL    V +  F L   + G  +       AGT G+ +PEVL +  + G  +D+W
Sbjct: 141 LLLASKLKGAAVKLADFGLAIEVEGEQQAWFG--FAGTPGYLSPEVLRKDPY-GKPVDLW 197

Query: 577 SAGVTLLY-LMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSL 635
           + GV +LY L++G  PF+ + +  +       G+ D             FP         
Sbjct: 198 ACGV-ILYILLVGYPPFWDEDQHRLYQ-QIKAGAYD-------------FPS-------- 234

Query: 636 PPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKH 685
                PEW             +     DL++K LT+NP  RI+A +ALKH
Sbjct: 235 -----PEWDT-----------VTPEAKDLINKMLTINPSKRITAAEALKH 268

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 76.6 bits (189), Expect = 7e-15
 Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 25/180 (13%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC----PHANASKHYVSNELRMLERFGGK 256
           E + + EE G G +  V R  +   G   A         +      +  E R+       
Sbjct: 11  EEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHP 70

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EIDLSQLQWYGYCLFRALA 308
           N I++             + + V      +   ++ +    E D S        +  A+ 
Sbjct: 71  N-IVRLHDSISEEGHHYLIFDLVTGGELFED--IVAREYYSEADASHCI---QQILEAVL 124

Query: 309 SLHKQGIVHRDVKPGNFLFSCK----AVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
             H+ G+VHR++KP N L + K    AVK  L DF LA+             GT  Y+ P
Sbjct: 125 HCHQMGVVHRNLKPENLLLASKLKGAAVK--LADFGLAIEVEGEQQAWFGFAGTPGYLSP 182

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 79.2 bits (196), Expect = 4e-16
 Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 31/185 (16%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC--------PHANASKHYVSNELRMLER 252
           + + + EE GSG +  V + R K+ G   A K              S+  +  E+ +L +
Sbjct: 12  DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQ 71

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EIDLSQL--QWYGYC 302
               N +I     ++       +LE V      D   + +K    E + +    Q     
Sbjct: 72  VLHHN-VITLHDVYENRTDVVLILELVSGGELFDF--LAQKESLSEEEATSFIKQ----- 123

Query: 303 LFRALASLHKQGIVHRDVKPGNFLFSCKAVKGY---LIDFNLAMVGFDGSFNQATLPGT- 358
           +   +  LH + I H D+KP N +   K +      LIDF LA    +       + GT 
Sbjct: 124 ILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE-IEDGVEFKNIFGTP 182

Query: 359 KYVPP 363
           ++V P
Sbjct: 183 EFVAP 187

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 68.4 bits (168), Expect = 2e-12
 Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 49/176 (27%)

Query: 521 ILLLTKLHPVPVL-II-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIW 576
           I+LL K  P+P + +I F L   + +G + K+    GT  F APE++      G + D+W
Sbjct: 146 IMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKN--IFGTPEFVAPEIVNYEPL-GLEADMW 202

Query: 577 SAGVTLLY-LMIGRTPFFGDPEQNI-KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKS 634
           S GV + Y L+ G +PF GD +Q    +I     S D             F E       
Sbjct: 203 SIGV-ITYILLSGASPFLGDTKQETLANI--TSVSYD-------------FDE------- 239

Query: 635 LPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAP 690
                   +                   D + K L    R R++ ++AL+H +  P
Sbjct: 240 ------EFF-----------SHTSELAKDFIRKLLVKETRKRLTIQEALRHPWITP 278

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 79.2 bits (196), Expect = 4e-16
 Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 20/143 (13%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDL 612
           TK +R+P +L    +    +D+W+AG     ++ G+T F G    + ++ I +       
Sbjct: 187 TKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHE 246

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP---SSLFDLVDKCL 669
            +  +L +    +       ++                    +++P       D +++ L
Sbjct: 247 EDRQELLSVIPVY------IRNDMTE----------PHKPLTQLLPGISREAVDFLEQIL 290

Query: 670 TVNPRLRISAEDALKHEFFAPCH 692
           T +P  R++AE+AL H + +   
Sbjct: 291 TFSPMDRLTAEEALSHPYMSIYS 313

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 24/171 (14%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK-CPHANAS--KHYVSNELRMLERFGGKNFIIKYEGCF 266
           G GG G V+ A   +    VAIK     +    KH    E++++ R    N I+K     
Sbjct: 20  GCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKH-ALREIKIIRRLDHDN-IVKVFEIL 77

Query: 267 KCGDSDCFVLEHVKHDRPEV-----LKKEIDLSQL-----------QWYGYCLFRALASL 310
               S          +   V        E DL+ +           + + Y L R L  +
Sbjct: 78  GPSGSQLTDDVGSLTELNSVYIVQEYM-ETDLANVLEQGPLLEEHARLFMYQLLRGLKYI 136

Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYV 361
           H   ++HRD+KP N   + + +   + DF LA +      ++  L  ++ +
Sbjct: 137 HSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHL--SEGL 185

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 78.8 bits (195), Expect = 4e-16
 Identities = 43/138 (31%), Positives = 56/138 (40%), Gaps = 30/138 (21%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRG--SEDLW 613
           RAPEVL +S +    +D+WS G  +   M  R P F G+ E + +  I  L G   ED W
Sbjct: 186 RAPEVLLQSTY-ATPVDMWSVG-CIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDW 243

Query: 614 EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP---SSLFDLVDKCLT 670
                       P       SLP    P              V+P    S   L+ + LT
Sbjct: 244 ------------PR----DVSLPRGAFPPR-----GPRPVQSVVPEMEESGAQLLLEMLT 282

Query: 671 VNPRLRISAEDALKHEFF 688
            NP  RISA  AL+H + 
Sbjct: 283 FNPHKRISAFRALQHSYL 300

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 69.9 bits (172), Expect = 3e-13
 Identities = 48/165 (29%), Positives = 60/165 (36%), Gaps = 29/165 (17%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN-------E---LRML 250
             +    E G G YGTVY+AR  + G  VA+K                    E   LR L
Sbjct: 9   SRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRL 68

Query: 251 ERFGGKNFI----IKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID--------LSQLQW 298
           E F   N +    +              V EHV  D    L+  +D           ++ 
Sbjct: 69  EAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQD----LRTYLDKAPPPGLPAETIKD 124

Query: 299 YGYCLFRALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
                 R L  LH   IVHRD+KP N L +    VK  L DF LA
Sbjct: 125 LMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVK--LADFGLA 167

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 79.0 bits (195), Expect = 5e-16
 Identities = 37/186 (19%), Positives = 61/186 (32%), Gaps = 18/186 (9%)

Query: 186 NHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN 245
                  + +          +   G G +G V+R + K  G   A+K       +     
Sbjct: 43  TEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR---VE 99

Query: 246 ELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKE--IDLSQLQWY 299
           EL           I+   G  + G      +E ++         ++K+   +   +  +Y
Sbjct: 100 ELVACAGLSSPR-IVPLYGAVREGPWVNIFMELLEGGSLGQ---LIKQMGCLPEDRALYY 155

Query: 300 GYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDF----NLAMVGFDGSFNQA-T 354
                  L  LH + I+H DVK  N L S    +  L DF     L   G   S      
Sbjct: 156 LGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDY 215

Query: 355 LPGTKY 360
           +PGT+ 
Sbjct: 216 IPGTET 221

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 25/147 (17%), Positives = 40/147 (27%), Gaps = 44/147 (29%)

Query: 559 APEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDLWEVAK 617
           APEV+        K+DIWS+   +L+++ G  P+           IA             
Sbjct: 224 APEVVMGKPC-DAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIAS------------ 270

Query: 618 LHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-DLVDKCLTVNPRLR 676
                            +  I  P  C              + L    + + L   P  R
Sbjct: 271 -------------EPPPIREI--PPSC--------------APLTAQAIQEGLRKEPVHR 301

Query: 677 ISAEDALKHEFFAPCHEMLRKQKLLRQ 703
            SA +  +    A       K     +
Sbjct: 302 ASAMELRRKVGKALQEVGGLKSPWKGE 328

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 79.5 bits (196), Expect = 5e-16
 Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 29/182 (15%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVSNELRMLERFGGKNFI 259
           +++ +  G G    V+R R K  G + AIK                E  +L++   KN I
Sbjct: 11  WLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN-I 69

Query: 260 IKYEGCFKCGDSD--CFVLEH----------VKHDRPEVLKKEIDLSQLQWYGYCLFRAL 307
           +K     +   +     ++E            +      L +   L  L+     +   +
Sbjct: 70  VKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLR----DVVGGM 125

Query: 308 ASLHKQGIVHRDVKPGNFLFSCKA-----VKGYLIDFNLAMVGFDGSFNQATLPGT-KYV 361
             L + GIVHR++KPGN +           K  L DF  A    D      +L GT +Y+
Sbjct: 126 NHLRENGIVHRNIKPGNIMRVIGEDGQSVYK--LTDFGAARELEDDEQ-FVSLYGTEEYL 182

Query: 362 PP 363
            P
Sbjct: 183 HP 184

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 35/160 (21%)

Query: 553 GTKGFRAPEVLFR-------SQHQGPKLDIWSAGVTLLYLMIGRTPF--FGDPEQN---I 600
           GT+ +  P++  R        +  G  +D+WS GVT  +   G  PF  F  P +N   +
Sbjct: 177 GTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVM 236

Query: 601 KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS 660
             I   + S  +  V K  N    +  D           +P  C L       L      
Sbjct: 237 YKIITGKPSGAISGVQKAENGPIDWSGD-----------MPVSCSLSRGLQVLLT----- 280

Query: 661 LFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKL 700
              ++   L  +       +     +FFA   ++L +  +
Sbjct: 281 --PVLANILEADQEKCWGFD-----QFFAETSDILHRMVI 313

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 79.3 bits (196), Expect = 6e-16
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDLWEVA 616
           RAPE++ + +     +D+WSAG  +  +   +  F G      +  I ++ G+  + +V 
Sbjct: 200 RAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVV 259

Query: 617 KLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP---SSLFDLVDKCLTVNP 673
              +  +      Y   SL                 +  V+P       DL+ K L  NP
Sbjct: 260 MFSSPSAR----DYLRNSLSN----------VPARAWTAVVPTADPVALDLIAKMLEFNP 305

Query: 674 RLRISAEDALKHEFFAPCHE 693
           + RIS E AL+H +F    +
Sbjct: 306 QRRISTEQALRHPYFESLFD 325

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 63.9 bits (156), Expect = 5e-11
 Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 28/156 (17%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN-------------ELRMLERFGGK 256
            SG YG V       +G  VAIK      S     N             E+R+L  F   
Sbjct: 31  SSGSYGAVCAGVDS-EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHP 89

Query: 257 NFIIKYEGCFKCGDSDCF-----VLEHVKHDRPEVLK-KEIDLS--QLQWYGYCLFRALA 308
           N I+     F   +         V E ++ D  +V+  + I +S   +Q++ Y +   L 
Sbjct: 90  N-ILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLH 148

Query: 309 SLHKQGIVHRDVKPGNFLFS--CKAVKGYLIDFNLA 342
            LH+ G+VHRD+ PGN L +     +   + DFNLA
Sbjct: 149 VLHEAGVVHRDLHPGNILLADNND-IT--ICDFNLA 181

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 79.7 bits (197), Expect = 6e-16
 Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 39/189 (20%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC----------PHANASKHYVSNELRML 250
           + +I+ +  GSG  G V  A  +     VAI+                    V  E+ +L
Sbjct: 135 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEIL 194

Query: 251 ERFGGKNFIIKYEGCFKCGDSDCF-VLEHVKH----DRPEVLKK----EIDLSQL--QWY 299
           ++      IIK +  F     D + VLE ++     D+  V+      E        Q  
Sbjct: 195 KKLNHPC-IIKIKNFFD--AEDYYIVLELMEGGELFDK--VVGNKRLKEATCKLYFYQ-- 247

Query: 300 GYCLFRALASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQATL 355
              +  A+  LH+ GI+HRD+KP N L S +     +K  + DF  + +  + S  + TL
Sbjct: 248 ---MLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIK--ITDFGHSKILGETSLMR-TL 301

Query: 356 PGT-KYVPP 363
            GT  Y+ P
Sbjct: 302 CGTPTYLAP 310

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 48/213 (22%), Positives = 73/213 (34%), Gaps = 54/213 (25%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLII-FYL--LLGNGKQKKDGPCA 552
           LH NGI             DL    +LL ++     + I  F    +LG     +     
Sbjct: 255 LHENGII----------HRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRT--LC 302

Query: 553 GTKGFRAPEVLFRSQHQ--GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
           GT  + APEVL           +D WS GV L   + G  PF     Q            
Sbjct: 303 GTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ-----------V 351

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
            L +  ++ + + +F                 W +           +     DLV K L 
Sbjct: 352 SLKD--QITSGKYNFIP-------------EVWAE-----------VSEKALDLVKKLLV 385

Query: 671 VNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQ 703
           V+P+ R + E+AL+H +        + Q LL +
Sbjct: 386 VDPKARFTTEEALRHPWLQDEDMKRKFQDLLSE 418

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 77.7 bits (192), Expect = 7e-16
 Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 20/194 (10%)

Query: 186 NHNDDQTNAKVLPNFES-FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PHANASKH 241
           +H+  + N       +  FI + + GSG +G V+    ++ G    IK      +     
Sbjct: 6   HHSSGRENLYFQGTIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPME 65

Query: 242 YVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK----HDR-PEVLKKEIDLSQL 296
            +  E+ +L+     N IIK    F+   +   V+E  +     +R      +   LS+ 
Sbjct: 66  QIEAEIEVLKSLDHPN-IIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEG 124

Query: 297 QWYGYC--LFRALASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSF 350
                   +  ALA  H Q +VH+D+KP N LF   +    +K  +IDF LA + F    
Sbjct: 125 YVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIK--IIDFGLAEL-FKSDE 181

Query: 351 NQATLPGTK-YVPP 363
           +     GT  Y+ P
Sbjct: 182 HSTNAAGTALYMAP 195

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 41/171 (23%), Positives = 60/171 (35%), Gaps = 46/171 (26%)

Query: 521 ILLLTKLHPVPVLII-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWS 577
           IL        P+ II F L  L  + +   +   AGT  + APEV    +    K DIWS
Sbjct: 155 ILFQDTSPHSPIKIIDFGLAELFKSDEHSTN--AAGTALYMAPEVF--KRDVTFKCDIWS 210

Query: 578 AGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPP 637
           AGV + +L+ G  PF G   + ++         +             +  +         
Sbjct: 211 AGVVMYFLLTGCLPFTGTSLEEVQQ-KATYKEPN-------------YAVE--------C 248

Query: 638 INLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
             L                      DL+ + LT +P  R SA   L HE+F
Sbjct: 249 RPLTPQAV-----------------DLLKQMLTKDPERRPSAAQVLHHEWF 282

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 80.1 bits (198), Expect = 7e-16
 Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 37/191 (19%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---------------PHANASKHYVSN 245
           ES+    + GSG YG V   + KN  +  AIK                 +       + N
Sbjct: 36  ESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYN 95

Query: 246 ELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EIDLSQLQ 297
           E+ +L+     N IIK    F+       V E  +     ++  ++ +    E D + + 
Sbjct: 96  EISLLKSLDHPN-IIKLFDVFEDKKYFYLVTEFYEGGELFEQ--IINRHKFDECDAANI- 151

Query: 298 WYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQA 353
                +   +  LHK  IVHRD+KP N L   K     +K  ++DF L+   F   +   
Sbjct: 152 --MKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIK--IVDFGLSSF-FSKDYKLR 206

Query: 354 TLPGTK-YVPP 363
              GT  Y+ P
Sbjct: 207 DRLGTAYYIAP 217

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 77.4 bits (191), Expect = 5e-15
 Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 40/137 (29%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT  + APEVL   +    K D+WS GV +  L+ G  PF G  +Q+I      +G   
Sbjct: 209 LGTAYYIAPEVL--KKKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIK-KVEKG--- 262

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                     +  F                +W             I     +L+   LT 
Sbjct: 263 ----------KYYFDF-------------NDWKN-----------ISDEAKELIKLMLTY 288

Query: 672 NPRLRISAEDALKHEFF 688
           +   R +AE+AL   + 
Sbjct: 289 DYNKRCTAEEALNSRWI 305

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 78.4 bits (194), Expect = 7e-16
 Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 30/138 (21%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF-GDPEQN-IKDIAKLRG--SEDLW 613
           RAPEVL +S +    +D+WS G  +   M  R P F G  + + +  I  + G   E+ W
Sbjct: 186 RAPEVLLQSSY-ATPVDLWSVG-CIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDW 243

Query: 614 EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP---SSLFDLVDKCLT 670
                       P       +LP                  + +        DL+ KCLT
Sbjct: 244 ------------PR----DVALPRQAFHSK-----SAQPIEKFVTDIDELGKDLLLKCLT 282

Query: 671 VNPRLRISAEDALKHEFF 688
            NP  RISA  AL H +F
Sbjct: 283 FNPAKRISAYSALSHPYF 300

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 67.2 bits (165), Expect = 4e-12
 Identities = 47/170 (27%), Positives = 63/170 (37%), Gaps = 41/170 (24%)

Query: 201 ESFIVEEEEGSGGYGTVYRAR-RKNDGTVVAIKCPHANASKHYVSNE------------- 246
           + +    E G G YG V++AR  KN G  VA+K       +  V                
Sbjct: 11  QQYECVAEIGEGAYGKVFKARDLKNGGRFVALK-------RVRVQTGEEGMPLSTIREVA 63

Query: 247 -LRMLERFGGKNFI----IKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEID--------L 293
            LR LE F   N +    +              V EHV  D    L   +D         
Sbjct: 64  VLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQD----LTTYLDKVPEPGVPT 119

Query: 294 SQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
             ++   + L R L  LH   +VHRD+KP N L +    +K  L DF LA
Sbjct: 120 ETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIK--LADFGLA 167

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 77.6 bits (192), Expect = 8e-16
 Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 31/185 (16%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC--------PHANASKHYVSNELRMLER 252
           + + + EE GSG +  V + R+K  G   A K              S+  +  E+ +L  
Sbjct: 5   DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILRE 64

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EIDLSQL--QWYGYC 302
               N II     F+       +LE V      D   + +K    E + +Q   Q     
Sbjct: 65  IRHPN-IITLHDIFENKTDVVLILELVSGGELFDF--LAEKESLTEDEATQFLKQ----- 116

Query: 303 LFRALASLHKQGIVHRDVKPGNFLFSCKAVKGY---LIDFNLAMVGFDGSFNQATLPGT- 358
           +   +  LH + I H D+KP N +   K V      LIDF +A    +       + GT 
Sbjct: 117 ILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHK-IEAGNEFKNIFGTP 175

Query: 359 KYVPP 363
           ++V P
Sbjct: 176 EFVAP 180

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 49/171 (28%)

Query: 521 ILLLTKLHPVPVL-II-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIW 576
           I+LL K  P P + +I F +   +  G + K+    GT  F APE++      G + D+W
Sbjct: 139 IMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKN--IFGTPEFVAPEIVNYEPL-GLEADMW 195

Query: 577 SAGVTLLY-LMIGRTPFFGDPEQNI-KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKS 634
           S GV + Y L+ G +PF G+ +Q    +I     + D             F E       
Sbjct: 196 SIGV-ITYILLSGASPFLGETKQETLTNI--SAVNYD-------------FDE------- 232

Query: 635 LPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKH 685
                   +                   D + + L  +P+ R++   +L+H
Sbjct: 233 ------EYF-----------SNTSELAKDFIRRLLVKDPKRRMTIAQSLEH 266

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 47/268 (17%), Positives = 83/268 (30%), Gaps = 40/268 (14%)

Query: 116 RAVSPAAELPVTNRQLRKPSAKTKFLHKDGIDPKGPKLQASRHNKAFDAKEKKQGKRDQI 175
           RA      LP  NR+ R+   ++             +              + +G  +  
Sbjct: 21  RARREIRHLPNLNREQRRAFIRSL-------RDDPSQSANLLAEAKKLNDAQPKGTENLY 73

Query: 176 SRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-- 233
            + M  +                  + +  ++  G G    V R   +  G   A+K   
Sbjct: 74  FQSMGPEDELPDWAAAKEFY-----QKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIME 128

Query: 234 --------PHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH---- 281
                         +     E  +L +  G   II     ++       V + ++     
Sbjct: 129 VTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELF 188

Query: 282 DRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA-VKGYL 336
           D   + +K    E +   +      L  A++ LH   IVHRD+KP N L      ++  L
Sbjct: 189 DY--LTEKVALSEKETRSIM---RSLLEAVSFLHANNIVHRDLKPENILLDDNMQIR--L 241

Query: 337 IDFNLAMVGFDGSFNQATLPGT-KYVPP 363
            DF  +     G   +  L GT  Y+ P
Sbjct: 242 SDFGFSCHLEPGEKLR-ELCGTPGYLAP 268

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 45/142 (31%)

Query: 553 GTKGFRAPEVLFRSQHQ-----GPKLDIWSAGVTLLY-LMIGRTPFFGDPEQNIKDIAKL 606
           GT G+ APE+L  S  +     G ++D+W+ GV +L+ L+ G  PF+   +  +     +
Sbjct: 261 GTPGYLAPEILKCSMDETHPGYGKEVDLWACGV-ILFTLLAGSPPFWHRRQILMLR-MIM 318

Query: 607 RGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD 666
            G             +  F               PEW               S++ DL+ 
Sbjct: 319 EG-------------QYQFSS-------------PEWDD-----------RSSTVKDLIS 341

Query: 667 KCLTVNPRLRISAEDALKHEFF 688
           + L V+P  R++AE AL+H FF
Sbjct: 342 RLLQVDPEARLTAEQALQHPFF 363

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 19/144 (13%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDL 612
           T+ +RAPEV+         +DIWS G  +  ++ G+T F G D    +K+I K+ G+   
Sbjct: 188 TRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPA 247

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP---SSLFDLVDKCL 669
             V +L + E+      Y  K LP            ++ DF  ++        +L++K L
Sbjct: 248 EFVQRLQSDEAK----NYM-KGLPE----------LEKKDFASILTNASPLAVNLLEKML 292

Query: 670 TVNPRLRISAEDALKHEFFAPCHE 693
            ++   R++A +AL H +F   H+
Sbjct: 293 VLDAEQRVTAGEALAHPYFESLHD 316

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 60.4 bits (147), Expect = 8e-10
 Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 21/151 (13%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-----NELRMLERFGGKNFIIK 261
           +  GSG YG V  A     G  VAIK       +  +       ELR+L+    +N +I 
Sbjct: 31  QPVGSGAYGAVCSAVDGRTGAKVAIKK-LYRPFQSELFAKRAYRELRLLKHMRHEN-VIG 88

Query: 262 YEGCFK-CGDSDCF-----VLEHVKHDRPEVLKKEIDLS--QLQWYGYCLFRALASLHKQ 313
               F      D F     V+  +  D  +++K E  L   ++Q+  Y + + L  +H  
Sbjct: 89  LLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHE-KLGEDRIQFLVYQMLKGLRYIHAA 147

Query: 314 GIVHRDVKPGNFLFS--CKAVKGYLIDFNLA 342
           GI+HRD+KPGN   +  C+ +K  ++DF LA
Sbjct: 148 GIIHRDLKPGNLAVNEDCE-LK--ILDFGLA 175

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 24/180 (13%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-PHANAS---KHYVSNELRMLERFGGK 256
           E + V    G+G YG   + RRK+DG ++  K   + + +   K  + +E+ +L      
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65

Query: 257 NFIIKYEGCFKCGDSDCF--VLEHVKH-DRPEVLKKE------IDLSQLQWYGYCLFRAL 307
           N I++Y        +     V+E+ +  D   V+ K       +D   +      L  AL
Sbjct: 66  N-IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLAL 124

Query: 308 ASLHKQG-----IVHRDVKPGN-FLFSCKAVKGYLIDFNLAMVGFDGSFNQA-TLPGTKY 360
              H++      ++HRD+KP N FL   + VK  L DF LA +  +   + A T  GT Y
Sbjct: 125 KECHRRSDGGHTVLHRDLKPANVFLDGKQNVK--LGDFGLARI-LNHDTSFAKTFVGTPY 181

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 22/142 (15%), Positives = 37/142 (26%), Gaps = 46/142 (32%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
             GT  + +PE +        K DIWS G  L  L     PF                  
Sbjct: 176 FVGTPYYMSPEQM-NRMSYNEKSDIWSLGCLLYELCALMPPFTAF--------------- 219

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITK-RPDFL-EVIPSSLFDLVDKC 668
                                       +  E    I + +   +       L +++ + 
Sbjct: 220 ----------------------------SQKELAGKIREGKFRRIPYRYSDELNEIITRM 251

Query: 669 LTVNPRLRISAEDALKHEFFAP 690
           L +    R S E+ L++     
Sbjct: 252 LNLKDYHRPSVEEILENPLILE 273

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 31/185 (16%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC--------PHANASKHYVSNELRMLER 252
           + + + EE GSG +  V + R K+ G   A K               +  +  E+ +L +
Sbjct: 12  DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQ 71

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EIDLSQL--QWYGYC 302
               N II     ++       +LE V      D   + +K    E + +    Q     
Sbjct: 72  VLHPN-IITLHDVYENRTDVVLILELVSGGELFDF--LAQKESLSEEEATSFIKQ----- 123

Query: 303 LFRALASLHKQGIVHRDVKPGNFLFSCKAVKGY---LIDFNLAMVGFDGSFNQATLPGT- 358
           +   +  LH + I H D+KP N +   K +      LIDF LA    +       + GT 
Sbjct: 124 ILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE-IEDGVEFKNIFGTP 182

Query: 359 KYVPP 363
           ++V P
Sbjct: 183 EFVAP 187

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 49/176 (27%)

Query: 521 ILLLTKLHPVPVL-II-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIW 576
           I+LL K  P+P + +I F L   + +G + K+    GT  F APE++   +  G + D+W
Sbjct: 146 IMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKN--IFGTPEFVAPEIV-NYEPLGLEADMW 202

Query: 577 SAGVTLLY-LMIGRTPFFGDPEQNI-KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKS 634
           S GV + Y L+ G +PF GD +Q    +I     S D             F E       
Sbjct: 203 SIGV-ITYILLSGASPFLGDTKQETLANI--TAVSYD-------------FDE------- 239

Query: 635 LPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAP 690
                   +                   D + K L    R R++ ++AL+H +  P
Sbjct: 240 ------EFF-----------SQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITP 278

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 25/182 (13%)

Query: 198 PNFESF-IVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--VSNELRMLERFG 254
            +   +  +E   G G +G V  A +K      A K       +       E+ +++   
Sbjct: 5   GDINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLD 64

Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EIDLSQLQWYGYCLFRA 306
             N II+    F+       V+E        +R  V+ K    E D +++      +  A
Sbjct: 65  HPN-IIRLYETFEDNTDIYLVMELCTGGELFER--VVHKRVFRESDAARIM---KDVLSA 118

Query: 307 LASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQATLPGTK-YV 361
           +A  HK  + HRD+KP NFLF   +    +K  LIDF LA   F       T  GT  YV
Sbjct: 119 VAYCHKLNVAHRDLKPENFLFLTDSPDSPLK--LIDFGLAAR-FKPGKMMRTKVGTPYYV 175

Query: 362 PP 363
            P
Sbjct: 176 SP 177

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 43/172 (25%), Positives = 65/172 (37%), Gaps = 47/172 (27%)

Query: 521 ILLLTKLHPVPVLII-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWS 577
            L LT     P+ +I F L      GK  +     GT  + +P+VL      GP+ D WS
Sbjct: 137 FLFLTDSPDSPLKLIDFGLAARFKPGKMMRT--KVGTPYYVSPQVL--EGLYGPECDEWS 192

Query: 578 AGVTLLYLMIGRTPFFGDPEQNI-KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLP 636
           AGV +  L+ G  PF    +  +   I    G+               FPE         
Sbjct: 193 AGVMMYVLLCGYPPFSAPTDSEVMLKI--REGTFT-------------FPE--------- 228

Query: 637 PINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
                +W             +      L+ + LT +P+ RI++  AL+HE+F
Sbjct: 229 ----KDWLN-----------VSPQAESLIRRLLTKSPKQRITSLQALEHEWF 265

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 40/143 (27%), Positives = 53/143 (37%), Gaps = 43/143 (30%)

Query: 550 PCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAK--L 606
           PC  T  F APEVL R  +     DIWS GV LLY M+ G TPF   P+   ++I     
Sbjct: 180 PC-YTANFVAPEVLERQGY-DAACDIWSLGV-LLYTMLTGYTPFANGPDDTPEEILARIG 236

Query: 607 RGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD 666
            G             + S                  W             +  +  DLV 
Sbjct: 237 SG-------------KFSLSG-------------GYWNS-----------VSDTAKDLVS 259

Query: 667 KCLTVNPRLRISAEDALKHEFFA 689
           K L V+P  R++A   L+H +  
Sbjct: 260 KMLHVDPHQRLTAALVLRHPWIV 282

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 75.8 bits (187), Expect = 6e-15
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 23/178 (12%)

Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFI 259
            + + V+E+ G G Y    R   K      A+K    + SK   + E+ +L R+G    I
Sbjct: 21  TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKI--IDKSKRDPTEEIEILLRYGQHPNI 78

Query: 260 IKYEGCFKCGDSDCFVLEHVKH----DRPEVLKK----EIDLSQLQWYGYCLFRALASLH 311
           I  +  +  G     V E +K     D+  +L++    E + S +    + + + +  LH
Sbjct: 79  ITLKDVYDDGKYVYVVTELMKGGELLDK--ILRQKFFSEREASAVL---FTITKTVEYLH 133

Query: 312 KQGIVHRDVKPGNFLFSCKA-----VKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
            QG+VHRD+KP N L+  ++     ++  + DF  A      +    T   T  +V P
Sbjct: 134 AQGVVHRDLKPSNILYVDESGNPESIR--ICDFGFAKQLRAENGLLMTPCYTANFVAP 189

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 41/184 (22%), Positives = 68/184 (36%), Gaps = 29/184 (15%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-----------PHANASKHYVSNELRM 249
           E++  +E  G G    V R   K      A+K                  +     E+ +
Sbjct: 17  ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 76

Query: 250 LERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH----DRPEVLKK----EIDLSQLQWYGY 301
           L +  G   II+ +  ++       V + +K     D   + +K    E +  ++     
Sbjct: 77  LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDY--LTEKVTLSEKETRKIM---R 131

Query: 302 CLFRALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGT-K 359
            L   + +LHK  IVHRD+KP N L      +K  L DF  +     G   +  + GT  
Sbjct: 132 ALLEVICALHKLNIVHRDLKPENILLDDDMNIK--LTDFGFSCQLDPGEKLR-EVCGTPS 188

Query: 360 YVPP 363
           Y+ P
Sbjct: 189 YLAP 192

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 43/141 (30%)

Query: 553 GTKGFRAPEVLFRSQHQ-----GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLR 607
           GT  + APE++  S +      G ++D+WS GV +  L+ G  PF+   +  +     + 
Sbjct: 185 GTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLR-MIMS 243

Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK 667
           G                F               PEW                ++ DLV +
Sbjct: 244 G-------------NYQFGS-------------PEWDD-----------YSDTVKDLVSR 266

Query: 668 CLTVNPRLRISAEDALKHEFF 688
            L V P+ R +AE+AL H FF
Sbjct: 267 FLVVQPQKRYTAEEALAHPFF 287

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 76.5 bits (189), Expect = 3e-15
 Identities = 36/182 (19%), Positives = 69/182 (37%), Gaps = 21/182 (11%)

Query: 199 NFESF--IVEEEEGSGGYGTVYRARRKNDGTVVAIKC----PHANASKHYVSNELRMLER 252
           NF +F  +  +E G G +  V +   K+ G   A K           +  + +E+ +LE 
Sbjct: 25  NFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLEL 84

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYC--LFRA 306
                 +I     ++       +LE+           + +    +S+         +   
Sbjct: 85  AKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLC-LPELAEMVSENDVIRLIKQILEG 143

Query: 307 LASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQATLPGT-KYV 361
           +  LH+  IVH D+KP N L S       +K  ++DF ++      +     + GT +Y+
Sbjct: 144 VYYLHQNNIVHLDLKPQNILLSSIYPLGDIK--IVDFGMSRK-IGHACELREIMGTPEYL 200

Query: 362 PP 363
            P
Sbjct: 201 AP 202

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 69.6 bits (171), Expect = 7e-13
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 48/170 (28%)

Query: 521 ILLLTKLHPVPVLII-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWS 577
           ILL +      + I+ F +   +G+  + ++    GT  + APE+L          D+W+
Sbjct: 162 ILLSSIYPLGDIKIVDFGMSRKIGHACELRE--IMGTPEYLAPEILNYDPI-TTATDMWN 218

Query: 578 AGVTLLY-LMIGRTPFFGDPEQNI-KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSL 635
            G+ + Y L+   +PF G+  Q    +I   + + D             + E        
Sbjct: 219 IGI-IAYMLLTHTSPFVGEDNQETYLNI--SQVNVD-------------YSE-------- 254

Query: 636 PPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKH 685
                  +             +     D +   L  NP  R +AE  L H
Sbjct: 255 -----ETF-----------SSVSQLATDFIQSLLVKNPEKRPTAEICLSH 288

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 38/154 (24%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVSNELRMLERFGGKN 257
           + + ++E  GSG    V  A        VAIK         S   +  E++ + +    N
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74

Query: 258 FIIKYEGCFKCGDSDCFVLEH---------VKHDRPEVLKKEIDLSQLQWYGYC--LFRA 306
            I+ Y   F   D    V++          +KH   +   K   L +         +   
Sbjct: 75  -IVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEG 133

Query: 307 LASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDF 339
           L  LHK G +HRDVK GN L     +V+  + DF
Sbjct: 134 LEYLHKNGQIHRDVKAGNILLGEDGSVQ--IADF 165

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 34/131 (25%)

Query: 559 APEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKL 618
           APEV+ + +    K DIWS G+T + L  G  P+             ++           
Sbjct: 194 APEVMEQVRGYDFKADIWSFGITAIELATGAAPYH--------KYPPMKV---------- 235

Query: 619 HNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-DLVDKCLTVNPRLRI 677
                     L       P +L    +       +        F  ++  CL  +P  R 
Sbjct: 236 ----------LMLTLQNDPPSLETGVQDKEMLKKY-----GKSFRKMISLCLQKDPEKRP 280

Query: 678 SAEDALKHEFF 688
           +A + L+H+FF
Sbjct: 281 TAAELLRHKFF 291

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 42/185 (22%), Positives = 69/185 (37%), Gaps = 31/185 (16%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC--------PHANASKHYVSNELRMLER 252
           + +   EE GSG +  V + R K+ G   A K              S+  +  E+ +L+ 
Sbjct: 11  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 70

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EIDLSQL--QWYGYC 302
               N +I     ++       +LE V      D   + +K    E + ++   Q     
Sbjct: 71  IQHPN-VITLHEVYENKTDVILILELVAGGELFDF--LAEKESLTEEEATEFLKQ----- 122

Query: 303 LFRALASLHKQGIVHRDVKPGNFLFSCKAVKGY---LIDFNLAMVGFDGSFNQATLPGTK 359
           +   +  LH   I H D+KP N +   + V      +IDF LA    D       + GT 
Sbjct: 123 ILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK-IDFGNEFKNIFGTP 181

Query: 360 -YVPP 363
            +V P
Sbjct: 182 EFVAP 186

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 49/171 (28%)

Query: 521 ILLLTKLHPVPVL-II-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIW 576
           I+LL +  P P + II F L   +  G + K+    GT  F APE++      G + D+W
Sbjct: 145 IMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKN--IFGTPEFVAPEIVNYEPL-GLEADMW 201

Query: 577 SAGVTLLY-LMIGRTPFFGDPEQNI-KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKS 634
           S GV + Y L+ G +PF GD +Q    ++     + +             F +       
Sbjct: 202 SIGV-ITYILLSGASPFLGDTKQETLANV--SAVNYE-------------FED------- 238

Query: 635 LPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKH 685
                   +               +   D + + L  +P+ R++ +D+L+H
Sbjct: 239 ------EYF-----------SNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 76.6 bits (189), Expect = 5e-15
 Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 25/147 (17%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGS--- 609
           T+ +RAPE++  S+     +DIWS G  L  ++  R  F G      +  I  + GS   
Sbjct: 194 TRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQ 253

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS---LFDLVD 666
           EDL  +  L  R        Y   SLP             +  +  + P++     DL+D
Sbjct: 254 EDLNCIINLKARN-------YL-LSLPH----------KNKVPWNRLFPNADSKALDLLD 295

Query: 667 KCLTVNPRLRISAEDALKHEFFAPCHE 693
           K LT NP  RI  E AL H +    ++
Sbjct: 296 KMLTFNPHKRIEVEQALAHPYLEQYYD 322

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 23/166 (13%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-----NELRMLERFGGKNFIIKYEG 264
           G G YG V  A    +   VAIK    +  +H         E+++L RF  +N II    
Sbjct: 36  GEGAYGMVCSAYDNLNKVRVAIK--KISPFEHQTYCQRTLREIKILLRFRHEN-IIGIND 92

Query: 265 CFKCGDSDCF-----VLEHVKHDRPEVLKKEIDLS--QLQWYGYCLFRALASLHKQGIVH 317
             +    +       V + ++ D  ++LK +  LS   + ++ Y + R L  +H   ++H
Sbjct: 93  IIRAPTIEQMKDVYIVQDLMETDLYKLLKTQ-HLSNDHICYFLYQILRGLKYIHSANVLH 151

Query: 318 RDVKPGNFLF--SCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYV 361
           RD+KP N L   +C  +K  + DF LA V      +   L  T+YV
Sbjct: 152 RDLKPSNLLLNTTCD-LK--ICDFGLARVADPDHDHTGFL--TEYV 192

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 38/173 (21%)

Query: 521 ILLLTKLHPVPVLII---FYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWS 577
           +L   +   + + II   F  L     Q    PC  T  + APE+L ++ +     D+WS
Sbjct: 137 LLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPC-FTLHYAAPELLNQNGY-DESCDLWS 194

Query: 578 AGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLP 636
            GV +LY M+ G+ PF                + ++ +  K+   + SF           
Sbjct: 195 LGV-ILYTMLSGQVPFQSHDRSLTCTS-----AVEIMK--KIKKGDFSFEG--------- 237

Query: 637 PINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFA 689
                 W             +     DL+   LTV+P  R+       +E+  
Sbjct: 238 ----EAWKN-----------VSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQ 275

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 75.0 bits (185), Expect = 9e-15
 Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 21/176 (11%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII 260
           +  + ++  G G +    +   K      A+K   +   +     E+  L+   G   I+
Sbjct: 11  DLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKII-SKRMEANTQKEITALKLCEGHPNIV 69

Query: 261 KYEGCFKCGDSDCFVLEHVK----HDRPEVLKK----EIDLSQLQWYGYCLFRALASLHK 312
           K    F        V+E +      +R  + KK    E + S +      L  A++ +H 
Sbjct: 70  KLHEVFHDQLHTFLVMELLNGGELFER--IKKKKHFSETEASYIM---RKLVSAVSHMHD 124

Query: 313 QGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
            G+VHRD+KP N LF+ +     +K  +IDF  A +    +    T   T  Y  P
Sbjct: 125 VGVVHRDLKPENLLFTDENDNLEIK--IIDFGFARLKPPDNQPLKTPCFTLHYAAP 178

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 76.7 bits (189), Expect = 6e-15
 Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 42/143 (29%)

Query: 552 AGTKGFRAPEVLFRSQHQ------GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK 605
           +GT G+RAPE+L  S +          +DI+S G    Y++      FGD      +I +
Sbjct: 193 SGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNIIR 252

Query: 606 LRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLV 665
                                       SL  +                 +I  +  DL+
Sbjct: 253 -------------------------GIFSLDEMKCLHD----------RSLIAEAT-DLI 276

Query: 666 DKCLTVNPRLRISAEDALKHEFF 688
            + +  +P  R +A   L+H  F
Sbjct: 277 SQMIDHDPLKRPTAMKVLRHPLF 299

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 47/205 (22%), Positives = 66/205 (32%), Gaps = 43/205 (20%)

Query: 195 KVLPNFES-----FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRM 249
             +PNFE       + E+  G G  GTV        G  VA+K             E+++
Sbjct: 4   ANIPNFEQSLKNLVVSEKILGYGSSGTVVFQGSF-QGRPVAVKRMLI-DFCDIALMEIKL 61

Query: 250 LERFGGKNFIIKYEGCFKCGDSDCFVLE------------HVKHDRPEVLKKEIDLSQL- 296
           L        +I+Y             LE                D    L+KE +   L 
Sbjct: 62  LTESDDHPNVIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLL 121

Query: 297 -QWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGY------------LIDFNLA- 342
            Q     +   +A LH   I+HRD+KP N L S  +                + DF L  
Sbjct: 122 RQ-----IASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCK 176

Query: 343 -MVGFDGSF--NQATLPGTK-YVPP 363
            +     SF  N     GT  +  P
Sbjct: 177 KLDSGQSSFRTNLNNPSGTSGWRAP 201

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 77.0 bits (189), Expect = 6e-15
 Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 17/151 (11%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKY 262
           F +  + GSG +G +Y          VAIK  +       +  E ++     G   I   
Sbjct: 9   FRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNV 68

Query: 263 EGCFKCGDSDCFV-------LEHV--KHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQ 313
                 GD +  V       LE +     R   LK  + L         +   +  +H +
Sbjct: 69  RWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLML------ADQMINRVEFVHSK 122

Query: 314 GIVHRDVKPGNFLF--SCKAVKGYLIDFNLA 342
             +HRD+KP NFL     +A + Y+IDF LA
Sbjct: 123 SFLHRDIKPDNFLMGLGRRANQVYIIDFGLA 153

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 35/151 (23%), Positives = 55/151 (36%), Gaps = 14/151 (9%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS---NELRMLERFGGKN 257
           E      E G G YG+V +   K  G ++A+K   +   +        +L ++ R     
Sbjct: 22  EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCP 81

Query: 258 FIIKYEGCFKCGDSDCFVLE-------HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
           +I+++ G           +E               VL   I    L        +AL  L
Sbjct: 82  YIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHL 141

Query: 311 HKQG-IVHRDVKPGNFLFSCK-AVKGYLIDF 339
            +   I+HRD+KP N L      +K  L DF
Sbjct: 142 KENLKIIHRDIKPSNILLDRSGNIK--LCDF 170

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 41/141 (29%)

Query: 552 AGTKGFRAPEVLFRSQHQGP---KLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRG 608
           AG + + APE +  S  +     + D+WS G+TL  L  GR P+                
Sbjct: 186 AGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPY---------------- 229

Query: 609 SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-DLVDK 667
                   K ++      + L       P  L       ++  +F     S  F + V+ 
Sbjct: 230 -------PKWNS----VFDQLTQVVKGDPPQLSN-----SEEREF-----SPSFINFVNL 268

Query: 668 CLTVNPRLRISAEDALKHEFF 688
           CLT +   R   ++ LKH F 
Sbjct: 269 CLTKDESKRPKYKELLKHPFI 289

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 39/189 (20%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC----------PHANASKHYVSNELRML 250
           + +I+ +  GSG  G V  A  +     VAIK                    V  E+ +L
Sbjct: 10  DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEIL 69

Query: 251 ERFGGKNFIIKYEGCFKCGDSDCF-VLEHVKH----DRPEVLKK----EIDLSQL--QWY 299
           ++      IIK +  F     D + VLE ++     D+  V+      E        Q  
Sbjct: 70  KKLNHPC-IIKIKNFFD--AEDYYIVLELMEGGELFDK--VVGNKRLKEATCKLYFYQ-- 122

Query: 300 GYCLFRALASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQATL 355
              +  A+  LH+ GI+HRD+KP N L S +     +K  + DF  + +  + S  + TL
Sbjct: 123 ---MLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIK--ITDFGHSKILGETSLMR-TL 176

Query: 356 PGT-KYVPP 363
            GT  Y+ P
Sbjct: 177 CGTPTYLAP 185

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 41/196 (20%), Positives = 63/196 (32%), Gaps = 48/196 (24%)

Query: 521 ILLLTKLHPVPVLII-FYL--LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQ--GPKLDI 575
           +LL ++     + I  F    +LG     +     GT  + APEVL           +D 
Sbjct: 145 VLLSSQEEDCLIKITDFGHSKILGETSLMRT--LCGTPTYLAPEVLVSVGTAGYNRAVDC 202

Query: 576 WSAGVTLLYLMIGRTPFFGDPEQNIKDIAK--LRGSEDLWEVAKLHNRESSFPEDLYAAK 633
           WS GV L   + G  PF     Q    +      G  +             F        
Sbjct: 203 WSLGVILFICLSGYPPFSEHRTQ--VSLKDQITSGKYN-------------FIP------ 241

Query: 634 SLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE 693
                    W +           +     DLV K L V+P+ R + E+AL+H +      
Sbjct: 242 -------EVWAE-----------VSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDM 283

Query: 694 MLRKQKLLRQGSSIDN 709
             + Q LL + +    
Sbjct: 284 KRKFQDLLSEENESTA 299

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 75.0 bits (185), Expect = 7e-15
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 10/146 (6%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC--PHANASKHYVSNELRMLERFGGKNF 258
           E + +  E G G +G VY+A+ K  G + A K     +         E+ +L        
Sbjct: 19  EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPY- 77

Query: 259 IIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQG 314
           I+K  G +        ++E             L + +   Q+Q     +  AL  LH + 
Sbjct: 78  IVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKR 137

Query: 315 IVHRDVKPGNFLFSCKA-VKGYLIDF 339
           I+HRD+K GN L + +  ++  L DF
Sbjct: 138 IIHRDLKAGNVLMTLEGDIR--LADF 161

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 34/136 (25%), Positives = 44/136 (32%), Gaps = 47/136 (34%)

Query: 559 APEVLFRSQHQ----GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWE 614
           APEV+     +      K DIWS G+TL+ +     P          ++  +R       
Sbjct: 185 APEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHH--------ELNPMRV------ 230

Query: 615 VAKLHNRESSFPEDLYA-AKSLPPINLPEWCKLITKRPDFLEVIPSSLF-DLVDKCLTVN 672
                         L   AKS PP        L    P       S  F D +   L  N
Sbjct: 231 --------------LLKIAKSDPP-------TL--LTPSKW----SVEFRDFLKIALDKN 263

Query: 673 PRLRISAEDALKHEFF 688
           P  R SA   L+H F 
Sbjct: 264 PETRPSAAQLLEHPFV 279

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 76.2 bits (187), Expect = 7e-15
 Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 46/195 (23%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANA--------------------SKHYVSNELRM 249
           G         A  +  G    +  P+                              + ++
Sbjct: 87  GQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKV 146

Query: 250 LERFGGKNFIIKYEGCFKCGD-----------SDCFVLEHVKHDRPEVLKKEIDLSQLQ- 297
             RF     ++K     K              S  F+   ++ +     +  +  S    
Sbjct: 147 HLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHK 206

Query: 298 --------WYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLAMVGFDG 348
                        + R LASLH  G+VH  ++P + +   +  V   L  F   +     
Sbjct: 207 SLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVF--LTGFEHLVRDGAS 264

Query: 349 SFNQATLPGTKYVPP 363
           +    +  G  + PP
Sbjct: 265 AV---SPIGRGFAPP 276

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 17/152 (11%), Positives = 32/152 (21%), Gaps = 50/152 (32%)

Query: 549 GPCAGTKGFRAPEVLFRSQHQ----GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIA 604
           G         A  +L   QH         D W+ G+ + ++     P   D         
Sbjct: 270 GRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDA-------- 321

Query: 605 KLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL 664
                                             N+P+  +                  L
Sbjct: 322 ---------------------ALGGSEWIFRSCKNIPQPVR-----------------AL 343

Query: 665 VDKCLTVNPRLRISAEDALKHEFFAPCHEMLR 696
           ++  L      R+    A++   +      L 
Sbjct: 344 LEGFLRYPKEDRLLPLQAMETPEYEQLRTELS 375

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 76.4 bits (188), Expect = 8e-15
 Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 25/208 (12%)

Query: 155 ASRHNKAFDAKEKKQGKRDQISRIMALKATGNHNDDQTNAKVLPNFESFIVE------EE 208
            S H  A   +     +          +    H+  +  A +      + +         
Sbjct: 1   GSSHEAAAAQQHNSGTQHTVSGSQQEGQQRKQHHSSKPTASMPRPHSDWQIPDRYEIRHL 60

Query: 209 EGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-----NELRMLERFGGKNFIIKYE 263
            G+G YG V  A  K +  VVAIK       +  +       E+ +L R    + ++K  
Sbjct: 61  IGTGSYGHVCEAYDKLEKRVVAIKK-ILRVFEDLIDCKRILREIAILNRLNHDH-VVKVL 118

Query: 264 GCFKCGDSDCF-----VLEHVKHDRPEVLKKEIDLS--QLQWYGYCLFRALASLHKQGIV 316
                 D + F     VLE    D  ++ +  + L+   ++   Y L   +  +H  GI+
Sbjct: 119 DIVIPKDVEKFDELYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGIL 178

Query: 317 HRDVKPGNFLF--SCKAVKGYLIDFNLA 342
           HRD+KP N L    C  VK  + DF LA
Sbjct: 179 HRDLKPANCLVNQDCS-VK--VCDFGLA 203

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 67.5 bits (165), Expect = 5e-12
 Identities = 32/159 (20%), Positives = 51/159 (32%), Gaps = 26/159 (16%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAG----------VTLLYLMIGRTPFF-GDPEQNIKDIAKL 606
           RAPE++   ++    +D+WS G             +     R P F G     +    K 
Sbjct: 250 RAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKA 309

Query: 607 RGSEDLWEVAKLHNRESSF-------PEDLYAAKSLPPINLPEWCKLITKRP--DFLEVI 657
                             F        ED+ A +     +   + ++  KR   D  E  
Sbjct: 310 GNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKE---DAKRYIRIFPKREGTDLAERF 366

Query: 658 PS---SLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE 693
           P+       L+ + L  NP  RI+  + L H FF     
Sbjct: 367 PASSADAIHLLKRMLVFNPNKRITINECLAHPFFKEVRI 405

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 12/168 (7%)

Query: 180 ALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS 239
           + K TG         +            E GSG  G V++ R +  G V+A+K    + +
Sbjct: 6   SGKQTGYLTIGGQRYQAEI--NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGN 63

Query: 240 KHYVSN---ELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH---VKHDRPEVLKKEIDL 293
           K        +L ++ +     +I++  G F         +E          + ++  I  
Sbjct: 64  KEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGTCAEKLKKRMQGPIPE 123

Query: 294 SQLQWYGYCLFRALASLH-KQGIVHRDVKPGNFLFSCK-AVKGYLIDF 339
             L      + +AL  L  K G++HRDVKP N L   +  +K  L DF
Sbjct: 124 RILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIK--LCDF 169

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 32/142 (22%), Positives = 46/142 (32%), Gaps = 44/142 (30%)

Query: 552 AGTKGFRAPEVLFRSQHQGP----KLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLR 607
           AG   + APE +       P    + D+WS G++L+ L  G+ P+              +
Sbjct: 185 AGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPY--------------K 230

Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-DLVD 666
             +  +EV             L       P  LP           F     S  F   V 
Sbjct: 231 NCKTDFEV-------------LTKVLQEEPPLLPG-------HMGF-----SGDFQSFVK 265

Query: 667 KCLTVNPRLRISAEDALKHEFF 688
            CLT + R R      L+H F 
Sbjct: 266 DCLTKDHRKRPKYNKLLEHSFI 287

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 75.4 bits (185), Expect = 1e-14
 Identities = 29/196 (14%), Positives = 53/196 (27%), Gaps = 48/196 (24%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPH-----------------------------ANASK 240
           G         A  +  G    +  P+                               A  
Sbjct: 82  GQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKV 141

Query: 241 HYVSNELRMLERFGGKNFIIKYEGCFKCGD--SDCFVLEHVKHDRPEVLKKEIDLSQLQ- 297
           H        L +   K  +I+     +     S  F+   ++ +     +  +  S    
Sbjct: 142 HLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHK 201

Query: 298 ----WYGYCLFR----ALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDG 348
                    L       LASLH  G+VH  ++P + +   +  V   L  F   +   DG
Sbjct: 202 SLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVF--LTGFEHLV--RDG 257

Query: 349 SFNQATLPGTK-YVPP 363
           +        ++ + PP
Sbjct: 258 AR--VVSSVSRGFEPP 271

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 70.4 bits (172), Expect = 5e-13
 Identities = 17/156 (10%), Positives = 36/156 (23%), Gaps = 56/156 (35%)

Query: 551 CAGTKGFRAPEVLFRSQHQ----------GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNI 600
            + ++GF  PE+  R                  D W+ G+ + ++     P   D     
Sbjct: 262 SSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGG 321

Query: 601 KDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS 660
                            +                    N+P+  +               
Sbjct: 322 --------------SEWIFRS---------------CKNIPQPVR--------------- 337

Query: 661 LFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLR 696
              L++  L      R+    A++   +      L 
Sbjct: 338 --ALLEGFLRYPKEDRLLPLQAMETPEYEQLRTELS 371

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 23/156 (14%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-CPHANASKHYVSNELRMLERFGGKNFI 259
             F + E  G+G YG VY+ R    G + AIK        +  +  E+ ML+++     I
Sbjct: 24  GIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNI 83

Query: 260 IKYEGCFKCGDSDC------FVLEH---------VKHDRPEVLKKEIDLSQLQWYGYCLF 304
             Y G F   +          V+E          +K+ +   LK+E     + +    + 
Sbjct: 84  ATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEE----WIAYICREIL 139

Query: 305 RALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDF 339
           R L+ LH+  ++HRD+K  N L +  A VK  L+DF
Sbjct: 140 RGLSHLHQHKVIHRDIKGQNVLLTENAEVK--LVDF 173

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 48/136 (35%)

Query: 559 APEVLFRSQHQ----GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWE 614
           APEV+   ++       K D+WS G+T + +  G  P          D+  +R       
Sbjct: 197 APEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLC--------DMHPMRA------ 242

Query: 615 VAKLHNRESSFPEDLYA-AKSLPP-INLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
                         L+   ++  P +   +W K                   ++ CL  N
Sbjct: 243 --------------LFLIPRNPAPRLKSKKWSK--------------KFQSFIESCLVKN 274

Query: 673 PRLRISAEDALKHEFF 688
              R + E  +KH F 
Sbjct: 275 HSQRPATEQLMKHPFI 290

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 13/146 (8%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDL 612
           T+ +RAPEV+         +DIWS G  +  ++ G   F G D       + +  G+   
Sbjct: 189 TRYYRAPEVIL-GMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCP 247

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-----DLVDK 667
             + KL     ++       ++ P      + KL        +   + L      DL+ K
Sbjct: 248 EFMKKLQPTVRTY------VENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSK 301

Query: 668 CLTVNPRLRISAEDALKHEFFAPCHE 693
            L ++   RIS ++AL+H +    ++
Sbjct: 302 MLVIDASKRISVDEALQHPYINVWYD 327

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 66.6 bits (163), Expect = 8e-12
 Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 18/146 (12%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-----NELRMLERFGGKNFIIKYEG 264
           GSG  G V  A        VAIK   +   ++         EL +++    KN II    
Sbjct: 34  GSGAQGIVCAAYDAILERNVAIKK-LSRPFQNQTHAKRAYRELVLMKCVNHKN-IIGLLN 91

Query: 265 CFK-CGDSDCF-----VLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHR 318
            F      + F     V+E +  +  +V++ E+D  ++ +  Y +   +  LH  GI+HR
Sbjct: 92  VFTPQKSLEEFQDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHR 151

Query: 319 DVKPGNFLF--SCKAVKGYLIDFNLA 342
           D+KP N +    C  +K  ++DF LA
Sbjct: 152 DLKPSNIVVKSDCT-LK--ILDFGLA 174

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGS---EDLW 613
           RAPE+L  S      +D+WS G  L  ++ G+  F G      ++ I  +      ED+ 
Sbjct: 197 RAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGVIDFPSNEDVE 256

Query: 614 EVAKLHNRE--SSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
            +     +    S  E +   +S       +W  L+ K     +    +L DL+DK L  
Sbjct: 257 SIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEAL-DLLDKLLQF 315

Query: 672 NPRLRISAEDALKHEFFAPCHE 693
           NP  RISA DALKH F +  H 
Sbjct: 316 NPNKRISANDALKHPFVSIFHN 337

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 16/144 (11%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-----NELRMLERFGGKNFIIKYEG 264
           G G YG V+++  +  G VVA+K    +A ++         E+ +L    G   I+    
Sbjct: 18  GKGAYGIVWKSIDRRTGEVVAVKKIF-DAFQNSTDAQRTFREIMILTELSGHENIVNLLN 76

Query: 265 CFKC-GDSDC-FVLEHVKHDRPEVLKKEIDLS--QLQWYGYCLFRALASLHKQGIVHRDV 320
             +   D D   V ++++ D   V++  I L     Q+  Y L + +  LH  G++HRD+
Sbjct: 77  VLRADNDRDVYLVFDYMETDLHAVIRANI-LEPVHKQYVVYQLIKVIKYLHSGGLLHRDM 135

Query: 321 KPGNFLFS--CKAVKGYLIDFNLA 342
           KP N L +  C  VK  + DF L+
Sbjct: 136 KPSNILLNAECH-VK--VADFGLS 156

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 39/175 (22%), Positives = 61/175 (34%), Gaps = 25/175 (14%)

Query: 185 GNHNDDQTNAKVLPNFESF-IVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYV 243
           G H       K     + + +  +  G G  G V +   K      A+K           
Sbjct: 1   GPHVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPK---A 57

Query: 244 SNELRMLERFGGKNFIIK----YEGCFKCGDSDCFVLEHVK--------HDRPEVLKKEI 291
             E+ +  R      I++    YE  +        V+E +          DR +    E 
Sbjct: 58  RREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTER 117

Query: 292 DLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLA 342
           + S++      +  A+  LH   I HRDVKP N L++ K     +K  L DF  A
Sbjct: 118 EASEIM---KSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILK--LTDFGFA 167

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 45/134 (33%)

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNI-KDIAK--LRGSED 611
           GF A E     +      D+WS GV ++Y+++ G  PF+ +    I   +      G  +
Sbjct: 165 GF-AKETT--GEKYDKSCDMWSLGV-IMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYE 220

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                        FP              PEW +           +   +  L+   L  
Sbjct: 221 -------------FPN-------------PEWSE-----------VSEEVKMLIRNLLKT 243

Query: 672 NPRLRISAEDALKH 685
            P  R++  + + H
Sbjct: 244 EPTQRMTITEFMNH 257

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 18/171 (10%)

Query: 179 MALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PH 235
           MA     +      N K  P  E F   E+ G G +G V++        VVAIK      
Sbjct: 1   MAHSPVQSGLPGMQNLKADPE-ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEE 59

Query: 236 ANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH-----VKHDRPEVLKKE 290
           A      +  E+ +L +      + KY G +        ++E+            +L+  
Sbjct: 60  AEDEIEDIQQEITVLSQCDSPY-VTKYYGSYLKDTKLWIIMEYLGGGSALD----LLEPG 114

Query: 291 -IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDF 339
            +D +Q+      + + L  LH +  +HRD+K  N L S    VK  L DF
Sbjct: 115 PLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVK--LADF 163

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 46/132 (34%)

Query: 559 APEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKL 618
           APEV+ +S +   K DIWS G+T + L  G  P                           
Sbjct: 187 APEVIKQSAY-DSKADIWSLGITAIELARGEPPHS------------------------- 220

Query: 619 HNRESSFPEDLYAAKSLPPINLPEWCKLITKR-PDFLEVIPSSLF-DLVDKCLTVNPRLR 676
                    +L+  K L          LI K  P  LE   S    + V+ CL   P  R
Sbjct: 221 ---------ELHPMKVL---------FLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFR 262

Query: 677 ISAEDALKHEFF 688
            +A++ LKH+F 
Sbjct: 263 PTAKELLKHKFI 274

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 74.2 bits (183), Expect = 2e-14
 Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 26/144 (18%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGS----EDL 612
           RAPEV+  S      +D+WS G  L  L + R  F G D    +  I  + G+     DL
Sbjct: 189 RAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDL 248

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS---LFDLVDKCL 669
             +     RE       Y  KSLP                  ++ P       DL+ + L
Sbjct: 249 RCIESPRARE-------YI-KSLPMY----------PAAPLEKMFPRVNPKGIDLLQRML 290

Query: 670 TVNPRLRISAEDALKHEFFAPCHE 693
             +P  RI+A++AL+H +    H+
Sbjct: 291 VFDPAKRITAKEALEHPYLQTYHD 314

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 26/171 (15%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-----NELRMLERFGGKNFIIKYEG 264
           G G YG V  A  K  G +VAIK          +       E+++L+ F  +N II    
Sbjct: 20  GEGAYGVVCSATHKPTGEIVAIK--KIEPFDKPLFALRTLREIKILKHFKHEN-IITIFN 76

Query: 265 CFKCGDSDCF-----VLEHVKHDRPEVLKKEIDLS--QLQWYGYCLFRALASLHKQGIVH 317
             +    + F     + E ++ D   V+  ++ LS   +Q++ Y   RA+  LH   ++H
Sbjct: 77  IQRPDSFENFNEVYIIQELMQTDLHRVISTQM-LSDDHIQYFIYQTLRAVKVLHGSNVIH 135

Query: 318 RDVKPGNFLFS--CKAVKGYLIDFNLAMVGFDGSFNQATLPG-----TKYV 361
           RD+KP N L +  C  +K  + DF LA +  + + + +   G      ++V
Sbjct: 136 RDLKPSNLLINSNCD-LK--VCDFGLARIIDESAADNSEPTGQQSGMVEFV 183

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 47/171 (27%)

Query: 521 ILLLTKLHPVPVLII-FYLLLGNGKQKKDG----PCAGTKGFRAPEVLFRSQHQGPKLDI 575
           +L  +K     + +  F    G  K+        PC  T  + APEVL   ++     D+
Sbjct: 159 LLYTSKEKDAVLKLTDF----GFAKETTQNALQTPC-YTPYYVAPEVLGPEKY-DKSCDM 212

Query: 576 WSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKS 634
           WS GV ++Y+++ G  PF+ +  Q I    K           ++   +  FP        
Sbjct: 213 WSLGV-IMYILLCGFPPFYSNTGQAISPGMK----------RRIRLGQYGFPN------- 254

Query: 635 LPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKH 685
                 PEW +           +      L+   L  +P  R++    + H
Sbjct: 255 ------PEWSE-----------VSEDAKQLIRLLLKTDPTERLTITQFMNH 288

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 27/177 (15%)

Query: 204 IVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIK-- 261
           + ++  G G  G V     +  G   A+K             E+    +  G   I+   
Sbjct: 32  LSKQVLGLGVNGKVLECFHRRTGQKCALKLL---YDSPKARQEVDHHWQASGGPHIVCIL 88

Query: 262 --YEGCFKCGDSDCFVLEHVK--------HDRPEVLKKEIDLSQLQWYGYCLFRALASLH 311
             YE           ++E ++         +R +    E + +++      +  A+  LH
Sbjct: 89  DVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIM---RDIGTAIQFLH 145

Query: 312 KQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
              I HRDVKP N L++ K     +K  L DF  A      +    T   T  YV P
Sbjct: 146 SHNIAHRDVKPENLLYTSKEKDAVLK--LTDFGFAKETTQNALQ--TPCYTPYYVAP 198

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 74.1 bits (182), Expect = 5e-14
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDL 612
           T+ +RAPEV+         +DIWS G  +  ++  +  F G D       + +  G+   
Sbjct: 226 TRYYRAPEVIL-GMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCP 284

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-----DLVDK 667
             + KL     ++       ++ P      + KL        +   + L      DL+ K
Sbjct: 285 EFMKKLQPTVRNY------VENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSK 338

Query: 668 CLTVNPRLRISAEDALKHEFFAPCHE 693
            L ++P  RIS +DAL+H +    ++
Sbjct: 339 MLVIDPAKRISVDDALQHPYINVWYD 364

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 18/146 (12%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-----NELRMLERFGGKNFIIKYEG 264
           GSG  G V  A        VAIK   +   ++         EL +++    KN II    
Sbjct: 71  GSGAQGIVCAAYDAVLDRNVAIKK-LSRPFQNQTHAKRAYRELVLMKCVNHKN-IISLLN 128

Query: 265 CFKCGDSDC------FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHR 318
            F    +         V+E +  +  +V++ E+D  ++ +  Y +   +  LH  GI+HR
Sbjct: 129 VFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHR 188

Query: 319 DVKPGNFLFS--CKAVKGYLIDFNLA 342
           D+KP N +    C  +K  ++DF LA
Sbjct: 189 DLKPSNIVVKSDCT-LK--ILDFGLA 211

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 72.4 bits (178), Expect = 8e-14
 Identities = 53/170 (31%), Positives = 74/170 (43%), Gaps = 18/170 (10%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-----CPHANASKHYVSNELRMLERFGG 255
           + F    E G G +G VY AR   +  VVAIK        +N     +  E+R L++   
Sbjct: 54  KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH 113

Query: 256 KNFIIKYEGCFKCGDSDCFVLEHVK---HDRPEVLKKEIDLSQLQWYGYCLFRALASLHK 312
            N  I+Y GC+    +   V+E+      D  EV KK +   ++    +   + LA LH 
Sbjct: 114 PN-TIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS 172

Query: 313 QGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQA-TLPGTKY 360
             ++HRDVK GN L S    VK  L DF     G       A +  GT Y
Sbjct: 173 HNMIHRDVKAGNILLSEPGLVK--LGDF-----GSASIMAPANSFVGTPY 215

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 44/133 (33%)

Query: 559 APEVLFRSQHQG--PKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVA 616
           APEV+          K+D+WS G+T + L   + P F        ++  +     L+ +A
Sbjct: 218 APEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF--------NMNAMSA---LYHIA 266

Query: 617 KLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-DLVDKCLTVNPRL 675
           +                  P +    W               S  F + VD CL   P+ 
Sbjct: 267 Q---------------NESPALQSGHW---------------SEYFRNFVDSCLQKIPQD 296

Query: 676 RISAEDALKHEFF 688
           R ++E  LKH F 
Sbjct: 297 RPTSEVLLKHRFV 309

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 71.9 bits (177), Expect = 8e-14
 Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 27/163 (16%)

Query: 198 PNFESF--IVEEEEGSGGYGTVYRARRKNDGTVVAIKC--PHANASKHYVSNELRMLERF 253
             FE    + E+  G G +  V            A+K         +  V  E+ ML + 
Sbjct: 8   GRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQC 67

Query: 254 GGKNFIIKYEGCFKCGDSDCF--VLEHVKH----DRPEVLKK----EIDLSQLQWYGYCL 303
            G   +++    F+  + D F  V E ++         + K+    E++ S +      +
Sbjct: 68  QGHRNVLELIEFFE--EEDRFYLVFEKMRGGSILSH--IHKRRHFNELEASVVV---QDV 120

Query: 304 FRALASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLA 342
             AL  LH +GI HRD+KP N L         VK  + DF+L 
Sbjct: 121 ASALDFLHNKGIAHRDLKPENILCEHPNQVSPVK--ICDFDLG 161

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 39/187 (20%), Positives = 63/187 (33%), Gaps = 42/187 (22%)

Query: 521 ILLLTKLHPVPVLII-FYL---------LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQ- 569
           IL        PV I  F L                +   PC G+  + APEV+     + 
Sbjct: 142 ILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPC-GSAEYMAPEVVEAFSEEA 200

Query: 570 ---GPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSEDLWEV-AKLHNRESS 624
                + D+WS GV +LY+++ G  PF G    +               +   +   +  
Sbjct: 201 SIYDKRCDLWSLGV-ILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYE 259

Query: 625 FPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALK 684
           FP+              +W             I  +  DL+ K L  + + R+SA   L+
Sbjct: 260 FPD-------------KDWAH-----------ISCAAKDLISKLLVRDAKQRLSAAQVLQ 295

Query: 685 HEFFAPC 691
           H +   C
Sbjct: 296 HPWVQGC 302

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 72.9 bits (179), Expect = 9e-14
 Identities = 49/170 (28%), Positives = 69/170 (40%), Gaps = 22/170 (12%)

Query: 187 HNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-- 244
           +     N  V  N+    ++   G G YG VY A  KN    VAIK       +  +   
Sbjct: 15  YFQGIKNVHVPDNYI---IKHLIGRGSYGYVYLAYDKNTEKNVAIKK-VNRMFEDLIDCK 70

Query: 245 ---NELRMLERFGGKNFIIKYEGCFKCGDSDCF-----VLEHVKHDRPEVLKKEIDLS-- 294
               E+ +L R      II+        D   F     VLE    D  ++ K  I L+  
Sbjct: 71  RILREITILNRLKSDY-IIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFKTPIFLTEE 129

Query: 295 QLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS--CKAVKGYLIDFNLA 342
            ++   Y L      +H+ GI+HRD+KP N L +  C  VK  + DF LA
Sbjct: 130 HIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCS-VK--VCDFGLA 176

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 66.7 bits (163), Expect = 9e-12
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 41/165 (24%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAG----------VTLLYLMIGRTPFFGDPEQNIKDIAKLR 607
           RAPE++   ++    +DIWS G           + +     R P F  P  +   ++  R
Sbjct: 218 RAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLF--PGSSCFPLSPDR 275

Query: 608 GSEDLWEVAKLHNRESSF-------PEDLYAA---------KSLPPINLPEWCKLITKRP 651
            S+ + E +        F        +DL            K  P            K  
Sbjct: 276 NSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHR----------KPI 325

Query: 652 DFLEVIP---SSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE 693
           +  +  P       +L++  L  NP  RI+ + AL H +     +
Sbjct: 326 NLKQKYPSISDDGINLLESMLKFNPNKRITIDQALDHPYLKDVRK 370

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII 260
           E F V E+ G G YG+VY+A  K  G +VAIK     +    +  E+ ++++    + ++
Sbjct: 29  EVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPH-VV 87

Query: 261 KYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIV 316
           KY G +        V+E+       D   +  K +   ++        + L  LH    +
Sbjct: 88  KYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKI 147

Query: 317 HRDVKPGNFLFSCKA-VKGYLIDF 339
           HRD+K GN L + +   K  L DF
Sbjct: 148 HRDIKAGNILLNTEGHAK--LADF 169

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 44/132 (33%)

Query: 559 APEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKL 618
           APEV+    +     DIWS G+T + +  G+ P+         DI  +R           
Sbjct: 193 APEVIQEIGY-NCVADIWSLGITAIEMAEGKPPYA--------DIHPMRA---------- 233

Query: 619 HNRESSFPEDLYA-AKSLPPINLPEWCKLITKRPDFLEVIPSSLF-DLVDKCLTVNPRLR 676
                     ++    + PP           ++P+      S  F D V +CL  +P  R
Sbjct: 234 ----------IFMIPTNPPP-------TF--RKPELW----SDNFTDFVKQCLVKSPEQR 270

Query: 677 ISAEDALKHEFF 688
            +A   L+H F 
Sbjct: 271 ATATQLLQHPFV 282

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 73.6 bits (180), Expect = 1e-13
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 32/185 (17%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVSNELRMLERFGGKNFI 259
           + ++E  G+GG+G V R   ++ G  VAIK      +  ++     E++++++    N +
Sbjct: 16  WEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPN-V 74

Query: 260 IK-YE-----GCFKCGDSDCFVLEH----------VKHDRPEVLKKEIDLSQLQWYGYCL 303
           +   E           D     +E+           + +    LK+    + L      +
Sbjct: 75  VSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLS----DI 130

Query: 304 FRALASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQATLPGT- 358
             AL  LH+  I+HRD+KP N +          K  +ID   A     G        GT 
Sbjct: 131 SSALRYLHENRIIHRDLKPENIVLQPGPQRLIHK--IIDLGYAKELDQGEL-CTEFVGTL 187

Query: 359 KYVPP 363
           +Y+ P
Sbjct: 188 QYLAP 192

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 27/148 (18%), Positives = 40/148 (27%), Gaps = 19/148 (12%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APE+L   +     +D WS G      + G  PF  + +           S + 
Sbjct: 185 GTLQYLAPELL-EQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEH 243

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
             V         F              LP    L       LE         +   L  +
Sbjct: 244 IVVYDDLTGAVKFSSV-----------LPTPNHLSGILAGKLE-------RWLQCMLMWH 285

Query: 673 PRLRISAEDALKHEFFAPCHEMLRKQKL 700
            R R +         F     +L  + L
Sbjct: 286 QRQRGTDPQNPNVGCFQALDSILSLKLL 313

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 29/182 (15%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PHANASKH--YVSNELRMLERFGG 255
           E F   +  G G + TV  AR        AIK     H        YV+ E  ++ R   
Sbjct: 30  EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL-- 87

Query: 256 KN-FIIKYEGCFKCGDSDCFVLEHVK------HDRPEVLKKE--IDLSQLQWYGYCLFRA 306
            + F +K    F+  +   F L + K      +     ++K    D +  ++Y   +  A
Sbjct: 88  DHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKY-----IRKIGSFDETCTRFYTAEIVSA 142

Query: 307 LASLHKQGIVHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQ--ATLPGT-KYV 361
           L  LH +GI+HRD+KP N L +      +  + DF  A V    S      +  GT +YV
Sbjct: 143 LEYLHGKGIIHRDLKPENILLNE---DMHIQITDFGTAKVLSPESKQARANSFVGTAQYV 199

Query: 362 PP 363
            P
Sbjct: 200 SP 201

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 28/146 (19%), Positives = 43/146 (29%), Gaps = 53/146 (36%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNI-KDIAKLRGSE 610
           GT  + +PE+L          D+W+ G  ++Y ++ G  PF    E  I + I KL    
Sbjct: 194 GTAQYVSPELLTEKSA-CKSSDLWALGC-IIYQLVAGLPPFRAGNEYLIFQKIIKL---- 247

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                                       + PE                    DLV+K L 
Sbjct: 248 --------------------------EYDFPEK-------------FFPKARDLVEKLLV 268

Query: 671 VNPRLRI------SAEDALKHEFFAP 690
           ++   R+             H FF  
Sbjct: 269 LDATKRLGCEEMEGYGPLKAHPFFES 294

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 35/155 (22%), Positives = 54/155 (34%), Gaps = 23/155 (14%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS---NELRMLERFGGKN 257
           +      E G G YG V + R    G ++A+K   A  +         +L +  R     
Sbjct: 7   DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCP 66

Query: 258 FIIKYEGCFK-----------CGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRA 306
           F + + G                 S     + V         + I    L      + +A
Sbjct: 67  FTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDK-----GQTIPEDILGKIAVSIVKA 121

Query: 307 LASLHKQG-IVHRDVKPGNFLFSCK-AVKGYLIDF 339
           L  LH +  ++HRDVKP N L +    VK  + DF
Sbjct: 122 LEHLHSKLSVIHRDVKPSNVLINALGQVK--MCDF 154

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 42/140 (30%)

Query: 552 AGTKGFRAPEVLFRSQHQGP---KLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRG 608
           AG K + APE +    +Q     K DIWS G+T++ L I R P+                
Sbjct: 170 AGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSW------------- 216

Query: 609 SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC 668
                          +  + L      P   LP             +   +   D   +C
Sbjct: 217 --------------GTPFQQLKQVVEEPSPQLPA------------DKFSAEFVDFTSQC 250

Query: 669 LTVNPRLRISAEDALKHEFF 688
           L  N + R +  + ++H FF
Sbjct: 251 LKKNSKERPTYPELMQHPFF 270

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 23/137 (16%)

Query: 553 GTKGFRAPEVL-FRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
           GT  F  PE     S + G K+DIWS G+ L  +     PF    + ++ ++        
Sbjct: 212 GTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPF--SLKISLVELFN------ 263

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                 +  +   +P D                            + +   D +   L  
Sbjct: 264 -----NIRTKNIEYPLDRNHFLYPLTNKKSTCSN---------NFLSNEDIDFLKLFLRK 309

Query: 672 NPRLRISAEDALKHEFF 688
           NP  RI++EDALKHE+ 
Sbjct: 310 NPAERITSEDALKHEWL 326

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 42/194 (21%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC------------PHANASK-------HYVSNELRML 250
             G +  +    +       A+K               +N  K           NEL+++
Sbjct: 40  NQGKFNKIILCEKD--NKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQII 97

Query: 251 ERFGGKNFIIKYEGCFKCGDSDCFVLEHV-----------KHDRPEVLKKEIDLSQLQWY 299
                +   +  EG     D    + E++                +     I +  ++  
Sbjct: 98  TDIKNEY-CLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCI 156

Query: 300 GYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPG 357
              +  + + +H +  I HRDVKP N L      VK  L DF  +    D         G
Sbjct: 157 IKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVK--LSDFGESEYMVDKKIK--GSRG 212

Query: 358 T-KYVPP--VNGRK 368
           T +++PP   +   
Sbjct: 213 TYEFMPPEFFSNES 226

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 69.7 bits (171), Expect = 4e-13
 Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 30/167 (17%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK---CPHANASKHYVS------NELRM 249
                  E++ G GG+G V++ R   D +VVAIK      +      +        E+ +
Sbjct: 17  ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76

Query: 250 LERFGGKNFIIKYEGCFKCGDSDCFVLEHVK--------HDRPEVLKKEIDLSQLQWYGY 301
           +      N I+K  G     +    V+E V          D+       I  S       
Sbjct: 77  MSNLNHPN-IVKLYGL--MHNPPRMVMEFVPCGDLYHRLLDK----AHPIKWSVKLRLML 129

Query: 302 CLFRALASLHKQG--IVHRDVKPGNFLFSCKAVKGY----LIDFNLA 342
            +   +  +  Q   IVHRD++  N               + DF L+
Sbjct: 130 DIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS 176

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 70.7 bits (173), Expect = 4e-13
 Identities = 32/148 (21%), Positives = 49/148 (33%), Gaps = 27/148 (18%)

Query: 209 EGSGGYGTVYRARRKNDGTVVAIKC----PHANASKHYVSNELRMLERFGGKNFIIKYEG 264
           +G     TV  AR K  G  V ++       +N    ++  EL + + F   N I+ Y  
Sbjct: 35  KGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPN-IVPYRA 93

Query: 265 CFKCGDSDCFVLEH---------VKHDRPEVLKKEIDLSQLQWYGYCLF---RALASLHK 312
            F   +    V            +     + + +           Y L    +AL  +H 
Sbjct: 94  TFIADNELWVVTSFMAYGSAKDLICTHFMDGMNEL-------AIAYILQGVLKALDYIHH 146

Query: 313 QGIVHRDVKPGNFLFSCK-AVKGYLIDF 339
            G VHR VK  + L S    V   L   
Sbjct: 147 MGYVHRSVKASHILISVDGKVY--LSGL 172

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 66.5 bits (162), Expect = 1e-11
 Identities = 41/168 (24%), Positives = 60/168 (35%), Gaps = 9/168 (5%)

Query: 559 APEVLFRSQHQ-GPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDLWEVA 616
           +PEVL ++      K DI+S G+T   L  G  PF      Q + +         L + +
Sbjct: 203 SPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLN-GTVPCLLDTS 261

Query: 617 KLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP---SSLF-DLVDKCLTVN 672
            +   E +       A S    +L       +             S  F   V++CL  N
Sbjct: 262 TIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRN 321

Query: 673 PRLRISAEDALKHEFFAPCHEMLRK--QKLLRQGSSIDNTTGNPSHKQ 718
           P  R SA   L H FF        +   +LLR  + I N  G+ S   
Sbjct: 322 PDARPSASTLLNHSFFKQIKRRASEALPELLRPVTPITNFEGSQSQDH 369

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 70.3 bits (172), Expect = 5e-13
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 23/155 (14%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGG 255
             + F    E G+G  G V++   K  G V+A K  H     A ++ +  EL++L     
Sbjct: 31  KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNS 90

Query: 256 KNFIIKYEGCFKCGDSDCFVLEH---------VKHDRPEVLKKEIDLSQLQWYGYCLFRA 306
              I+ + G F         +EH         +K          I    L      + + 
Sbjct: 91  PY-IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR------IPEQILGKVSIAVIKG 143

Query: 307 LASLHKQG-IVHRDVKPGNFLFSCK-AVKGYLIDF 339
           L  L ++  I+HRDVKP N L + +  +K  L DF
Sbjct: 144 LTYLREKHKIMHRDVKPSNILVNSRGEIK--LCDF 176

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 3/139 (2%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
            GT+ + +PE L +  H   + DIWS G++L+ + +GR P      + ++ +   +   D
Sbjct: 191 VGTRSYMSPERL-QGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGD 249

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP-SSLF-DLVDKCL 669
             E                     P         ++ + P  L     S  F D V+KCL
Sbjct: 250 AAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCL 309

Query: 670 TVNPRLRISAEDALKHEFF 688
             NP  R   +  + H F 
Sbjct: 310 IKNPAERADLKQLMVHAFI 328

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 24/158 (15%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNF 258
           +++   VEE  G G +G V +A+ +     VAIK   + + +     ELR L R    N 
Sbjct: 6   DYKEIEVEEVVGRGAFGVVCKAKWR--AKDVAIKQIESESERKAFIVELRQLSRVNHPN- 62

Query: 259 IIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLF-----RALAS 309
           I+K  G   C +  C V+E+ +    ++   VL     L          +     + +A 
Sbjct: 63  IVKLYGA--CLNPVCLVMEYAEGGSLYN---VLHGAEPLPYYTAAHAMSWCLQCSQGVAY 117

Query: 310 LHK---QGIVHRDVKPGNFLF--SCKAVKGYLIDFNLA 342
           LH    + ++HRD+KP N L       +K  + DF  A
Sbjct: 118 LHSMQPKALIHRDLKPPNLLLVAGGTVLK--ICDFGTA 153

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 34/117 (29%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF--FGDPEQNIKDIAKLRG 608
             G+  + APEV F   +   K D++S G+ L  ++  R PF   G P   I        
Sbjct: 163 NKGSAAWMAPEV-FEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRI-------- 213

Query: 609 SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLIT--------KRPDFLEVI 657
              +W V     R    P        L          L+T        +RP   E++
Sbjct: 214 ---MWAVHN-GTR----PP-------LIKNLPKPIESLMTRCWSKDPSQRPSMEEIV 255

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 70.1 bits (172), Expect = 7e-13
 Identities = 48/234 (20%), Positives = 77/234 (32%), Gaps = 40/234 (17%)

Query: 148 PKGPKLQASRHNKAFDAKEKKQGKRDQISRIMALKATGNHNDDQTNAKVLPNFESFIVEE 207
           P+ P                +Q  +  +   + +K     +D +  ++VL          
Sbjct: 21  PQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAIIDDYKVTSQVL---------- 70

Query: 208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHY-VSNELRMLERFGGKNFIIK----Y 262
             G G  G V +   K      A+K              E+ +  R      I++    Y
Sbjct: 71  --GLGINGKVLQIFNKRTQEKFALKM----LQDCPKARREVELHWRASQCPHIVRIVDVY 124

Query: 263 EGCFKCGDSDCFVLEHVK--------HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQG 314
           E  +        V+E +          DR +    E + S++      +  A+  LH   
Sbjct: 125 ENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIM---KSIGEAIQYLHSIN 181

Query: 315 IVHRDVKPGNFLFSCKA----VKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           I HRDVKP N L++ K     +K  L DF  A        +  T   T  YV P
Sbjct: 182 IAHRDVKPENLLYTSKRPNAILK--LTDFGFA-KETTSHNSLTTPCYTPYYVAP 232

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 54/175 (30%)

Query: 521 ILLLTKLHPVPVLII-FYLLLGNGKQKKDG-----PCAGTKGFRAPEVLFRSQHQGPKLD 574
           +L  +K     + +  F    G  K+         PC  T  + APEVL   ++     D
Sbjct: 192 LLYTSKRPNAILKLTDF----GFAKETTSHNSLTTPC-YTPYYVAPEVLGPEKY-DKSCD 245

Query: 575 IWSAGVTLLYLMI-GRTPFFGDPEQNI-KDIAK--LRGSEDLWEVAKLHNRESSFPEDLY 630
           +WS GV ++Y+++ G  PF+ +    I   +      G  +             FP    
Sbjct: 246 MWSLGV-IMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYE-------------FPN--- 288

Query: 631 AAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKH 685
                     PEW +           +   +  L+   L   P  R++  + + H
Sbjct: 289 ----------PEWSE-----------VSEEVKMLIRNLLKTEPTQRMTITEFMNH 322

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 46/170 (27%), Positives = 67/170 (39%), Gaps = 18/170 (10%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC--PHANASKHYVSNELRMLERFGGKNF 258
           + +   E+ G G  GTVY A     G  VAI+         K  + NE+ ++      N 
Sbjct: 20  KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN- 78

Query: 259 IIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQGIV 316
           I+ Y   +  GD    V+E++       +  E  + + Q    C    +AL  LH   ++
Sbjct: 79  IVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVI 138

Query: 317 HRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQA-----TLPGTKY 360
           HRD+K  N L      VK  L DF     GF            T+ GT Y
Sbjct: 139 HRDIKSDNILLGMDGSVK--LTDF-----GFCAQITPEQSKRSTMVGTPY 181

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 42/137 (30%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APEV+ R  + GPK+DIWS G+  + ++ G  P+         +   LR     
Sbjct: 178 GTPYWMAPEVVTRKAY-GPKVDIWSLGIMAIEMIEGEPPYL--------NENPLRA---- 224

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-DLVDKCLTV 671
                           LY   +     L    KL            S++F D +++CL +
Sbjct: 225 ----------------LYLIATNGTPELQNPEKL------------SAIFRDFLNRCLEM 256

Query: 672 NPRLRISAEDALKHEFF 688
           +   R SA++ L+H+F 
Sbjct: 257 DVEKRGSAKELLQHQFL 273

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 13/140 (9%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-------IKDIAKLRGSE 610
           R+PEVL  +   G   DIWS    +  L+ G   F  D   +       I  I +L G  
Sbjct: 202 RSPEVLLGAPW-GCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGEL 260

Query: 611 DLWEVAKLHNRESSFPEDL--YAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC 668
             + +       + F           L    L +   ++T++  F +     + D +   
Sbjct: 261 PSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLED---VLTEKYKFSKDEAKEISDFLSPM 317

Query: 669 LTVNPRLRISAEDALKHEFF 688
           L ++PR R  A   + H + 
Sbjct: 318 LQLDPRKRADAGGLVNHPWL 337

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 37/165 (22%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK-----CPHANASKHYVSNELRMLER----------FG 254
           G G + TV+ A+   + T VA+K       +  A++     E+++L+R            
Sbjct: 28  GWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAED----EIKLLQRVNDADNTKEDSM 83

Query: 255 GKNFIIKYEGCFK-CGDSD---CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRA 306
           G N I+K    F   G +      V E +  +   ++KK     I L  ++     L   
Sbjct: 84  GANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLG 143

Query: 307 LASLHKQ-GIVHRDVKPGNFLFS-------CKAVKGYLIDFNLAM 343
           L  +H++ GI+H D+KP N L            +K  + D   A 
Sbjct: 144 LDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIK--IADLGNAC 186

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 18/170 (10%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC--PHANASKHYVSNELRMLERFGGKNF 258
                  + G G  G V  AR K+ G  VA+K         +  + NE+ ++  +   N 
Sbjct: 45  LLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN- 103

Query: 259 IIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC--LFRALASLHKQGIV 316
           +++    +  G+    ++E ++      +  ++ L++ Q    C  + +ALA LH QG++
Sbjct: 104 VVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVI 163

Query: 317 HRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQ-----ATLPGTKY 360
           HRD+K  + L +    VK  L DF     GF    ++      +L GT Y
Sbjct: 164 HRDIKSDSILLTLDGRVK--LSDF-----GFCAQISKDVPKRKSLVGTPY 206

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 42/137 (30%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APEV+ RS +   ++DIWS G+ ++ ++ G  P+F          + ++     
Sbjct: 203 GTPYWMAPEVISRSLY-ATEVDIWSLGIMVIEMVDGEPPYF--------SDSPVQA---- 249

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-DLVDKCLTV 671
                           +   +  PP  L    K+            S +  D +++ L  
Sbjct: 250 ----------------MKRLRDSPPPKLKNSHKV------------SPVLRDFLERMLVR 281

Query: 672 NPRLRISAEDALKHEFF 688
           +P+ R +A++ L H F 
Sbjct: 282 DPQERATAQELLDHPFL 298

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 67.8 bits (166), Expect = 4e-12
 Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 15/154 (9%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-NELRMLERF-----GGK 256
           + V +  G G +G V +A        VA+K        H  +  E+R+LE          
Sbjct: 99  YEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNT 158

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHK 312
             +I     F   +  C   E +  +  E++KK       L  ++ + + + + L +LHK
Sbjct: 159 MNVIHMLENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHK 218

Query: 313 QGIVHRDVKPGNFLF---SCKAVKGYLIDFNLAM 343
             I+H D+KP N L        +K  +IDF  + 
Sbjct: 219 NRIIHCDLKPENILLKQQGRSGIK--VIDFGSSC 250

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 18/148 (12%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDLWEVA 616
           RAPEV+  +++ G  +D+WS G  L  L+ G     G+ E + +  + +L G      + 
Sbjct: 266 RAPEVILGARY-GMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLD 324

Query: 617 KLHNRESSFPEDL---YAAKSLPPINLPEWCKLITKRPDFLEVIPS-------------S 660
                ++         Y   +             ++R        S              
Sbjct: 325 ASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPL 384

Query: 661 LFDLVDKCLTVNPRLRISAEDALKHEFF 688
             D + +CL  +P +R++   AL+H + 
Sbjct: 385 FLDFLKQCLEWDPAVRMTPGQALRHPWL 412

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 28/216 (12%)

Query: 164 AKEKKQGKRDQISRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRK 223
           A  KK  +++ +   +A          +T ++     + F   +  G+G +G V   + K
Sbjct: 4   AAAKKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHK 63

Query: 224 NDGTVVAIKC---PHANASKH--YVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH 278
             G   A+K          K   +  NE R+L+      F++K E  FK   +   V+E+
Sbjct: 64  ESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN-FPFLVKLEFSFKDNSNLYMVMEY 122

Query: 279 VK------HDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK 330
           V       H     L++         ++Y   +      LH   +++RD+KP N L    
Sbjct: 123 VAGGEMFSH-----LRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLID-- 175

Query: 331 AVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
             +GY  + DF  A      ++   TL GT + + P
Sbjct: 176 -QQGYIQVTDFGFAKRVKGRTW---TLCGTPEALAP 207

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 20/178 (11%)

Query: 183 ATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK--CPHANASK 240
           A+G    D     V        V      GG+  VY A+    G   A+K    +     
Sbjct: 10  ASGRDQSDFVGQTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKN 69

Query: 241 HYVSNELRMLERFGGKNFIIKYEGCFKCGDSD-------CFVLEHVK------HDRPEVL 287
             +  E+  +++  G   I+++      G  +         +L  +         +    
Sbjct: 70  RAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMES 129

Query: 288 KKEIDLSQLQWYGYCLFRALASLHKQG--IVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
           +  +    +    Y   RA+  +H+Q   I+HRD+K  N L S +  +K  L DF  A
Sbjct: 130 RGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIK--LCDFGSA 185

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 24/135 (17%), Positives = 39/135 (28%), Gaps = 46/135 (34%)

Query: 553 GTKGFRAPEVLFRSQHQ--GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
            T  +R PE++    +   G K DIW+ G  L  L   + PF    +  I     + G  
Sbjct: 212 TTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRI-----VNGK- 265

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                                       ++P                 +    L+   L 
Sbjct: 266 ---------------------------YSIPPHDT-----------QYTVFHSLIRAMLQ 287

Query: 671 VNPRLRISAEDALKH 685
           VNP  R+S  + +  
Sbjct: 288 VNPEERLSIAEVVHQ 302

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 65.7 bits (161), Expect = 7e-12
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 17/166 (10%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC-PHANASKHY----VSNELRMLERFGGKNFIIKYEG 264
           G GG+   +     +   V A K  P +   K +    +S E+ +      ++ ++ + G
Sbjct: 24  GKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQH-VVGFHG 82

Query: 265 CFKCGDSDCFVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDV 320
            F+  D    VLE  +     +     +K +   + ++Y   +      LH+  ++HRD+
Sbjct: 83  FFEDNDFVFVVLELCRRRSLLEL-HKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDL 141

Query: 321 KPGNFLFSCKA-VKGYLIDFNLA-MVGFDGSFNQATLPGT-KYVPP 363
           K GN   +    VK  + DF LA  V +DG   +  L GT  Y+ P
Sbjct: 142 KLGNLFLNEDLEVK--IGDFGLATKVEYDGERKK-VLCGTPNYIAP 184

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 44/150 (29%)

Query: 539 LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ 598
            +    ++K   C GT  + APEVL +  H   ++D+WS G  +  L++G+ PF      
Sbjct: 164 KVEYDGERKKVLC-GTPNYIAPEVLSKKGH-SFEVDVWSIGCIMYTLLVGKPPF---ETS 218

Query: 599 NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP 658
            +K+              ++   E S P+                             I 
Sbjct: 219 CLKETYL-----------RIKKNEYSIPKH----------------------------IN 239

Query: 659 SSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
                L+ K L  +P  R +  + L  EFF
Sbjct: 240 PVAASLIQKMLQTDPTARPTINELLNDEFF 269

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 30/183 (16%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK------CPHANASKHYVSNELRMLER 252
           NF+ F +    G G +G V   ++ +   + A+K      C   N  ++ V  EL++++ 
Sbjct: 13  NFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRN-VFKELQIMQG 71

Query: 253 FGGKN-FIIKYEGCFKCGDSDCFVLEHVK------HDRPEVLKKEI--DLSQLQWYGYCL 303
              ++ F++     F+  +    V++ +       H     L++ +      ++ +   L
Sbjct: 72  L--EHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYH-----LQQNVHFKEETVKLFICEL 124

Query: 304 FRALASLHKQGIVHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGTK-Y 360
             AL  L  Q I+HRD+KP N L       G+  + DFN+A +    +    T+ GTK Y
Sbjct: 125 VMALDYLQNQRIIHRDMKPDNILLDE---HGHVHITDFNIAAMLPRETQIT-TMAGTKPY 180

Query: 361 VPP 363
           + P
Sbjct: 181 MAP 183

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 28/142 (19%), Positives = 40/142 (28%), Gaps = 42/142 (29%)

Query: 552 AGTKGFRAPEVLFRSQHQG--PKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGS 609
           AGTK + APE+    +  G    +D WS GVT   L+ GR P+      + K+I      
Sbjct: 175 AGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVH---- 230

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
                                                 T    +       +  L+ K L
Sbjct: 231 -----------------------------------TFETTVVTYPSAWSQEMVSLLKKLL 255

Query: 670 TVNPRLRI-SAEDALKHEFFAP 690
             NP  R     D     +   
Sbjct: 256 EPNPDQRFSQLSDVQNFPYMND 277

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 17/166 (10%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC-PHANASKHY----VSNELRMLERFGGKNFIIKYEG 264
           G GG+   +     +   V A K  P +   K +    +S E+ +      ++ ++ + G
Sbjct: 50  GKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQH-VVGFHG 108

Query: 265 CFKCGDSDCFVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDV 320
            F+  D    VLE  +     +     +K +   + ++Y   +      LH+  ++HRD+
Sbjct: 109 FFEDNDFVFVVLELCRRRSLLEL-HKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDL 167

Query: 321 KPGNFLFSCKA-VKGYLIDFNLA-MVGFDGSFNQATLPGT-KYVPP 363
           K GN   +    VK  + DF LA  V +DG   +  L GT  Y+ P
Sbjct: 168 KLGNLFLNEDLEVK--IGDFGLATKVEYDGERKK-VLCGTPNYIAP 210

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 44/150 (29%)

Query: 539 LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ 598
            +    ++K   C GT  + APEVL +  H   ++D+WS G  +  L++G+ PF      
Sbjct: 190 KVEYDGERKKVLC-GTPNYIAPEVLSKKGH-SFEVDVWSIGCIMYTLLVGKPPF---ETS 244

Query: 599 NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP 658
            +K+              ++   E S P+                             I 
Sbjct: 245 CLKETYL-----------RIKKNEYSIPKH----------------------------IN 265

Query: 659 SSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
                L+ K L  +P  R +  + L  EFF
Sbjct: 266 PVAASLIQKMLQTDPTARPTINELLNDEFF 295

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 545 QKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF-------FGDPE 597
            K       T+ +R+ EVL  S       DIWS       L  G   F       +   E
Sbjct: 247 HKHFTEDIQTRQYRSLEVLIGS-GYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDE 305

Query: 598 QNIKDIAKLRGS--EDLWEVAKLHNRESSFPED--LYAAKSLPPINLPEWCKLITKRPDF 653
            +I  I +L G     L    K    +  F +   L     L P  L E   ++ ++ ++
Sbjct: 306 DHIALIIELLGKVPRKLIVAGK--YSKEFFTKKGDLKHITKLKPWGLFE---VLVEKYEW 360

Query: 654 LEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
            +   +   D +   L + P  R +A + L+H + 
Sbjct: 361 SQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWL 395

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 21/138 (15%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHY---VSNELRMLERFG-------GKNFI 259
           G G + TV+ +        VA+K     +++HY     +E+R+L+           +  +
Sbjct: 46  GWGHFSTVWLSWDIQGKKFVAMKV--VKSAEHYTETALDEIRLLKSVRNSDPNDPNREMV 103

Query: 260 IKYEGCFK----CGDSDCFVLEHVKHDRPEVLK----KEIDLSQLQWYGYCLFRALASLH 311
           ++    FK     G   C V E + H   + +     + + L  ++     + + L  LH
Sbjct: 104 VQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLH 163

Query: 312 KQ-GIVHRDVKPGNFLFS 328
            +  I+H D+KP N L S
Sbjct: 164 TKCRIIHTDIKPENILLS 181

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 24/154 (15%)

Query: 207 EEEGSGGYGTVYRARRKNDGTVVAIK----CPHANASKHYVSNELRMLERFGGKNFIIKY 262
            E G G + TVY+         VA           + +     E  ML+     N I+++
Sbjct: 32  IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPN-IVRF 90

Query: 263 EGCFKCGDSD----CFVLEHVK----HDRPEVLKKEIDLSQLQWYGYC--LFRALASLHK 312
              ++           V E +           LK+   +       +C  + + L  LH 
Sbjct: 91  YDSWESTVKGKKCIVLVTELMTSGTLKT---YLKRFKVMKIKVLRSWCRQILKGLQFLHT 147

Query: 313 QG--IVHRDVKPGNFLFSCK--AVKGYLIDFNLA 342
           +   I+HRD+K  N   +    +VK  + D  LA
Sbjct: 148 RTPPIIHRDLKCDNIFITGPTGSVK--IGDLGLA 179

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 56.6 bits (137), Expect = 8e-09
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 41/139 (29%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
             GT  F APE+    +     +D+++ G+ +L +     P+     QN   I +   S 
Sbjct: 190 VIGTPEFMAPEMY--EEKYDESVDVYAFGMCMLEMATSEYPYSE--CQNAAQIYRRVTSG 245

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                                     P +               +V    + ++++ C+ 
Sbjct: 246 V------------------------KPASFD-------------KVAIPEVKEIIEGCIR 268

Query: 671 VNPRLRISAEDALKHEFFA 689
            N   R S +D L H FF 
Sbjct: 269 QNKDERYSIKDLLNHAFFQ 287

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 37/225 (16%), Positives = 63/225 (28%), Gaps = 68/225 (30%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK---CPHANASKHYVSNELRMLERFGGKN 257
             F   +  G GG+G V+ A+ K D    AIK    P+   ++  V  E++ L +     
Sbjct: 6   TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 65

Query: 258 -------FIIKYEGCFKCGDSDCFVLEHV-------KHDRPEVLKKEIDLSQLQWYG--- 300
                  ++      ++    + ++ +                  K   +          
Sbjct: 66  IVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVG 125

Query: 301 ----------------YC-------------------------LFR----ALASLHKQGI 315
                            C                         +F     A+  LH +G+
Sbjct: 126 QLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGL 185

Query: 316 VHRDVKPGN-FLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK 359
           +HRD+KP N F      VK  + DF L          Q  L    
Sbjct: 186 MHRDLKPSNIFFTMDDVVK--VGDFGLVTAMDQDEEEQTVLTPMP 228

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 48/138 (34%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN--IKDIAKLRGSE 610
           GTK + +PE +  + +   K+DI+S G+ +L+ ++    F    E+   I D+       
Sbjct: 238 GTKLYMSPEQIHGNNY-SHKVDIFSLGL-ILFELL--YSFSTQMERVRIITDV------- 286

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                     R   FP              P+   ++                     L+
Sbjct: 287 ----------RNLKFPLL-------FTQKYPQEHMMVQ------------------DMLS 311

Query: 671 VNPRLRISAEDALKHEFF 688
            +P  R  A D +++  F
Sbjct: 312 PSPTERPEATDIIENAIF 329

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 3/150 (2%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDLWEVA 616
           R PEV+          D+WS G  L     G T F     +  +  + K+ G      + 
Sbjct: 206 RPPEVILELGW-AQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIH 264

Query: 617 KLHNRESSFPEDL-YAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL 675
           +   ++  +   L +   S     + E CK +        +    LFDL+ + L  +P  
Sbjct: 265 RTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQ 324

Query: 676 RISAEDALKHEFFAPCHEMLRKQKLLRQGS 705
           RI+  +AL H FFA      R     R  S
Sbjct: 325 RITLAEALLHPFFAGLTPEERSFHTSRNPS 354

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 19/140 (13%)

Query: 203 FIVEEEEGSGGYGTVYRAR-RKNDGTVVAIKC-----PHANASKHYVSNELRMLERFG-- 254
           + +    G G +G V          + VA+K       +  A++     E+ +L++    
Sbjct: 21  YEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAAR----LEINVLKKIKEK 76

Query: 255 ---GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRAL 307
               K   +     F      C   E +  +  E LK+       L  ++   Y L  AL
Sbjct: 77  DKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHAL 136

Query: 308 ASLHKQGIVHRDVKPGNFLF 327
             LH+  + H D+KP N LF
Sbjct: 137 RFLHENQLTHTDLKPENILF 156

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 42/191 (21%), Positives = 64/191 (33%), Gaps = 46/191 (24%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC--------PHANASKHYVSNELRMLERFG 254
           + +    G GG+GTV+   R  D   VAIK             +       E+ +L + G
Sbjct: 33  YRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVG 92

Query: 255 GKNF---IIKYEGCFKCGDSDCFVLEH-----------VKHDR-PEVLKKEIDLSQLQWY 299
                  +I+    F+  +    VLE             +     E   +          
Sbjct: 93  AGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCF-------- 144

Query: 300 GYCLFRALAS----LHKQGIVHRDVKPGNFLFSCKA--VKGYLIDFNLAMVGFDGSFNQA 353
               F  + +     H +G+VHRD+K  N L   +    K  LIDF    +  D  +   
Sbjct: 145 ----FGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAK--LIDFGSGALLHDEPYT-- 196

Query: 354 TLPGT-KYVPP 363
              GT  Y PP
Sbjct: 197 DFDGTRVYSPP 207

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 32/146 (21%), Positives = 48/146 (32%), Gaps = 53/146 (36%)

Query: 547 KDGP---CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKD 602
            D P     GT+ +  PE + R Q+      +WS G+ LLY M+ G  PF  D     ++
Sbjct: 191 HDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGI-LLYDMVCGDIPFERD-----QE 244

Query: 603 IAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF 662
           I +          A+LH                     P               +     
Sbjct: 245 ILE----------AELH--------------------FPAH-------------VSPDCC 261

Query: 663 DLVDKCLTVNPRLRISAEDALKHEFF 688
            L+ +CL   P  R S E+ L   + 
Sbjct: 262 ALIRRCLAPKPSSRPSLEEILLDPWM 287

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 63.4 bits (155), Expect = 4e-11
 Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 19/166 (11%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPH-----ANASKHYVSNELRMLERFGGKNFIIKYEG 264
           G G +G VY AR K    ++A+K            +H +  E+ +       N I++  G
Sbjct: 18  GKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPN-ILRLYG 76

Query: 265 CFKCGDSDCFVLEHVKHDRPEV---LKKEIDLSQLQ--WYGYCLFRALASLHKQGIVHRD 319
            F        +LE+       V   L+K     + +   Y   L  AL+  H + ++HRD
Sbjct: 77  YFHDATRVYLILEYAPLG--TVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRD 134

Query: 320 VKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           +KP N L      +K  + DF  ++        +  L GT  Y+PP
Sbjct: 135 IKPENLLLGSAGELK--IADFGWSVHAPSSR--RTDLCGTLDYLPP 176

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 47/138 (34%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLY-LMIGRTPFFGDPEQNI-KDIAKLRGSE 610
           GT  +  PE++    H   K+D+WS GV L Y  ++G+ PF  +  Q   K I+++    
Sbjct: 169 GTLDYLPPEMIEGRMH-DEKVDLWSLGV-LCYEFLVGKPPFEANTYQETYKRISRVE--- 223

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                                         P++             +     DL+ + L 
Sbjct: 224 ---------------------------FTFPDF-------------VTEGARDLISRLLK 243

Query: 671 VNPRLRISAEDALKHEFF 688
            NP  R    + L+H + 
Sbjct: 244 HNPSQRPMLREVLEHPWI 261

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 65.3 bits (159), Expect = 5e-11
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 27/155 (17%)

Query: 205 VEEEEGSGGYGTVYRARRKN-DGTVVAIKCPHANASKHYVS---NELRMLER-------- 252
           V+     GG G +Y A  +N +G  V +K    +      +    E + L          
Sbjct: 84  VKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQ 143

Query: 253 ---FGGKNFIIKYEGCFKCGDSDCF-VLEHVK-HDRPEVLKKEIDLSQLQWYGYCLFRAL 307
              F         E   + GD   + V+E+V          +++ +++   Y   +  AL
Sbjct: 144 IFNFV--------EHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPAL 195

Query: 308 ASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
           + LH  G+V+ D+KP N + + + +K  LID    
Sbjct: 196 SYLHSIGLVYNDLKPENIMLTEEQLK--LIDLGAV 228

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 25/170 (14%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPH------ANASKHYVSNELRMLERFGGKNFIIKYE 263
           G G +G V   R K+   V A+K          + S      E  ++       ++++  
Sbjct: 78  GRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAF-FWEERDIMAF-ANSPWVVQLF 135

Query: 264 GCFKCGDSDCFVLEHV------KHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
             F+       V+E++                ++     ++Y   +  AL ++H  G +H
Sbjct: 136 YAFQDDRYLYMVMEYMPGGDLVNLMS----NYDVPEKWARFYTAEVVLALDAIHSMGFIH 191

Query: 318 RDVKPGNFLFSCKAVKGY--LIDFNLAM-VGFDGSFNQATLPGT-KYVPP 363
           RDVKP N L       G+  L DF   M +  +G     T  GT  Y+ P
Sbjct: 192 RDVKPDNMLLDK---SGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISP 238

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 23/153 (15%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDLW--- 613
           R+PEVL    +    +D+WS G  L+ +  G   F G  E + +  I ++ G        
Sbjct: 225 RSPEVLLGMPY-DLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILD 283

Query: 614 ---EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS---------- 660
              +  K   +      +L   K       P   + +          P            
Sbjct: 284 QAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTV 343

Query: 661 -----LFDLVDKCLTVNPRLRISAEDALKHEFF 688
                  DL+ + L  +P+ RI    AL+H FF
Sbjct: 344 ADYLKFKDLILRMLDYDPKTRIQPYYALQHSFF 376

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 25/156 (16%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIK-----CPHANASKHYVSNELRMLERF---- 253
           + ++   G G +G V +A  + +   VAIK         N ++     E+R+LE      
Sbjct: 56  YEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQ----IEVRLLELMNKHD 111

Query: 254 -GGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALA 308
              K +I+  +  F   +  C V E + ++  ++L+      + L+  + +   +  AL 
Sbjct: 112 TEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALL 171

Query: 309 SLH--KQGIVHRDVKPGNFLF---SCKAVKGYLIDF 339
            L   +  I+H D+KP N L       A+K  ++DF
Sbjct: 172 FLATPELSIIHCDLKPENILLCNPKRSAIK--IVDF 205

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 24/175 (13%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS--NELRMLERFGGK 256
                I  E  G G +G   +   +  G V+ +K       +   +   E++++      
Sbjct: 8   RPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHP 67

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVK--------HDRPEVLKKEIDLSQLQWYGYCLFRALA 308
           N ++K+ G         F+ E++K                 +   SQ   +   +   +A
Sbjct: 68  N-VLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSM----DSQYPWSQRVSFAKDIASGMA 122

Query: 309 SLHKQGIVHRDVKPGNFL----FSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK 359
            LH   I+HRD+   N L     +       + DF LA +  D       L   K
Sbjct: 123 YLHSMNIIHRDLNSHNCLVRENKNVV-----VADFGLARLMVDEKTQPEGLRSLK 172

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 62.2 bits (152), Expect = 9e-11
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 20/168 (11%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC-PHANASKHYVSNELRM----LERFGGKNFIIKYEG 264
           G G +  VYRA   + G  VAIK        K  +   ++       +    + I++   
Sbjct: 20  GKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPS-ILELYN 78

Query: 265 CFKCGDSDC--FVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHR 318
            F+  DS+    VLE   +       +   K    ++ + + + +   +  LH  GI+HR
Sbjct: 79  YFE--DSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHR 136

Query: 319 DVKPGNFLFSCKA-VKGYLIDFNLA-MVGFDGSFNQATLPGT-KYVPP 363
           D+   N L +    +K  + DF LA  +      +  TL GT  Y+ P
Sbjct: 137 DLTLSNLLLTRNMNIK--IADFGLATQLKMPHEKHY-TLCGTPNYISP 181

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 57.5 bits (140), Expect = 3e-09
 Identities = 32/137 (23%), Positives = 47/137 (34%), Gaps = 45/137 (32%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLY-LMIGRTPFFGDPEQNIKDIAKLRGSED 611
           GT  + +PE+  RS H G + D+WS G  + Y L+IGR PF       +K+         
Sbjct: 174 GTPNYISPEIATRSAH-GLESDVWSLGC-MFYTLLIGRPPF---DTDTVKNTLN------ 222

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                K+   +   P                              +     DL+ + L  
Sbjct: 223 -----KVVLADYEMPSF----------------------------LSIEAKDLIHQLLRR 249

Query: 672 NPRLRISAEDALKHEFF 688
           NP  R+S    L H F 
Sbjct: 250 NPADRLSLSSVLDHPFM 266

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 62.7 bits (153), Expect = 9e-11
 Identities = 47/199 (23%), Positives = 67/199 (33%), Gaps = 52/199 (26%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF--------- 253
           + V    GSGG+G+VY   R +D   VAIK  H    +     EL    R          
Sbjct: 45  YQVGPLLGSGGFGSVYSGIRVSDNLPVAIK--HVEKDRISDWGELPNGTRVPMEVVLLKK 102

Query: 254 ---GGKNFIIKYEGCFKCGDSDCFVLEH-----------VKHDR-PEVLKKEIDLSQLQW 298
              G    +I+    F+  DS   +LE             +     E L +         
Sbjct: 103 VSSGFSG-VIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSF------- 154

Query: 299 YGYCLFRALAS----LHKQGIVHRDVKPGNFLFSCKA--VKGYLIDFNLAMVGFDGSFNQ 352
                F  +       H  G++HRD+K  N L       +K  LIDF    +  D  +  
Sbjct: 155 -----FWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELK--LIDFGSGALLKDTVYT- 206

Query: 353 ATLPGT-KYVPP--VNGRK 368
               GT  Y PP  +   +
Sbjct: 207 -DFDGTRVYSPPEWIRYHR 224

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 51/145 (35%)

Query: 547 KDGP---CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDI 603
           KD       GT+ +  PE +   ++ G    +WS G+ L  ++ G  PF  + ++ I   
Sbjct: 201 KDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPF--EHDEEIIR- 257

Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD 663
            ++                                   +              + S    
Sbjct: 258 GQVF--------------------------------FRQR-------------VSSECQH 272

Query: 664 LVDKCLTVNPRLRISAEDALKHEFF 688
           L+  CL + P  R + E+   H + 
Sbjct: 273 LIRWCLALRPSDRPTFEEIQNHPWM 297

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 5/135 (3%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRG--SEDLWE 614
           RAPEV+          D+WS G  L  L  G   F        +  +  +     +++  
Sbjct: 226 RAPEVILNLGW-DVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLY 284

Query: 615 VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF-DLVDKCLTVNP 673
            A   N      +D          +     K + K     ++I   LF D +   L ++P
Sbjct: 285 EATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDP 344

Query: 674 RLRISAEDALKHEFF 688
            LR S  + LKH+F 
Sbjct: 345 TLRPSPAELLKHKFL 359

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 17/138 (12%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-----PHANASKHYVSNELRMLERFG--- 254
           F+V  + G G +G V   +  ++    A+K       +  ++K     E  +L++     
Sbjct: 37  FLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAK----IEADILKKIQNDD 92

Query: 255 -GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALAS 309
              N I+KY G F   D  C + E +     E++ +       +  ++ Y   + +AL  
Sbjct: 93  INNNNIVKYHGKFMYYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNY 152

Query: 310 LHKQGIVHRDVKPGNFLF 327
           L K  + H D+KP N L 
Sbjct: 153 LRKMSLTHTDLKPENILL 170

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 13/145 (8%)

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDLWEVA 616
           RAPEV+          D+WS G  L+   +G T F     +  +  + ++ G      + 
Sbjct: 201 RAPEVILALGW-SQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQ 259

Query: 617 KLHNRE------SSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
           K   R+        + E   A + +        CK + +     +V    LFDL+ K L 
Sbjct: 260 KTRKRKYFHHDRLDWDEHSSAGRYVSRA-----CKPLKEFMLSQDVEHERLFDLIQKMLE 314

Query: 671 VNPRLRISAEDALKHEFFAPCHEML 695
            +P  RI+  +ALKH FF    + +
Sbjct: 315 YDPAKRITLREALKHPFFDLLKKSI 339

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 60.0 bits (146), Expect = 9e-10
 Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 19/140 (13%)

Query: 203 FIVEEEEGSGGYGTVYRAR-RKNDGTVVAIKC-----PHANASKHYVSNELRMLERFG-- 254
           + + +  G G +G V      K  G  VA+K       +  A++    +E+++LE     
Sbjct: 16  YEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAAR----SEIQVLEHLNTT 71

Query: 255 ---GKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRAL 307
                   ++    F+     C V E +     + +K+       L  ++   Y + +++
Sbjct: 72  DPNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSV 131

Query: 308 ASLHKQGIVHRDVKPGNFLF 327
             LH   + H D+KP N LF
Sbjct: 132 NFLHSNKLTHTDLKPENILF 151

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 24/170 (14%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHANASKH--YVSNELRMLERFGGKNFIIKYEG 264
           G G Y  V   R K    + A+K       N  +   +V  E  + E+     F++    
Sbjct: 18  GRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHS 77

Query: 265 CFKCGDSDCFVLEHVK------HDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIV 316
           CF+      FV+E+V       H     ++++  +     ++Y   +  AL  LH++GI+
Sbjct: 78  CFQTESRLFFVIEYVNGGDLMFH-----MQRQRKLPEEHARFYSAEISLALNYLHERGII 132

Query: 317 HRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           +RD+K  N L      +G+  L D+ +   G       +T  GT  Y+ P
Sbjct: 133 YRDLKLDNVLLDS---EGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAP 179

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 34/139 (24%), Positives = 48/139 (34%), Gaps = 42/139 (30%)

Query: 552 AGTKGFRAPEVL--FRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGS 609
            GT  F APE L   R    G  LD+W+ GVTL   + G+ PF  +       I  L   
Sbjct: 198 VGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE------RIMCLH-- 249

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
                 +K+ ++   FP+                             I   L DL+ + L
Sbjct: 250 ------SKIKSQALEFPDQPD--------------------------IAEDLKDLITRML 277

Query: 670 TVNPRLRISAEDALKHEFF 688
             NP  RI   +   H + 
Sbjct: 278 DKNPESRIVVPEIKLHPWV 296

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 44/193 (22%), Positives = 66/193 (34%), Gaps = 47/193 (24%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCG 269
           G G YG V  A  +ND T  A+K      SK  +  +     R   +       GC +  
Sbjct: 22  GKGSYGVVKLAYNENDNTYYAMKV----LSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPR 77

Query: 270 DSDCFV------LEHVKHDRPEVLK-KEI--DLSQLQWY---GYC--------------- 302
                V      L+ + H  P V+K  E+  D ++   Y                     
Sbjct: 78  GPIEQVYQEIAILKKLDH--PNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLS 135

Query: 303 ------LFRALAS----LHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFN 351
                  F+ L      LH Q I+HRD+KP N L      +K  + DF ++         
Sbjct: 136 EDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIK--IADFGVSNEFKGSDAL 193

Query: 352 QATLPGT-KYVPP 363
            +   GT  ++ P
Sbjct: 194 LSNTVGTPAFMAP 206

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 62.2 bits (151), Expect = 4e-10
 Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 38/177 (21%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS---------NELRMLERFGGKN--F 258
           G GG+G VY  R+ + G + A+KC      K  +          NE  ML      +  F
Sbjct: 198 GRGGFGEVYGCRKADTGKMYAMKC----LDKKRIKMKQGETLALNERIMLSLVSTGDCPF 253

Query: 259 IIKYEGCFKCGDSDCFVLE---------HVKHDRPEVLKKEIDLSQLQWYGYCLFRALAS 309
           I+     F   D   F+L+         H+              + +++Y   +   L  
Sbjct: 254 IVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHG------VFSEADMRFYAAEIILGLEH 307

Query: 310 LHKQGIVHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           +H + +V+RD+KP N L       G+  + D  LA        +     GT  Y+ P
Sbjct: 308 MHNRFVVYRDLKPANILLDE---HGHVRISDLGLACDFSKKKPH--ASVGTHGYMAP 359

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 46/144 (31%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSED 611
           GT G+ APEVL +        D +S G  +L+ ++ G +PF     ++  +I +      
Sbjct: 352 GTHGYMAPEVLQKGVAYDSSADWFSLGC-MLFKLLRGHSPFRQHKTKDKHEIDR------ 404

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                                              +T   +  +     L  L++  L  
Sbjct: 405 ---------------------------------MTLTMAVELPDSFSPELRSLLEGLLQR 431

Query: 672 NPRLRI-----SAEDALKHEFFAP 690
           +   R+      A++  +  FF  
Sbjct: 432 DVNRRLGCLGRGAQEVKESPFFRS 455

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 60.3 bits (147), Expect = 4e-10
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 39/130 (30%)

Query: 559 APEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKL 618
           APE+L R +     +D+WS G+ L  ++ G  P +  P  + +                 
Sbjct: 175 APELLKRREFHAEPVDVWSCGIVLTAMLAGELP-WDQPSDSCQ----------------- 216

Query: 619 HNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRIS 678
                      Y+        L  W K           I S+   L+ K L  NP  RI+
Sbjct: 217 ----------EYSDWKEKKTYLNPWKK-----------IDSAPLALLHKILVENPSARIT 255

Query: 679 AEDALKHEFF 688
             D  K  ++
Sbjct: 256 IPDIKKDRWY 265

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 20/152 (13%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVSNELRMLERFGGKNFIIKYEGCF 266
           G G YG V  A  +     VA+K      A      +  E+ + +    +N ++K+ G  
Sbjct: 16  GEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN-VVKFYGHR 74

Query: 267 KCGDSDCFVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRALAS----LHKQGIVHR 318
           + G+     LE+       DR       +     Q +    F  L +    LH  GI HR
Sbjct: 75  REGNIQYLFLEYCSGGELFDRI-EPDIGMPEPDAQRF----FHQLMAGVVYLHGIGITHR 129

Query: 319 DVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGS 349
           D+KP N L   +  +K  + DF LA V    +
Sbjct: 130 DIKPENLLLDERDNLK--ISDFGLATVFRYNN 159

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 24/176 (13%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-----CPHANASKHYVSNELRMLERF 253
            +    ++E+ G+G +GTV+RA     G+ VA+K       HA     ++  E+ +++R 
Sbjct: 35  PWCDLNIKEKIGAGSFGTVHRAEWH--GSDVAVKILMEQDFHAERVNEFL-REVAIMKRL 91

Query: 254 GGKNFIIKYEGCFKCGDSDCFVLE--------HVKHDRPEVLKKEIDLSQLQWYGYCLFR 305
              N I+ + G      +   V E         + H      ++++D  +     Y + +
Sbjct: 92  RHPN-IVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGA--REQLDERRRLSMAYDVAK 148

Query: 306 ALASLHKQG--IVHRDVKPGNFLF-SCKAVKGYLIDFNLAMVGFDGSFNQATLPGT 358
            +  LH +   IVHR++K  N L      VK  + DF L+ +      +  +  GT
Sbjct: 149 GMNYLHNRNPPIVHRNLKSPNLLVDKKYTVK--VCDFGLSRLKASTFLSSKSAAGT 202

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 33/115 (28%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSE 610
           AGT  + APEVL R +    K D++S GV L  L   + P+   +P Q    +       
Sbjct: 200 AGTPEWMAPEVL-RDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQ----VV------ 248

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLIT--------KRPDFLEVI 657
               V     R     E       +P    P+   +I         KRP F  ++
Sbjct: 249 --AAVGFKCKR----LE-------IPRNLNPQVAAIIEGCWTNEPWKRPSFATIM 290

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 24/157 (15%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-----PHANASKHYVSNELRMLERF 253
            FE   + E  G G +G VY  R   +   VAI+       + +  K +   E+    + 
Sbjct: 31  PFEQLEIGELIGKGRFGQVYHGRWHGE---VAIRLIDIERDNEDQLKAFK-REVMAYRQT 86

Query: 254 GGKNFIIKYEGCFKCGDSDCFVLEHVK--------HDRPEVLKKEIDLSQLQWYGYCLFR 305
             +N ++ + G          +    K         D     K  +D+++ +     + +
Sbjct: 87  RHEN-VVLFMGACMSPPHLAIITSLCKGRTLYSVVRDA----KIVLDVNKTRQIAQEIVK 141

Query: 306 ALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
            +  LH +GI+H+D+K  N  +    V   + DF L 
Sbjct: 142 GMGYLHAKGILHKDLKSKNVFYDNGKVV--ITDFGLF 176

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 26/171 (15%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHANASKH--YVSNELRMLERFGGKNFIIKYEG 264
           G G Y  V   R K    + A++       N  +   +V  E  + E+     F++    
Sbjct: 61  GRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHS 120

Query: 265 CFKCGDSDCFVLE---------HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGI 315
           CF+      FV+E         H++  R      ++     ++Y   +  AL  LH++GI
Sbjct: 121 CFQTESRLFFVIEYVNGGDLMFHMQRQR------KLPEEHARFYSAEISLALNYLHERGI 174

Query: 316 VHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           ++RD+K  N L      +G+  L D+ +   G       +T  GT  Y+ P
Sbjct: 175 IYRDLKLDNVLLDS---EGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAP 222

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 31/174 (17%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPH------ANASKHYVSNELRMLERFGGKNFIIKYE 263
           G G +G V   + KN   V A+K  +         +  +   E  +L   G   +I    
Sbjct: 83  GRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFR-EERDVLVN-GDSKWITTLH 140

Query: 264 GCFKCGDSDCFVLEHV----------KHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQ 313
             F+  ++   V+++           K +        +     ++Y   +  A+ S+H+ 
Sbjct: 141 YAFQDDNNLYLVMDYYVGGDLLTLLSKFEDR------LPEEMARFYLAEMVIAIDSVHQL 194

Query: 314 GIVHRDVKPGNFLFSCKAVKGY--LIDFNLAM-VGFDGSFNQATLPGT-KYVPP 363
             VHRD+KP N L       G+  L DF   + +  DG+   +   GT  Y+ P
Sbjct: 195 HYVHRDIKPDNILMDM---NGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISP 245

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 35/169 (20%), Positives = 60/169 (35%), Gaps = 47/169 (27%)

Query: 539 LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQ----GPKLDIWSAGVTLLYLMI-GRTPFF 593
           L+ +G  +      GT  + +PE+L   +      GP+ D WS GV  +Y M+ G TPF+
Sbjct: 225 LMEDGTVQSSVAV-GTPDYISPEILQAMEGGKGRYGPECDWWSLGV-CMYEMLYGETPFY 282

Query: 594 GDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDF 653
            +                     K+ N +  F                         P  
Sbjct: 283 AESLVETYG--------------KIMNHKERFQ-----------------------FPTQ 305

Query: 654 LEVIPSSLFDLVDKCLTVNP-RL-RISAEDALKHEFFAPCH-EMLRKQK 699
           +  +  +  DL+ + +     RL +   ED  KH FF+    + +R  +
Sbjct: 306 VTDVSENAKDLIRRLICSREHRLGQNGIEDFKKHPFFSGIDWDNIRNCE 354

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 39/130 (30%)

Query: 559 APEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKL 618
           APE+L R +     +D+WS G+ L  ++ G  P +  P  + +                 
Sbjct: 175 APELLKRREFHAEPVDVWSCGIVLTAMLAGELP-WDQPSDSCQ----------------- 216

Query: 619 HNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRIS 678
                      Y+        L  W K           I S+   L+ K L  NP  RI+
Sbjct: 217 ----------EYSDWKEKKTYLNPWKK-----------IDSAPLALLHKILVENPSARIT 255

Query: 679 AEDALKHEFF 688
             D  K  ++
Sbjct: 256 IPDIKKDRWY 265

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 20/152 (13%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVSNELRMLERFGGKNFIIKYEGCF 266
           G G YG V  A  +     VA+K      A      +  E+ + +    +N ++K+ G  
Sbjct: 16  GEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN-VVKFYGHR 74

Query: 267 KCGDSDCFVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRALAS----LHKQGIVHR 318
           + G+     LE+       DR       +     Q +    F  L +    LH  GI HR
Sbjct: 75  REGNIQYLFLEYCSGGELFDRI-EPDIGMPEPDAQRF----FHQLMAGVVYLHGIGITHR 129

Query: 319 DVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGS 349
           D+KP N L   +  +K  + DF LA V    +
Sbjct: 130 DIKPENLLLDERDNLK--ISDFGLATVFRYNN 159

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 21/170 (12%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHANASKH--YVSNELRMLERFGGKN-FIIKYE 263
           G GG+G V+  + K  G + A K          K       E ++L +    + FI+   
Sbjct: 194 GRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAK--VHSRFIVSLA 251

Query: 264 GCFKCGDSDCFVLEHVK------H-DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIV 316
             F+     C V+  +       H    +         +  +Y   +   L  LH++ I+
Sbjct: 252 YAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNII 311

Query: 317 HRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           +RD+KP N L       G   + D  LA+    G        GT  ++ P
Sbjct: 312 YRDLKPENVLLDD---DGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAP 358

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 28/144 (19%), Positives = 43/144 (29%), Gaps = 46/144 (31%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSED 611
           GT GF APE+L   ++    +D ++ GV  LY MI  R PF    E+             
Sbjct: 351 GTPGFMAPELLLGEEY-DFSVDYFALGV-TLYEMIAARGPFRARGEKVENK--------- 399

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                           +L        +  P+                 +  D  +  L  
Sbjct: 400 ----------------ELKQRVLEQAVTYPDK-------------FSPASKDFCEALLQK 430

Query: 672 NPRLRI-----SAEDALKHEFFAP 690
           +P  R+     S +    H  F  
Sbjct: 431 DPEKRLGFRDGSCDGLRTHPLFRD 454

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 28/165 (16%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYV-SNELRMLERFGGKNFII- 260
           +++ ++ GSGG+G +Y A   N     A         ++    +EL+  +R   K+ I  
Sbjct: 39  WVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKK 98

Query: 261 -------------KYEGC----FKCGDSDCFVLEHVKHDRPEVLKKEIDLS-----QLQW 298
                         + G     FK       V+E +  D  ++  +          QL  
Sbjct: 99  WIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQL-- 156

Query: 299 YGYCLFRALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
            G  +   L  +H+   VH D+K  N L   K   + YL D+ L+
Sbjct: 157 -GIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLS 200

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 60.5 bits (147), Expect = 9e-10
 Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 31/174 (17%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC------PHANASKHYVSNELRMLERFGGKN-FIIKY 262
           G G +  V   + K  G V A+K               +   E  +L    G   +I + 
Sbjct: 70  GRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFRE-ERDVLVN--GDRRWITQL 126

Query: 263 EGCFKCGDSDCFVLEHVK------HDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQ 313
              F+  +    V+E+              L K    I     ++Y   +  A+ S+H+ 
Sbjct: 127 HFAFQDENYLYLVMEYYVGGDLLTL-----LSKFGERIPAEMARFYLAEIVMAIDSVHRL 181

Query: 314 GIVHRDVKPGNFLFSCKAVKGY--LIDFNLAM-VGFDGSFNQATLPGT-KYVPP 363
           G VHRD+KP N L       G+  L DF   + +  DG+       GT  Y+ P
Sbjct: 182 GYVHRDIKPDNILLD---RCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSP 232

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 24/149 (16%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHANASKH--YVSNELRMLERFGGKNFIIKYEG 264
           G GG+G V   + +  G + A K          K      NE ++LE+   + F++    
Sbjct: 193 GKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSR-FVVSLAY 251

Query: 265 CFKCGDSDCFVLE---------HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGI 315
            ++  D+ C VL          H+ H      +     ++  +Y   +   L  LH++ I
Sbjct: 252 AYETKDALCLVLTLMNGGDLKFHIYHMG----QAGFPEARAVFYAAEICCGLEDLHRERI 307

Query: 316 VHRDVKPGNFLFSCKAVKGY--LIDFNLA 342
           V+RD+KP N L       G+  + D  LA
Sbjct: 308 VYRDLKPENILLDD---HGHIRISDLGLA 333

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 47.9 bits (114), Expect = 9e-06
 Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 46/144 (31%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSED 611
           GT G+ APEV+   ++     D W+ G  LLY MI G++PF    ++  ++         
Sbjct: 347 GTVGYMAPEVVKNERY-TFSPDWWALGC-LLYEMIAGQSPFQQRKKKIKRE--------- 395

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                           ++       P    E                     L  + L  
Sbjct: 396 ----------------EVERLVKEVPEEYSER-------------FSPQARSLCSQLLCK 426

Query: 672 NPRLRI-----SAEDALKHEFFAP 690
           +P  R+     SA +  +H  F  
Sbjct: 427 DPAERLGCRGGSAREVKEHPLFKK 450

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 46/143 (32%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAK--LRGSE 610
           G   + APE+    ++ GP++D+WS GV L  L+ G  PF     QN+K++ +  LRG  
Sbjct: 175 GAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF---DGQNLKELRERVLRGK- 230

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                              Y         +P +             + +   +L+ + L 
Sbjct: 231 -------------------Y--------RIPFY-------------MSTDCENLLKRFLV 250

Query: 671 VNPRLRISAEDALKHEFFAPCHE 693
           +NP  R + E  +K  +    HE
Sbjct: 251 LNPIKRGTLEQIMKDRWINAGHE 273

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 41/164 (25%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK------CPHANASKHYVSNELRMLERFGGKNFIIK-Y 262
           G G +  V  AR    G  VAIK          +  K  +  E+R+++     N I+K +
Sbjct: 24  GKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQK--LFREVRIMKILNHPN-IVKLF 80

Query: 263 EGCFKCGDSDCFVLEH----------VKHDR-PEVLKKEIDLSQLQWYGYCLFRALAS-- 309
           E   +   +   ++E+          V H R  E   +              FR + S  
Sbjct: 81  E-VIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEAR------------SKFRQIVSAV 127

Query: 310 --LHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSF 350
              H++ IVHRD+K  N L      +K  + DF  +     G  
Sbjct: 128 QYCHQKRIVHRDLKAENLLLDADMNIK--IADFGFSNEFTVGGK 169

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 31/152 (20%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN---------ELRMLERFGGKNFII 260
           G G +G V+ A  K      AIK       K  V           E R+L       F+ 
Sbjct: 26  GKGSFGKVFLAEFKKTNQFFAIKA----LKKDVVLMDDDVECTMVEKRVLSLAWEHPFLT 81

Query: 261 KYEGCFKCGDSDCFVLEHVK------HDRPEVLKKE--IDLSQLQWYGYCLFRALASLHK 312
                F+  ++  FV+E++       H     ++     DLS+  +Y   +   L  LH 
Sbjct: 82  HMFCTFQTKENLFFVMEYLNGGDLMYH-----IQSCHKFDLSRATFYAAEIILGLQFLHS 136

Query: 313 QGIVHRDVKPGNFLFSCKAVKGY--LIDFNLA 342
           +GIV+RD+K  N L       G+  + DF + 
Sbjct: 137 KGIVYRDLKLDNILLDK---DGHIKIADFGMC 165

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 32/140 (22%), Positives = 48/140 (34%), Gaps = 46/140 (32%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSED 611
           GT  + APE+L   ++    +D WS GV LLY M+ G++PF G  E              
Sbjct: 180 GTPDYIAPEILLGQKY-NHSVDWWSFGV-LLYEMLIGQSPFHGQDE-------------- 223

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                          E+L+ +  +     P W             +     DL+ K    
Sbjct: 224 ---------------EELFHSIRMDNPFYPRW-------------LEKEAKDLLVKLFVR 255

Query: 672 NPRLRI-SAEDALKHEFFAP 690
            P  R+    D  +H  F  
Sbjct: 256 EPEKRLGVRGDIRQHPLFRE 275

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 24/170 (14%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHANASKH--YVSNELRMLERFGGKNFIIKYEG 264
           G G +G V  + RK    + A+K                  E R+L   G   F+ +   
Sbjct: 29  GKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHS 88

Query: 265 CFKCGDSDCFVLEHVK------HDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIV 316
           CF+  D   FV+E+V       H     +++          +Y   +   L  L  +GI+
Sbjct: 89  CFQTMDRLYFVMEYVNGGDLMYH-----IQQVGRFKEPHAVFYAAEIAIGLFFLQSKGII 143

Query: 317 HRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           +RD+K  N +      +G+  + DF +            T  GT  Y+ P
Sbjct: 144 YRDLKLDNVMLDS---EGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAP 190

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 50/144 (34%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM-IGRTPFFGDPEQNIKDIAKLRGSED 611
           GT  + APE++    + G  +D W+ GV LLY M  G+ PF G+ E              
Sbjct: 183 GTPDYIAPEIIAYQPY-GKSVDWWAFGV-LLYEMLAGQAPFEGEDE-------------- 226

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                          ++L+ +     +  P+              +      +    +T 
Sbjct: 227 ---------------DELFQSIMEHNVAYPKS-------------MSKEAVAICKGLMTK 258

Query: 672 NPRLRI-----SAEDALKHEFFAP 690
           +P  R+        D  +H FF  
Sbjct: 259 HPGKRLGCGPEGERDIKEHAFFRY 282

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 60.4 bits (146), Expect = 2e-09
 Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 24/170 (14%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHANASKH--YVSNELRMLERFGGKNFIIKYEG 264
           G G +G V  + RK    + A+K                  E R+L   G   F+ +   
Sbjct: 350 GKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHS 409

Query: 265 CFKCGDSDCFVLEHVK------HDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIV 316
           CF+  D   FV+E+V       H     +++          +Y   +   L  L  +GI+
Sbjct: 410 CFQTMDRLYFVMEYVNGGDLMYH-----IQQVGRFKEPHAVFYAAEIAIGLFFLQSKGII 464

Query: 317 HRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           +RD+K  N +      +G+  + DF +            T  GT  Y+ P
Sbjct: 465 YRDLKLDNVMLDS---EGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAP 511

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 41.9 bits (98), Expect = 7e-04
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNI 600
           GT  + APE++    + G  +D W+ GV LLY M+ G+ PF G+ E  +
Sbjct: 504 GTPDYIAPEIIAYQPY-GKSVDWWAFGV-LLYEMLAGQAPFEGEDEDEL 550

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 27/171 (15%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHANASKH--YVSNELRMLERFGGKN-FIIKYE 263
           G G +G V   R K  G   A+K        A     +   E R+L+    ++ F+   +
Sbjct: 14  GKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT--RHPFLTALK 71

Query: 264 GCFKCGDSDCFVLEHVK------HDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGI 315
             F+  D  CFV+E+        H     L +E      + ++YG  +  AL  LH + +
Sbjct: 72  YAFQTHDRLCFVMEYANGGELFFH-----LSRERVFTEERARFYGAEIVSALEYLHSRDV 126

Query: 316 VHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           V+RD+K  N +       G+  + DF L   G        T  GT +Y+ P
Sbjct: 127 VYRDIKLENLMLDK---DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAP 174

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 50/144 (34%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSED 611
           GT  + APEVL  + + G  +D W  GV ++Y M+ GR PF+                  
Sbjct: 167 GTPEYLAPEVLEDNDY-GRAVDWWGLGV-VMYEMMCGRLPFYNQDH-------------- 210

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                          E L+    +  I  P               +      L+   L  
Sbjct: 211 ---------------ERLFELILMEEIRFPRT-------------LSPEAKSLLAGLLKK 242

Query: 672 NPRLRI-----SAEDALKHEFFAP 690
           +P+ R+      A++ ++H FF  
Sbjct: 243 DPKQRLGGGPSDAKEVMEHRFFLS 266

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 44/175 (25%), Positives = 60/175 (34%), Gaps = 42/175 (24%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIK----------CPHANASKHYVSNELRMLER 252
           +      GSG +G V+ A  K     V +K          C   +     V+ E+ +L R
Sbjct: 26  YSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSR 85

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEH-----------VKHDR-PEVLKKEIDLSQLQWYG 300
               N IIK    F+       V+E             +H R  E L   I         
Sbjct: 86  VEHAN-IIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYI--------- 135

Query: 301 YCLFRALAS----LHKQGIVHRDVKPGNFLF-SCKAVKGYLIDFNLAMVGFDGSF 350
              FR L S    L  + I+HRD+K  N +      +K  LIDF  A     G  
Sbjct: 136 ---FRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIK--LIDFGSAAYLERGKL 185

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 48/138 (34%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
             GT  + APEVL  + ++GP+L++WS GVTL  L+    PF       +++  +     
Sbjct: 189 FCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPF-----CELEETVE----- 238

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                A +H                     P               +   L  LV   L 
Sbjct: 239 -----AAIH--------------------PPYL-------------VSKELMSLVSGLLQ 260

Query: 671 VNPRLRISAEDALKHEFF 688
             P  R + E  +   + 
Sbjct: 261 PVPERRTTLEKLVTDPWV 278

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 32/174 (18%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN---------ELRMLERFGGKNFII 260
           G G +G V  AR K  G + A+K       K  +           E R+L       F+ 
Sbjct: 32  GKGSFGKVMLARVKETGDLYAVKV----LKKDVILQDDDVECTMTEKRILSLARNHPFLT 87

Query: 261 KYEGCFKCGDSDCFVLEHVK------HDRPEVLKKE--IDLSQLQWYGYCLFRALASLHK 312
           +   CF+  D   FV+E V       H     ++K    D ++ ++Y   +  AL  LH 
Sbjct: 88  QLFCCFQTPDRLFFVMEFVNGGDLMFH-----IQKSRRFDEARARFYAAEIISALMFLHD 142

Query: 313 QGIVHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           +GI++RD+K  N L      +G+  L DF +   G       AT  GT  Y+ P
Sbjct: 143 KGIIYRDLKLDNVLLDH---EGHCKLADFGMCKEGICNGVTTATFCGTPDYIAP 193

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNI 600
           GT  + APE+L    + GP +D W+ GV LLY M+ G  PF  + E ++
Sbjct: 186 GTPDYIAPEILQEMLY-GPAVDWWAMGV-LLYEMLCGHAPFEAENEDDL 232

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 38/175 (21%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYV---------SNELRMLERFGGKN-FI 259
           G+G +G V+  R +++G   A+K       K  V         ++E  ML      + FI
Sbjct: 15  GTGSFGRVHLIRSRHNGRYYAMKV----LKKEIVVRLKQVEHTNDERLMLSIV--THPFI 68

Query: 260 IKYEGCFKCGDSDCFVLEHVK------HDRPEVLKKE--IDLSQLQWYGYCLFRALASLH 311
           I+  G F+       ++++++            L+K         ++Y   +  AL  LH
Sbjct: 69  IRMWGTFQDAQQIFMIMDYIEGGELFSL-----LRKSQRFPNPVAKFYAAEVCLALEYLH 123

Query: 312 KQGIVHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
            + I++RD+KP N L       G+  + DF  A    D ++   TL GT  Y+ P
Sbjct: 124 SKDIIYRDLKPENILLD---KNGHIKITDFGFAKYVPDVTY---TLCGTPDYIAP 172

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 34/137 (24%), Positives = 45/137 (32%), Gaps = 43/137 (31%)

Query: 553 GTKGFRAPEVLFRSQH-QGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
           G+  F+ PE+        G K+DIWSAGVTL  +  G  PF GD      +I KL     
Sbjct: 173 GSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD------NIYKLF---- 222

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                 +     + P D                                L DL+   L  
Sbjct: 223 ----ENIGKGSYAIPGDC----------------------------GPPLSDLLKGMLEY 250

Query: 672 NPRLRISAEDALKHEFF 688
            P  R S     +H +F
Sbjct: 251 EPAKRFSIRQIRQHSWF 267

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 25/179 (13%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK------CPHANASKHYVSNELRMLERFGGKNFIIK-Y 262
           G G YG V            A+K             +  V  E+++L R   KN +I+  
Sbjct: 14  GEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKN-VIQLV 72

Query: 263 EGCFKCGDSDCF-VLEHVKHDRPEVLKKEIDLSQLQ-WYGYCLFR----ALASLHKQGIV 316
           +  +       + V+E+      E+L   +   +      +  F      L  LH QGIV
Sbjct: 73  DVLYNEEKQKMYMVMEYCVCGMQEMLDS-VPEKRFPVCQAHGYFCQLIDGLEYLHSQGIV 131

Query: 317 HRDVKPGNFLFSCKA-VKGYLIDF---NLAMVGFDGSFNQATLPGT-KYVPP--VNGRK 368
           H+D+KPGN L +    +K  +                  + T  G+  + PP   NG  
Sbjct: 132 HKDIKPGNLLLTTGGTLK--ISALGVAEALHPFAADDTCR-TSQGSPAFQPPEIANGLD 187

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 36/136 (26%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APEVL R ++ G   D+WS GVTL  +++G  PF  +  +  +D  K       
Sbjct: 179 GTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPF--EDPEEPRDYRKTIQ---- 232

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
               ++ + + S P+D+          +   C                   L+ +    +
Sbjct: 233 ----RILSVKYSIPDDIR---------ISPECC-----------------HLISRIFVAD 262

Query: 673 PRLRISAEDALKHEFF 688
           P  RIS  +   H +F
Sbjct: 263 PATRISIPEIKTHSWF 278

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 30/150 (20%), Positives = 50/150 (33%), Gaps = 14/150 (9%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC-PHANASKHYVSNELRMLERFGGKNFIIK-YEGCFK 267
           GSG +G     R K    +VA+K      A    V  E+         N I++  E    
Sbjct: 29  GSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPN-IVRFKE-VIL 86

Query: 268 CGDSDCFVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPG 323
                  ++E+       +R           + +++   L   ++  H   I HRD+K  
Sbjct: 87  TPTHLAIIMEYASGGELYERI-CNAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLE 145

Query: 324 NFLFSCKA---VKGYLIDFNLAMVGFDGSF 350
           N L        +K  + DF  +      S 
Sbjct: 146 NTLLDGSPAPRLK--ICDFGYSKSSVLHSQ 173

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 44/187 (23%), Positives = 71/187 (37%), Gaps = 36/187 (19%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-PHANASKHYVSNELRMLERFGGKNFIIK 261
             + E +  G +G V++A+       VA+K  P  +        E+  L     +N I++
Sbjct: 26  LQLLEVKARGRFGCVWKAQL--LNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHEN-ILQ 82

Query: 262 YEGCFKCGDSD----CFVLEHVKHDR---PEVLKKE-IDLSQLQWYGYCLFRALASLH-- 311
           + G  K G S       +     H++    + LK   +  ++L      + R LA LH  
Sbjct: 83  FIGAEKRGTSVDVDLWLITAF--HEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHED 140

Query: 312 --------KQGIVHRDVKPGNFL----FSCKAVKGYLIDFNLAMVGFDGSFNQATLP--G 357
                   K  I HRD+K  N L     +       + DF LA+    G     T    G
Sbjct: 141 IPGLKDGHKPAISHRDIKSKNVLLKNNLTAC-----IADFGLALKFEAGKSAGDTHGQVG 195

Query: 358 TK-YVPP 363
           T+ Y+ P
Sbjct: 196 TRRYMAP 202

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 28/172 (16%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHANASKH--YVSNELRMLERFGGKN-FIIKYE 263
           G G +G V   + K  G   A+K        A     +   E R+L+    ++ F+   +
Sbjct: 157 GKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNS--RHPFLTALK 214

Query: 264 GCFKCGDSDCFVLEHVK------HDRPEVLKKE--IDLSQLQWYGYCLFRALASLH-KQG 314
             F+  D  CFV+E+        H     L +E      + ++YG  +  AL  LH ++ 
Sbjct: 215 YSFQTHDRLCFVMEYANGGELFFH-----LSRERVFSEDRARFYGAEIVSALDYLHSEKN 269

Query: 315 IVHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           +V+RD+K  N +       G+  + DF L   G        T  GT +Y+ P
Sbjct: 270 VVYRDLKLENLMLDK---DGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAP 318

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 50/144 (34%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSED 611
           GT  + APEVL  + + G  +D W  GV ++Y M+ GR PF+                  
Sbjct: 311 GTPEYLAPEVLEDNDY-GRAVDWWGLGV-VMYEMMCGRLPFYNQDH-------------- 354

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                          E L+    +  I  P               +      L+   L  
Sbjct: 355 ---------------EKLFELILMEEIRFPRT-------------LGPEAKSLLSGLLKK 386

Query: 672 NPRLRI-----SAEDALKHEFFAP 690
           +P+ R+      A++ ++H FFA 
Sbjct: 387 DPKQRLGGGSEDAKEIMQHRFFAG 410

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 56.8 bits (138), Expect = 6e-09
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 42/130 (32%)

Query: 559 APEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKL 618
           APEV+    + GP++DIWS GV L  L+ G  PF  +       +  L          K+
Sbjct: 178 APEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE------HVPTLF--------KKI 223

Query: 619 HNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRIS 678
                      +         +PE+             +  S+  L+   L V+P  R +
Sbjct: 224 RGGV-------F--------YIPEY-------------LNRSVATLLMHMLQVDPLKRAT 255

Query: 679 AEDALKHEFF 688
            +D  +HE+F
Sbjct: 256 IKDIREHEWF 265

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK-------CPHANASKHYVSNELRMLERFGGKNFIIK- 261
           G G +G V     +  G  VA+K              K  +  E++ L+ F   + IIK 
Sbjct: 20  GVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGK--IKREIQNLKLFRHPH-IIKL 76

Query: 262 YEGCFKCGDSDCFVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
           Y+           V+E+V      D        ++  + +     +  A+   H+  +VH
Sbjct: 77  YQ-VISTPTDFFMVMEYVSGGELFDYI-CKHGRVEEMEARRLFQQILSAVDYCHRHMVVH 134

Query: 318 RDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSF 350
           RD+KP N L       K  + DF L+ +  DG F
Sbjct: 135 RDLKPENVLLDAHMNAK--IADFGLSNMMSDGEF 166

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 56.8 bits (138), Expect = 6e-09
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 23/168 (13%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPH-----ANASKHYVSNELRMLERFGGKNFIIKYEG 264
           G G +G VY AR K +  ++A+K            +H +  E+ +       N I++   
Sbjct: 23  GKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPN-ILRMYN 81

Query: 265 CFKCGDSDC--FVLEHVKHDRPEV---LKKEIDLSQLQ--WYGYCLFRALASLHKQGIVH 317
            F   D      +LE     R E+   L+K     + +   +   L  AL   H++ ++H
Sbjct: 82  YFH--DRKRIYLMLEFAP--RGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIH 137

Query: 318 RDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           RD+KP N L   K  +K  + DF  ++        + T+ GT  Y+PP
Sbjct: 138 RDIKPENLLMGYKGELK--IADFGWSVHAPSLR--RRTMCGTLDYLPP 181

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 47/138 (34%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLY-LMIGRTPFFGDPEQNI-KDIAKLRGSE 610
           GT  +  PE++    H   K+D+W AGV L Y  ++G  PF         + I  +    
Sbjct: 174 GTLDYLPPEMIEGKTH-DEKVDLWCAGV-LCYEFLVGMPPFDSPSHTETHRRIVNVD--- 228

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                                      +  P +             +     DL+ K L 
Sbjct: 229 ---------------------------LKFPPF-------------LSDGSKDLISKLLR 248

Query: 671 VNPRLRISAEDALKHEFF 688
            +P  R+  +  ++H + 
Sbjct: 249 YHPPQRLPLKGVMEHPWV 266

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 46/162 (28%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHY------VSNELRMLER 252
           +F    +EE  G GG+G VYRA     G  VA+K    +  +        V  E ++   
Sbjct: 5   DFAELTLEEIIGIGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAM 62

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKH-DRPEVL-KKEIDLSQLQWYGYCLFRALASL 310
               N II   G      + C V+E  +      VL  K I    L  +   + R +  L
Sbjct: 63  LKHPN-IIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYL 121

Query: 311 HKQG---IVHRDVKPGNFLFSCKAVKGYLI-------DFNLA 342
           H +    I+HRD+K  N L   K   G L        DF LA
Sbjct: 122 HDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA 163

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 31/114 (27%)

Query: 552 AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSED 611
           AG   + APEV+ R+       D+WS GV L  L+ G  PF G           + G   
Sbjct: 175 AGAYAWMAPEVI-RASMFSKGSDVWSYGVLLWELLTGEVPFRG-----------IDGLAV 222

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLIT--------KRPDFLEVI 657
            + VA                  +P      + KL+          RP F  ++
Sbjct: 223 AYGVAMNKLA----LP-------IPSTCPEPFAKLMEDCWNPDPHSRPSFTNIL 265

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 31/152 (20%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSN---------ELRMLERFGGKNFII 260
           G G +G V  AR K +    A+K       K  +           E  +L +     F++
Sbjct: 47  GKGSFGKVLLARHKAEEVFYAVKV----LQKKAILKKKEEKHIMSERNVLLKNVKHPFLV 102

Query: 261 KYEGCFKCGDSDCFVLEHVK------HDRPEVLKKE--IDLSQLQWYGYCLFRALASLHK 312
                F+  D   FVL+++       H     L++E      + ++Y   +  AL  LH 
Sbjct: 103 GLHFSFQTADKLYFVLDYINGGELFYH-----LQRERCFLEPRARFYAAEIASALGYLHS 157

Query: 313 QGIVHRDVKPGNFLFSCKAVKGY--LIDFNLA 342
             IV+RD+KP N L      +G+  L DF L 
Sbjct: 158 LNIVYRDLKPENILLDS---QGHIVLTDFGLC 186

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 49/143 (34%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSED 611
           GT  + APEVL +  +    +D W  G  +LY M+ G  PF+                  
Sbjct: 201 GTPEYLAPEVLHKQPY-DRTVDWWCLGA-VLYEMLYGLPPFYSRNT-------------- 244

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
                           ++Y      P+ L                I +S   L++  L  
Sbjct: 245 ---------------AEMYDNILNKPLQLKPN-------------ITNSARHLLEGLLQK 276

Query: 672 NPRLRI----SAEDALKHEFFAP 690
           +   R+       +   H FF+ 
Sbjct: 277 DRTKRLGAKDDFMEIKSHVFFSL 299

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 26/181 (14%), Positives = 55/181 (30%), Gaps = 38/181 (20%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-----CPHANASKHYVSNELRMLERF 253
           +F+      +      G +++ R +  G  + +K           S+ + + E   L  F
Sbjct: 8   DFKQLNFLTKLNENHSGELWKGRWQ--GNDIVVKVLKVRDWSTRKSRDF-NEECPRLRIF 64

Query: 254 GGKNFIIKYEGCFKCGDSD--CFVLE--------HVKHDRPEVLKKEIDLSQLQWYGYCL 303
              N ++   G  +   +     +          +V H+        +D SQ   +   +
Sbjct: 65  SHPN-VLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGT---NFVVDQSQAVKFALDM 120

Query: 304 FRALASLHKQG--IVHRDVKPGNFLFSCKAVKGYLIDFNL----AMVGFDGSFNQATLPG 357
            R +A LH     I    +   +           +ID ++    +M     SF       
Sbjct: 121 ARGMAFLHTLEPLIPRHALNSRSV----------MIDEDMTARISMADVKFSFQSPGRMY 170

Query: 358 T 358
            
Sbjct: 171 A 171

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 33/169 (19%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTV-----VAIKCPHANASKHYVSNELRMLERFGGKN 257
           + V    G GG+G +Y A   +  +V       +K   ++     +  EL+  +R     
Sbjct: 37  WKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGP--LFTELKFYQRAAKPE 94

Query: 258 FIIKYEGCFKCGDSD-----CFVLEHVKHDRPEVLKKEI---DLSQLQWYGYC------- 302
            I K+    K             L          +  +    DL ++  Y          
Sbjct: 95  QIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKI--YEANAKRFSRK 152

Query: 303 --------LFRALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
                   +   L  +H+   VH D+K  N L + K   + YL+D+ LA
Sbjct: 153 TVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLA 201

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 30/155 (19%), Positives = 53/155 (34%), Gaps = 50/155 (32%)

Query: 559 APEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKL 618
           APEV+    + GP++D+WS G+ L  +++GR PF  +                       
Sbjct: 175 APEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDE----------------------- 211

Query: 619 HNRESSFPEDLYAAKSLPPINLPEWCKLITK----RPDFLEVIPSSLFDLVDKCLTVNPR 674
                                +P   K +       PDFL         L+ + +  +P 
Sbjct: 212 --------------------FIPNLFKKVNSCVYVMPDFL---SPGAQSLIRRMIVADPM 248

Query: 675 LRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDN 709
            RI+ ++  +  +F        +     QGS  D+
Sbjct: 249 QRITIQEIRRDPWFNVNLPDYLRPMEEVQGSYADS 283

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 40/166 (24%), Positives = 59/166 (35%), Gaps = 45/166 (27%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK-------CPHANASKHYVSNELRMLERFGGKNFIIK- 261
           G G +G V  A        VA+K              +  V  E+  L+     + IIK 
Sbjct: 18  GEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMR--VEREISYLKLLRHPH-IIKL 74

Query: 262 YEGCFKCGDSDCFVLEH---------VKHDR---PEVLKKEIDLSQLQWYGYCLFR---- 305
           Y+           V+E+         V+  R    E  +               F+    
Sbjct: 75  YD-VITTPTDIVMVIEYAGGELFDYIVEKKRMTEDEGRRF--------------FQQIIC 119

Query: 306 ALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSF 350
           A+   H+  IVHRD+KP N L      VK  + DF L+ +  DG+F
Sbjct: 120 AIEYCHRHKIVHRDLKPENLLLDDNLNVK--IADFGLSNIMTDGNF 163

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 37/173 (21%), Positives = 57/173 (32%), Gaps = 32/173 (18%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC-PHANASKHYVSNELRMLERFGGKNFIIKYEGCFKC 268
           G G YG V+R   +  G  VA+K     +    +   EL        +N I+ +      
Sbjct: 17  GKGRYGEVWRGSWQ--GENVAVKIFSSRDEKSWFRETELYNTVMLRHEN-ILGFIASDMT 73

Query: 269 GDSD----CFVLEHVKHDR---PEVLKK-EIDLSQLQWYGYCLFRALASLH--------K 312
                     +  +  H+     + L+   +D          +   LA LH        K
Sbjct: 74  SRHSSTQLWLITHY--HEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGK 131

Query: 313 QGIVHRDVKPGNFL----FSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYV 361
             I HRD+K  N L      C      + D  LA++    S NQ  +     V
Sbjct: 132 PAIAHRDLKSKNILVKKNGQCC-----IADLGLAVM-HSQSTNQLDVGNNPRV 178

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 50/134 (37%)

Query: 559 APEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKL 618
           APEV+    + GP++DIWS+GV L  L+ G  PF  D                       
Sbjct: 183 APEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD----------------------- 219

Query: 619 HNRESSFPEDLYAAKSLPPINLPEWCKLITK----RPDFLEVIPSSLFDLVDKCLTVNPR 674
                               ++P   K I       P +L     S+  L+   L V+P 
Sbjct: 220 --------------------HVPTLFKKICDGIFYTPQYL---NPSVISLLKHMLQVDPM 256

Query: 675 LRISAEDALKHEFF 688
            R + +D  +HE+F
Sbjct: 257 KRATIKDIREHEWF 270

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 46/167 (27%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIK-------CPHANASKHYVSNELRMLERFGGKNFIIK- 261
           G G +G V   + +  G  VA+K              K  +  E++ L+ F   + IIK 
Sbjct: 25  GVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGK--IRREIQNLKLFRHPH-IIKL 81

Query: 262 YEGCFKCGDSDCFVLEH----------VKHDR---PEVLKKEIDLSQLQWYGYCLFR--- 305
           Y+           V+E+           K+ R    E  +               F+   
Sbjct: 82  YQ-VISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRL--------------FQQIL 126

Query: 306 -ALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSF 350
             +   H+  +VHRD+KP N L       K  + DF L+ +  DG F
Sbjct: 127 SGVDYCHRHMVVHRDLKPENVLLDAHMNAK--IADFGLSNMMSDGEF 171

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 25/171 (14%), Positives = 46/171 (26%), Gaps = 37/171 (21%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTV--------VAIKCPHANASKHYVSN--------- 245
           + ++  +     G +Y A   +  T          ++K    +       N         
Sbjct: 44  WKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPL 103

Query: 246 ELRMLERFGGKNF--IIKYEGCFKCGDSDCFV--------LEHVKHDRPEVLKKEIDLS- 294
           ++   ++        I    G     D   F+        L+      P   K  +    
Sbjct: 104 QVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSP---KHVLSERS 160

Query: 295 --QLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC-KAVKGYLIDFNLA 342
             Q+      L  AL  LH+   VH +V   N         +  L  +  A
Sbjct: 161 VLQV---ACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFA 208

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 54.5 bits (132), Expect = 4e-08
 Identities = 38/189 (20%), Positives = 62/189 (32%), Gaps = 52/189 (27%)

Query: 205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF----------- 253
           + ++ G GG  TVY A        VAIK             E   L+RF           
Sbjct: 15  IVDKLGGGGMSTVYLAEDTILNIKVAIKAIFI----PPREKE-ETLKRFEREVHNSSQLS 69

Query: 254 -------------GGKNFIIKYEGCFKCGDSDCFVLEHVK-HDRPEVLKKE--IDLSQLQ 297
                            ++               V+E+++     E ++    + +    
Sbjct: 70  HQNIVSMIDVDEEDDCYYL---------------VMEYIEGPTLSEYIESHGPLSVDTAI 114

Query: 298 WYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQ-ATL 355
            +   +   +   H   IVHRD+KP N L      +K  + DF +A    + S  Q   +
Sbjct: 115 NFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLK--IFDFGIAKALSETSLTQTNHV 172

Query: 356 PGT-KYVPP 363
            GT +Y  P
Sbjct: 173 LGTVQYFSP 181

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 38/179 (21%), Positives = 63/179 (35%), Gaps = 34/179 (18%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC-PHANASKHYVSNELRMLERFGGKNFIIKYEG-CFK 267
           G G +G V+R + +  G  VA+K          +   E+        +N I+ +     K
Sbjct: 51  GKGRFGEVWRGKWR--GEEVAVKIFSSREERSWFREAEIYQTVMLRHEN-ILGFIAADNK 107

Query: 268 CGDSD---CFVLE-HVKHDRPEVLKKE-IDLSQLQWYGYCLFRALASLH--------KQG 314
              +      V + H      + L +  + +  +          LA LH        K  
Sbjct: 108 DNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA 167

Query: 315 IVHRDVKPGNFL----FSCKAVKGYLIDFNLAMVGFDGSFNQATLP-----GTK-YVPP 363
           I HRD+K  N L     +C      + D  LA+   D + +   +      GTK Y+ P
Sbjct: 168 IAHRDLKSKNILVKKNGTCC-----IADLGLAVR-HDSATDTIDIAPNHRVGTKRYMAP 220

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 24/135 (17%)

Query: 210 GSGGYGTVYRARR---KNDGTVVAIKC-------PHANASKHYVSNELRMLERFGGKNFI 259
           G+G YG V+  R+    + G + A+K          A  ++H    E ++LE      F+
Sbjct: 63  GTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEH-TRTERQVLEHIRQSPFL 121

Query: 260 IKYEGCFKCGDSDCFVLEHVK------HDRPEVLKKEI--DLSQLQWYGYCLFRALASLH 311
           +     F+       +L+++       H     L +       ++Q Y   +  AL  LH
Sbjct: 122 VTLHYAFQTETKLHLILDYINGGELFTH-----LSQRERFTEHEVQIYVGEIVLALEHLH 176

Query: 312 KQGIVHRDVKPGNFL 326
           K GI++RD+K  N L
Sbjct: 177 KLGIIYRDIKLENIL 191

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 43/182 (23%), Positives = 69/182 (37%), Gaps = 40/182 (21%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-----CPHANASKHYVSNELRMLERF 253
                 V +  GSG +GTVY+ +   D   VA+K      P     + +  NE+ +L + 
Sbjct: 22  PDGQITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFK-NEVGVLRKT 77

Query: 254 GGKNFIIKYEGC-----------FKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYC 302
              N I+ + G            +  G S    L H  H      + + ++ +L      
Sbjct: 78  RHVN-ILLFMGYSTAPQLAIVTQWCEGSS----LYHHLHAS----ETKFEMKKLIDIARQ 128

Query: 303 LFRALASLHKQGIVHRDVKPGNFL----FSCKAVKGYLIDFNLA--MVGFDGSFNQATLP 356
             R +  LH + I+HRD+K  N       + K     + DF LA     + GS     L 
Sbjct: 129 TARGMDYLHAKSIIHRDLKSNNIFLHEDNTVK-----IGDFGLATEKSRWSGSHQFEQLS 183

Query: 357 GT 358
           G+
Sbjct: 184 GS 185

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 32/118 (27%)

Query: 552 AGTKGFRAPEVLFRSQHQGP---KLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLR 607
           +G+  + APEV+ R Q   P   + D+++ G+ L  LM G+ P+   +    I       
Sbjct: 183 SGSILWMAPEVI-RMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQI------- 234

Query: 608 GSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLIT--------KRPDFLEVI 657
               +  V +        P+      + P        +L+         +RP F  ++
Sbjct: 235 ----IEMVGRGSLS----PDLSKVRSNCP----KRMKRLMAECLKKKRDERPSFPRIL 280

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 34/179 (18%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC-PHANASKHYVSNELRMLERFGGKNFIIKYEG-CFK 267
           G G YG V+  + +  G  VA+K       +  +   E+        +N I+ +     K
Sbjct: 46  GKGRYGEVWMGKWR--GEKVAVKVFFTTEEASWFRETEIYQTVLMRHEN-ILGFIAADIK 102

Query: 268 CGDSD---CFVLE-HVKHDRPEVLKKE-IDLSQLQWYGYCLFRALASLH--------KQG 314
              S      + + H      + LK   +D   +    Y     L  LH        K  
Sbjct: 103 GTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPA 162

Query: 315 IVHRDVKPGNFL----FSCKAVKGYLIDFNLAMVGFDGSFNQATLP-----GTK-YVPP 363
           I HRD+K  N L     +C      + D  LA+  F    N+  +P     GTK Y+PP
Sbjct: 163 IAHRDLKSKNILVKKNGTCC-----IADLGLAVK-FISDTNEVDIPPNTRVGTKRYMPP 215

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 16/133 (12%), Positives = 28/133 (21%), Gaps = 13/133 (9%)

Query: 205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHYVSNELRMLERFGGKNFI 259
           +    G       ++A        VA+                  +    L R       
Sbjct: 35  LLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVA 94

Query: 260 IKYEGCFKCGDSD---CFVLEHVK-HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGI 315
              +       +      V E ++     EV                L  A  + H+ G+
Sbjct: 95  RVLD----VVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGV 150

Query: 316 VHRDVKPGNFLFS 328
                 P     S
Sbjct: 151 ALSIDHPSRVRVS 163

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 51.0 bits (123), Expect = 6e-07
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 33/176 (18%)

Query: 210 GSGGYGTVYRARR---KNDGTVVAIKC-------PHANASKHYVSNELRMLERFGGKN-F 258
           G GGYG V++ R+    N G + A+K         +A  + H    E  +LE    K+ F
Sbjct: 26  GKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAH-TKAERNILEEV--KHPF 82

Query: 259 IIKYEGCFKCGDSDCFVLEHVK------HDRPEVLKKEI--DLSQLQWYGYCLFRALASL 310
           I+     F+ G     +LE++             L++E         +Y   +  AL  L
Sbjct: 83  IVDLIYAFQTGGKLYLILEYLSGGELFMQ-----LEREGIFMEDTACFYLAEISMALGHL 137

Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           H++GI++RD+KP N + +    +G+  L DF L            T  GT +Y+ P
Sbjct: 138 HQKGIIYRDLKPENIMLNH---QGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAP 190

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNI 600
           GT  + APE+L RS H    +D WS G  L+Y M+ G  PF G+  +  
Sbjct: 183 GTIEYMAPEILMRSGH-NRAVDWWSLGA-LMYDMLTGAPPFTGENRKKT 229

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 305 RALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA-TLPGT-KYVP 362
            AL + H  G  HRDVKP N L S      YL+DF +A    D    Q     GT  Y+ 
Sbjct: 145 SALDAAHAAGATHRDVKPENILVS-ADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMA 203

Query: 363 P 363
           P
Sbjct: 204 P 204

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 21/174 (12%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS---NELRMLERFGGKN 257
           E  ++ E+ G G +G V+  R + D T+VA+K           +    E R+L+++   N
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN 173

Query: 258 FIIKYEG-CFKCGDSDCFVLEHVKH-DRPEVLKKE---IDLSQLQWYGYCLFRALASLHK 312
            I++  G C +       V+E V+  D    L+ E   + +  L          +  L  
Sbjct: 174 -IVRLIGVCTQ-KQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLES 231

Query: 313 QGIVHRDVKPGNFLFS----CKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVP 362
           +  +HRD+   N L +     K     + DF ++    DG +  +   G + VP
Sbjct: 232 KCCIHRDLAARNCLVTEKNVLK-----ISDFGMSREEADGVYAASG--GLRQVP 278

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 36/170 (21%), Positives = 60/170 (35%), Gaps = 35/170 (20%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRM--LERFGGK 256
           + ++  + E  G G YG VY+     D   VA+K      ++    NE  +  +      
Sbjct: 11  DLDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFA-NRQNFINEKNIYRVPLMEHD 67

Query: 257 NFIIKYEGCFKCGDSD-----CFVLEHVKHDR----PEVLKKEIDLSQLQWYGYCLFRAL 307
           N I ++    +   +D       V+E+  +        +     D        + + R L
Sbjct: 68  N-IARFIVGDERVTADGRMEYLLVMEY--YPNGSLXKYLSLHTSDWVSSCRLAHSVTRGL 124

Query: 308 ASLH---------KQGIVHRDVKPGNFL----FSCKAVKGYLIDFNLAMV 344
           A LH         K  I HRD+   N L     +C      + DF L+M 
Sbjct: 125 AYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCV-----ISDFGLSMR 169

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 46/166 (27%)

Query: 205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF----------- 253
           + E  G GG   V+ AR   D   VA+K   A        +      RF           
Sbjct: 16  LGEILGFGGMSEVHLARDLRDHRDVAVKVLRA----DLARDP-SFYLRFRREAQNAAALN 70

Query: 254 -------------GGKNFIIKYEGCFKCGDSDCFVLEHVK-HDRPEVLKKE--IDLSQLQ 297
                              + Y            V+E+V      +++  E  +   +  
Sbjct: 71  HPAIVAVYDTGEAETPAGPLPY-----------IVMEYVDGVTLRDIVHTEGPMTPKRAI 119

Query: 298 WYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
                  +AL   H+ GI+HRDVKP N + S   AVK  ++DF +A
Sbjct: 120 EVIADACQALNFSHQNGIIHRDVKPANIMISATNAVK--VMDFGIA 163

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 14/132 (10%)

Query: 201 ESFIVEEEEGSGGYGTVYRAR----RKNDGTVVAIKCPHANASKHYVSN---ELRMLERF 253
                  + G G +G V   R      N G  VA+K     +  +++++   E+ +L   
Sbjct: 21  RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL 80

Query: 254 GGKNFIIKYEGC--FKCGDSDCFVLEHVKH-DRPEVLKK---EIDLSQLQWYGYCLFRAL 307
             +N I+KY+G      G+    ++E +      E L K   +I+L Q   Y   + + +
Sbjct: 81  YHEN-IVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGM 139

Query: 308 ASLHKQGIVHRD 319
             L  +  VHRD
Sbjct: 140 DYLGSRQYVHRD 151

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 33/175 (18%)

Query: 210 GSGGYGTVYRARR---KNDGTVVAIKCPHANASKHYV--SNELRML-ER--FGGKN--FI 259
           G G +G V+  ++    +   + A+K       K  +   + +R   ER      N  FI
Sbjct: 33  GQGSFGKVFLVKKISGSDARQLYAMKV----LKKATLKVRDRVRTKMERDILVEVNHPFI 88

Query: 260 IKYEGCFKCGDSDCFVLEHVK------HDRPEVLKKEI--DLSQLQWYGYCLFRALASLH 311
           +K    F+       +L+ ++            L KE+      +++Y   L  AL  LH
Sbjct: 89  VKLHYAFQTEGKLYLILDFLRGGDLFTR-----LSKEVMFTEEDVKFYLAELALALDHLH 143

Query: 312 KQGIVHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
             GI++RD+KP N L      +G+  L DF L+    D      +  GT +Y+ P
Sbjct: 144 SLGIIYRDLKPENILLDE---EGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAP 195

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 16/132 (12%)

Query: 201 ESFIVEEEEGSGGYGTVYRAR----RKNDGTVVAIKCPHANASKHYVSN---ELRMLERF 253
                  + G G +G V            G +VA+K   A+A   + S    E+ +L   
Sbjct: 31  RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTL 90

Query: 254 GGKNFIIKYEGCFKCGDSD----CFVLEHVKH-DRPEVLKK-EIDLSQLQWYGYCLFRAL 307
             ++ IIKY+GC  C D+       V+E+V      + L +  I L+QL  +   +   +
Sbjct: 91  YHEH-IIKYKGC--CEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGM 147

Query: 308 ASLHKQGIVHRD 319
           A LH Q  +HRD
Sbjct: 148 AYLHAQHYIHRD 159

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 40/219 (18%), Positives = 72/219 (32%), Gaps = 16/219 (7%)

Query: 115 IRAVSPAAELPVTNRQLRKPSAKTKFLH-KDGIDPKGPKLQASRHNKAFDAKEKKQGKRD 173
           +  + P       +   R+ S     L  +      G           +     +     
Sbjct: 1   MSPIDPMGHH-HHHHGRRRASVAAGILVPRGSPGLDGICSIEELSTSLYKKAGSENLYFQ 59

Query: 174 QISRIMALKATGNHNDDQTNAKVLPNFESFIVEEEE--GSGGYGTVYRARRKNDG---TV 228
             + +    +  N    Q    V+    S IV   E  G G +G VY     ++      
Sbjct: 60  GANTVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIH 119

Query: 229 VAIKCPHANASKHYVS---NELRMLERFGGKNFIIKYEG-CFKCGDSDCFVLEHVKH-DR 283
            A+K  +       VS    E  +++ F   N ++   G C +   S   VL ++KH D 
Sbjct: 120 CAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN-VLSLLGICLRSEGSPLVVLPYMKHGDL 178

Query: 284 PEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRD 319
              ++ E     +  L  +G  + + +  L  +  VHRD
Sbjct: 179 RNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRD 217

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 26/156 (16%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCF 266
           G G +G VY+     DG  VA+K          + +   E+  L      + ++   G  
Sbjct: 48  GHGVFGKVYKGVL-RDGAKVALKRRTPESSQGIEEFE-TEIETLSFCRHPH-LVSLIGF- 103

Query: 267 KCGDSDCFVL--EHVKHD--RPEVLKKEIDLSQLQW---YGYCL--FRALASLHKQGIVH 317
            C + +  +L  +++++   +  +   ++    + W      C+   R L  LH + I+H
Sbjct: 104 -CDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIH 162

Query: 318 RDVKPGNFL----FSCKAVKGYLIDFNLAMVGFDGS 349
           RDVK  N L    F  K     + DF ++  G +  
Sbjct: 163 RDVKSINILLDENFVPK-----ITDFGISKKGTELD 193

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 22/140 (15%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDG---TVVAIK-CPHANASKHYVS---NELRMLERF 253
              I+ +  G G +G+V     K +      VA+K     N+S+  +    +E   ++ F
Sbjct: 34  NLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDF 93

Query: 254 GGKNFIIKYEG-CFKCGDSDCF----VLEHVKH---------DRPEVLKKEIDLSQLQWY 299
              N +I+  G C +           +L  +K+          R E   K I L  L  +
Sbjct: 94  SHPN-VIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKF 152

Query: 300 GYCLFRALASLHKQGIVHRD 319
              +   +  L  +  +HRD
Sbjct: 153 MVDIALGMEYLSNRNFLHRD 172

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 17/133 (12%)

Query: 201 ESFIVEEEEGSGGYGTVYRAR----RKNDGTVVAIKCPHANASKHYVS--NELRMLERFG 254
                 ++ G G +G+V   R    + N G VVA+K    +  +H      E+ +L+   
Sbjct: 10  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQ 69

Query: 255 GKNFIIKYEGCFKCGDSD----CFVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRA 306
             N I+KY+G   C  +       ++E++ +    D  +  K+ ID  +L  Y   + + 
Sbjct: 70  HDN-IVKYKGV--CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKG 126

Query: 307 LASLHKQGIVHRD 319
           +  L  +  +HRD
Sbjct: 127 MEYLGTKRYIHRD 139

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 210 GSGGYGTVYRARRKNDG---TVVAIKCPHANASKHYVS---NELRMLERFGGKNFIIKYE 263
           G G +G VY     ++       A+K  +       VS    E  +++ F   N ++   
Sbjct: 34  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN-VLSLL 92

Query: 264 G-CFKCGDSDCFVLEHVKH-DRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHR 318
           G C +   S   VL ++KH D    ++ E     +  L  +G  + + +  L  +  VHR
Sbjct: 93  GICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHR 152

Query: 319 D 319
           D
Sbjct: 153 D 153

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 17/133 (12%)

Query: 201 ESFIVEEEEGSGGYGTVYRAR----RKNDGTVVAIKCPHANASKHYVS--NELRMLERFG 254
                 ++ G G +G+V   R    + N G VVA+K    +  +H      E+ +L+   
Sbjct: 41  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQ 100

Query: 255 GKNFIIKYEGCFKCGDSD----CFVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRA 306
             N I+KY+G   C  +       ++E++ +    D  +  K+ ID  +L  Y   + + 
Sbjct: 101 HDN-IVKYKGV--CYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKG 157

Query: 307 LASLHKQGIVHRD 319
           +  L  +  +HRD
Sbjct: 158 MEYLGTKRYIHRD 170

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 38/159 (23%), Positives = 53/159 (33%), Gaps = 31/159 (19%)

Query: 188 NDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDG--TVVAIKCPHANASKHYVS- 244
           N D T   VL        ++  G G +G V +AR K DG     AIK     ASK     
Sbjct: 13  NPDPTIYPVLDW-NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRD 71

Query: 245 --NELRMLERFGG-KNFIIKYEGCFKCGDSD--CFVLEHVKH------------------ 281
              EL +L + G   N II   G   C         +E+  H                  
Sbjct: 72  FAGELEVLCKLGHHPN-IINLLGA--CEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPA 128

Query: 282 -DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRD 319
                     +   QL  +   + R +  L ++  +HRD
Sbjct: 129 FAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRD 167

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 22/140 (15%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANASKHYVS---NELRMLER 252
           E   +  E G G +G VY    K        T VAIK  +  AS        NE  +++ 
Sbjct: 25  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 84

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKH---------DRPEVLK----KEIDLSQLQWY 299
           F   + +++  G    G     ++E +            RP +          LS++   
Sbjct: 85  FNCHH-VVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQM 143

Query: 300 GYCLFRALASLHKQGIVHRD 319
              +   +A L+    VHRD
Sbjct: 144 AGEIADGMAYLNANKFVHRD 163

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 17/133 (12%)

Query: 201 ESFIVEEEEGSGGYGTVYRAR----RKNDGTVVAIKCPHANASKHYVS--NELRMLERFG 254
                  + G G +G+V   R      N G +VA+K    +          E+++L+   
Sbjct: 23  RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALH 82

Query: 255 GKNFIIKYEGCFKCGDSD----CFVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRA 306
               I+KY G              V+E++      D  +  +  +D S+L  Y   + + 
Sbjct: 83  SDF-IVKYRGV--SYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKG 139

Query: 307 LASLHKQGIVHRD 319
           +  L  +  VHRD
Sbjct: 140 MEYLGSRRCVHRD 152

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 44.9 bits (107), Expect = 6e-05
 Identities = 44/156 (28%), Positives = 62/156 (39%), Gaps = 36/156 (23%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS---NELRMLERFGGKNFIIKYEGCF 266
           G GG+G VY+ R   DGT+VA+K      ++        E+ M+     +N +++  G  
Sbjct: 39  GRGGFGKVYKGRLA-DGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN-LLRLRGF- 95

Query: 267 KCGDSDC------FV----LEHVKHDRPEVLKKEIDLSQLQW---YGYCL--FRALASLH 311
            C           ++    +     +RPE          L W       L   R LA LH
Sbjct: 96  -CMTPTERLLVYPYMANGSVASCLRERPE------SQPPLDWPKRQRIALGSARGLAYLH 148

Query: 312 KQG---IVHRDVKPGNFL--FSCKAVKGYLIDFNLA 342
                 I+HRDVK  N L     +AV G   DF LA
Sbjct: 149 DHCDPKIIHRDVKAANILLDEEFEAVVG---DFGLA 181

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 50/291 (17%), Positives = 85/291 (29%), Gaps = 103/291 (35%)

Query: 448 RKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAG 507
           R +    L++AL          PA                   +    +   G  V G+G
Sbjct: 133 RLQPYLKLRQALLELR------PAK-----------------NVL---ID--G--VLGSG 162

Query: 508 LMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQ 567
              K  + ++ L + L  K+       IF+L L N        C       +PE +    
Sbjct: 163 ---K--TWVA-LDVCLSYKVQCKMDFKIFWLNLKN--------C------NSPETVLEML 202

Query: 568 HQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPE 627
                         LLY +        D   NIK          +    +   +   +  
Sbjct: 203 ------------QKLLYQIDPNWTSRSDHSSNIK-----LRIHSIQAELRRLLKSKPYEN 245

Query: 628 ------DLYAAKSLPPINLPEWCK-LITKRP----DFLEVIPSSLFDLVDKCLTVNPRLR 676
                 ++  AK+    NL   CK L+T R     DFL    ++   L    +T+ P   
Sbjct: 246 CLLVLLNVQNAKAWNAFNLS--CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--- 300

Query: 677 ISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTTGNPSHKQCSARPLKIS 727
              ++           +  R Q L R+  + +              P ++S
Sbjct: 301 ---DEVK--SLLLKYLDC-RPQDLPREVLTTN--------------PRRLS 331

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 5e-04
 Identities = 41/261 (15%), Positives = 82/261 (31%), Gaps = 57/261 (21%)

Query: 53  VNYANKGTNAETSEYDTIVEGEEKEQFTDLGTTKRI--ENLVLPLDTTLI---DKPSLDN 107
           VN     T  E+S  + +   E ++ F  L     +   +  +P     +   D    D 
Sbjct: 350 VNCDKLTTIIESS-LNVLEPAEYRKMFDRLS----VFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 108 EHEID-------VDIRAVSPAAELPVTNRQLRKPSAKTKFLHKDGIDPKGPKLQASRHNK 160
              ++       V+ +       +P    +L+        LH+  +D            K
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-------HYNIPK 457

Query: 161 AFDAKEKKQGKRDQ--ISRIMA-LKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTV 217
            FD+ +      DQ   S I   LK   +         V  +F  F+             
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-RFL------------- 503

Query: 218 YRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCF--KCGDSDCFV 275
              + ++D T        A  +   + N L+ L+ +  K +I   +  +         F+
Sbjct: 504 -EQKIRHDST--------AWNASGSILNTLQQLKFY--KPYICDNDPKYERLVNAILDFL 552

Query: 276 LEHVKHDRPEVLKKEIDLSQL 296
            +  ++    +  K  DL ++
Sbjct: 553 PKIEEN---LICSKYTDLLRI 570

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 23/141 (16%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDG---TVVAIK-CPHANASKHYVS---NELRMLERF 253
           + F +    G G +G+V  A+ K +      VA+K       +   +     E   ++ F
Sbjct: 23  QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEF 82

Query: 254 GGKNFIIKYEG-CFKCGDSDCF-----VLEHVKH---------DRPEVLKKEIDLSQLQW 298
              + + K  G   +            +L  +KH          R       + L  L  
Sbjct: 83  DHPH-VAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVR 141

Query: 299 YGYCLFRALASLHKQGIVHRD 319
           +   +   +  L  +  +HRD
Sbjct: 142 FMVDIACGMEYLSSRNFIHRD 162

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 28/183 (15%), Positives = 44/183 (24%), Gaps = 53/183 (28%)

Query: 197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK----------HYVSNE 246
               E     E+ G G +G V++     D T VAIK                    +  E
Sbjct: 16  CLPTEKLQRCEKIGEGVFGEVFQTI--ADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPE 73

Query: 247 LRMLERFGGKN--------FIIKYEGCFKCGDSD-------------------------- 272
           + + +     +          I          S                           
Sbjct: 74  IIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFK 133

Query: 273 ------CFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNF 325
                     E    D  ++  K   L+  +   + L  +LA         HRD+  GN 
Sbjct: 134 DDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNV 193

Query: 326 LFS 328
           L  
Sbjct: 194 LLK 196

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 18/152 (11%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII 260
           +   + +  G G +G V     +  G  VA+KC   +A+      E  ++ +    N ++
Sbjct: 21  KELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDATAQAFLAEASVMTQLRHSN-LV 77

Query: 261 KYEG-CFKCGDSDCFVLEHVKH-DRPEVLK----KEIDLSQLQWYGYCLFRALASLHKQG 314
           +  G   +       V E++      + L+      +    L  +   +  A+  L    
Sbjct: 78  QLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN 137

Query: 315 IVHRDVKPGNFLFS----CKAVKGYLIDFNLA 342
            VHRD+   N L S     K     + DF L 
Sbjct: 138 FVHRDLAARNVLVSEDNVAK-----VSDFGLT 164

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 24/155 (15%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII 260
           +   + +  G G +G V     +  G  VA+KC   +A+      E  ++ +    N ++
Sbjct: 193 KELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDATAQAFLAEASVMTQLRHSN-LV 249

Query: 261 KYEG-CFKCGDSDCFVLEHVKH--------DRPEVLKKEIDLSQLQWYGYCLFRALASLH 311
           +  G   +       V E++           R    +  +    L  +   +  A+  L 
Sbjct: 250 QLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRG---RSVLGGDCLLKFSLDVCEAMEYLE 306

Query: 312 KQGIVHRDVKPGNFLFS----CKAVKGYLIDFNLA 342
               VHRD+   N L S     K     + DF L 
Sbjct: 307 GNNFVHRDLAARNVLVSEDNVAK-----VSDFGLT 336

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 33/150 (22%)

Query: 201 ESFIVEEEEGSGGYGTVYRAR-------RKNDGTVVAIKCPHANASKHYVS---NELRML 250
           +   + +  G G +G V  A        +  +   VA+K    +A++  +S   +E+ M+
Sbjct: 81  DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMM 140

Query: 251 ERFGGKNFIIKYEGCFKCGDSD--CFVLEHVKH-------------------DRPEVLKK 289
           +  G    II   G   C        ++E+                      D   V ++
Sbjct: 141 KMIGKHKNIINLLGA--CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEE 198

Query: 290 EIDLSQLQWYGYCLFRALASLHKQGIVHRD 319
           ++    L    Y L R +  L  Q  +HRD
Sbjct: 199 QMTFKDLVSCTYQLARGMEYLASQKCIHRD 228

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 22/155 (14%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIK-CPHANASKHYVSNELRMLERFGGKNFI 259
               ++ + G G YG VY    K     VA+K              E  +++     N +
Sbjct: 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN-L 278

Query: 260 IKYEGCFKCGDSD--CFVLEHVKH---------DRPEVLKKEIDLSQLQWYGYCLFRALA 308
           ++  G   C        + E + +            + +        L +    +  A+ 
Sbjct: 279 VQLLGV--CTREPPFYIITEFMTYGNLLDYLRECNRQEVS----AVVLLYMATQISSAME 332

Query: 309 SLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLA 342
            L K+  +HR++   N L      VK  + DF L+
Sbjct: 333 YLEKKNFIHRNLAARNCLVGENHLVK--VADFGLS 365

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 28/147 (19%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANASKHYVS---NELRMLER 252
           +   + +  G G +G V  A             VA+K     A+        +EL++L  
Sbjct: 27  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 86

Query: 253 FGGKNFIIKYEG-CFKCGDSDCFVLEHVKH-------------------DRPEVLKKEID 292
            G    ++   G C K G     ++E  K                       ++ K  + 
Sbjct: 87  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLT 146

Query: 293 LSQLQWYGYCLFRALASLHKQGIVHRD 319
           L  L  Y + + + +  L  +  +HRD
Sbjct: 147 LEHLICYSFQVAKGMEFLASRKCIHRD 173

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 33/150 (22%)

Query: 201 ESFIVEEEEGSGGYGTVYRAR-------RKNDGTVVAIKCPHANASKHYVS---NELRML 250
           +   + +  G G +G V  A        +  +   VA+K    +A++  +S   +E+ M+
Sbjct: 35  DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMM 94

Query: 251 ERFGGKNFIIKYEGCFKCGDSD--CFVLEHVKH-------------------DRPEVLKK 289
           +  G    II   G   C        ++E+                      D   V ++
Sbjct: 95  KMIGKHKNIINLLGA--CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEE 152

Query: 290 EIDLSQLQWYGYCLFRALASLHKQGIVHRD 319
           ++    L    Y L R +  L  Q  +HRD
Sbjct: 153 QMTFKDLVSCTYQLARGMEYLASQKCIHRD 182

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 37/179 (20%), Positives = 59/179 (32%), Gaps = 45/179 (25%)

Query: 199 NFESFIVEEEE---GSGGYGTVYRARRKNDGTVVAIKCPHANASKHYV------SNELRM 249
           NF+   +       G GG+G VY+     + T VA+K   A               E+++
Sbjct: 26  NFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKV 83

Query: 250 LERFGGKNFIIKYEGCFKCGDSD--CFV--------LEHVKHDRPEVLKKEIDLSQLQW- 298
           + +   +N +++  G     D D  C V        L                   L W 
Sbjct: 84  MAKCQHEN-LVELLGF--SSDGDDLCLVYVYMPNGSLLDRLSCLD-------GTPPLSWH 133

Query: 299 --YGYCL--FRALASLHKQGIVHRDVKPGNFL----FSCKAVKGYLIDFNLAMVGFDGS 349
                       +  LH+   +HRD+K  N L    F+ K     + DF LA      +
Sbjct: 134 MRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAK-----ISDFGLARASEKFA 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	728
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.95
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.89
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.83
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.81
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.63
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.29
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.23
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	99.04
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.83
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.71
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.49
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.33
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	98.28
3ats_A	357	Putative uncharacterized protein; hypothetical pro	98.14
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	98.07
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.96
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.88
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	97.52
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	97.38
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	97.31
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	97.09
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.04
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	97.0
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	96.94
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	96.93
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.71
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	96.51
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	96.31
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	95.74
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	95.69
3mes_A	424	Choline kinase; malaria, structural genomics, stru	94.57
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	91.63
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	87.85

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=6.6e-56  Score=485.02  Aligned_cols=317  Identities=30%  Similarity=0.520  Sum_probs=236.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEc---CCCeEEEEEeccCcCchhHHHHHHHHHHhcC-CCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRK---NDGTVVAIKCPHANASKHYVSNELRMLERFG-GKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~---~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +.|++.++||+|+||+||+|+++   .+++.||||++.......++.+|+.+|..+. |+| |++++++|.+.+++|+||
T Consensus        21 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~n-Iv~l~~~~~~~~~~~lvm   99 (361)
T 4f9c_A           21 NVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDN-VMGVKYCFRKNDHVVIAM   99 (361)
T ss_dssp             GTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTT-BCCCSEEEEETTEEEEEE
T ss_pred             CcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCC-CceEEEEEEECCEEEEEE
Confidence            47999999999999999999875   4578999999987777778899999999985 677 999999999999999999


Q ss_pred             eccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCC
Q 004835          277 EHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLP  356 (728)
Q Consensus       277 E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~  356 (728)
                      ||++++++..+.+.+++.+++.|+.||+.||+|||++|||||||||+||||+.+.+.+||+|||+|+.........    
T Consensus       100 E~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~----  175 (361)
T 4f9c_A          100 PYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIEL----  175 (361)
T ss_dssp             ECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGG----
T ss_pred             eCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccccc----
Confidence            9999999988888999999999999999999999999999999999999999666789999999998643221110    


Q ss_pred             CCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCcc
Q 004835          357 GTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPA  436 (728)
Q Consensus       357 ~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (728)
                                                                      .+|+......                 .++..
T Consensus       176 ------------------------------------------------~~~~~~~~~~-----------------~~~~~  190 (361)
T 4f9c_A          176 ------------------------------------------------LKFVQSEAQQ-----------------ERCSQ  190 (361)
T ss_dssp             ------------------------------------------------GGGC----------------------------
T ss_pred             ------------------------------------------------cccccccccc-----------------ccccc
Confidence                                                            0111100000                 00000


Q ss_pred             cccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCc
Q 004835          437 ERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDL  516 (728)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  516 (728)
                                                                                  .                   
T Consensus       191 ------------------------------------------------------------~-------------------  191 (361)
T 4f9c_A          191 ------------------------------------------------------------N-------------------  191 (361)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------------------------------------------c-------------------
Confidence                                                                        0                   


Q ss_pred             hhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCC
Q 004835          517 SDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP  596 (728)
Q Consensus       517 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~  596 (728)
                                          ............+..+||++|||||++.+...|+.++||||+|||+|||++|++||++.+
T Consensus       192 --------------------~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~  251 (361)
T 4f9c_A          192 --------------------KCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKAS  251 (361)
T ss_dssp             ----------------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCS
T ss_pred             --------------------cccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCC
Confidence                                000001112234467899999999999888878999999999999999999999997644


Q ss_pred             h--HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhh-----------------ccCCcccccC
Q 004835          597 E--QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLI-----------------TKRPDFLEVI  657 (728)
Q Consensus       597 ~--~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~  657 (728)
                      .  +++..|+..+|+++.+.........      .......|......+++..                 ....+.+..+
T Consensus       252 ~~~~~l~~I~~~~G~~~~~~~~~~~~~~------~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i  325 (361)
T 4f9c_A          252 DDLTALAQIMTIRGSRETIQAAKTFGKS------ILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEV  325 (361)
T ss_dssp             SHHHHHHHHHHHHCHHHHHHHHHHTTEE------EEESSCCCCCCHHHHHHHHC----------------------CTTC
T ss_pred             CHHHHHHHHHHhcCCccchhhhhhcccc------ccccccCcchhhhHHHHhhccccccccccccccccccccccccccC
Confidence            3  6899999999988777765543322      1111222322222222211                 1112334678


Q ss_pred             chhHHHHHHHhcccCCCCCCCHHHHhcCCCCccch
Q 004835          658 PSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       658 ~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      +++++|||.+||++||++|+||+|||+||||++++
T Consensus       326 s~~a~DLl~~lL~~dP~~R~ta~eaL~Hp~f~~i~  360 (361)
T 4f9c_A          326 PDEAYDLLDKLLDLNPASRITAEEALLHPFFKDMS  360 (361)
T ss_dssp             CHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGTTC-
T ss_pred             CHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCCC
Confidence            99999999999999999999999999999999875

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=8.4e-56  Score=480.64  Aligned_cols=256  Identities=24%  Similarity=0.392  Sum_probs=216.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      +.|++.++||+|+||+||+|+++.+|+.||||++...  ...+.+.+|+.+|+.++||| |++++++|.+++.+||||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn-IV~l~~~~~~~~~~~ivmEy  152 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHEN-VVEMYNSYLVGDELWVVMEF  152 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTT-BCCEEEEEEETTEEEEEECC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCEEEEEEeC
Confidence            4699999999999999999999999999999998643  34566889999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCC
Q 004835          279 VKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLP  356 (728)
Q Consensus       279 ~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~  356 (728)
                      |++|+|..+..  .+++..++.|+.||+.||+|||++|||||||||+||||+ .++.+||+|||+|+.....        
T Consensus       153 ~~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~-~~g~vKl~DFGla~~~~~~--------  223 (346)
T 4fih_A          153 LEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLT-HDGRVKLSDFGFCAQVSKE--------  223 (346)
T ss_dssp             CTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTCCEEECCCTTCEECCSS--------
T ss_pred             CCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEC-CCCCEEEecCcCceecCCC--------
Confidence            99999887764  499999999999999999999999999999999999999 6678999999999752110        


Q ss_pred             CCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCcc
Q 004835          357 GTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPA  436 (728)
Q Consensus       357 ~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (728)
                                                                                                      
T Consensus       224 --------------------------------------------------------------------------------  223 (346)
T 4fih_A          224 --------------------------------------------------------------------------------  223 (346)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCc
Q 004835          437 ERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDL  516 (728)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  516 (728)
                                                                                                      
T Consensus       224 --------------------------------------------------------------------------------  223 (346)
T 4fih_A          224 --------------------------------------------------------------------------------  223 (346)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCC
Q 004835          517 SDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP  596 (728)
Q Consensus       517 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~  596 (728)
                                                  ....+..+||+.|||||++.+. .|+.++||||||||+|||++|++||.+.+
T Consensus       224 ----------------------------~~~~~~~~GTp~YmAPEvl~~~-~y~~~~DiWSlGvilyeml~G~~PF~~~~  274 (346)
T 4fih_A          224 ----------------------------VPRRKSLVGTPYWMAPELISRL-PYGPEVDIWSLGIMVIEMVDGEPPYFNEP  274 (346)
T ss_dssp             ----------------------------SCCBCCCCSCGGGCCHHHHTTC-CBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             ----------------------------CCcccccccCcCcCCHHHHCCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCcC
Confidence                                        0011256799999999998554 47999999999999999999999999887


Q ss_pred             hHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCC
Q 004835          597 EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLR  676 (728)
Q Consensus       597 ~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R  676 (728)
                      ...+...+.....                                       .....+..+++++.|||.+||..||++|
T Consensus       275 ~~~~~~~i~~~~~---------------------------------------~~~~~~~~~s~~~~dli~~~L~~dP~~R  315 (346)
T 4fih_A          275 PLKAMKMIRDNLP---------------------------------------PRLKNLHKVSPSLKGFLDRLLVRDPAQR  315 (346)
T ss_dssp             HHHHHHHHHHSSC---------------------------------------CCCSCGGGSCHHHHHHHHHHSCSSTTTS
T ss_pred             HHHHHHHHHcCCC---------------------------------------CCCCccccCCHHHHHHHHHHcCCChhHC
Confidence            7554443321000                                       0112235688999999999999999999


Q ss_pred             CCHHHHhcCCCCccchhc
Q 004835          677 ISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       677 pta~e~L~Hp~f~~~~~~  694 (728)
                      |||+|+|+||||+.....
T Consensus       316 ~ta~e~l~Hp~~~~~~~p  333 (346)
T 4fih_A          316 ATAAELLKHPFLAKAGPP  333 (346)
T ss_dssp             CCHHHHTTCGGGGGCCCG
T ss_pred             cCHHHHhcCHhhcCCCCC
Confidence            999999999999976543

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=3.3e-56  Score=477.19  Aligned_cols=259  Identities=27%  Similarity=0.333  Sum_probs=220.1

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..++|++++.||+|+||+||+|+++.+|+.||||++.+.     .....+.+|+.+|++++||| |++++++|.+.+.+|
T Consensus        30 ~~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~~~~y  108 (311)
T 4aw0_A           30 RPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF-FVKLYFTFQDDEKLY  108 (311)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEE
T ss_pred             CccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEEeCCEEE
Confidence            346899999999999999999999999999999998642     34567899999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      ||||||.+|+|..+++   .+++..++.|+.||+.||.|||++|||||||||+||||+ .++.+||+|||+|+...... 
T Consensus       109 ivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~-~~g~vKl~DFGla~~~~~~~-  186 (311)
T 4aw0_A          109 FGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLN-EDMHIQITDFGTAKVLSPES-  186 (311)
T ss_dssp             EEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTSCEEECCCTTCEECCTTT-
T ss_pred             EEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEc-CCCCEEEEEcCCceecCCCC-
Confidence            9999999998877653   499999999999999999999999999999999999999 66789999999998521100 


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (311)
T 4aw0_A          187 --------------------------------------------------------------------------------  186 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (311)
T 4aw0_A          187 --------------------------------------------------------------------------------  186 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                       ........+||+.|||||++.+.. |+.++|||||||++|+|++|++
T Consensus       187 ---------------------------------~~~~~~~~~GTp~YmAPEvl~~~~-y~~~~DiWSlGvilyeml~G~~  232 (311)
T 4aw0_A          187 ---------------------------------KQARANSFVGTAQYVSPELLTEKS-ACKSSDLWALGCIIYQLVAGLP  232 (311)
T ss_dssp             ---------------------------------TCCCBCCCCSCGGGCCHHHHHHSC-BCHHHHHHHHHHHHHHHHHSSC
T ss_pred             ---------------------------------CcccccCcccCcccCCHHHHcCCC-CCcHHHHHHHHHHHHHHHhCCC
Confidence                                             001123568999999999996654 6999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.+...+...+.                                          ...+.+++.+++++.|||.+||.
T Consensus       233 PF~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~dli~~lL~  270 (311)
T 4aw0_A          233 PFRAGNEGLIFAKII------------------------------------------KLEYDFPEKFFPKARDLVEKLLV  270 (311)
T ss_dssp             SSCCSSHHHHHHHHH------------------------------------------HTCCCCCTTCCHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHH------------------------------------------cCCCCCCcccCHHHHHHHHHHcc
Confidence            999887755433221                                          12234556788999999999999


Q ss_pred             cCCCCCCCHHH------HhcCCCCccchhcch
Q 004835          671 VNPRLRISAED------ALKHEFFAPCHEMLR  696 (728)
Q Consensus       671 ~dP~~Rpta~e------~L~Hp~f~~~~~~~~  696 (728)
                      .||++|||++|      +++||||+++.+..-
T Consensus       271 ~dp~~R~t~~e~~~~~~i~~Hp~F~~idw~~l  302 (311)
T 4aw0_A          271 LDATKRLGCEEMEGYGPLKAHPFFESVTWENL  302 (311)
T ss_dssp             SSGGGSTTSGGGTCHHHHHTSGGGTTCCCTTG
T ss_pred             CCHhHCcChHHHcCCHHHHCCCCcCCCCHHHh
Confidence            99999999988      589999999987543

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=5.8e-56  Score=468.06  Aligned_cols=249  Identities=24%  Similarity=0.387  Sum_probs=202.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +++|++.+.||+|+||+||+|+++.+|+.||||++.+.     .....+.+|+.+|++++||| |++++++|.+.+.+|+
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~Hpn-Iv~~~~~~~~~~~~~i   90 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPH-IIKLYDVIKSKDEIIM   90 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEEEE
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCC-CCeEEEEEEECCEEEE
Confidence            57999999999999999999999999999999998643     23456889999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          275 VLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       275 V~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      ||||++|++++.+.+  .+++..++.++.||+.||+|||++|||||||||+||||+ .++.+||+|||+|+.....    
T Consensus        91 vmEy~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~-~~~~vkl~DFGla~~~~~~----  165 (275)
T 3hyh_A           91 VIEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLD-EHLNVKIADFGLSNIMTDG----  165 (275)
T ss_dssp             EEECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEEC-TTCCEEECCSSCC----------
T ss_pred             EEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEEC-CCCCEEEeecCCCeecCCC----
Confidence            999997766665544  499999999999999999999999999999999999999 6678999999999742100    


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (275)
T 3hyh_A          166 --------------------------------------------------------------------------------  165 (275)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (275)
T 3hyh_A          166 --------------------------------------------------------------------------------  165 (275)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                       ......+||+.|||||++.+..+++.++|||||||++|+|++|++||
T Consensus       166 ---------------------------------~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF  212 (275)
T 3hyh_A          166 ---------------------------------NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPF  212 (275)
T ss_dssp             ------------------------------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             ---------------------------------CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCC
Confidence                                             00113579999999999987776789999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       593 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      .+.+...+...+.                                          ...+.++..+++++.+||.+||..|
T Consensus       213 ~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~~li~~~L~~d  250 (275)
T 3hyh_A          213 DDESIPVLFKNIS------------------------------------------NGVYTLPKFLSPGAAGLIKRMLIVN  250 (275)
T ss_dssp             CCSSHHHHHHHHH------------------------------------------HTCCCCCTTSCHHHHHHHHHHSCSS
T ss_pred             CCCCHHHHHHHHH------------------------------------------cCCCCCCCCCCHHHHHHHHHHccCC
Confidence            9877665544331                                          1122344567899999999999999


Q ss_pred             CCCCCCHHHHhcCCCCc
Q 004835          673 PRLRISAEDALKHEFFA  689 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~  689 (728)
                      |++|||++|+|+||||+
T Consensus       251 P~~R~s~~eil~hpw~k  267 (275)
T 3hyh_A          251 PLNRISIHEIMQDDWFK  267 (275)
T ss_dssp             GGGSCCHHHHHHCHHHH
T ss_pred             hhHCcCHHHHHcCcccc
Confidence            99999999999999997

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.4e-54  Score=482.38  Aligned_cols=256  Identities=24%  Similarity=0.392  Sum_probs=216.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      +.|++.++||+|+||.||+|+++.+|+.||||++...  ...+.+.+|+.+|+.++|+| |++++++|.+++.+||||||
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn-IV~l~~~~~~~~~~~iVmEy  229 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHEN-VVEMYNSYLVGDELWVVMEF  229 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTT-BCCEEEEEEETTEEEEEEEC
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC-CCceEEEEEECCEEEEEEeC
Confidence            4799999999999999999999999999999998643  34567889999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCC
Q 004835          279 VKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLP  356 (728)
Q Consensus       279 ~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~  356 (728)
                      |.+|+|..+.+  .+++..++.|+.||+.||+|||++|||||||||+||||+ .++.+||+|||+|+.....        
T Consensus       230 ~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~-~~g~vKl~DFGla~~~~~~--------  300 (423)
T 4fie_A          230 LEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLT-HDGRVKLSDFGFCAQVSKE--------  300 (423)
T ss_dssp             CTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEEC-TTCCEEECCCTTCEECCSS--------
T ss_pred             CCCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEc-CCCCEEEecCccceECCCC--------
Confidence            99999887764  499999999999999999999999999999999999999 6678999999999752110        


Q ss_pred             CCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCcc
Q 004835          357 GTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPA  436 (728)
Q Consensus       357 ~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (728)
                                                                                                      
T Consensus       301 --------------------------------------------------------------------------------  300 (423)
T 4fie_A          301 --------------------------------------------------------------------------------  300 (423)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCc
Q 004835          437 ERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDL  516 (728)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  516 (728)
                                                                                                      
T Consensus       301 --------------------------------------------------------------------------------  300 (423)
T 4fie_A          301 --------------------------------------------------------------------------------  300 (423)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCC
Q 004835          517 SDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP  596 (728)
Q Consensus       517 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~  596 (728)
                                                  .......+||+.|||||++.+. .|+.++||||||||+|||++|++||.+.+
T Consensus       301 ----------------------------~~~~~~~~GTp~YmAPEvl~~~-~y~~~~DiWSlGvilyeml~G~~PF~~~~  351 (423)
T 4fie_A          301 ----------------------------VPRRKSLVGTPYWMAPELISRL-PYGPEVDIWSLGIMVIEMVDGEPPYFNEP  351 (423)
T ss_dssp             ----------------------------CCCBCCCEECTTTCCHHHHTTC-CBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             ----------------------------CccccccccCcCcCCHHHHCCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCcC
Confidence                                        0012256799999999999555 47999999999999999999999999887


Q ss_pred             hHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCC
Q 004835          597 EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLR  676 (728)
Q Consensus       597 ~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~R  676 (728)
                      ...+...+.....                                       .....+..+++++.|||.+||..||++|
T Consensus       352 ~~~~~~~i~~~~~---------------------------------------~~~~~~~~~s~~~~dli~~~L~~dP~~R  392 (423)
T 4fie_A          352 PLKAMKMIRDNLP---------------------------------------PRLKNLHKVSPSLKGFLDRLLVRDPAQR  392 (423)
T ss_dssp             HHHHHHHHHHSCC---------------------------------------CCCSCTTSSCHHHHHHHHHHSCSSTTTS
T ss_pred             HHHHHHHHHcCCC---------------------------------------CCCcccccCCHHHHHHHHHHcCCChhHC
Confidence            7554443321100                                       0112234678999999999999999999


Q ss_pred             CCHHHHhcCCCCccchhc
Q 004835          677 ISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       677 pta~e~L~Hp~f~~~~~~  694 (728)
                      |||+|+|+||||+.....
T Consensus       393 ~ta~ell~Hp~~~~~~~p  410 (423)
T 4fie_A          393 ATAAELLKHPFLAKAGPP  410 (423)
T ss_dssp             CCHHHHTTCGGGGGCCCG
T ss_pred             cCHHHHhcCHHhcCCCCC
Confidence            999999999999976543

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=5.4e-55  Score=466.89  Aligned_cols=258  Identities=22%  Similarity=0.324  Sum_probs=210.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEc---CCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRK---NDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~---~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .++|++++.||+|+||+||+|++.   .+++.||||+++..    ....++.+|+.+|.+++||| |++++++|.+++.+
T Consensus        23 p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~~~~  101 (304)
T 3ubd_A           23 PSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPF-IVKLHYAFQTEGKL  101 (304)
T ss_dssp             GGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTT-EECEEEEEEETTEE
T ss_pred             ccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCC-CCeEEEEEEECCEE
Confidence            468999999999999999999984   46789999998753    22346788999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |||||||.+++|..++.   .+++..++.|+.||+.||+|||++|||||||||+|||++ .++.+||+|||+|+..... 
T Consensus       102 ~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~-~~g~vKl~DFGla~~~~~~-  179 (304)
T 3ubd_A          102 YLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLD-EEGHIKLTDFGLSKESIDH-  179 (304)
T ss_dssp             EEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEEC-TTSCEEEESSEEEEC-----
T ss_pred             EEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEc-CCCCEEecccccceeccCC-
Confidence            99999999998876653   389999999999999999999999999999999999999 6678999999999741100 


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       180 --------------------------------------------------------------------------------  179 (304)
T 3ubd_A          180 --------------------------------------------------------------------------------  179 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       180 --------------------------------------------------------------------------------  179 (304)
T 3ubd_A          180 --------------------------------------------------------------------------------  179 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                         .......+||+.|||||++.+. .|+.++|||||||++|||++|+
T Consensus       180 -----------------------------------~~~~~~~~GT~~YmAPE~~~~~-~y~~~~DiwSlGvilyemltG~  223 (304)
T 3ubd_A          180 -----------------------------------EKKAYSFCGTVEYMAPEVVNRR-GHTQSADWWSFGVLMFEMLTGT  223 (304)
T ss_dssp             ------------------------------------CCCCSCCCCGGGCCHHHHHTS-CCCTHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------------------------CccccccccCcccCCHHHhccC-CCCCCCcccchHHHHHHHHhCC
Confidence                                               0011245799999999999555 4799999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          590 TPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       590 ~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      +||.+.+...+...+.                                          ...+.++..+++++.+||.+||
T Consensus       224 ~PF~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~~li~~~L  261 (304)
T 3ubd_A          224 LPFQGKDRKETMTMIL------------------------------------------KAKLGMPQFLSPEAQSLLRMLF  261 (304)
T ss_dssp             CSSCCSSHHHHHHHHH------------------------------------------HCCCCCCTTSCHHHHHHHHHHT
T ss_pred             CCCCCcCHHHHHHHHH------------------------------------------cCCCCCCCcCCHHHHHHHHHHc
Confidence            9999887755433221                                          1123345568899999999999


Q ss_pred             ccCCCCCCC-----HHHHhcCCCCccchhcchHh
Q 004835          670 TVNPRLRIS-----AEDALKHEFFAPCHEMLRKQ  698 (728)
Q Consensus       670 ~~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~  698 (728)
                      +.||++|||     ++|+++||||+++.+..-.+
T Consensus       262 ~~dP~~R~ta~~~~~~eil~Hp~f~~idw~~l~~  295 (304)
T 3ubd_A          262 KRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYR  295 (304)
T ss_dssp             CSSGGGSTTCSTTTHHHHHTSGGGTTCCHHHHHT
T ss_pred             ccCHHHCCCCCcCCHHHHHcCccccCCCHHHHHh
Confidence            999999998     58999999999998654433

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=4.9e-55  Score=475.29  Aligned_cols=253  Identities=24%  Similarity=0.299  Sum_probs=207.3

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..+++|++++.||+|+||+||+|+++.+|+.||||++....    ..+.+.+|+.+|++|+||| |++++++|.+++.+|
T Consensus        21 ~sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~Hpn-IV~~~~~~~~~~~~y   99 (350)
T 4b9d_A           21 QSMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPN-IVQYRESFEENGSLY   99 (350)
T ss_dssp             SCCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEEETTEEE
T ss_pred             CcccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCC-CCcEEEEEEECCEEE
Confidence            45689999999999999999999999999999999987542    2456889999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          274 FVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      ||||||++++|..++.     .+++..++.|+.||+.||.|||++|||||||||+||||+ .++.+||+|||+|+.....
T Consensus       100 iVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~-~~g~vKl~DFGla~~~~~~  178 (350)
T 4b9d_A          100 IVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLT-KDGTVQLGDFGIARVLNST  178 (350)
T ss_dssp             EEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEEC-TTCCEEECSTTEESCCCHH
T ss_pred             EEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEEC-CCCCEEEcccccceeecCC
Confidence            9999999998877653     268889999999999999999999999999999999999 6678999999999752100


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                      .                                                                               
T Consensus       179 ~-------------------------------------------------------------------------------  179 (350)
T 4b9d_A          179 V-------------------------------------------------------------------------------  179 (350)
T ss_dssp             H-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       180 --------------------------------------------------------------------------------  179 (350)
T 4b9d_A          180 --------------------------------------------------------------------------------  179 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                           ...+..+||+.|||||++.+. .|+.++||||||||+|||++|
T Consensus       180 -------------------------------------~~~~~~~GT~~YmAPE~l~~~-~y~~~~DiwSlGvilyemltG  221 (350)
T 4b9d_A          180 -------------------------------------ELARACIGTPYYLSPEICENK-PYNNKSDIWALGCVLYELCTL  221 (350)
T ss_dssp             -------------------------------------HHHHHHHSCCTTCCHHHHTTC-CCCHHHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------ccccccCCCccccCHHHHCCC-CCCcHHHHHHHHHHHHHHHHC
Confidence                                                 000134699999999999655 479999999999999999999


Q ss_pred             CCCCCCCChHHHHH-HHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHH
Q 004835          589 RTPFFGDPEQNIKD-IAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK  667 (728)
Q Consensus       589 ~~PF~~~~~~~l~~-i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~  667 (728)
                      ++||.+.+...+.. ++.  +                                        ..+.++..+++++.+||.+
T Consensus       222 ~~PF~~~~~~~~~~~i~~--~----------------------------------------~~~~~~~~~s~~~~~li~~  259 (350)
T 4b9d_A          222 KHAFEAGSMKNLVLKIIS--G----------------------------------------SFPPVSLHYSYDLRSLVSQ  259 (350)
T ss_dssp             SCSCCCSSHHHHHHHHHH--T----------------------------------------CCCCCCTTSCHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHHHHc--C----------------------------------------CCCCCCccCCHHHHHHHHH
Confidence            99999887754433 221  0                                        0112234678999999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCccc
Q 004835          668 CLTVNPRLRISAEDALKHEFFAPC  691 (728)
Q Consensus       668 ~L~~dP~~Rpta~e~L~Hp~f~~~  691 (728)
                      ||..||++|||++|+|+||||+.-
T Consensus       260 ~L~~dP~~R~s~~e~l~hp~~~~~  283 (350)
T 4b9d_A          260 LFKRNPRDRPSVNSILEKGFIAKR  283 (350)
T ss_dssp             HTCSSGGGSCCHHHHHTSHHHHTT
T ss_pred             HccCChhHCcCHHHHhcCHHhhcC
Confidence            999999999999999999999853

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.9e-54  Score=475.97  Aligned_cols=289  Identities=26%  Similarity=0.386  Sum_probs=226.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEe------CC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKC------GD  270 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~------~~  270 (728)
                      ++|++++.||+|+||+||+|+++.+|+.||||++....    ....+.+|+.+|+.++|+| |+++++++..      .+
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~Hpn-Iv~l~~~~~~~~~~~~~~  132 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDN-IIAIKDILRPTVPYGEFK  132 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTT-BCCEEEECCCSSCTTTCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCC-cceEeeeeecccccccCC
Confidence            57999999999999999999999999999999987542    2346789999999999999 9999998764      36


Q ss_pred             eeEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          271 SDCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      .+|||||||++++...+.+  .+++..++.|++||+.||.|||++|||||||||+|||++ .++.+||+|||+|+.....
T Consensus       133 ~~~ivmE~~~g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~-~~~~~Ki~DFGla~~~~~~  211 (398)
T 4b99_A          133 SVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVN-ENCELKIGDFGMARGLCTS  211 (398)
T ss_dssp             CEEEEEECCSEEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEEC-TTCCEEECCCTTCBCC---
T ss_pred             EEEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccC-CCCCEEEeecceeeecccC
Confidence            7899999998775555543  399999999999999999999999999999999999999 6678999999999752110


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                      ..                                                                              
T Consensus       212 ~~------------------------------------------------------------------------------  213 (398)
T 4b99_A          212 PA------------------------------------------------------------------------------  213 (398)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       214 --------------------------------------------------------------------------------  213 (398)
T 4b99_A          214 --------------------------------------------------------------------------------  213 (398)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                        ......+..+||+.|||||++.+..+|+.++||||+|||+|||++|
T Consensus       214 ----------------------------------~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G  259 (398)
T 4b99_A          214 ----------------------------------EHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLAR  259 (398)
T ss_dssp             ------------------------------------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHT
T ss_pred             ----------------------------------ccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHC
Confidence                                              0001123568999999999998888789999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHH
Q 004835          589 RTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK  667 (728)
Q Consensus       589 ~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~  667 (728)
                      ++||.+.+. +++..|+...|.+............     .......++......|..+       ...++++++|||.+
T Consensus       260 ~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~dLl~~  327 (398)
T 4b99_A          260 RQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAER-----VRAYIQSLPPRQPVPWETV-------YPGADRQALSLLGR  327 (398)
T ss_dssp             SCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----C-----HHHHHHSSCCCCCCCHHHH-------STTCCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhh-----hhhhhhcCCCcCCCCHHHh-------CCCCCHHHHHHHHH
Confidence            999999876 6788888888875432211110000     0000111222222233322       24578999999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          668 CLTVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       668 ~L~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      ||++||++||||+|+|+||||+..++..
T Consensus       328 mL~~dP~~R~ta~e~L~Hp~f~~~~~p~  355 (398)
T 4b99_A          328 MLRFEPSARISAAAALRHPFLAKYHDPD  355 (398)
T ss_dssp             HSCSSTTTSCCHHHHTTSGGGTTTCCGG
T ss_pred             HCcCChhHCcCHHHHhcCHhhCcCCCCc
Confidence            9999999999999999999999887543

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.3e-53  Score=453.48  Aligned_cols=141  Identities=21%  Similarity=0.293  Sum_probs=125.7

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEe----CCeeEE
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKC----GDSDCF  274 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~----~~~~~L  274 (728)
                      |++.++||+|+||+||+|++..++..||||++....    ..+.+.+|+.+|++++||| |++++++|.+    ...+||
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~Hpn-IV~~~~~~~~~~~~~~~~~l  106 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPN-IVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEEEEEETTEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEeeccCCCcEEEE
Confidence            478889999999999999999999999999986432    2456889999999999999 9999999875    356899


Q ss_pred             EEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCC--cEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQG--IVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~g--IIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||||++|+|..+++   .+++..++.|+.||+.||+|||++|  ||||||||+||||+..++.+||+|||+|+.
T Consensus       107 vmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~  181 (290)
T 3fpq_A          107 VTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             EEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEe
Confidence            999999999887764   3899999999999999999999998  999999999999985567899999999974

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=1.8e-53  Score=460.87  Aligned_cols=142  Identities=23%  Similarity=0.299  Sum_probs=130.0

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .++.|++.++||+|+||+||+|+++.+|+.||||+++.....   .+|+.++..++||| |++++++|.+++.+||||||
T Consensus        56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~---~~E~~il~~l~Hpn-IV~l~~~~~~~~~~~ivmEy  131 (336)
T 4g3f_A           56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR---VEELVACAGLSSPR-IVPLYGAVREGPWVNIFMEL  131 (336)
T ss_dssp             TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC---THHHHTTTTCCCTT-BCCEEEEEEETTEEEEEECC
T ss_pred             chhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhH---HHHHHHHHhCCCCC-CCcEEEEEEECCEEEEEEec
Confidence            467899999999999999999999999999999999765332   47999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++++|..+++   .+++..++.|+.||+.||+|||++|||||||||+||||+.++..+||+|||+|+.
T Consensus       132 ~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~  200 (336)
T 4g3f_A          132 LEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALC  200 (336)
T ss_dssp             CTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEE
T ss_pred             cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeE
Confidence            99999887764   3999999999999999999999999999999999999995555799999999986

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.9e-51  Score=438.70  Aligned_cols=143  Identities=22%  Similarity=0.300  Sum_probs=121.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCC-------
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD-------  270 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~-------  270 (728)
                      ++|++++.||+|+||+||+|+++.+|+.||||++....   ..+.+.+|+.+|++++||| |++++++|...+       
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~Hpn-IV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG-IVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTT-BCCEEEEEEEEC-------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEEecCccccccc
Confidence            46999999999999999999999999999999986433   2356889999999999999 999999987544       


Q ss_pred             -----eeEEEEeccCCCChHHHhhc------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEee
Q 004835          271 -----SDCFVLEHVKHDRPEVLKKE------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDF  339 (728)
Q Consensus       271 -----~~~LV~E~~~~~~l~~l~~~------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DF  339 (728)
                           ++|+|||||.++++..+...      ..+..++.|+.||+.||+|||++|||||||||+||||+ .++.+||+||
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~-~~~~vKl~DF  162 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFT-MDDVVKVGDF  162 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTCCEEECCC
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEEC-CCCcEEEccC
Confidence                 47999999999998877642      44566889999999999999999999999999999999 6668999999


Q ss_pred             eccccc
Q 004835          340 NLAMVG  345 (728)
Q Consensus       340 GlA~~~  345 (728)
                      |+|+..
T Consensus       163 Gla~~~  168 (299)
T 4g31_A          163 GLVTAM  168 (299)
T ss_dssp             CCC---
T ss_pred             ccceec
Confidence            999863

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=2.9e-51  Score=476.12  Aligned_cols=271  Identities=22%  Similarity=0.328  Sum_probs=222.3

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHH---HHHHHhcCCCCceEEecceEEeC
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNE---LRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~E---i~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      ..+++|+++++||+|+||+||+|+++.+|+.||||++.+.     .....+.+|   +.++..++||| |++++++|.+.
T Consensus       186 ~slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~-IV~l~~~f~~~  264 (689)
T 3v5w_A          186 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPF-IVCMSYAFHTP  264 (689)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTT-BCCEEEEEECS
T ss_pred             CchHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCC-EeEEEEEEEEC
Confidence            4578999999999999999999999999999999998642     223334444   55666778998 99999999999


Q ss_pred             CeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccccc
Q 004835          270 DSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGF  346 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~  346 (728)
                      +.+|||||||.||.|..++.   .+++..++.|+.||+.||.|||++|||||||||+||||+ .++.+||+|||+|+...
T Consensus       265 ~~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld-~~G~vKL~DFGlA~~~~  343 (689)
T 3v5w_A          265 DKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLD-EHGHVRISDLGLACDFS  343 (689)
T ss_dssp             SEEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEEC-TTSCEEECCCTTCEECS
T ss_pred             CEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEe-CCCCEEecccceeeecC
Confidence            99999999999999877664   399999999999999999999999999999999999999 66789999999997421


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ..                                                                              
T Consensus       344 ~~------------------------------------------------------------------------------  345 (689)
T 3v5w_A          344 KK------------------------------------------------------------------------------  345 (689)
T ss_dssp             SC------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       346 --------------------------------------------------------------------------------  345 (689)
T 3v5w_A          346 --------------------------------------------------------------------------------  345 (689)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                              .....+||+.|||||++.+...|+.++||||||||+|||+
T Consensus       346 ----------------------------------------~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmL  385 (689)
T 3v5w_A          346 ----------------------------------------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL  385 (689)
T ss_dssp             ----------------------------------------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence                                                    0114579999999999976666899999999999999999


Q ss_pred             cCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          587 IGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       587 tG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      +|++||.+.+......+..                                       .+......++..+++++.|||.
T Consensus       386 tG~~PF~~~~~~~~~~i~~---------------------------------------~i~~~~~~~p~~~S~~a~dLI~  426 (689)
T 3v5w_A          386 RGHSPFRQHKTKDKHEIDR---------------------------------------MTLTMAVELPDSFSPELRSLLE  426 (689)
T ss_dssp             HSSCTTCGGGCCCHHHHHH---------------------------------------HHHHCCCCCCTTSCHHHHHHHH
T ss_pred             hCCCCCCCCChHHHHHHHH---------------------------------------hhcCCCCCCCccCCHHHHHHHH
Confidence            9999998643322222221                                       1112234556678999999999


Q ss_pred             HhcccCCCCCCC-----HHHHhcCCCCccchhcchHhHhhhccccc
Q 004835          667 KCLTVNPRLRIS-----AEDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       667 ~~L~~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      +||+.||.+|++     |+||++||||+++.+....++.+.+...+
T Consensus       427 ~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~idW~~l~~~~~~pP~~P  472 (689)
T 3v5w_A          427 GLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKYPPPLIP  472 (689)
T ss_dssp             HHTCSCGGGCTTCSSSTHHHHTTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred             HHccCCHhHCCCCCCCCHHHHhcCccccCCCHHHHHcCCCCcCccC
Confidence            999999999998     89999999999999987777666655544

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=2.2e-50  Score=430.48  Aligned_cols=143  Identities=24%  Similarity=0.351  Sum_probs=126.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .++|.+.+.||+|+||+||+|++.     .++..||||+++...  ..+.|.+|+.+|++++||| |+++++++.+++.+
T Consensus        12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~Hpn-IV~l~g~~~~~~~~   90 (299)
T 4asz_A           12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEH-IVKFYGVCVEGDPL   90 (299)
T ss_dssp             GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTT-BCCEEEEECSSSSE
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCC-CccEEEEEeeCCEE
Confidence            468999999999999999999975     357899999997543  3456899999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh----------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEE
Q 004835          273 CFVLEHVKHDRPEVLKK----------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYL  336 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL  336 (728)
                      |||||||++|+|..+++                .+++.++..|+.||+.||+|||+++||||||||+||||+ .++.+||
T Consensus        91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~-~~~~~Ki  169 (299)
T 4asz_A           91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVG-ENLLVKI  169 (299)
T ss_dssp             EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC-GGGCEEE
T ss_pred             EEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEEC-CCCcEEE
Confidence            99999999999887653                388999999999999999999999999999999999999 6678999


Q ss_pred             Eeeecccc
Q 004835          337 IDFNLAMV  344 (728)
Q Consensus       337 ~DFGlA~~  344 (728)
                      +|||+|+.
T Consensus       170 ~DFGla~~  177 (299)
T 4asz_A          170 GDFGMSRD  177 (299)
T ss_dssp             CCCSCHHH
T ss_pred             CCccccee
Confidence            99999975

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=2.5e-49  Score=427.77  Aligned_cols=144  Identities=21%  Similarity=0.315  Sum_probs=125.5

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ..++|.+.++||+|+||+||+|++.     .+++.||||+++...  ..+.|.+|+.+|.+++||| |+++++++.+++.
T Consensus        39 ~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~Hpn-IV~l~g~~~~~~~  117 (329)
T 4aoj_A           39 KRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQH-IVRFFGVCTEGRP  117 (329)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTT-BCCEEEEECSSSS
T ss_pred             CHHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCE
Confidence            3468999999999999999999975     358899999997543  3456899999999999999 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCc
Q 004835          272 DCFVLEHVKHDRPEVLKK------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK  333 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~  333 (728)
                      +|||||||++|+|..+++                  .+++.++..|+.||+.||+|||+++||||||||+||||+ +++.
T Consensus       118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~-~~~~  196 (329)
T 4aoj_A          118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVG-QGLV  196 (329)
T ss_dssp             EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEE-TTTE
T ss_pred             EEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEEC-CCCc
Confidence            999999999999987653                  278999999999999999999999999999999999999 7788


Q ss_pred             eEEEeeecccc
Q 004835          334 GYLIDFNLAMV  344 (728)
Q Consensus       334 ~kL~DFGlA~~  344 (728)
                      +||+|||+|+.
T Consensus       197 ~Ki~DFGla~~  207 (329)
T 4aoj_A          197 VKIGDFGMSRD  207 (329)
T ss_dssp             EEECCCC----
T ss_pred             EEEccccccee
Confidence            99999999975

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=3.9e-49  Score=422.53  Aligned_cols=249  Identities=18%  Similarity=0.262  Sum_probs=206.2

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      .++.+++.++||+|+||+||+|++.     .+++.||||+++...   ..+.|.+|+.++.+++||| |+++++++..++
T Consensus        24 ~~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpN-IV~l~g~~~~~~  102 (308)
T 4gt4_A           24 SLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPN-VVCLLGVVTKDQ  102 (308)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTT-BCCEEEEECSSS
T ss_pred             CHHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCC-CCCcceEEEECC
Confidence            4568999999999999999999974     357899999987532   3467899999999999999 999999999999


Q ss_pred             eeEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC
Q 004835          271 SDCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA  331 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~  331 (728)
                      .+|||||||++|+|..++.                   .+++..+..|+.||+.||+|||+++||||||||+||||+ ++
T Consensus       103 ~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~-~~  181 (308)
T 4gt4_A          103 PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVY-DK  181 (308)
T ss_dssp             SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC-GG
T ss_pred             EEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEC-CC
Confidence            9999999999999877652                   278999999999999999999999999999999999999 67


Q ss_pred             CceEEEeeeccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCccc
Q 004835          332 VKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRN  411 (728)
Q Consensus       332 ~~~kL~DFGlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~  411 (728)
                      +.+||+|||+|+.......                                                             
T Consensus       182 ~~~Ki~DFGlar~~~~~~~-------------------------------------------------------------  200 (308)
T 4gt4_A          182 LNVKISDLGLFREVYAADY-------------------------------------------------------------  200 (308)
T ss_dssp             GCEEECCSCCBCGGGGGGC-------------------------------------------------------------
T ss_pred             CCEEECCcccceeccCCCc-------------------------------------------------------------
Confidence            7899999999975211000                                                             


Q ss_pred             ccccCCCCCCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCcccccc
Q 004835          412 IINSQGADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYI  491 (728)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  491 (728)
                                                                                                      
T Consensus       201 --------------------------------------------------------------------------------  200 (308)
T 4gt4_A          201 --------------------------------------------------------------------------------  200 (308)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCC
Q 004835          492 TPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGP  571 (728)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~  571 (728)
                                                                           ....+..+||+.|||||++.+.. |+.
T Consensus       201 -----------------------------------------------------~~~~~~~~gt~~ymAPE~l~~~~-~s~  226 (308)
T 4gt4_A          201 -----------------------------------------------------YKLLGNSLLPIRWMAPEAIMYGK-FSI  226 (308)
T ss_dssp             -----------------------------------------------------BCSSSSSCBCGGGCCHHHHHHCC-CCH
T ss_pred             -----------------------------------------------------eeEecccccCCcccCHHHHhCCC-CCc
Confidence                                                                 00112456999999999996554 799


Q ss_pred             chhHHHHHHHHHHHhc-CCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccC
Q 004835          572 KLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKR  650 (728)
Q Consensus       572 ~~DIWSlG~il~eLlt-G~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  650 (728)
                      ++|||||||++|||+| |..||.+.+..++...+.. |                                        .+
T Consensus       227 ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~-~----------------------------------------~~  265 (308)
T 4gt4_A          227 DSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRN-R----------------------------------------QV  265 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHT-T----------------------------------------CC
T ss_pred             cchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc-C----------------------------------------CC
Confidence            9999999999999998 8999999887666554421 0                                        12


Q ss_pred             CcccccCchhHHHHHHHhcccCCCCCCCHHHHhcC
Q 004835          651 PDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKH  685 (728)
Q Consensus       651 ~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~H  685 (728)
                      +..++.+|+.+.+||.+||..||++|||+.|++++
T Consensus       266 ~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~  300 (308)
T 4gt4_A          266 LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSR  300 (308)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            23345688999999999999999999999999864

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=2.8e-49  Score=457.03  Aligned_cols=259  Identities=23%  Similarity=0.337  Sum_probs=215.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +++|++++.||+|+||+||+|+++.+|+.||||++....  ..+.+.+|+.+|+.++||| |++++++|.+...+|||||
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpn-Iv~l~~~~~~~~~~~iv~E  234 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT-LVNLHDAFEDDNEMVMIYE  234 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTT-BCCEEEEEECSSEEEEEEE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCC-CCeEEEEEEECCEEEEEEe
Confidence            578999999999999999999999999999999987543  3456889999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC-CCceEEEeeeccccccCCCCcc
Q 004835          278 HVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       278 ~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~-~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      ||.+|.|..++.    .+++.+++.|+.||+.||.|||++||+||||||+||||+.+ .+.+||+|||+|+......   
T Consensus       235 ~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~---  311 (573)
T 3uto_A          235 FMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ---  311 (573)
T ss_dssp             CCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS---
T ss_pred             ecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC---
Confidence            999988866542    38899999999999999999999999999999999999843 4689999999997521100   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       312 --------------------------------------------------------------------------------  311 (573)
T 3uto_A          312 --------------------------------------------------------------------------------  311 (573)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       312 --------------------------------------------------------------------------------  311 (573)
T 3uto_A          312 --------------------------------------------------------------------------------  311 (573)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                        .....+||+.|||||++.+.. |+.++||||||||+|||++|.+||
T Consensus       312 ----------------------------------~~~~~~GT~~y~APEv~~~~~-y~~~~DiWSlGvilyeml~G~~Pf  356 (573)
T 3uto_A          312 ----------------------------------SVKVTTGTAEFAAPEVAEGKP-VGYYTDMWSVGVLSYILLSGLSPF  356 (573)
T ss_dssp             ----------------------------------EEEEECSSGGGCCHHHHTTCC-BCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             ----------------------------------ceeeeEECccccCHHHhCCCC-CCcHHHHHHHHHHHHHHHHCCCCC
Confidence                                              011346999999999996654 699999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       593 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      .+.+...+...+..              ....++                        ...+..+++++.|||.+||..|
T Consensus       357 ~~~~~~~~~~~i~~--------------~~~~~~------------------------~~~~~~~s~~~~dli~~~L~~d  398 (573)
T 3uto_A          357 GGENDDETLRNVKS--------------CDWNMD------------------------DSAFSGISEDGKDFIRKLLLAD  398 (573)
T ss_dssp             CCSSHHHHHHHHHT--------------TCCCCC------------------------SGGGTTSCHHHHHHHHTTSCSS
T ss_pred             CCcCHHHHHHHHHh--------------CCCCCC------------------------cccccCCCHHHHHHHHHHccCC
Confidence            98877554332210              011111                        1223568899999999999999


Q ss_pred             CCCCCCHHHHhcCCCCccchhcc
Q 004835          673 PRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      |.+||||.|+|+||||+..++..
T Consensus       399 p~~R~t~~e~l~Hpw~~~~~~~~  421 (573)
T 3uto_A          399 PNTRMTIHQALEHPWLTPGNAPG  421 (573)
T ss_dssp             GGGSCCHHHHHHSTTTSCCCCTT
T ss_pred             hhHCcCHHHHhcCcCcCCCCCCC
Confidence            99999999999999999876543

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=5.8e-49  Score=420.90  Aligned_cols=144  Identities=23%  Similarity=0.290  Sum_probs=126.1

Q ss_pred             ccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          195 KVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       195 ~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      .+....++|.+.++||+|+||+||+|++.   ..||||+++...    ..+.|.+|+.++++++||| |+++++++. .+
T Consensus        30 ~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpN-IV~l~g~~~-~~  104 (307)
T 3omv_A           30 YWEIEASEVMLSTRIGSGSFGTVYKGKWH---GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVN-ILLFMGYMT-KD  104 (307)
T ss_dssp             CCBCCTTSCCEEEECCCCSSSEEEEEESS---SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTT-BCCEEEEEC-SS
T ss_pred             CcEEcHHHeEEeeEEeeCCCcEEEEEEEC---CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEE-CC
Confidence            34566789999999999999999999874   359999987432    2356889999999999999 999999875 46


Q ss_pred             eeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          271 SDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .+|||||||++|+|..++.    .+++.++..|+.||+.||+|||+++||||||||+||||+ +++.+||+|||+|+.
T Consensus       105 ~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~-~~~~~Ki~DFGla~~  181 (307)
T 3omv_A          105 NLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLH-EGLTVKIGDFGLATV  181 (307)
T ss_dssp             SCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEE-TTEEEEECCCSSCBC
T ss_pred             eEEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEEC-CCCcEEEeeccCcee
Confidence            7899999999999877652    389999999999999999999999999999999999999 778899999999975

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=9.2e-48  Score=419.30  Aligned_cols=148  Identities=21%  Similarity=0.281  Sum_probs=128.0

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCC-----CeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEE
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKND-----GTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFK  267 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~-----g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~  267 (728)
                      +....++|++.+.||+|+||+||+|++..+     ++.||||++.....   ...+.+|+.+|.++.|+++|++++++|.
T Consensus        59 wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~  138 (353)
T 4ase_A           59 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT  138 (353)
T ss_dssp             HBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEE
Confidence            445568999999999999999999998654     36899999876433   3468899999999988655999999886


Q ss_pred             e-CCeeEEEEeccCCCChHHHhhc-------------------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEe
Q 004835          268 C-GDSDCFVLEHVKHDRPEVLKKE-------------------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLF  327 (728)
Q Consensus       268 ~-~~~~~LV~E~~~~~~l~~l~~~-------------------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILl  327 (728)
                      . ++.+|||||||++|+|..+++.                   +++..+..|+.||+.||+|||+++||||||||+||||
T Consensus       139 ~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl  218 (353)
T 4ase_A          139 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILL  218 (353)
T ss_dssp             CTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEE
T ss_pred             ecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccceee
Confidence            5 4678999999999998877531                   7889999999999999999999999999999999999


Q ss_pred             ecCCCceEEEeeecccc
Q 004835          328 SCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       328 d~~~~~~kL~DFGlA~~  344 (728)
                      + +++.+||+|||+|+.
T Consensus       219 ~-~~~~vKi~DFGlar~  234 (353)
T 4ase_A          219 S-EKNVVKICDFGLARD  234 (353)
T ss_dssp             C-GGGCEEECCCGGGSC
T ss_pred             C-CCCCEEECcchhhhh
Confidence            9 667899999999975

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.8e-46  Score=394.00  Aligned_cols=281  Identities=25%  Similarity=0.398  Sum_probs=219.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      +++|++.+.||+|+||+||+|++..+|+.||||++....    ....+.+|+.++++++|+| |+++++++..++..|+|
T Consensus         1 l~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv   79 (292)
T 3o0g_A            1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN-IVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTT-BCCEEEEEEETTEEEEE
T ss_pred             CCCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCC-EeeEEeEEEeCCEEEEE
Confidence            468999999999999999999999999999999987432    2356789999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |||+.++++..+..   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++.......   
T Consensus        80 ~e~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~-~~~~~kl~Dfg~~~~~~~~~---  155 (292)
T 3o0g_A           80 FEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLIN-RNGELKLANFGLARAFGIPV---  155 (292)
T ss_dssp             EECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTSCEEECCCTTCEECCSCC---
T ss_pred             EecCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEc-CCCCEEEeecccceecCCcc---
Confidence            99999987776653   489999999999999999999999999999999999999 66789999999997521000   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (292)
T 3o0g_A          156 --------------------------------------------------------------------------------  155 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (292)
T 3o0g_A          156 --------------------------------------------------------------------------------  155 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                       ......+||+.|+|||++.+...++.++|||||||++|+|++|..||
T Consensus       156 ---------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~  202 (292)
T 3o0g_A          156 ---------------------------------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPL  202 (292)
T ss_dssp             ---------------------------------SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCS
T ss_pred             ---------------------------------ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCC
Confidence                                             00113468999999999987776799999999999999999988875


Q ss_pred             C-CCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          593 F-GDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       593 ~-~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      + +.+. +.+..+++..|.+............. +       ...+...      ...........++..+.+||.+||.
T Consensus       203 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~------~~~~~~~~~~~~~~~~~~li~~~L~  268 (292)
T 3o0g_A          203 FPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPD-Y-------KPYPMYP------ATTSLVNVVPKLNATGRDLLQNLLK  268 (292)
T ss_dssp             CCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTT-C-------CCCCCCC------TTCCCTTTSTTCCHHHHHHHHHHSC
T ss_pred             cCCCCHHHHHHHHHHHhCCCChhhhhhhccccc-c-------ccccccc------CCcchhhcccccChHHHHHHHHHhc
Confidence            4 4443 56777888777643211111100000 0       0000000      0011123345688999999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccch
Q 004835          671 VNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      +||++|||++|+|+||||+++.
T Consensus       269 ~dP~~R~t~~e~l~hp~f~~~~  290 (292)
T 3o0g_A          269 CNPVQRISAEEALQHPYFSDFC  290 (292)
T ss_dssp             SSGGGSCCHHHHHTSGGGTTC-
T ss_pred             cChhhCCCHHHHhcCcccccCC
Confidence            9999999999999999999864

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=2e-46  Score=403.80  Aligned_cols=256  Identities=23%  Similarity=0.317  Sum_probs=215.9

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .+.+++|++.+.||+|+||.||+|++..+|+.||||++....    ....+.+|+.+++.++|+| |+++++++...+..
T Consensus        11 ~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~l~~~~~~~~~~   89 (328)
T 3fe3_A           11 QPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPN-IVKLFEVIETEKTL   89 (328)
T ss_dssp             CCEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEE
T ss_pred             CCccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEEECCEE
Confidence            345679999999999999999999999999999999986532    2345789999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |+||||+.++.+..+.   ..+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++...... 
T Consensus        90 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~-~~~~~kl~DFG~a~~~~~~-  167 (328)
T 3fe3_A           90 YLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLD-ADMNIKIADFGFSNEFTVG-  167 (328)
T ss_dssp             EEEECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTSCEEECSTTCCGGGSSS-
T ss_pred             EEEEECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEc-CCCCEEEeeccCceecCCC-
Confidence            9999999998887654   3489999999999999999999999999999999999999 6678999999998642100 


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (328)
T 3fe3_A          168 --------------------------------------------------------------------------------  167 (328)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (328)
T 3fe3_A          168 --------------------------------------------------------------------------------  167 (328)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                          ......+||+.|+|||++.+....+.++|||||||++|+|++|+
T Consensus       168 ------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~  211 (328)
T 3fe3_A          168 ------------------------------------GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGS  211 (328)
T ss_dssp             ------------------------------------CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSS
T ss_pred             ------------------------------------CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCC
Confidence                                                00113469999999999987776678999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          590 TPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       590 ~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      .||.+.+...+...+..                                          ....++..+++++.+||.+||
T Consensus       212 ~pf~~~~~~~~~~~i~~------------------------------------------~~~~~p~~~s~~~~~li~~~L  249 (328)
T 3fe3_A          212 LPFDGQNLKELRERVLR------------------------------------------GKYRIPFYMSTDCENLLKRFL  249 (328)
T ss_dssp             CSSCCSSHHHHHHHHHH------------------------------------------CCCCCCTTSCHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHHHh------------------------------------------CCCCCCCCCCHHHHHHHHHHC
Confidence            99998876655443311                                          112233457889999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchh
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      ..||.+|||++|+|+||||+..++
T Consensus       250 ~~dP~~R~t~~eil~h~~~~~~~~  273 (328)
T 3fe3_A          250 VLNPIKRGTLEQIMKDRWINAGHE  273 (328)
T ss_dssp             CSSTTTSCCHHHHTTCTTTTTTCT
T ss_pred             CCChhHCcCHHHHhcCHhhcCCCc
Confidence            999999999999999999997664

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.5e-46  Score=409.03  Aligned_cols=269  Identities=23%  Similarity=0.370  Sum_probs=219.4

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCe
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~  271 (728)
                      ..+++|++.+.||+|+||.||+|++..+|+.||||++...     .....+.+|..++..+ +|++ |+++++++...+.
T Consensus        20 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~-Iv~l~~~~~~~~~   98 (353)
T 3txo_A           20 LGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPF-LTQLFCCFQTPDR   98 (353)
T ss_dssp             ---CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTT-BCCEEEEEECSSE
T ss_pred             CchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCc-eeeEEEEEEeCCE
Confidence            3467999999999999999999999999999999998743     3345678899999998 5777 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          272 DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      .|+||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+|+.....
T Consensus        99 ~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~-~~g~ikL~DFG~a~~~~~~  177 (353)
T 3txo_A           99 LFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLD-HEGHCKLADFGMCKEGICN  177 (353)
T ss_dssp             EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEEC-TTSCEEECCCTTCBCSCC-
T ss_pred             EEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEEC-CCCCEEEccccceeecccC
Confidence            999999999988876653   489999999999999999999999999999999999999 6678999999998631000


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (353)
T 3txo_A          178 --------------------------------------------------------------------------------  177 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (353)
T 3txo_A          178 --------------------------------------------------------------------------------  177 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                          .......+||+.|+|||++.+.. ++.++|||||||++|||++|
T Consensus       178 ------------------------------------~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~ell~G  220 (353)
T 3txo_A          178 ------------------------------------GVTTATFCGTPDYIAPEILQEML-YGPAVDWWAMGVLLYEMLCG  220 (353)
T ss_dssp             --------------------------------------------CCGGGCCHHHHHHHH-CTTHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------CccccccCCCcCeEChhhcCCCC-cCCccCCCcchHHHHHHHhC
Confidence                                                00011346999999999996655 69999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          589 RTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       589 ~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      ++||.+.+...+...+.                                          .....++..++..+.+||.+|
T Consensus       221 ~~Pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~~~~~~~li~~l  258 (353)
T 3txo_A          221 HAPFEAENEDDLFEAIL------------------------------------------NDEVVYPTWLHEDATGILKSF  258 (353)
T ss_dssp             SCSSCCSSHHHHHHHHH------------------------------------------HCCCCCCTTSCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHH------------------------------------------cCCCCCCCCCCHHHHHHHHHH
Confidence            99999887755443221                                          112234455789999999999


Q ss_pred             cccCCCCCCCH------HHHhcCCCCccchhcchHhHhhhccccc
Q 004835          669 LTVNPRLRISA------EDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       669 L~~dP~~Rpta------~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      |..||++||++      +|+++||||+++.+....++.+.+...+
T Consensus       259 L~~dP~~R~~~~~~~~~~~il~hp~f~~~~w~~l~~~~~~~p~~p  303 (353)
T 3txo_A          259 MTKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQLNHRQIEPPFRP  303 (353)
T ss_dssp             TCSSGGGSTTSGGGTCTHHHHTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred             hhhCHHHccCCcccCCHHHHhhCCcccCCCHHHHhcCcCCCCccC
Confidence            99999999998      8999999999998877666655554443

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=5.3e-46  Score=402.27  Aligned_cols=266  Identities=24%  Similarity=0.354  Sum_probs=222.1

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|++++.||+|+||.||+|++..+|+.||||++...     .....+.+|+.++..++|++ |+++++++...+..|
T Consensus         3 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~l~~~~~~~~~~~   81 (337)
T 1o6l_A            3 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF-LTALKYAFQTHDRLC   81 (337)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTT-BCCEEEEEECSSEEE
T ss_pred             ChHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCc-CcceEEEEEeCCEEE
Confidence            457899999999999999999999999999999998642     34556889999999999998 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+++...... 
T Consensus        82 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~-~~g~vkL~DFG~a~~~~~~~-  159 (337)
T 1o6l_A           82 FVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLD-KDGHIKITDFGLCKEGISDG-  159 (337)
T ss_dssp             EEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEEC-TTSCEEECCCTTCBCSCCTT-
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEEC-CCCCEEEeeccchhhcccCC-
Confidence            9999999998876653   389999999999999999999999999999999999999 66789999999986410000 


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (337)
T 1o6l_A          160 --------------------------------------------------------------------------------  159 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (337)
T 1o6l_A          160 --------------------------------------------------------------------------------  159 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                         ......+||+.|+|||++.+. .++.++|||||||++|||++|..
T Consensus       160 -----------------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~il~ell~g~~  203 (337)
T 1o6l_A          160 -----------------------------------ATMKTFCGTPEYLAPEVLEDN-DYGRAVDWWGLGVVMYEMMCGRL  203 (337)
T ss_dssp             -----------------------------------CCBCCCEECGGGCCGGGGSSS-CBCTTHHHHHHHHHHHHHHHSSC
T ss_pred             -----------------------------------CcccccccChhhCChhhhcCC-CCCchhhcccchhHHHHHhcCCC
Confidence                                               001145699999999999555 46999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.+...+...+.                                          .....++..+++++.+||.+||.
T Consensus       204 Pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~~li~~lL~  241 (337)
T 1o6l_A          204 PFYNQDHERLFELIL------------------------------------------MEEIRFPRTLSPEAKSLLAGLLK  241 (337)
T ss_dssp             SSCCSSHHHHHHHHH------------------------------------------HCCCCCCTTSCHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHH------------------------------------------cCCCCCCCCCCHHHHHHHHHHhh
Confidence            999877655544331                                          11223445678999999999999


Q ss_pred             cCCCCCC-----CHHHHhcCCCCccchhcchHhHhhhccc
Q 004835          671 VNPRLRI-----SAEDALKHEFFAPCHEMLRKQKLLRQGS  705 (728)
Q Consensus       671 ~dP~~Rp-----ta~e~L~Hp~f~~~~~~~~~~~~~~~~~  705 (728)
                      .||++||     +++|+++||||+++.+....++.+.+..
T Consensus       242 ~dP~~R~g~~~~~~~ei~~h~~f~~~~~~~~~~~~~~pp~  281 (337)
T 1o6l_A          242 KDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLPPF  281 (337)
T ss_dssp             SSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSC
T ss_pred             cCHHHhcCCCCCCHHHHHcCCCcCCCCHHHHHhCCCCCCC
Confidence            9999999     8999999999999988766655544443

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=4.1e-46  Score=396.73  Aligned_cols=284  Identities=27%  Similarity=0.432  Sum_probs=220.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      -.++|++.+.||+|+||+||+|++. +|+.||||++....    ....+.+|+.++++++|+| |+++++++..+...|+
T Consensus        19 l~~~y~~~~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~l   96 (311)
T 3niz_A           19 LMEKYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPN-IVSLIDVIHSERCLTL   96 (311)
T ss_dssp             SSCEEEEEEEEEECSSCEEEEEEET-TSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTT-BCCEEEEECCSSCEEE
T ss_pred             hHhhhHhhhhccCCCCeEEEEEEEC-CCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCC-EeeeeeEEccCCEEEE
Confidence            4579999999999999999999995 59999999987432    2356789999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          275 VLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       275 V~E~~~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      ||||+.+++...+...   +++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++.......  
T Consensus        97 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~-~~~~~kl~Dfg~a~~~~~~~--  173 (311)
T 3niz_A           97 VFEFMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLIN-SDGALKLADFGLARAFGIPV--  173 (311)
T ss_dssp             EEECCSEEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTCCEEECCCTTCEETTSCC--
T ss_pred             EEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEEC-CCCCEEEccCcCceecCCCc--
Confidence            9999998766665432   88999999999999999999999999999999999999 66789999999997521000  


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (311)
T 3niz_A          174 --------------------------------------------------------------------------------  173 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (311)
T 3niz_A          174 --------------------------------------------------------------------------------  173 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                        ......+||+.|+|||++.+...++.++|||||||++|+|++|+.|
T Consensus       174 ----------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p  219 (311)
T 3niz_A          174 ----------------------------------RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPL  219 (311)
T ss_dssp             ----------------------------------C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------------------------ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCC
Confidence                                              0011346899999999997766689999999999999999999999


Q ss_pred             CCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          592 FFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       592 F~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      |.+... +.+..++..+|.+..........    .+  .+............|..       +...+++++.+||.+||.
T Consensus       220 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~li~~~L~  286 (311)
T 3niz_A          220 FPGVTDDDQLPKIFSILGTPNPREWPQVQE----LP--LWKQRTFQVFEKKPWSS-------IIPGFCQEGIDLLSNMLC  286 (311)
T ss_dssp             CCCSSTTTHHHHHHHHHCCCCTTTSGGGTT----SH--HHHSCCCCCCCCCCHHH-------HSTTCCHHHHHHHHHHSC
T ss_pred             CCCCChHHHHHHHHHHHCCCChHHhhhhhc----cc--hhhhcccccccCCcHHH-------hCcccCHHHHHHHHHHcC
Confidence            987655 67788888887643211111000    00  00001111111112221       234578899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccchhc
Q 004835          671 VNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      +||++|||++|+|+||||+++...
T Consensus       287 ~dP~~Rpt~~ell~hp~f~~~~~~  310 (311)
T 3niz_A          287 FDPNKRISARDAMNHPYFKDLDPQ  310 (311)
T ss_dssp             SCTTTSCCHHHHHTSGGGTTSCTT
T ss_pred             CChhHCCCHHHHhcCcccccCCcc
Confidence            999999999999999999987653

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=3.3e-46  Score=420.82  Aligned_cols=291  Identities=24%  Similarity=0.333  Sum_probs=220.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeC------
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCG------  269 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~------  269 (728)
                      .++|++++.||+|+||+||+|++..+|+.||||++...    .....+.+|+.+++.++|+| |+++++++...      
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~l~~~~~~~~~~~~~  139 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN-IISLLNVFTPQKTLEEF  139 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTT-BCCCSEEECSCCSTTTC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCC-CCcEEEEEccCCccccC
Confidence            57899999999999999999999999999999998743    23456789999999999999 99999999654      


Q ss_pred             CeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          270 DSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      ...|+||||+.++++..+...+++..++.++.||+.||+|||++||+||||||+||||+ .++.+||+|||+|+..... 
T Consensus       140 ~~~~lv~E~~~~~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~-~~~~~kl~DFG~a~~~~~~-  217 (464)
T 3ttj_A          140 QDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK-SDCTLKILDFGLARTAGTS-  217 (464)
T ss_dssp             CEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTSCEEECCCCCC-----C-
T ss_pred             CeEEEEEeCCCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEe-CCCCEEEEEEEeeeecCCC-
Confidence            35799999999998887777799999999999999999999999999999999999999 6678999999999741100 


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (464)
T 3ttj_A          218 --------------------------------------------------------------------------------  217 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (464)
T 3ttj_A          218 --------------------------------------------------------------------------------  217 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                          ...+..+||++|+|||++.+.. |+.++|||||||++|||++|+
T Consensus       218 ------------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlG~il~ell~g~  260 (464)
T 3ttj_A          218 ------------------------------------FMMTPYVVTRYYRAPEVILGMG-YKENVDIWSVGCIMGEMVRHK  260 (464)
T ss_dssp             ------------------------------------CCC----CCCTTCCHHHHTTCC-CCTTHHHHHHHHHHHHHHHSS
T ss_pred             ------------------------------------cccCCCcccccccCHHHHcCCC-CCHHHHHHHHHHHHHHHHhCC
Confidence                                                0112457999999999997664 699999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhh--hhccCCcccccCchhHHHHHH
Q 004835          590 TPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCK--LITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       590 ~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      +||.+.+. +++..+++.+|.+....+..+......|   ...........+..+..  ......+.....++++.|||.
T Consensus       261 ~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~  337 (464)
T 3ttj_A          261 ILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNY---VENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLS  337 (464)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHH---HTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhH---hhcccccCCCChHHhCcccccccccccccccCHHHHHHHH
Confidence            99998776 6789999999986544332221100000   00000011111111100  000011112223678999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccchh
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      +||.+||++||||+|+|+||||+..+.
T Consensus       338 ~mL~~dP~~R~ta~e~L~Hp~~~~~~~  364 (464)
T 3ttj_A          338 KMLVIDPAKRISVDDALQHPYINVWYD  364 (464)
T ss_dssp             HHSCSSTTTSCCHHHHHTSTTTGGGCC
T ss_pred             HHcCCChhhCCCHHHHhcChhhhhccC
Confidence            999999999999999999999986553

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.1e-46  Score=410.65  Aligned_cols=315  Identities=24%  Similarity=0.376  Sum_probs=218.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcC-CCCceEEecceEEeCC--ee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFG-GKNFIIKYEGCFKCGD--SD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~~--~~  272 (728)
                      +++|++.+.||+|+||.||+|.+..+|+.||||++...    .....+.+|+.++..+. |+| |+++++++...+  ..
T Consensus         8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~n-iv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHEN-IVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTT-BCCEEEEEECTTSSCE
T ss_pred             cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCC-CCeeeeEEecCCCCEE
Confidence            36899999999999999999999999999999988643    23455778999999998 888 999999997544  78


Q ss_pred             EEEEeccCCCChHHHhh-cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          273 CFVLEHVKHDRPEVLKK-EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      |+||||+++++...+.. .+++..+..++.||+.||+|||++||+||||||+||||+ .++.+||+|||+|+........
T Consensus        87 ~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~-~~~~~kl~DFG~a~~~~~~~~~  165 (388)
T 3oz6_A           87 YLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLN-AECHVKVADFGLSRSFVNIRRV  165 (388)
T ss_dssp             EEEEECCSEEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTCCEEECCCTTCEESSSCCCC
T ss_pred             EEEecccCcCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEc-CCCCEEecCCcccccccccccc
Confidence            99999999755444443 488999999999999999999999999999999999999 6678999999999853211100


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                      ...      .+                                            ...                      
T Consensus       166 ~~~------~~--------------------------------------------~~~----------------------  173 (388)
T 3oz6_A          166 TNN------IP--------------------------------------------LSI----------------------  173 (388)
T ss_dssp             CCC------GG--------------------------------------------GCC----------------------
T ss_pred             ccc------cc--------------------------------------------ccc----------------------
Confidence            000      00                                            000                      


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                       ....                                                                           
T Consensus       174 -~~~~---------------------------------------------------------------------------  177 (388)
T 3oz6_A          174 -NENT---------------------------------------------------------------------------  177 (388)
T ss_dssp             -C------------------------------------------------------------------------------
T ss_pred             -cccc---------------------------------------------------------------------------
Confidence             0000                                                                           


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                 ..........+..+||++|+|||++.+...++.++||||||||+|||++|++|
T Consensus       178 ---------------------------~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~p  230 (388)
T 3oz6_A          178 ---------------------------ENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPI  230 (388)
T ss_dssp             ---------------------------------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             ---------------------------cccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCC
Confidence                                       00000111234568999999999998767789999999999999999999999


Q ss_pred             CCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhh----cc----cCCCCCCchhhhhhhccCCcccccCchhHH
Q 004835          592 FFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLY----AA----KSLPPINLPEWCKLITKRPDFLEVIPSSLF  662 (728)
Q Consensus       592 F~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (728)
                      |.+.+. +++..++..+|.+....+..+..   .|.....    ..    ..........|...... ......+++++.
T Consensus       231 f~~~~~~~~~~~i~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  306 (388)
T 3oz6_A          231 FPGSSTMNQLERIIGVIDFPSNEDVESIQS---PFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLK-INPKADCNEEAL  306 (388)
T ss_dssp             CCCSSHHHHHHHHHHHHCCCCHHHHHTSCC---SSHHHHHHHHHHHCC-----CCCCHHHHHHHHHH-HCTTCCCCHHHH
T ss_pred             CCCCCHHHHHHHHHHhcCCCCHHHHHhccC---HHHHHHHHhCcccccccCCCHHHhCcchhhhccc-ccccccCCHHHH
Confidence            998776 67888888889876554433221   1111000    00    00001111223222111 112236789999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          663 DLVDKCLTVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       663 dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      +||.+||.+||++||||+|+|+||||+.++...
T Consensus       307 dll~~~L~~dP~~R~t~~e~l~Hp~~~~~~~~~  339 (388)
T 3oz6_A          307 DLLDKLLQFNPNKRISANDALKHPFVSIFHNPN  339 (388)
T ss_dssp             HHHHHHCCSSGGGSCCHHHHTTSTTTTTTCCGG
T ss_pred             HHHHHhhccCcccCCCHHHHhCCHHHHHhcCCc
Confidence            999999999999999999999999999877543

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=5.3e-46  Score=416.55  Aligned_cols=315  Identities=20%  Similarity=0.279  Sum_probs=212.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeC-----C
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCG-----D  270 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~-----~  270 (728)
                      .++|++.+.||+|+||+||+|++..+|+.||||++....    ...++.+|+.+|..++|+| |+++++++...     .
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~~~  130 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDH-VVKVLDIVIPKDVEKFD  130 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTT-BCCEEEECCCSCTTTCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCC-CCceEEEEecCCcccCc
Confidence            368999999999999999999999999999999986532    2356789999999999999 99999998433     5


Q ss_pred             eeEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          271 SDCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      .+|+||||+++++...+..  .+++..++.|+.||+.||.|||++|||||||||+||||+ .++.+||+|||+|+.....
T Consensus       131 ~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~-~~~~~kl~DFGla~~~~~~  209 (458)
T 3rp9_A          131 ELYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVN-QDCSVKVCDFGLARTVDYP  209 (458)
T ss_dssp             CEEEEECCCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEEC-TTCCEEECCCTTCBCTTSC
T ss_pred             eEEEEEeccccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEEC-CCCCEeecccccchhccCc
Confidence            7899999998765555543  389999999999999999999999999999999999999 6678999999999863211


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                      ......    ....|..                                  ......+|+                    
T Consensus       210 ~~~~~~----~~~~~~~----------------------------------~~~~~~~~~--------------------  231 (458)
T 3rp9_A          210 ENGNSQ----LPISPRE----------------------------------DDMNLVTFP--------------------  231 (458)
T ss_dssp             TTCCCC----CC--------------------------------------------------------------------
T ss_pred             cccccc----cccCccc----------------------------------ccccccccc--------------------
Confidence            100000    0000000                                  000000000                    


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (458)
T 3rp9_A          232 --------------------------------------------------------------------------------  231 (458)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhc-
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-  587 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLlt-  587 (728)
                                                     .........+..+||++|+|||++.....|+.++||||||||+|||++ 
T Consensus       232 -------------------------------~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg  280 (458)
T 3rp9_A          232 -------------------------------HTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM  280 (458)
T ss_dssp             --------------------------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred             -------------------------------ccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence                                           000111223467899999999998777778999999999999999999 


Q ss_pred             ----------CCCCCCCCC---------------------hHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCC
Q 004835          588 ----------GRTPFFGDP---------------------EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLP  636 (728)
Q Consensus       588 ----------G~~PF~~~~---------------------~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  636 (728)
                                |+++|.+..                     .+++..|+..+|.+....+..+....     .......++
T Consensus       281 ~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~-----~~~~~~~~~  355 (458)
T 3rp9_A          281 IKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKED-----AKRYIRIFP  355 (458)
T ss_dssp             STTTCSSGGGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHH-----HHHHHTTSC
T ss_pred             ccccccccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHH-----HHHHHHhcC
Confidence                      778887654                     36788899999987655543322100     000001111


Q ss_pred             CCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhcchH
Q 004835          637 PINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~  697 (728)
                      ......+       .+....+++++.|||.+||.+||++|||++|||+||||+++++....
T Consensus       356 ~~~~~~~-------~~~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp~f~~~~~~~~e  409 (458)
T 3rp9_A          356 KREGTDL-------AERFPASSADAIHLLKRMLVFNPNKRITINECLAHPFFKEVRIAEVE  409 (458)
T ss_dssp             CCCCCCG-------GGGSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTCCGGGC
T ss_pred             CCCCCCH-------HHHCCCCCHHHHHHHHHHhccCccccCCHHHHhcCHhhhhcCCCccC
Confidence            1111111       12234568999999999999999999999999999999999865543

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-45  Score=395.96  Aligned_cols=263  Identities=22%  Similarity=0.310  Sum_probs=220.0

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|++.+.||+|+||.||+|++..+|+.||||++...     ...+.+.+|+.++..+.|++ |+++++++.+....|
T Consensus         4 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-Iv~~~~~~~~~~~~~   82 (318)
T 1fot_A            4 SLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPF-IIRMWGTFQDAQQIF   82 (318)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTT-BCCEEEEEECSSEEE
T ss_pred             ChHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCC-CceEeEEEEeCCEEE
Confidence            457899999999999999999999999999999998643     34456788999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||+++....   
T Consensus        83 lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~-~~g~~kL~Dfg~a~~~~~---  158 (318)
T 1fot_A           83 MIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLD-KNGHIKITDFGFAKYVPD---  158 (318)
T ss_dssp             EEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEEC-TTSCEEECCCSSCEECSS---
T ss_pred             EEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEc-CCCCEEEeecCcceecCC---
Confidence            9999999988877654   389999999999999999999999999999999999999 667899999999874110   


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (318)
T 1fot_A          159 --------------------------------------------------------------------------------  158 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (318)
T 1fot_A          159 --------------------------------------------------------------------------------  158 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                          .....+||+.|+|||++.+.. ++.++|||||||++|||++|..
T Consensus       159 ------------------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~ell~g~~  201 (318)
T 1fot_A          159 ------------------------------------VTYTLCGTPDYIAPEVVSTKP-YNKSIDWWSFGILIYEMLAGYT  201 (318)
T ss_dssp             ------------------------------------CBCCCCSCTTTCCHHHHTTCC-BCTTHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------------ccccccCCccccCHhHhcCCC-CCcccchhhhHHHHHHHHhCCC
Confidence                                                001346899999999996554 6999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.+...+...+.                                          .....++..++.++.+||.+||.
T Consensus       202 pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~~~~~~~li~~lL~  239 (318)
T 1fot_A          202 PFYDSNTMKTYEKIL------------------------------------------NAELRFPPFFNEDVKDLLSRLIT  239 (318)
T ss_dssp             TTCCSSHHHHHHHHH------------------------------------------HCCCCCCTTSCHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHH------------------------------------------hCCCCCCCCCCHHHHHHHHHHhc
Confidence            998876644332211                                          11223445678999999999999


Q ss_pred             cCCCCCC-----CHHHHhcCCCCccchhcchHhHhhhccc
Q 004835          671 VNPRLRI-----SAEDALKHEFFAPCHEMLRKQKLLRQGS  705 (728)
Q Consensus       671 ~dP~~Rp-----ta~e~L~Hp~f~~~~~~~~~~~~~~~~~  705 (728)
                      .||++||     +++++++||||+++.+....++.+.+..
T Consensus       240 ~dp~~R~~~~~~~~~~i~~hp~f~~~~~~~~~~~~~~~p~  279 (318)
T 1fot_A          240 RDLSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNIETPY  279 (318)
T ss_dssp             SCTTTCTTSSTTTTHHHHTSGGGSSCCHHHHHTTCSCCSC
T ss_pred             cCHHHcCCCcCCCHHHHhcCccccCCCHHHHHhCCCCCCC
Confidence            9999999     8999999999999987666555444433

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=3.3e-45  Score=390.11  Aligned_cols=289  Identities=26%  Similarity=0.438  Sum_probs=228.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcC-CCCceEEecceEEe--CCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFG-GKNFIIKYEGCFKC--GDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~--~~~~~LV~  276 (728)
                      .++|++.+.||+|+||.||+|++..+++.||||++... ....+.+|+.++.++. |+| |+++++++..  ....++||
T Consensus        35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~E~~~l~~l~~~~~-i~~~~~~~~~~~~~~~~lv~  112 (330)
T 3nsz_A           35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-KKKKIKREIKILENLRGGPN-IITLADIVKDPVSRTPALVF  112 (330)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-CHHHHHHHHHHHHHHTTSTT-BCCEEEEEECTTTCCEEEEE
T ss_pred             CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc-chHHHHHHHHHHHHcCCCCC-EEEeeeeeccCCCCceEEEE
Confidence            46899999999999999999999999999999998743 3566889999999998 777 9999999987  66789999


Q ss_pred             eccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCC
Q 004835          277 EHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLP  356 (728)
Q Consensus       277 E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~  356 (728)
                      ||+.++++..+.+.+++..++.++.||+.||.|||++||+||||||+|||++.++..+||+|||++.......       
T Consensus       113 e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~-------  185 (330)
T 3nsz_A          113 EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ-------  185 (330)
T ss_dssp             ECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTC-------
T ss_pred             eccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCC-------
Confidence            9999999999988999999999999999999999999999999999999999666689999999997521000       


Q ss_pred             CCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCcc
Q 004835          357 GTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPA  436 (728)
Q Consensus       357 ~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (728)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (330)
T 3nsz_A          186 --------------------------------------------------------------------------------  185 (330)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCc
Q 004835          437 ERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDL  516 (728)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  516 (728)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (330)
T 3nsz_A          186 --------------------------------------------------------------------------------  185 (330)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCC
Q 004835          517 SDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP  596 (728)
Q Consensus       517 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~  596 (728)
                                                    .....+||+.|+|||++.+...++.++|||||||++|+|++|+.||....
T Consensus       186 ------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~  235 (330)
T 3nsz_A          186 ------------------------------EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGH  235 (330)
T ss_dssp             ------------------------------CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCS
T ss_pred             ------------------------------ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCC
Confidence                                          01133589999999999776668999999999999999999999996543


Q ss_pred             --hHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCC
Q 004835          597 --EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR  674 (728)
Q Consensus       597 --~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~  674 (728)
                        .+.+..+...+|.+..+........  .++......  ........|...  ........+++++.+||.+||.+||+
T Consensus       236 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~  309 (330)
T 3nsz_A          236 DNYDQLVRIAKVLGTEDLYDYIDKYNI--ELDPRFNDI--LGRHSRKRWERF--VHSENQHLVSPEALDFLDKLLRYDHQ  309 (330)
T ss_dssp             SHHHHHHHHHHHHCHHHHHHHHHHTTC--CCCTHHHHH--HCCCCCCCGGGG--CCTTTGGGCCHHHHHHHHTTSCSSGG
T ss_pred             chHHHHHHHHHhcCCchhhhHHHHhcc--ccccchhhh--hhhccccchhhh--ccccccccCCHHHHHHHHHHhcCCcc
Confidence              3678888888887666554332221  111111000  001111122221  12233455889999999999999999


Q ss_pred             CCCCHHHHhcCCCCccchh
Q 004835          675 LRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       675 ~Rpta~e~L~Hp~f~~~~~  693 (728)
                      +||||+|+|+||||+++.+
T Consensus       310 ~Rpta~e~l~hp~f~~~~~  328 (330)
T 3nsz_A          310 SRLTAREAMEHPYFYTVVK  328 (330)
T ss_dssp             GSCCHHHHHTSGGGTTCC-
T ss_pred             cCCCHHHHhcCccHhhhcc
Confidence            9999999999999998764

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=1.5e-45  Score=409.76  Aligned_cols=281  Identities=27%  Similarity=0.455  Sum_probs=226.0

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeC------CeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCG------DSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~------~~~~  273 (728)
                      ..+|++.+.||+|+||.||+|++..+|+.||||++....  ....+|+.+++.++|+| |++++++|...      .+++
T Consensus        53 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~E~~il~~l~hpn-iv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           53 EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK--RFKNRELQIMRKLDHCN-IVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT--TSCCHHHHHHHTCCCTT-BCCEEEEEEEEETTTTEEEEE
T ss_pred             cceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc--hhHHHHHHHHHHcCCCC-ccceeeEEeccCCCCcceeEE
Confidence            347999999999999999999999999999999886542  23347999999999999 99998887532      2468


Q ss_pred             EEEeccCCCChHHHh------hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccC
Q 004835          274 FVLEHVKHDRPEVLK------KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFD  347 (728)
Q Consensus       274 LV~E~~~~~~l~~l~------~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~  347 (728)
                      +||||+++++...+.      ..+++..++.++.||+.||.|||++||+||||||+||||+.++..+||+|||+++....
T Consensus       130 lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~  209 (420)
T 1j1b_A          130 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR  209 (420)
T ss_dssp             EEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             eehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhhhccc
Confidence            999999987655443      23889999999999999999999999999999999999996667789999999974210


Q ss_pred             CCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccc
Q 004835          348 GSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAK  427 (728)
Q Consensus       348 ~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~  427 (728)
                      ..                                                                              
T Consensus       210 ~~------------------------------------------------------------------------------  211 (420)
T 1j1b_A          210 GE------------------------------------------------------------------------------  211 (420)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             cccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCC
Q 004835          428 EATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAG  507 (728)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (728)
                                                                                                      
T Consensus       212 --------------------------------------------------------------------------------  211 (420)
T 1j1b_A          212 --------------------------------------------------------------------------------  211 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhc
Q 004835          508 LMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI  587 (728)
Q Consensus       508 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLlt  587 (728)
                                                             .....+||+.|+|||++.+...++.++||||||||+|||++
T Consensus       212 ---------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~  252 (420)
T 1j1b_A          212 ---------------------------------------PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLL  252 (420)
T ss_dssp             ---------------------------------------CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHh
Confidence                                                   01134689999999999777668999999999999999999


Q ss_pred             CCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          588 GRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       588 G~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      |++||.+.+. +++.++++.+|.+....+.........        ..++......|...      +...++.++.+||.
T Consensus       253 G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~--------~~~p~~~~~~~~~~------~~~~~~~~~~~Li~  318 (420)
T 1j1b_A          253 GQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTE--------FKFPQIKAHPWTKV------FRPRTPPEAIALCS  318 (420)
T ss_dssp             SSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCC--------CCCCCCCCCCHHHH------SCTTSCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhh--------hccCccCCCCHHHh------cCCCCCHHHHHHHH
Confidence            9999998775 679999999998776665554332211        12233334445432      33567899999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      +||.+||.+|||+.|+|+||||..+++.
T Consensus       319 ~~L~~dP~~R~t~~e~l~hp~f~~~~~~  346 (420)
T 1j1b_A          319 RLLEYTPTARLTPLEACAHSFFDELRDP  346 (420)
T ss_dssp             HHSCSSGGGSCCHHHHHTSGGGGGGGCT
T ss_pred             HhccCChhHCCCHHHHhCCHhhcccccc
Confidence            9999999999999999999999987654

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.5e-45  Score=386.73  Aligned_cols=279  Identities=26%  Similarity=0.396  Sum_probs=214.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      +++|++.+.||+|+||+||+|++ .+|+.||||++....    ....+.+|+.++++++|+| |+++++++...+..|+|
T Consensus         1 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv   78 (288)
T 1ob3_A            1 MEKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN-IVKLYDVIHTKKRLVLV   78 (288)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTT-BCCEEEEEECSSCEEEE
T ss_pred             CccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCC-EeeeeeEEccCCeEEEE
Confidence            46899999999999999999999 579999999986432    2356789999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          276 LEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       276 ~E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |||+.+++...+.   ..+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++.......   
T Consensus        79 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~~---  154 (288)
T 1ob3_A           79 FEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLIN-REGELKIADFGLARAFGIPV---  154 (288)
T ss_dssp             EECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTSCEEECCTTHHHHHCC-----
T ss_pred             EEecCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEc-CCCCEEEeECccccccCccc---
Confidence            9999985555443   2488999999999999999999999999999999999999 66789999999987421000   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (288)
T 1ob3_A          155 --------------------------------------------------------------------------------  154 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (288)
T 1ob3_A          155 --------------------------------------------------------------------------------  154 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                       ......+||+.|+|||++.+...++.++|||||||++|+|++|..||
T Consensus       155 ---------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf  201 (288)
T 1ob3_A          155 ---------------------------------RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLF  201 (288)
T ss_dssp             ----------------------------------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ---------------------------------cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence                                             00113358999999999977666799999999999999999999999


Q ss_pred             CCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          593 FGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       593 ~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      .+.+. +.+..+++.+|.+.......... ...+..      ..+......|       ..+...+++++.+||.+||..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~-------~~~~~~~~~~~~~li~~~L~~  267 (288)
T 1ob3_A          202 PGVSEADQLMRIFRILGTPNSKNWPNVTE-LPKYDP------NFTVYEPLPW-------ESFLKGLDESGIDLLSKMLKL  267 (288)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCTTTSTTGGG-STTCCT------TCCCCCCCCG-------GGTCCSCCHHHHHHHHHHTCS
T ss_pred             CCCCHHHHHHHHHHHHCCCChhhchhhhc-cccccc------ccccccCccH-------HHHhhhcCHHHHHHHHHHcCC
Confidence            98765 56777777777532111000000 000000      0000111111       123456889999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccc
Q 004835          672 NPRLRISAEDALKHEFFAPC  691 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~  691 (728)
                      ||++|||++|+|+||||++.
T Consensus       268 dP~~Rpt~~e~l~hp~f~~~  287 (288)
T 1ob3_A          268 DPNQRITAKQALEHAYFKEN  287 (288)
T ss_dssp             STTTSCCHHHHHTSGGGGC-
T ss_pred             CcccCCCHHHHhcCcchhhc
Confidence            99999999999999999874

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.8e-45  Score=402.90  Aligned_cols=284  Identities=26%  Similarity=0.446  Sum_probs=226.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEe-----------
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKC-----------  268 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~-----------  268 (728)
                      .++|.+.+.||+|+||+||+|++..+|+.||||++.....  ...+|+.+++.++|+| |++++++|..           
T Consensus         6 ~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~--~~~~E~~il~~l~hpn-Iv~l~~~~~~~~~~~~~~~~~   82 (383)
T 3eb0_A            6 SKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR--YKNRELDIMKVLDHVN-IIKLVDYFYTTGDEEPKPPQP   82 (383)
T ss_dssp             CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT--SCCHHHHHHTTCCCTT-BCCEEEEEEEC----------
T ss_pred             cceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc--hHHHHHHHHHHcCCCC-ccchhheeeecCccccccccc
Confidence            4689999999999999999999999999999998865422  2347999999999999 9999998843           


Q ss_pred             ---------------------------CCeeEEEEeccCCCChHHHh------hcCChHHHHHHHHHHHHHHHHHHhCCc
Q 004835          269 ---------------------------GDSDCFVLEHVKHDRPEVLK------KEIDLSQLQWYGYCLFRALASLHKQGI  315 (728)
Q Consensus       269 ---------------------------~~~~~LV~E~~~~~~l~~l~------~~l~~~~~~~i~~QIl~aL~yLHs~gI  315 (728)
                                                 ....++||||+++++...+.      ..+++..++.++.||+.||.|||++||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi  162 (383)
T 3eb0_A           83 PDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGI  162 (383)
T ss_dssp             ---------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred             ccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence                                       34589999999976444433      238999999999999999999999999


Q ss_pred             EeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccch
Q 004835          316 VHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKR  395 (728)
Q Consensus       316 IHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (728)
                      +||||||+|||++..++.+||+|||+|+......                                              
T Consensus       163 ~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~----------------------------------------------  196 (383)
T 3eb0_A          163 CHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE----------------------------------------------  196 (383)
T ss_dssp             ECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS----------------------------------------------
T ss_pred             ccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC----------------------------------------------
Confidence            9999999999998667889999999997521000                                              


Q ss_pred             hhhhccccccCCCcccccccCCCCCCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccc
Q 004835          396 KVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRK  475 (728)
Q Consensus       396 ~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  475 (728)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (383)
T 3eb0_A          197 --------------------------------------------------------------------------------  196 (383)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCC
Q 004835          476 RVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTK  555 (728)
Q Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~  555 (728)
                                                                                             .....+||+
T Consensus       197 -----------------------------------------------------------------------~~~~~~~t~  205 (383)
T 3eb0_A          197 -----------------------------------------------------------------------PSVAYICSR  205 (383)
T ss_dssp             -----------------------------------------------------------------------CCCCCCCCS
T ss_pred             -----------------------------------------------------------------------CCcCcccCC
Confidence                                                                                   011345899


Q ss_pred             CcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccC
Q 004835          556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKS  634 (728)
Q Consensus       556 ~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  634 (728)
                      .|+|||++.+...++.++|||||||++|+|++|++||.+.+. +.+..+++.+|.+....+........        ...
T Consensus       206 ~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~--------~~~  277 (383)
T 3eb0_A          206 FYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYT--------EVR  277 (383)
T ss_dssp             SCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC----------CC
T ss_pred             CccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccc--------ccc
Confidence            999999998777689999999999999999999999998766 67899999999877666655433211        122


Q ss_pred             CCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhcchH
Q 004835          635 LPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~  697 (728)
                      ++......|...      ++..++.++.+||.+||.+||++|||+.|+|+||||+++......
T Consensus       278 ~~~~~~~~~~~~------~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~~  334 (383)
T 3eb0_A          278 FPTLKAKDWRKI------LPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHLRNSYES  334 (383)
T ss_dssp             CCCCCCCCHHHH------SCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHHHHC---
T ss_pred             CCccCcccHHhh------CCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHHHhhccc
Confidence            333344445432      445688999999999999999999999999999999988765443

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=7.9e-46  Score=402.33  Aligned_cols=264  Identities=25%  Similarity=0.376  Sum_probs=218.8

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCe
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~  271 (728)
                      ..+++|.+.+.||+|+||.||+|+++.+|+.||||++...     .....+.+|..++..+ .|++ |+++++++.+.+.
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~-iv~l~~~~~~~~~   92 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPF-LTHMFCTFQTKEN   92 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTT-BCCEEEEEECSSE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCC-CCcEEEEEEeCCE
Confidence            4568999999999999999999999999999999998743     3445677899999887 7887 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          272 DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      .|+||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+++.....
T Consensus        93 ~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~-~~g~vkL~DFG~a~~~~~~  171 (345)
T 1xjd_A           93 LFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLD-KDGHIKIADFGMCKENMLG  171 (345)
T ss_dssp             EEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEEC-TTSCEEECCCTTCBCCCCT
T ss_pred             EEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEEC-CCCCEEEeEChhhhhcccC
Confidence            999999999988877653   489999999999999999999999999999999999999 6668999999998641000


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                      .                                                                               
T Consensus       172 ~-------------------------------------------------------------------------------  172 (345)
T 1xjd_A          172 D-------------------------------------------------------------------------------  172 (345)
T ss_dssp             T-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (345)
T 1xjd_A          173 --------------------------------------------------------------------------------  172 (345)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                           ......+||+.|+|||++.+.. ++.++|||||||++|||++|
T Consensus       173 -------------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~ell~g  214 (345)
T 1xjd_A          173 -------------------------------------AKTNTFCGTPDYIAPEILLGQK-YNHSVDWWSFGVLLYEMLIG  214 (345)
T ss_dssp             -------------------------------------CCBCCCCSCGGGCCHHHHTTCC-BCTHHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------CcccCCCCCcccCChhhhcCCC-CCChhhhHHHHHHHHHHhcC
Confidence                                                 0012456999999999996654 69999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          589 RTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       589 ~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      ..||.+.+...+...+.                                          ...+.++..++.++.+||.+|
T Consensus       215 ~~Pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~~li~~l  252 (345)
T 1xjd_A          215 QSPFHGQDEEELFHSIR------------------------------------------MDNPFYPRWLEKEAKDLLVKL  252 (345)
T ss_dssp             SCSSCCSSHHHHHHHHH------------------------------------------HCCCCCCTTSCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHH------------------------------------------hCCCCCCcccCHHHHHHHHHH
Confidence            99999887765544331                                          112233455789999999999


Q ss_pred             cccCCCCCCCHH-HHhcCCCCccchhcchHhHhhh
Q 004835          669 LTVNPRLRISAE-DALKHEFFAPCHEMLRKQKLLR  702 (728)
Q Consensus       669 L~~dP~~Rpta~-e~L~Hp~f~~~~~~~~~~~~~~  702 (728)
                      |..||++||++. ++++||||+++.+....++.+.
T Consensus       253 L~~dp~~R~~~~~~i~~hp~f~~~~w~~l~~~~~~  287 (345)
T 1xjd_A          253 FVREPEKRLGVRGDIRQHPLFREINWEELERKEID  287 (345)
T ss_dssp             SCSSGGGSBTTBSCGGGSGGGTTCCHHHHHTTCSC
T ss_pred             hcCCHhHcCCChHHHHcCccccCCCHHHHhhCCCC
Confidence            999999999998 9999999999987655544433

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.9e-45  Score=405.30  Aligned_cols=274  Identities=23%  Similarity=0.301  Sum_probs=225.8

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+++|++.+.||+|+||.||+|++..+++.||||++...     .....+.+|+.+++.++|+| |++++++|......
T Consensus        12 v~~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~-Iv~l~~~~~~~~~~   90 (384)
T 4fr4_A           12 VNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPF-LVNLWYSFQDEEDM   90 (384)
T ss_dssp             CCGGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSEE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEeCCEE
Confidence            4568999999999999999999999999999999998642     33466889999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |+||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||++...... 
T Consensus        91 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~-~~g~vkL~DFG~a~~~~~~-  168 (384)
T 4fr4_A           91 FMVVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLD-EHGHVHITDFNIAAMLPRE-  168 (384)
T ss_dssp             EEEECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTSCEEECCCTTCEECCTT-
T ss_pred             EEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEC-CCCCEEEeccceeeeccCC-
Confidence            99999999998877664   389999999999999999999999999999999999999 6678999999999752100 


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (384)
T 4fr4_A          169 --------------------------------------------------------------------------------  168 (384)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (384)
T 4fr4_A          169 --------------------------------------------------------------------------------  168 (384)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhc--cCCCCCchhHHHHHHHHHHHhc
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFR--SQHQGPKLDIWSAGVTLLYLMI  587 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~--~~~~~~~~DIWSlG~il~eLlt  587 (728)
                                                          ......+||+.|+|||++.+  ...++.++|||||||++|+|++
T Consensus       169 ------------------------------------~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~ellt  212 (384)
T 4fr4_A          169 ------------------------------------TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLR  212 (384)
T ss_dssp             ------------------------------------CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHh
Confidence                                                00124569999999999964  2346899999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHH
Q 004835          588 GRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK  667 (728)
Q Consensus       588 G~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~  667 (728)
                      |..||.+........++..                                       +......++..++..+.+||.+
T Consensus       213 G~~Pf~~~~~~~~~~~~~~---------------------------------------~~~~~~~~p~~~s~~~~~li~~  253 (384)
T 4fr4_A          213 GRRPYHIRSSTSSKEIVHT---------------------------------------FETTVVTYPSAWSQEMVSLLKK  253 (384)
T ss_dssp             SSCSSCCCTTSCHHHHHHH---------------------------------------HHHCCCCCCTTSCHHHHHHHHH
T ss_pred             CCCCCCCCCCccHHHHHHH---------------------------------------HhhcccCCCCcCCHHHHHHHHH
Confidence            9999986543222222210                                       1112233445678999999999


Q ss_pred             hcccCCCCCCC-HHHHhcCCCCccchhcchHhHhhhcccccCC
Q 004835          668 CLTVNPRLRIS-AEDALKHEFFAPCHEMLRKQKLLRQGSSIDN  709 (728)
Q Consensus       668 ~L~~dP~~Rpt-a~e~L~Hp~f~~~~~~~~~~~~~~~~~~~~~  709 (728)
                      ||..||.+||+ ++++++||||+++.+....++.+.+...+..
T Consensus       254 lL~~dP~~R~s~~~~l~~hp~f~~~~w~~~~~~~~~p~~~p~~  296 (384)
T 4fr4_A          254 LLEPNPDQRFSQLSDVQNFPYMNDINWDAVFQKRLIPGFIPNK  296 (384)
T ss_dssp             HSCSSGGGSCCSHHHHHTSGGGTTCCHHHHHTTCSCCCCCCSC
T ss_pred             HhcCCHhHhcccHHHHHcChhhhcCCHHHHHhCCCCCCCCCCC
Confidence            99999999998 9999999999999988877777766665543

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.5e-45  Score=393.14  Aligned_cols=286  Identities=27%  Similarity=0.442  Sum_probs=207.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .++|++.+.||+|+||.||+|.+..+|+.||||++....   ....+.+|+.++++++|+| |+++++++..++..|+||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~lv~   82 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHEN-IVRLYDVIHTENKLTLVF   82 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTT-BCCEEEEECCTTEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCC-cceEEEEEEECCeEEEEE
Confidence            468999999999999999999999999999999986432   3456889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh--------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          277 EHVKHDRPEVLKK--------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       277 E~~~~~~l~~l~~--------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      ||+.+++...+..        .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++......
T Consensus        83 e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~-~~~~~kl~Dfg~~~~~~~~  161 (317)
T 2pmi_A           83 EFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLIN-KRGQLKLGDFGLARAFGIP  161 (317)
T ss_dssp             ECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTCCEEECCCSSCEETTSC
T ss_pred             EecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEc-CCCCEEECcCccceecCCC
Confidence            9999755544432        378899999999999999999999999999999999999 6678999999998742100


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                      .                                                                               
T Consensus       162 ~-------------------------------------------------------------------------------  162 (317)
T 2pmi_A          162 V-------------------------------------------------------------------------------  162 (317)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (317)
T 2pmi_A          163 --------------------------------------------------------------------------------  162 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                           ......+||+.|+|||++.+...++.++|||||||++|+|++|
T Consensus       163 -------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g  205 (317)
T 2pmi_A          163 -------------------------------------NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITG  205 (317)
T ss_dssp             -------------------------------------CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhC
Confidence                                                 0011346899999999997766679999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHHHhCCch--HHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHH
Q 004835          589 RTPFFGDPE-QNIKDIAKLRGSED--LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLV  665 (728)
Q Consensus       589 ~~PF~~~~~-~~l~~i~~~~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi  665 (728)
                      +.||.+.+. +.+..++...|.+.  .|....  . ...|..   .....+...+..+.     .+.....++..+.+||
T Consensus       206 ~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~-~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~li  274 (317)
T 2pmi_A          206 KPLFPGTNDEEQLKLIFDIMGTPNESLWPSVT--K-LPKYNP---NIQQRPPRDLRQVL-----QPHTKEPLDGNLMDFL  274 (317)
T ss_dssp             SCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGG--G-CTTCCT---TCCCCCCCCSHHHH-----GGGCSSCCCHHHHHHH
T ss_pred             CCCCCCCChHHHHHHHHHHhCCCChhHhhhhh--h-hhhccc---ccccccchhHHHhh-----cccccccCCHHHHHHH
Confidence            999998776 56777777777532  221100  0 000000   00111111121111     1223346789999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          666 DKCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       666 ~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      .+||..||++|||++|+|+||||++....
T Consensus       275 ~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~  303 (317)
T 2pmi_A          275 HGLLQLNPDMRLSAKQALHHPWFAEYYHH  303 (317)
T ss_dssp             HHHSCSSGGGSCCHHHHTTSGGGGGGCC-
T ss_pred             HHHCCCCcccCCCHHHHhCChhhhcccch
Confidence            99999999999999999999999986654

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=3.2e-45  Score=408.28  Aligned_cols=311  Identities=24%  Similarity=0.322  Sum_probs=223.9

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeC-----
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCG-----  269 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~-----  269 (728)
                      ..++|.+.+.||+|+||.||+|++..+|+.||||++....    ...++.+|+.+|+.++|+| |+++++++...     
T Consensus        24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-Iv~l~~~~~~~~~~~~  102 (432)
T 3n9x_A           24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDY-IIRLYDLIIPDDLLKF  102 (432)
T ss_dssp             CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTT-BCCEEEECCCSCTTTC
T ss_pred             ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCC-cceEEEEEecCCCCcC
Confidence            3578999999999999999999999999999999987532    2356889999999999999 99999998766     


Q ss_pred             CeeEEEEeccCCCChHHHhhc--CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccC
Q 004835          270 DSDCFVLEHVKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFD  347 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~  347 (728)
                      ...|+||||+++++...+...  +++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+|+....
T Consensus       103 ~~~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~-~~~~~kL~DFGla~~~~~  181 (432)
T 3n9x_A          103 DELYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLN-QDCSVKVCDFGLARTINS  181 (432)
T ss_dssp             CCEEEEEECCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTCCEEECCCTTCEEC--
T ss_pred             CeEEEEEecCCcCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEEC-CCCCEEEccCCCcccccc
Confidence            578999999997555555432  89999999999999999999999999999999999999 667899999999986321


Q ss_pred             CCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccc
Q 004835          348 GSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAK  427 (728)
Q Consensus       348 ~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~  427 (728)
                      .......                                                  .++.....               
T Consensus       182 ~~~~~~~--------------------------------------------------~~~~~~~~---------------  196 (432)
T 3n9x_A          182 EKDTNIV--------------------------------------------------NDLEENEE---------------  196 (432)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccc--------------------------------------------------cccccccc---------------
Confidence            1100000                                                  00000000               


Q ss_pred             cccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCC
Q 004835          428 EATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAG  507 (728)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (728)
                                                      ..+                                             
T Consensus       197 --------------------------------~~~---------------------------------------------  199 (432)
T 3n9x_A          197 --------------------------------PGP---------------------------------------------  199 (432)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------ccc---------------------------------------------
Confidence                                            000                                             


Q ss_pred             CCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhc
Q 004835          508 LMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI  587 (728)
Q Consensus       508 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLlt  587 (728)
                                                      .........+..+||++|+|||++.....++.++||||||||+|||++
T Consensus       200 --------------------------------~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~  247 (432)
T 3n9x_A          200 --------------------------------HNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLN  247 (432)
T ss_dssp             -------------------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHT
T ss_pred             --------------------------------cccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHh
Confidence                                            000011223467899999999998777778999999999999999998


Q ss_pred             -----------CCCCCCCCC------------------hHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCC
Q 004835          588 -----------GRTPFFGDP------------------EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPI  638 (728)
Q Consensus       588 -----------G~~PF~~~~------------------~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  638 (728)
                                 |.++|.+.+                  .+++..|+..+|.+....+..+....     ........+..
T Consensus       248 g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~-----~~~~~~~~~~~  322 (432)
T 3n9x_A          248 MLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPE-----VIKYIKLFPHR  322 (432)
T ss_dssp             TCTTTCSSGGGCCCSCCCSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHH-----HHHHHHTSCCC
T ss_pred             cccccccccccccccCCCccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHH-----HHHHHHhCCCC
Confidence                       445555543                  46788999999987765544322100     00000011111


Q ss_pred             CchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhcchH
Q 004835          639 NLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~  697 (728)
                      ....+..       ....+++.+.+||.+||.+||++||||+|||+||||+++++....
T Consensus       323 ~~~~~~~-------~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~~~e  374 (432)
T 3n9x_A          323 KPINLKQ-------KYPSISDDGINLLESMLKFNPNKRITIDQALDHPYLKDVRKKKLE  374 (432)
T ss_dssp             CCCCHHH-------HSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTCGGGTTTCCTTTC
T ss_pred             CCCCHHH-------HCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcChhhhhccCcccC
Confidence            1111111       124578999999999999999999999999999999999876443

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=3.3e-45  Score=387.28  Aligned_cols=257  Identities=26%  Similarity=0.394  Sum_probs=213.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      .++|++.+.||+|+||+||+|++..+|+.||||++...  ...+.+.+|+.+++.++|+| |+++++++..++..|+|||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~lv~e   97 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN-IVNYLDSYLVGDELWVVME   97 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTT-BCCEEEEEEETTEEEEEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCC-CCeEeEEEEECCEEEEEEE
Confidence            35899999999999999999999999999999997643  34566889999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhhc--CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccC
Q 004835          278 HVKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATL  355 (728)
Q Consensus       278 ~~~~~~l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~  355 (728)
                      |+.++++..+...  +++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++.......      
T Consensus        98 ~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~~------  170 (297)
T 3fxz_A           98 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLG-MDGSVKLTDFGFCAQITPEQ------  170 (297)
T ss_dssp             CCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTCCEEECCCTTCEECCSTT------
T ss_pred             CCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEC-CCCCEEEeeCCCceecCCcc------
Confidence            9999998877643  89999999999999999999999999999999999999 66789999999987421000      


Q ss_pred             CCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCc
Q 004835          356 PGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTP  435 (728)
Q Consensus       356 ~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (728)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (297)
T 3fxz_A          171 --------------------------------------------------------------------------------  170 (297)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCC
Q 004835          436 AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSD  515 (728)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  515 (728)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (297)
T 3fxz_A          171 --------------------------------------------------------------------------------  170 (297)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 004835          516 LSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD  595 (728)
Q Consensus       516 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~  595 (728)
                                                    ......+||+.|+|||++.+.. ++.++|||||||++|+|++|..||.+.
T Consensus       171 ------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~ell~g~~pf~~~  219 (297)
T 3fxz_A          171 ------------------------------SKRSTMVGTPYWMAPEVVTRKA-YGPKVDIWSLGIMAIEMIEGEPPYLNE  219 (297)
T ss_dssp             ------------------------------CCBCCCCSCGGGCCHHHHHCSC-BCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ------------------------------cccCCccCCcCccChhhhcCCC-CCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                                          0011346899999999996654 699999999999999999999999887


Q ss_pred             ChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCC
Q 004835          596 PEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL  675 (728)
Q Consensus       596 ~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~  675 (728)
                      ........+...+.                                       .....+..++..+.+||.+||..||++
T Consensus       220 ~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~li~~~l~~dp~~  260 (297)
T 3fxz_A          220 NPLRALYLIATNGT---------------------------------------PELQNPEKLSAIFRDFLNRCLEMDVEK  260 (297)
T ss_dssp             CHHHHHHHHHHHCS---------------------------------------CCCSCGGGSCHHHHHHHHHHSCSSTTT
T ss_pred             CHHHHHHHHHhCCC---------------------------------------CCCCCccccCHHHHHHHHHHccCChhH
Confidence            66433222211110                                       011223567889999999999999999


Q ss_pred             CCCHHHHhcCCCCccchhc
Q 004835          676 RISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       676 Rpta~e~L~Hp~f~~~~~~  694 (728)
                      |||++|+|+||||+.....
T Consensus       261 Rps~~ell~h~~~~~~~~~  279 (297)
T 3fxz_A          261 RGSAKELLQHQFLKIAKPL  279 (297)
T ss_dssp             SCCHHHHTTCGGGGGCCCG
T ss_pred             CcCHHHHhhChhhcccCcc
Confidence            9999999999999976543

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.8e-45  Score=407.06  Aligned_cols=277  Identities=21%  Similarity=0.324  Sum_probs=220.2

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCee
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .+++|+++++||+|+||.||+|++..+++.||||++.+.     .....+.+|..++.++ +|++ |++++++|......
T Consensus        50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~-Iv~l~~~~~~~~~~  128 (396)
T 4dc2_A           50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPF-LVGLHSCFQTESRL  128 (396)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTT-BCCEEEEEECSSEE
T ss_pred             ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCC-cCeeEEEEEECCEE
Confidence            467899999999999999999999999999999998743     2234578899999887 6887 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |+||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+|+..... 
T Consensus       129 ~lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~-~~g~ikL~DFGla~~~~~~-  206 (396)
T 4dc2_A          129 FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLD-SEGHIKLTDYGMCKEGLRP-  206 (396)
T ss_dssp             EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEEC-TTSCEEECCCTTCBCCCCT-
T ss_pred             EEEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEC-CCCCEEEeecceeeecccC-
Confidence            99999999998876653   489999999999999999999999999999999999999 6678999999999741000 


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (396)
T 4dc2_A          207 --------------------------------------------------------------------------------  206 (396)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (396)
T 4dc2_A          207 --------------------------------------------------------------------------------  206 (396)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                         .......+||+.|+|||++.+.. ++.++|||||||++|||++|+
T Consensus       207 -----------------------------------~~~~~~~~gt~~Y~aPE~l~~~~-~~~~~DiwslGvllyell~G~  250 (396)
T 4dc2_A          207 -----------------------------------GDTTSTFCGTPNYIAPEILRGED-YGFSVDWWALGVLMFEMMAGR  250 (396)
T ss_dssp             -----------------------------------TCCBCCCCBCGGGCCHHHHTTCC-BCTHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------------------------CCccccccCCcccCCchhhcCCC-CChHHHHHHHHHHHHHHHhCC
Confidence                                               00112457999999999996654 699999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          590 TPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       590 ~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      +||.+........     ....                            ...+..+......++..++.++.+||.+||
T Consensus       251 ~Pf~~~~~~~~~~-----~~~~----------------------------~~~~~~i~~~~~~~p~~~s~~~~~li~~lL  297 (396)
T 4dc2_A          251 SPFDIVGSSDNPD-----QNTE----------------------------DYLFQVILEKQIRIPRSLSVKAASVLKSFL  297 (396)
T ss_dssp             CSSTTTTC-----------CCH----------------------------HHHHHHHHHCCCCCCTTSCHHHHHHHHHHT
T ss_pred             CCCcccccccccc-----hhhH----------------------------HHHHHHHhccccCCCCcCCHHHHHHHHHHh
Confidence            9996532110000     0000                            000112223344566778999999999999


Q ss_pred             ccCCCCCCCH------HHHhcCCCCccchhcchHhHhhhccccc
Q 004835          670 TVNPRLRISA------EDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       670 ~~dP~~Rpta------~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      ..||.+||++      +|+++||||+++.+....++.+.+...+
T Consensus       298 ~~dP~~R~~~~~~~~~~ei~~Hpff~~i~w~~l~~~~~~pp~~p  341 (396)
T 4dc2_A          298 NKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKP  341 (396)
T ss_dssp             CSCTTTSTTCSTTTHHHHHHHSTTTTTCCHHHHHTTCSCCSCCC
T ss_pred             cCCHhHcCCCCCCCCHHHHhcCccccCCCHHHHHcCCCCCCCcC
Confidence            9999999985      7999999999999887776666555444

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=2.5e-45  Score=400.77  Aligned_cols=256  Identities=26%  Similarity=0.374  Sum_probs=212.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--------chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      +.|++.+.||+|+||.||+|++..+|+.||+|++....        ..+.+.+|+.++..+.|+| |++++++|......
T Consensus        12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~l~~~~~~~~~~   90 (361)
T 2yab_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPN-IITLHDVYENRTDV   90 (361)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEE
T ss_pred             hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcC-CCcEEEEEEeCCEE
Confidence            57999999999999999999999999999999987532        2356889999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC---ceEEEeeecccccc
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV---KGYLIDFNLAMVGF  346 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~---~~kL~DFGlA~~~~  346 (728)
                      |+||||+.++.+..+..   .+++..+..++.||+.||.|||++||+||||||+|||++.++.   .+||+|||++....
T Consensus        91 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~  170 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE  170 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECC
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcC
Confidence            99999999988877653   3899999999999999999999999999999999999984443   79999999997521


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ..                                                                              
T Consensus       171 ~~------------------------------------------------------------------------------  172 (361)
T 2yab_A          171 DG------------------------------------------------------------------------------  172 (361)
T ss_dssp             TT------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (361)
T 2yab_A          173 --------------------------------------------------------------------------------  172 (361)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                             ......+||+.|+|||++.+. .++.++|||||||++|+|+
T Consensus       173 ---------------------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslGvil~~ll  212 (361)
T 2yab_A          173 ---------------------------------------VEFKNIFGTPEFVAPEIVNYE-PLGLEADMWSIGVITYILL  212 (361)
T ss_dssp             ---------------------------------------CCCCCCCSCGGGCCHHHHTTC-CCCTHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------CccccCCCCccEECchHHcCC-CCCccccHHHHHHHHHHHH
Confidence                                                   001134699999999999554 4699999999999999999


Q ss_pred             cCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          587 IGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       587 tG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      +|.+||.+.+...+...+..              ....|+                        ..++..++..+.+||.
T Consensus       213 ~g~~Pf~~~~~~~~~~~i~~--------------~~~~~~------------------------~~~~~~~s~~~~~li~  254 (361)
T 2yab_A          213 SGASPFLGDTKQETLANITA--------------VSYDFD------------------------EEFFSQTSELAKDFIR  254 (361)
T ss_dssp             HSCCSSCCSSHHHHHHHHHT--------------TCCCCC------------------------HHHHTTSCHHHHHHHH
T ss_pred             hCCCCCCCCCHHHHHHHHHh--------------cCCCCC------------------------chhccCCCHHHHHHHH
Confidence            99999998877554332210              011111                        1223567899999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccchh
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      +||..||++|||+.|+|+||||+++.+
T Consensus       255 ~~L~~dP~~R~t~~e~l~hp~~~~~~~  281 (361)
T 2yab_A          255 KLLVKETRKRLTIQEALRHPWITPVDT  281 (361)
T ss_dssp             HHSCSSTTTSCCHHHHHTSTTTSCSSH
T ss_pred             HHCCCChhHCcCHHHHhcCcCcCCCch
Confidence            999999999999999999999997653

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=3.1e-45  Score=398.90  Aligned_cols=269  Identities=21%  Similarity=0.310  Sum_probs=220.4

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|++.+.||+|+||.||+|++..+|+.||||++...     .....+.+|..++..+.++++|+++++++...+..|
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            467999999999999999999999999999999998743     344567889999998844444999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+++...... 
T Consensus        98 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~-~~g~vkL~DFG~a~~~~~~~-  175 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLD-SEGHIKIADFGMCKENIWDG-  175 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEEC-TTSCEEECCCTTCBCCCCTT-
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEc-CCCcEEEEeCCcccccccCC-
Confidence            9999999988876653   489999999999999999999999999999999999999 66789999999986410000 


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (353)
T 2i0e_A          176 --------------------------------------------------------------------------------  175 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (353)
T 2i0e_A          176 --------------------------------------------------------------------------------  175 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                         ......+||+.|+|||++.+.. ++.++|||||||++|||++|++
T Consensus       176 -----------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~ell~G~~  219 (353)
T 2i0e_A          176 -----------------------------------VTTKTFCGTPDYIAPEIIAYQP-YGKSVDWWAFGVLLYEMLAGQA  219 (353)
T ss_dssp             -----------------------------------CCBCCCCSCGGGCCHHHHTTCC-BSTHHHHHHHHHHHHHHHHSSC
T ss_pred             -----------------------------------cccccccCCccccChhhhcCCC-cCCcccccchHHHHHHHHcCCC
Confidence                                               0011456999999999996554 6999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.+...+...+.                                          .....++..++.++.+||.+||.
T Consensus       220 Pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~~li~~lL~  257 (353)
T 2i0e_A          220 PFEGEDEDELFQSIM------------------------------------------EHNVAYPKSMSKEAVAICKGLMT  257 (353)
T ss_dssp             SSCCSSHHHHHHHHH------------------------------------------HCCCCCCTTSCHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHH------------------------------------------hCCCCCCCCCCHHHHHHHHHHhh
Confidence            999877655443221                                          11233445678999999999999


Q ss_pred             cCCCCCCC-----HHHHhcCCCCccchhcchHhHhhhccccc
Q 004835          671 VNPRLRIS-----AEDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       671 ~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      .||.+||+     ++++++||||+.+.+....++.+.+...+
T Consensus       258 ~dP~~R~~~~~~~~~~i~~h~~f~~~~w~~l~~~~~~~p~~p  299 (353)
T 2i0e_A          258 KHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKP  299 (353)
T ss_dssp             SCTTSCTTCSTTHHHHHHTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred             cCHHHcCCCCCCCHHHHhcCccccCCCHHHHHhCCCCCCcCC
Confidence            99999994     79999999999998876665555544433

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=4.6e-45  Score=396.77  Aligned_cols=265  Identities=23%  Similarity=0.303  Sum_probs=223.1

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+++|++++.||+|+||.||+|++..+|+.||||++...     .....+.+|+.++..++|++ |+++++++......
T Consensus        38 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~  116 (350)
T 1rdq_E           38 AQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPF-LVKLEFSFKDNSNL  116 (350)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEE
T ss_pred             CCHHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEEcCCEE
Confidence            3467999999999999999999999999999999998643     34456889999999999998 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |+||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+++....  
T Consensus       117 ~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~-~~g~~kL~DFg~a~~~~~--  193 (350)
T 1rdq_E          117 YMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLID-QQGYIQVTDFGFAKRVKG--  193 (350)
T ss_dssp             EEEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTSCEEECCCTTCEECSS--
T ss_pred             EEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEEC-CCCCEEEcccccceeccC--
Confidence            99999999988876653   489999999999999999999999999999999999999 667899999999874110  


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (350)
T 1rdq_E          194 --------------------------------------------------------------------------------  193 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (350)
T 1rdq_E          194 --------------------------------------------------------------------------------  193 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                           .....+||+.|+|||++.+.. ++.++|||||||++|+|++|.
T Consensus       194 -------------------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~ell~g~  235 (350)
T 1rdq_E          194 -------------------------------------RTWTLCGTPEALAPEIILSKG-YNKAVDWWALGVLIYEMAAGY  235 (350)
T ss_dssp             -------------------------------------CBCCCEECGGGCCHHHHTTCC-BCTHHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------CcccccCCccccCHHHhcCCC-CCCcCCEecccHhHhHHhhCC
Confidence                                                 001346899999999996654 699999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          590 TPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       590 ~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      +||.+.+...+...+.                                          .....++..++..+.+||.+||
T Consensus       236 ~Pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~~~~~~~li~~lL  273 (350)
T 1rdq_E          236 PPFFADQPIQIYEKIV------------------------------------------SGKVRFPSHFSSDLKDLLRNLL  273 (350)
T ss_dssp             CSSCCSSHHHHHHHHH------------------------------------------HCCCCCCTTCCHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHH------------------------------------------cCCCCCCCCCCHHHHHHHHHHh
Confidence            9999877655433221                                          1122344567899999999999


Q ss_pred             ccCCCCCCC-----HHHHhcCCCCccchhcchHhHhhhcccc
Q 004835          670 TVNPRLRIS-----AEDALKHEFFAPCHEMLRKQKLLRQGSS  706 (728)
Q Consensus       670 ~~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~~~~~~  706 (728)
                      ..||.+||+     ++++++||||+++.+....++.+.+...
T Consensus       274 ~~dp~~R~~~~~~~~~ei~~h~~f~~~~w~~~~~~~~~~p~~  315 (350)
T 1rdq_E          274 QVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFI  315 (350)
T ss_dssp             CSCTTTCTTSSTTTTHHHHTSGGGTTCCHHHHHTTCSCCSCC
T ss_pred             hcCHHhccCCccCCHHHHHhCcCcCCCCHHHHhhccCCCCCC
Confidence            999999998     9999999999999987766665554443

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=5.3e-45  Score=395.29  Aligned_cols=274  Identities=22%  Similarity=0.333  Sum_probs=216.2

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhc-CCCCceEEecceEEeCCee
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .+++|++.+.||+|+||.||+|++..+|+.||||++....     ....+.+|+.++.++ +|++ |+++++++......
T Consensus         7 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~-iv~l~~~~~~~~~~   85 (345)
T 3a8x_A            7 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPF-LVGLHSCFQTESRL   85 (345)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTT-BCCEEEEEECSSEE
T ss_pred             chhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCc-cCeEEEEEEeCCEE
Confidence            4678999999999999999999999999999999987542     234577899999988 7887 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |+||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+++..... 
T Consensus        86 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~-~~g~~kL~DFG~a~~~~~~-  163 (345)
T 3a8x_A           86 FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLD-SEGHIKLTDYGMCKEGLRP-  163 (345)
T ss_dssp             EEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEEC-TTSCEEECCGGGCBCSCCT-
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEC-CCCCEEEEeccccccccCC-
Confidence            99999999988876653   489999999999999999999999999999999999999 6678999999998741000 


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (345)
T 3a8x_A          164 --------------------------------------------------------------------------------  163 (345)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (345)
T 3a8x_A          164 --------------------------------------------------------------------------------  163 (345)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                         .......+||+.|+|||++.+.. ++.++|||||||++|||++|+
T Consensus       164 -----------------------------------~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~ell~g~  207 (345)
T 3a8x_A          164 -----------------------------------GDTTSTFCGTPNYIAPEILRGED-YGFSVDWWALGVLMFEMMAGR  207 (345)
T ss_dssp             -----------------------------------TCCBCCCCSCGGGCCHHHHTTCC-BCTHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------------------------CCcccccCCCccccCccccCCCC-CChHHhHHHHHHHHHHHHhCC
Confidence                                               00012456999999999996654 699999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          590 TPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       590 ~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      .||..........     ....                            ...+..+......++..++..+.+||.+||
T Consensus       208 ~pf~~~~~~~~~~-----~~~~----------------------------~~~~~~i~~~~~~~p~~~s~~~~~li~~lL  254 (345)
T 3a8x_A          208 SPFDIVGSSDNPD-----QNTE----------------------------DYLFQVILEKQIRIPRSLSVKAASVLKSFL  254 (345)
T ss_dssp             CTTTTTTC------------CH----------------------------HHHHHHHHHCCCCCCTTSCHHHHHHHHHHT
T ss_pred             CCcCCcccccccc-----cccH----------------------------HHHHHHHHcCCCCCCCCCCHHHHHHHHHHh
Confidence            9996521100000     0000                            000111122334455678899999999999


Q ss_pred             ccCCCCCCCH------HHHhcCCCCccchhcchHhHhhhcc
Q 004835          670 TVNPRLRISA------EDALKHEFFAPCHEMLRKQKLLRQG  704 (728)
Q Consensus       670 ~~dP~~Rpta------~e~L~Hp~f~~~~~~~~~~~~~~~~  704 (728)
                      ..||.+||++      +|+++||||+++.+....++.+.+.
T Consensus       255 ~~dP~~R~~~~~~~~~~~i~~hp~f~~~~w~~~~~~~~~~p  295 (345)
T 3a8x_A          255 NKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPP  295 (345)
T ss_dssp             CSSTTTSTTCCTTTHHHHHHTSGGGTTCCHHHHHTTCSCCS
T ss_pred             cCCHhHCCCCCCcCCHHHHhcCCccCCCCHHHHHhCCCCCC
Confidence            9999999995      8999999999998766555544443

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=7.9e-45  Score=384.02  Aligned_cols=288  Identities=24%  Similarity=0.371  Sum_probs=217.4

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      +++|++.+.||+|+||+||+|++..+|+.||||++.....    ...+.+|+.++.+++|+| |+++++++...+..++|
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~lv   80 (311)
T 4agu_A            2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPN-LVNLLEVFRRKRRLHLV   80 (311)
T ss_dssp             -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTT-BCCEEEEEEETTEEEEE
T ss_pred             cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCC-ccchhheeecCCeEEEE
Confidence            4689999999999999999999999999999998865433    345778999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |||+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++.......   
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~~---  156 (311)
T 4agu_A           81 FEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILIT-KHSVIKLCDFGFARLLTGPS---  156 (311)
T ss_dssp             EECCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTSCEEECCCTTCEECC------
T ss_pred             EEeCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEc-CCCCEEEeeCCCchhccCcc---
Confidence            99999998877754   389999999999999999999999999999999999999 66789999999997521000   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (311)
T 4agu_A          157 --------------------------------------------------------------------------------  156 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (311)
T 4agu_A          157 --------------------------------------------------------------------------------  156 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                       ......+||+.|+|||++.+...++.++|||||||++|+|++|..||
T Consensus       157 ---------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~  203 (311)
T 4agu_A          157 ---------------------------------DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLW  203 (311)
T ss_dssp             ------------------------------------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ---------------------------------cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCC
Confidence                                             00113358999999999977667799999999999999999999999


Q ss_pred             CCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCC-chhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          593 FGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPIN-LPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       593 ~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      .+... +.+..+.+..|............. ..+     ....++... ...+.       .....++..+.+||.+||.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~L~  270 (311)
T 4agu_A          204 PGKSDVDQLYLIRKTLGDLIPRHQQVFSTN-QYF-----SGVKIPDPEDMEPLE-------LKFPNISYPALGLLKGCLH  270 (311)
T ss_dssp             CCSSHHHHHHHHHHHHCSCCHHHHHHHHTC-GGG-----TTCCCCCCSSCCCHH-------HHCTTCCHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHhcccccccccccccc-ccc-----ccCcCCCccccchhh-------hhcccccHHHHHHHHHHcc
Confidence            98776 456666666675322221111100 000     000011000 00000       0124578899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccchhcchHh
Q 004835          671 VNPRLRISAEDALKHEFFAPCHEMLRKQ  698 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~~~~~~~  698 (728)
                      +||++|||++|+|+||||+++.+.....
T Consensus       271 ~dP~~Rpt~~ell~hp~f~~~~~~~~~~  298 (311)
T 4agu_A          271 MDPTERLTCEQLLHHPYFENIREIEDLA  298 (311)
T ss_dssp             SSTTTSCCHHHHHTSGGGTTCC------
T ss_pred             CChhhcCCHHHHhcChHHHhccCHHHHH
Confidence            9999999999999999999987665443

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=3.3e-45  Score=406.76  Aligned_cols=276  Identities=23%  Similarity=0.285  Sum_probs=222.7

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC-----cCchhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA-----NASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~-----~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      +....++|++.++||+|+||+||+|++..+++.||||++..     ......+.+|+.++..++|++ |++++++|.+..
T Consensus        64 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~-Iv~l~~~~~~~~  142 (410)
T 3v8s_A           64 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW-VVQLFYAFQDDR  142 (410)
T ss_dssp             HSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTT-BCCEEEEEECSS
T ss_pred             cccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCC-CCeEEEEEEECC
Confidence            34456799999999999999999999999999999999864     233455789999999999999 999999999999


Q ss_pred             eeEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          271 SDCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      ..|+||||+.++.+..+.+  .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+|+.....
T Consensus       143 ~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~-~~g~ikL~DFG~a~~~~~~  221 (410)
T 3v8s_A          143 YLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLD-KSGHLKLADFGTCMKMNKE  221 (410)
T ss_dssp             EEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTSCEEECCCTTCEECCTT
T ss_pred             EEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeEC-CCCCEEEeccceeEeeccC
Confidence            9999999999998877664  389999999999999999999999999999999999999 6678999999999752110


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                      ..                                                                              
T Consensus       222 ~~------------------------------------------------------------------------------  223 (410)
T 3v8s_A          222 GM------------------------------------------------------------------------------  223 (410)
T ss_dssp             SE------------------------------------------------------------------------------
T ss_pred             Cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       224 --------------------------------------------------------------------------------  223 (410)
T 3v8s_A          224 --------------------------------------------------------------------------------  223 (410)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCC---CCCchhHHHHHHHHHHH
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQH---QGPKLDIWSAGVTLLYL  585 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~---~~~~~DIWSlG~il~eL  585 (728)
                                                           ......+||+.|+|||++.+...   ++.++|||||||++|||
T Consensus       224 -------------------------------------~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyel  266 (410)
T 3v8s_A          224 -------------------------------------VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEM  266 (410)
T ss_dssp             -------------------------------------EECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHH
T ss_pred             -------------------------------------ccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHH
Confidence                                                 00113469999999999965442   68899999999999999


Q ss_pred             hcCCCCCCCCChHHHHH-HHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHH
Q 004835          586 MIGRTPFFGDPEQNIKD-IAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL  664 (728)
Q Consensus       586 ltG~~PF~~~~~~~l~~-i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dL  664 (728)
                      ++|++||.+.+...+.. |+....             ...||                          ....++.++.+|
T Consensus       267 l~G~~Pf~~~~~~~~~~~i~~~~~-------------~~~~p--------------------------~~~~~s~~~~~l  307 (410)
T 3v8s_A          267 LVGDTPFYADSLVGTYSKIMNHKN-------------SLTFP--------------------------DDNDISKEAKNL  307 (410)
T ss_dssp             HHSSCTTCCSSHHHHHHHHHTHHH-------------HCCCC--------------------------TTCCCCHHHHHH
T ss_pred             HhCCCCCCCCChhhHHHHHHhccc-------------cccCC--------------------------CcccccHHHHHH
Confidence            99999999887654433 321000             00011                          113578999999


Q ss_pred             HHHhcccCCCC--CCCHHHHhcCCCCccchhcchHhHhhhccccc
Q 004835          665 VDKCLTVNPRL--RISAEDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       665 i~~~L~~dP~~--Rpta~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      |.+||+.+|.+  |++++|+++||||+++.+.....+.+.+...+
T Consensus       308 i~~lL~~~~~rlgR~~~~ei~~Hp~f~~~~w~~~~~~~~~~p~~p  352 (410)
T 3v8s_A          308 ICAFLTDREVRLGRNGVEEIKRHLFFKNDQWAWETLRDTVAPVVP  352 (410)
T ss_dssp             HHHHSSCGGGCTTSSCHHHHHTSGGGCCSSCCSTTGGGSCCSCCC
T ss_pred             HHHHccChhhhCCCCCHHHHhcCccccCCCHHHHhhcccCCCCCC
Confidence            99999999988  99999999999999998765555555444433

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=2.9e-46  Score=398.96  Aligned_cols=140  Identities=21%  Similarity=0.307  Sum_probs=121.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhH-HHHHHHHHHhcCCCCceEEecceEEeCC----eeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHY-VSNELRMLERFGGKNFIIKYEGCFKCGD----SDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~-~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~----~~~LV  275 (728)
                      .+|.+.++||+|+||+||+|++  +|+.||||++........ ...|+..+.+++||| |+++++++...+    .+|||
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpN-Iv~l~g~~~~~~~~~~~~~lV   79 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREERSWFREAEIYQTVMLRHEN-ILGFIAADNKDNGTWTQLWLV   79 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE--TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTT-BCCEEEEEEEECSSSEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccchhhHHHHHHHHHHhcCCCCC-CCcEEEEEEecCCCceEEEEE
Confidence            3689999999999999999998  689999999976543322 345666677899999 999999987654    57999


Q ss_pred             EeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhC--------CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQ--------GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~--------gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+++|+|..+++  .+++..+..++.|++.||+|||++        +||||||||+||||+ .++.+||+|||+|+.
T Consensus        80 ~Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~-~~~~~Ki~DFGla~~  157 (303)
T 3hmm_A           80 SDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVK-KNGTCCIADLGLAVR  157 (303)
T ss_dssp             EECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEEC-TTSCEEECCCTTCEE
T ss_pred             ecCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEEC-CCCCEEEEeCCCCcc
Confidence            99999999987764  389999999999999999999987        999999999999999 677899999999975

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.1e-45  Score=395.46  Aligned_cols=286  Identities=26%  Similarity=0.382  Sum_probs=217.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +++|.+.+.||+|+||+||+|++..+++.||||++.....   ...+.+|+.+++.++|+| |+++++++...+..|+||
T Consensus         1 l~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~   79 (324)
T 3mtl_A            1 METYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHAN-IVTLHDIIHTEKSLTLVF   79 (324)
T ss_dssp             CCSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTT-BCCEEEEEECSSCEEEEE
T ss_pred             CCceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCC-CCeeeeEEeeCCEEEEEe
Confidence            4689999999999999999999999999999999864322   223457999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      ||+.+++...+..   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++.......    
T Consensus        80 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~-~~~~~kl~Dfg~a~~~~~~~----  154 (324)
T 3mtl_A           80 EYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLIN-ERGELKLADFGLARAKSIPT----  154 (324)
T ss_dssp             ECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEEC-TTCCEEECSSSEEECC--------
T ss_pred             cccccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEEC-CCCCEEEccCcccccccCCc----
Confidence            9999866655543   388999999999999999999999999999999999999 66789999999987411000    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (324)
T 3mtl_A          155 --------------------------------------------------------------------------------  154 (324)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (324)
T 3mtl_A          155 --------------------------------------------------------------------------------  154 (324)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                      ......+||+.|+|||++.+...++.++|||||||++|+|++|+.||.
T Consensus       155 --------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~  202 (324)
T 3mtl_A          155 --------------------------------KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFP  202 (324)
T ss_dssp             ----------------------------------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             --------------------------------cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                                            001133589999999999776678999999999999999999999999


Q ss_pred             CCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          594 GDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       594 ~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      +.+. +.+..+++.+|.+....+.....      .........+......+       ......+++++.+||.+||.+|
T Consensus       203 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~li~~~L~~d  269 (324)
T 3mtl_A          203 GSTVEEQLHFIFRILGTPTEETWPGILS------NEEFKTYNYPKYRAEAL-------LSHAPRLDSDGADLLTKLLQFE  269 (324)
T ss_dssp             CSSHHHHHHHHHHHHCCCCTTTSTTGGG------CHHHHHTCCCCCCCCCH-------HHHCTTSCHHHHHHHHHHSCSS
T ss_pred             CCCHHHHHHHHHHHhCCCChHhchhhhc------chhhcccccccccchhh-------hhhcCCCCHHHHHHHHHHcCcC
Confidence            8776 56777787777543211000000      00000000111111111       1123467889999999999999


Q ss_pred             CCCCCCHHHHhcCCCCccchhcch
Q 004835          673 PRLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      |++|||++|+|+||||.++.+...
T Consensus       270 P~~R~t~~e~l~hp~f~~~~~~~~  293 (324)
T 3mtl_A          270 GRNRISAEDAMKHPFFLSLGERIH  293 (324)
T ss_dssp             GGGSCCHHHHTTSGGGGGGCSTTS
T ss_pred             cccCCCHHHHhcChhhhhcccccc
Confidence            999999999999999998876543

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=4.4e-45  Score=391.44  Aligned_cols=288  Identities=23%  Similarity=0.313  Sum_probs=216.8

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ...+++|++.+.||+|+||+||+|++..+++.||||++.....    ...+.+|+.++++++|+| |+++++++..+...
T Consensus        30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~  108 (329)
T 3gbz_A           30 ATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRN-IIELKSVIHHNHRL  108 (329)
T ss_dssp             --CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTT-BCCEEEEEEETTEE
T ss_pred             ccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCC-cceEEEEEecCCEE
Confidence            3456799999999999999999999999999999999875432    345678999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec----CCCceEEEeeecccccc
Q 004835          273 CFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC----KAVKGYLIDFNLAMVGF  346 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~----~~~~~kL~DFGlA~~~~  346 (728)
                      |+||||+.+++...+..  .+++..++.++.||+.||.|||++||+||||||+||||+.    ....+||+|||++....
T Consensus       109 ~lv~e~~~~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~  188 (329)
T 3gbz_A          109 HLIFEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFG  188 (329)
T ss_dssp             EEEEECCSEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC
T ss_pred             EEEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccC
Confidence            99999999855555543  3899999999999999999999999999999999999962    34459999999997521


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ...                                                                             
T Consensus       189 ~~~-----------------------------------------------------------------------------  191 (329)
T 3gbz_A          189 IPI-----------------------------------------------------------------------------  191 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Ccc-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (329)
T 3gbz_A          192 --------------------------------------------------------------------------------  191 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                             ......+||+.|+|||++.+...++.++|||||||++|+|+
T Consensus       192 ---------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell  232 (329)
T 3gbz_A          192 ---------------------------------------RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEML  232 (329)
T ss_dssp             -----------------------------------------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence                                                   00113458999999999977676899999999999999999


Q ss_pred             cCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHH
Q 004835          587 IGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLV  665 (728)
Q Consensus       587 tG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi  665 (728)
                      +|..||.+... +.+..++...|.+.......... ...|.      ...+......+.      ..+...+++++.+||
T Consensus       233 ~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~------~~~~~~~~~~~~~li  299 (329)
T 3gbz_A          233 MKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTA-LPDWK------QSFPKFRGKTLK------RVLGALLDDEGLDLL  299 (329)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGG-STTCC------TTCCCCCCCCHH------HHHGGGSCHHHHHHH
T ss_pred             HCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhh-hhhhh------hhhhhhccccHh------hhcccccCHHHHHHH
Confidence            99999998776 56777777777543211000000 00000      001111111111      112345789999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          666 DKCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       666 ~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      .+||.+||++|||++|+|+||||+++.+.
T Consensus       300 ~~~L~~dP~~R~t~~e~l~hp~f~~~~~~  328 (329)
T 3gbz_A          300 TAMLEMDPVKRISAKNALEHPYFSHNDFD  328 (329)
T ss_dssp             HHHTCSSGGGSCCHHHHHTSGGGSSSCSC
T ss_pred             HHHccCChhhCCCHHHHhCCcccCCCCCC
Confidence            99999999999999999999999987653

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=1e-44  Score=399.54  Aligned_cols=279  Identities=26%  Similarity=0.432  Sum_probs=222.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCC------eeEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD------SDCF  274 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~------~~~L  274 (728)
                      .+|.+.+.||+|+||+||+|++..+++ ||+|++.....  ...+|+.+++.++|+| |++++++|....      ..|+
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~~--~~~~E~~il~~l~h~n-iv~l~~~~~~~~~~~~~~~~~l  115 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKR--FKNRELQIMRIVKHPN-VVDLKAFFYSNGDKKDEVFLNL  115 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCTT--SCCHHHHHHHTCCCTT-BCCEEEEEEEESSSSSCEEEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCcc--hHHHHHHHHHhCCCCC-cceEEEEEEecCCCCCceEEEE
Confidence            479999999999999999999986665 88887654322  2237999999999999 999999986543      3889


Q ss_pred             EEeccCCCChHHHh------hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          275 VLEHVKHDRPEVLK------KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       275 V~E~~~~~~l~~l~------~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      ||||++++++..+.      ..+++..++.++.||+.||+|||++||+||||||+||||+..++.+||+|||+|+.....
T Consensus       116 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~  195 (394)
T 4e7w_A          116 VLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAG  195 (394)
T ss_dssp             EEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred             EeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCC
Confidence            99999998765543      248899999999999999999999999999999999999866778999999999752100


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                      .                                                                               
T Consensus       196 ~-------------------------------------------------------------------------------  196 (394)
T 4e7w_A          196 E-------------------------------------------------------------------------------  196 (394)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (394)
T 4e7w_A          197 --------------------------------------------------------------------------------  196 (394)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                            .....+||+.|+|||++.+...++.++|||||||++|||++|
T Consensus       197 --------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g  238 (394)
T 4e7w_A          197 --------------------------------------PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQG  238 (394)
T ss_dssp             --------------------------------------CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhC
Confidence                                                  011346899999999998777789999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHH
Q 004835          589 RTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK  667 (728)
Q Consensus       589 ~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~  667 (728)
                      ++||.+.+. +++..+++.+|.+....+........        ...++......|...      +...+++++.+||.+
T Consensus       239 ~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~------~~~~~~~~~~~li~~  304 (394)
T 4e7w_A          239 QPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYM--------EHKFPQIRPHPFSKV------FRPRTPPDAIDLISR  304 (394)
T ss_dssp             SCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGS--------SSCCCCCCCCCHHHH------SCTTCCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhh--------hhccccccCCcHHHh------ccccCCHHHHHHHHH
Confidence            999998776 67899999999877666554432111        112222222333222      334578999999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          668 CLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       668 ~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      ||.+||.+|||+.|+|+||||+++++.
T Consensus       305 ~L~~dP~~R~t~~e~l~hp~f~~~~~~  331 (394)
T 4e7w_A          305 LLEYTPSARLTAIEALCHPFFDELRTG  331 (394)
T ss_dssp             HCCSSGGGSCCHHHHHTSGGGSTTTSS
T ss_pred             HhCCChhhCCCHHHHhcChhhhhhccc
Confidence            999999999999999999999988754

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.7e-45  Score=396.80  Aligned_cols=283  Identities=27%  Similarity=0.411  Sum_probs=215.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCC-----
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD-----  270 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~-----  270 (728)
                      .++|++.+.||+|+||.||+|.+..+|+.||||++....    ....+.+|+.+++.++|+| |+++++++....     
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~l~~~~~~~~~~~~~  102 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHEN-VIGLLDVFTPDETLDDF  102 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTT-BCCCSEEECSCSSTTTC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcC-CCCceeeEecCCccccC
Confidence            468999999999999999999999999999999986432    2356789999999999999 999999997653     


Q ss_pred             -eeEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccC
Q 004835          271 -SDCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFD  347 (728)
Q Consensus       271 -~~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~  347 (728)
                       ..|+||||+ ++++..+.+  .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||+++....
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~-~~~~~kl~Dfg~a~~~~~  180 (367)
T 1cm8_A          103 TDFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVN-EDCELKILDFGLARQADS  180 (367)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTCCEEECCCTTCEECCS
T ss_pred             ceEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEc-CCCCEEEEeeeccccccc
Confidence             469999999 555555543  489999999999999999999999999999999999999 667899999999874100


Q ss_pred             CCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccc
Q 004835          348 GSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAK  427 (728)
Q Consensus       348 ~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~  427 (728)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (367)
T 1cm8_A          181 --------------------------------------------------------------------------------  180 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCC
Q 004835          428 EATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAG  507 (728)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (728)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (367)
T 1cm8_A          181 --------------------------------------------------------------------------------  180 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhc
Q 004835          508 LMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI  587 (728)
Q Consensus       508 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLlt  587 (728)
                                                             ..+..+||++|+|||++.+...++.++|||||||++|||++
T Consensus       181 ---------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~  221 (367)
T 1cm8_A          181 ---------------------------------------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMIT  221 (367)
T ss_dssp             ---------------------------------------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHh
Confidence                                                   01134689999999999876668999999999999999999


Q ss_pred             CCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          588 GRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       588 G~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      |++||.+.+. +++..+++..|.+....+..+....     .......++......|.       .+....++.+.+||.
T Consensus       222 g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ll~  289 (367)
T 1cm8_A          222 GKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDE-----AKNYMKGLPELEKKDFA-------SILTNASPLAVNLLE  289 (367)
T ss_dssp             SSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHH-----HHHHHHHSCCCCCCCGG-------GTCTTCCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHH-----HHHHHHhCCCCCCCCHH-------HHCCCCCHHHHHHHH
Confidence            9999998776 6788899999986544333221100     00000001111111111       223467899999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccchhcch
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      +||.+||++|||++|+|+||||+.+++...
T Consensus       290 ~mL~~dP~~R~t~~e~l~hp~f~~~~~~~~  319 (367)
T 1cm8_A          290 KMLVLDAEQRVTAGEALAHPYFESLHDTED  319 (367)
T ss_dssp             HHSCSSTTTSCCHHHHHHSGGGTTTC----
T ss_pred             HHccCChhHCCCHHHHhcChHHHhhcCCcc
Confidence            999999999999999999999999886543

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=1.2e-44  Score=390.37  Aligned_cols=301  Identities=24%  Similarity=0.330  Sum_probs=223.1

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEe------
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKC------  268 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~------  268 (728)
                      .+++|++.+.||+|+||.||+|++..+|+.||||++....    ....+.+|+.++..++|+| |+++++++..      
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~~   93 (351)
T 3mi9_A           15 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN-VVNLIEICRTKASPYN   93 (351)
T ss_dssp             BGGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTT-BCCEEEEEEEC-----
T ss_pred             cccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCC-cccHhheeeccccccc
Confidence            4579999999999999999999999999999999886432    2446789999999999999 9999999876      


Q ss_pred             --CCeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          269 --GDSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       269 --~~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                        .+..|+||||+.++++..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||++.
T Consensus        94 ~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~-~~~~~kl~Dfg~a~  172 (351)
T 3mi9_A           94 RCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLIT-RDGVLKLADFGLAR  172 (351)
T ss_dssp             ---CEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTSCEEECCCTTCE
T ss_pred             cCCceEEEEEeccCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEc-CCCCEEEccchhcc
Confidence              456899999999877666653   489999999999999999999999999999999999999 66789999999997


Q ss_pred             cccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCc
Q 004835          344 VGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGI  423 (728)
Q Consensus       344 ~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~  423 (728)
                      .......                                                                         
T Consensus       173 ~~~~~~~-------------------------------------------------------------------------  179 (351)
T 3mi9_A          173 AFSLAKN-------------------------------------------------------------------------  179 (351)
T ss_dssp             ECCCCSS-------------------------------------------------------------------------
T ss_pred             ccccccc-------------------------------------------------------------------------
Confidence            5211000                                                                         


Q ss_pred             cccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccc
Q 004835          424 TSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAV  503 (728)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (728)
                                                                                                      
T Consensus       180 --------------------------------------------------------------------------------  179 (351)
T 3mi9_A          180 --------------------------------------------------------------------------------  179 (351)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHH
Q 004835          504 AGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLL  583 (728)
Q Consensus       504 ~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~  583 (728)
                                                             .........+||+.|+|||++.+...++.++|||||||++|
T Consensus       180 ---------------------------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~  220 (351)
T 3mi9_A          180 ---------------------------------------SQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMA  220 (351)
T ss_dssp             ---------------------------------------SSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHH
T ss_pred             ---------------------------------------ccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHH
Confidence                                                   00011124568999999999977666799999999999999


Q ss_pred             HHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHH
Q 004835          584 YLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF  662 (728)
Q Consensus       584 eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (728)
                      +|++|.+||.+... ..+..+....|.............      ....................     .....++.+.
T Consensus       221 ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  289 (351)
T 3mi9_A          221 EMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNY------ELYEKLELVKGQKRKVKDRL-----KAYVRDPYAL  289 (351)
T ss_dssp             HHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGC------GGGTSSCCCSSCCCCHHHHH-----HHHHCCHHHH
T ss_pred             HHHhCCCCCCCCChHHHHHHHHHHhCCCChhhccccccc------hhhcccccccccccCHHHHh-----hhccCChHHH
Confidence            99999999998776 456666666664221000000000      00000000000000000000     0012367899


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCccchhcchHhHhhhcc
Q 004835          663 DLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQG  704 (728)
Q Consensus       663 dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~~~~~~  704 (728)
                      +||.+||.+||++|||++|+|+||||++.+.+.....++...
T Consensus       290 ~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~~~~~~~~~  331 (351)
T 3mi9_A          290 DLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSDLKGMLSTH  331 (351)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHTSGGGGSSSCCCCSHHHHHSS
T ss_pred             HHHHHHhcCChhhCCCHHHHhCCCCcCCCCCccccccccCcc
Confidence            999999999999999999999999999877666555555443

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.9e-44  Score=386.91  Aligned_cols=264  Identities=24%  Similarity=0.344  Sum_probs=209.9

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEc---CCCeEEEEEeccCcC------chhHHHHHHHHHHhcCCCCceEEecceEEe
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRK---NDGTVVAIKCPHANA------SKHYVSNELRMLERFGGKNFIIKYEGCFKC  268 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~---~~g~~VAIK~i~~~~------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~  268 (728)
                      ...++|++.+.||+|+||.||+|++.   .+|+.||||++....      ....+.+|+.+++.++|+| |+++++++..
T Consensus        14 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~   92 (327)
T 3a62_A           14 IRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPF-IVDLIYAFQT   92 (327)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTT-BCCEEEEEEC
T ss_pred             CCHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCC-ccceeEEEEc
Confidence            34578999999999999999999985   689999999987532      2345778999999999999 9999999999


Q ss_pred             CCeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccc
Q 004835          269 GDSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVG  345 (728)
Q Consensus       269 ~~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~  345 (728)
                      .+..|+||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+++..
T Consensus        93 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~-~~~~~kl~Dfg~~~~~  171 (327)
T 3a62_A           93 GGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLN-HQGHVKLTDFGLCKES  171 (327)
T ss_dssp             SSCEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEEC-TTSCEEECCCSCC---
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEEC-CCCcEEEEeCCccccc
Confidence            999999999999988766653   388999999999999999999999999999999999999 6678999999998631


Q ss_pred             cCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccc
Q 004835          346 FDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITS  425 (728)
Q Consensus       346 ~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~  425 (728)
                      ....                                                                            
T Consensus       172 ~~~~----------------------------------------------------------------------------  175 (327)
T 3a62_A          172 IHDG----------------------------------------------------------------------------  175 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCC----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             cccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccccc
Q 004835          426 AKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAG  505 (728)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (728)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (327)
T 3a62_A          176 --------------------------------------------------------------------------------  175 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHH
Q 004835          506 AGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYL  585 (728)
Q Consensus       506 ~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eL  585 (728)
                                                              ......+||+.|+|||++.+.. ++.++|||||||++|+|
T Consensus       176 ----------------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~el  214 (327)
T 3a62_A          176 ----------------------------------------TVTHTFCGTIEYMAPEILMRSG-HNRAVDWWSLGALMYDM  214 (327)
T ss_dssp             -------------------------------------------CTTSSCCTTSCHHHHTTSC-CCTHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------ccccccCCCcCccCHhhCcCCC-CCCcccchhHHHHHHHH
Confidence                                                    0011346899999999996554 69999999999999999


Q ss_pred             hcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHH
Q 004835          586 MIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLV  665 (728)
Q Consensus       586 ltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi  665 (728)
                      ++|+.||.+.+...+...+.                                          .....++..++..+.+||
T Consensus       215 ~~g~~pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~~~~~~~li  252 (327)
T 3a62_A          215 LTGAPPFTGENRKKTIDKIL------------------------------------------KCKLNLPPYLTQEARDLL  252 (327)
T ss_dssp             HHSSCSCCCSSHHHHHHHHH------------------------------------------HTCCCCCTTSCHHHHHHH
T ss_pred             HHCCCCCCCCCHHHHHHHHH------------------------------------------hCCCCCCCCCCHHHHHHH
Confidence            99999998877644332221                                          111233456789999999


Q ss_pred             HHhcccCCCCCC-----CHHHHhcCCCCccchhcchHhHhhh
Q 004835          666 DKCLTVNPRLRI-----SAEDALKHEFFAPCHEMLRKQKLLR  702 (728)
Q Consensus       666 ~~~L~~dP~~Rp-----ta~e~L~Hp~f~~~~~~~~~~~~~~  702 (728)
                      .+||..||++||     +++|+++||||+.+.+....++...
T Consensus       253 ~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~~~~~~~~~~~~~  294 (327)
T 3a62_A          253 KKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVE  294 (327)
T ss_dssp             HHHSCSCGGGSTTSSTTTHHHHHHSGGGSSCCHHHHHTTCSC
T ss_pred             HHHHhcCHhhccCCCCCCHHHHHcCCcccCCCHHHHhhccCC
Confidence            999999999999     8999999999999886654444333

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=4.4e-44  Score=378.65  Aligned_cols=276  Identities=29%  Similarity=0.383  Sum_probs=209.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-------chhHHHHHHHHHHhcC---CCCceEEecceEEeC
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-------SKHYVSNELRMLERFG---GKNFIIKYEGCFKCG  269 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-------~~~~~~~Ei~iL~~L~---h~n~Ivkl~~~~~~~  269 (728)
                      .++|++.+.||+|+||+||+|++..+|+.||||++....       ....+.+|+.+++.+.   |+| |+++++++...
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~n-iv~~~~~~~~~   86 (308)
T 3g33_A            8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPN-VVRLMDVCATS   86 (308)
T ss_dssp             --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTT-BCCEEEEEEEC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCC-eEEeeeeeecc
Confidence            468999999999999999999999999999999986321       2345678888877765   998 99999999876


Q ss_pred             C-----eeEEEEeccCCCChHHHhhc----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeee
Q 004835          270 D-----SDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFN  340 (728)
Q Consensus       270 ~-----~~~LV~E~~~~~~l~~l~~~----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFG  340 (728)
                      .     ..++||||+.+++...+...    +++..++.++.||+.||+|||++||+||||||+|||++ .++.+||+|||
T Consensus        87 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~-~~~~~kl~Dfg  165 (308)
T 3g33_A           87 RTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVT-SGGTVKLADFG  165 (308)
T ss_dssp             CSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEEC-TTSCEEECSCS
T ss_pred             CCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEc-CCCCEEEeeCc
Confidence            5     58999999997555444432    89999999999999999999999999999999999998 66789999999


Q ss_pred             ccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCC
Q 004835          341 LAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADG  420 (728)
Q Consensus       341 lA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~  420 (728)
                      ++......                                                                        
T Consensus       166 ~a~~~~~~------------------------------------------------------------------------  173 (308)
T 3g33_A          166 LARIYSYQ------------------------------------------------------------------------  173 (308)
T ss_dssp             CTTTSTTC------------------------------------------------------------------------
T ss_pred             cccccCCC------------------------------------------------------------------------
Confidence            98641100                                                                        


Q ss_pred             CCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCC
Q 004835          421 SGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNG  500 (728)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (728)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (308)
T 3g33_A          174 --------------------------------------------------------------------------------  173 (308)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHH
Q 004835          501 IAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGV  580 (728)
Q Consensus       501 ~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~  580 (728)
                                                                   ......+||+.|+|||++.+.. ++.++|||||||
T Consensus       174 ---------------------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~  207 (308)
T 3g33_A          174 ---------------------------------------------MALTPVVVTLWYRAPEVLLQST-YATPVDMWSVGC  207 (308)
T ss_dssp             ---------------------------------------------CCSGGGGCCCSSCCHHHHHTSC-CCSTHHHHHHHH
T ss_pred             ---------------------------------------------cccCCccccccccCchHHcCCC-CCchHHHHHHHH
Confidence                                                         0011346899999999996655 699999999999


Q ss_pred             HHHHHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhc-ccCCCCCCchhhhhhhccCCcccccCc
Q 004835          581 TLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYA-AKSLPPINLPEWCKLITKRPDFLEVIP  658 (728)
Q Consensus       581 il~eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  658 (728)
                      ++|+|++|++||.+.+. +.+..+++..|.+...          .|+..... ....+......+.       .....++
T Consensus       208 il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  270 (308)
T 3g33_A          208 IFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPED----------DWPRDVSLPRGAFPPRGPRPVQ-------SVVPEME  270 (308)
T ss_dssp             HHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTT----------TSCSSCSSCGGGSCCCCCCCHH-------HHSCSCC
T ss_pred             HHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChh----------hccchhhccccccCCCCCCcHH-------HhCcccc
Confidence            99999999999998776 5677777777753311          11111000 0001111111111       1235678


Q ss_pred             hhHHHHHHHhcccCCCCCCCHHHHhcCCCCccch
Q 004835          659 SSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       659 ~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      +.+.+||.+||.+||++|||+.|+|+||||+...
T Consensus       271 ~~~~~li~~~L~~dP~~R~t~~e~l~h~~~~~~~  304 (308)
T 3g33_A          271 ESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDE  304 (308)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHTSTTC----
T ss_pred             HHHHHHHHHHhcCCCccCCCHHHHhcCccccCCC
Confidence            9999999999999999999999999999999754

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=8.9e-45  Score=405.83  Aligned_cols=269  Identities=23%  Similarity=0.344  Sum_probs=215.5

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+++|++.+.||+|+||.||+|++..+|+.||||++...     .....+.+|+.+++.+.|+| |+++++++...+..
T Consensus       145 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~l~~~~~~~~~~  223 (446)
T 4ejn_A          145 VTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPF-LTALKYSFQTHDRL  223 (446)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTT-SCCEEEEEEETTEE
T ss_pred             CChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCe-EeeEEEEEeeCCEE
Confidence            3467899999999999999999999999999999998642     23345678999999999998 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      |+||||+.++++..+..   .+++..++.++.||+.||+|||+ +|||||||||+||||+ .++.+||+|||+|+.....
T Consensus       224 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~-~~~~~kl~DFG~a~~~~~~  302 (446)
T 4ejn_A          224 CFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLD-KDGHIKITDFGLCKEGIKD  302 (446)
T ss_dssp             EEEECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEEC-SSSCEEECCCCCCCTTCC-
T ss_pred             EEEEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEEC-CCCCEEEccCCCceeccCC
Confidence            99999999998876653   38999999999999999999998 9999999999999999 6678999999998641100


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                      .                                                                               
T Consensus       303 ~-------------------------------------------------------------------------------  303 (446)
T 4ejn_A          303 G-------------------------------------------------------------------------------  303 (446)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       304 --------------------------------------------------------------------------------  303 (446)
T 4ejn_A          304 --------------------------------------------------------------------------------  303 (446)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                           ......+||+.|+|||++.+.. ++.++|||||||++|||++|
T Consensus       304 -------------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~ell~g  345 (446)
T 4ejn_A          304 -------------------------------------ATMKTFCGTPEYLAPEVLEDND-YGRAVDWWGLGVVMYEMMCG  345 (446)
T ss_dssp             ----------------------------------------CCSSSCGGGCCHHHHHTSC-CCTHHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------cccccccCCccccCHhhcCCCC-CCCccchhhhHHHHHHHhhC
Confidence                                                 0011356999999999995554 69999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          589 RTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       589 ~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      +.||.+.+...+...+..                                          ....++..+++.+.+||.+|
T Consensus       346 ~~Pf~~~~~~~~~~~i~~------------------------------------------~~~~~p~~~~~~~~~li~~~  383 (446)
T 4ejn_A          346 RLPFYNQDHEKLFELILM------------------------------------------EEIRFPRTLGPEAKSLLSGL  383 (446)
T ss_dssp             SCSSCCSSHHHHHHHHHH------------------------------------------CCCCCCTTSCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHh------------------------------------------CCCCCCccCCHHHHHHHHHH
Confidence            999998777655443321                                          12234456789999999999


Q ss_pred             cccCCCCCC-----CHHHHhcCCCCccchhcchHhHhhhccccc
Q 004835          669 LTVNPRLRI-----SAEDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       669 L~~dP~~Rp-----ta~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      |..||.+||     |++|+|+||||+++.+....++.+.+...+
T Consensus       384 L~~dP~~R~~~~~~t~~ell~hp~f~~~~~~~~~~~~~~pp~~p  427 (446)
T 4ejn_A          384 LKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYEKKLSPPFKP  427 (446)
T ss_dssp             TCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred             cccCHHHhCCCCCCCHHHHHhCccccCCCHHHHhhCcCCCCccC
Confidence            999999999     999999999999998766666555554444

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-45  Score=397.32  Aligned_cols=144  Identities=22%  Similarity=0.320  Sum_probs=129.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|.+.+.||+|+||.||+|++..+|+.||||++...     .....+.+|+.+++.++|+| |+++++++......|
T Consensus         7 ~i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~l~~~~~~~~~~~   85 (336)
T 3h4j_B            7 HIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPH-IIKLYDVITTPTDIV   85 (336)
T ss_dssp             EETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEE
T ss_pred             ccCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCC-CCeEEEEEEeCCEEE
Confidence            357999999999999999999999999999999998642     33457889999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+++++++.+..  .+++..++.++.||+.||.|||++||+||||||+|||++ +++.+||+|||++..
T Consensus        86 lv~E~~~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~-~~~~~kl~DFG~s~~  157 (336)
T 3h4j_B           86 MVIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLD-DNLNVKIADFGLSNI  157 (336)
T ss_dssp             EEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEEC-TTCCEEECCSSCTBT
T ss_pred             EEEECCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEc-CCCCEEEEEecccee
Confidence            9999997666665543  489999999999999999999999999999999999999 667899999999864

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=3.5e-44  Score=387.68  Aligned_cols=288  Identities=23%  Similarity=0.331  Sum_probs=216.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcC-----CCCceEEecceEEeCCeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFG-----GKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~-----h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .++|.+.++||+|+||+||+|++..+++.||||++... .....+..|+.+++.+.     |+| |+++++++...+..|
T Consensus        34 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~-iv~~~~~~~~~~~~~  112 (360)
T 3llt_A           34 NNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNN-IVKYHGKFMYYDHMC  112 (360)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGG-BCCEEEEEEETTEEE
T ss_pred             cCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCC-eecccceeeECCeeE
Confidence            46899999999999999999999999999999998753 23455778999999997     777 999999999999999


Q ss_pred             EEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec-------------------
Q 004835          274 FVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC-------------------  329 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~-------------------  329 (728)
                      +||||+ ++++..+..     .+++..++.++.||+.||.|||++||+||||||+||||+.                   
T Consensus       113 lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~  191 (360)
T 3llt_A          113 LIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKI  191 (360)
T ss_dssp             EEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEE
T ss_pred             EEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchhcccccccc
Confidence            999999 555544432     2889999999999999999999999999999999999973                   


Q ss_pred             -----CCCceEEEeeeccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccc
Q 004835          330 -----KAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVH  404 (728)
Q Consensus       330 -----~~~~~kL~DFGlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (728)
                           ..+.+||+|||+|.....                                                         
T Consensus       192 ~~~~~~~~~~kl~DFG~a~~~~~---------------------------------------------------------  214 (360)
T 3llt_A          192 QIYRTKSTGIKLIDFGCATFKSD---------------------------------------------------------  214 (360)
T ss_dssp             EEEEESCCCEEECCCTTCEETTS---------------------------------------------------------
T ss_pred             cccccCCCCEEEEeccCceecCC---------------------------------------------------------
Confidence                 256678888888763100                                                         


Q ss_pred             cCCCcccccccCCCCCCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCC
Q 004835          405 NDLGSRNIINSQGADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKV  484 (728)
Q Consensus       405 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  484 (728)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (360)
T 3llt_A          215 --------------------------------------------------------------------------------  214 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccCCCCCCCCCcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhh
Q 004835          485 GKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLF  564 (728)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~  564 (728)
                                                                                    .....+||+.|+|||++.
T Consensus       215 --------------------------------------------------------------~~~~~~gt~~y~aPE~~~  232 (360)
T 3llt_A          215 --------------------------------------------------------------YHGSIINTRQYRAPEVIL  232 (360)
T ss_dssp             --------------------------------------------------------------CCCSCCSCGGGCCHHHHT
T ss_pred             --------------------------------------------------------------CCcCccCcccccCcHHHc
Confidence                                                                          001346899999999996


Q ss_pred             ccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccC-CCCCcchhhcccCCCCC--Cc
Q 004835          565 RSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNR-ESSFPEDLYAAKSLPPI--NL  640 (728)
Q Consensus       565 ~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~  640 (728)
                      +.. ++.++|||||||++|+|++|+.||.+... +.+..+....++............ ...+.........++..  ..
T Consensus       233 ~~~-~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  311 (360)
T 3llt_A          233 NLG-WDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSI  311 (360)
T ss_dssp             TCC-CCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCH
T ss_pred             CCC-CCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccch
Confidence            655 69999999999999999999999998776 556667777776443332222111 11111000000111111  11


Q ss_pred             hhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCc
Q 004835          641 PEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFA  689 (728)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~  689 (728)
                      ..........+.+....++.+.+||.+||.+||++||||.|+|+||||+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~hp~f~  360 (360)
T 3llt_A          312 NSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFLE  360 (360)
T ss_dssp             HHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             hhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcCcccC
Confidence            1222222333444555678899999999999999999999999999996

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.1e-44  Score=385.07  Aligned_cols=256  Identities=24%  Similarity=0.360  Sum_probs=210.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--------chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      +.|.+.+.||+|+||.||+|++..+|+.||+|++....        ....+.+|+.++..++|+| |+++++++......
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~   89 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPN-VITLHEVYENKTDV   89 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCC-CCcEEEEEEeCCEE
Confidence            46999999999999999999999999999999986432        2466889999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC---ceEEEeeecccccc
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV---KGYLIDFNLAMVGF  346 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~---~~kL~DFGlA~~~~  346 (728)
                      |+||||+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+|||++.++.   .+||+|||++....
T Consensus        90 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~  169 (326)
T 2y0a_A           90 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID  169 (326)
T ss_dssp             EEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECC
T ss_pred             EEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECC
Confidence            99999999988877654   3889999999999999999999999999999999999984332   79999999987421


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ..                                                                              
T Consensus       170 ~~------------------------------------------------------------------------------  171 (326)
T 2y0a_A          170 FG------------------------------------------------------------------------------  171 (326)
T ss_dssp             TT------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (326)
T 2y0a_A          172 --------------------------------------------------------------------------------  171 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                             ......+||+.|+|||++.+. .++.++|||||||++|+|+
T Consensus       172 ---------------------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~il~~ll  211 (326)
T 2y0a_A          172 ---------------------------------------NEFKNIFGTPEFVAPEIVNYE-PLGLEADMWSIGVITYILL  211 (326)
T ss_dssp             ---------------------------------------SCCCCCCSCTTTCCHHHHTTC-CCCTHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------CccccccCCcCcCCceeecCC-CCCcHHHHHHHHHHHHHHH
Confidence                                                   001134589999999999554 4699999999999999999


Q ss_pred             cCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          587 IGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       587 tG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      +|..||.+.....+...+....              ..++                        ..++..++..+.+||.
T Consensus       212 ~g~~pf~~~~~~~~~~~~~~~~--------------~~~~------------------------~~~~~~~~~~~~~li~  253 (326)
T 2y0a_A          212 SGASPFLGDTKQETLANVSAVN--------------YEFE------------------------DEYFSNTSALAKDFIR  253 (326)
T ss_dssp             HSCCSSCCSSHHHHHHHHHHTC--------------CCCC------------------------HHHHTTSCHHHHHHHH
T ss_pred             HCcCCCCCCCHHHHHHHHHhcC--------------CCcC------------------------ccccccCCHHHHHHHH
Confidence            9999999877654433222110              0111                        1123467889999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccchh
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      +||..||++|||+.|+|+||||++...
T Consensus       254 ~~L~~dP~~Rpt~~e~l~hp~~~~~~~  280 (326)
T 2y0a_A          254 RLLVKDPKKRMTIQDSLQHPWIKPKDT  280 (326)
T ss_dssp             HHSCSSGGGSCCHHHHHHSTTTSCCSH
T ss_pred             HHccCChhhCCCHHHHhcCCCccCCcc
Confidence            999999999999999999999997653

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=1.4e-44  Score=393.65  Aligned_cols=336  Identities=20%  Similarity=0.224  Sum_probs=223.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcC--------CCCceEEecceEE----
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFG--------GKNFIIKYEGCFK----  267 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~--------h~n~Ivkl~~~~~----  267 (728)
                      ++|++.+.||+|+||+||+|++..+++.||||++.... ....+.+|+.++..+.        |++ |+++++++.    
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~-iv~~~~~~~~~~~  115 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREM-VVQLLDDFKISGV  115 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGG-BCCEEEEEEEEET
T ss_pred             CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcce-eeeeecceeecCC
Confidence            68999999999999999999999999999999987543 3456789999999986        455 999999987    


Q ss_pred             eCCeeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeecc
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                      .+...|+||||+.++++..+..    .+++..++.|+.||+.||.|||++ ||+||||||+||||+.++ .....+++.+
T Consensus       116 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~-~~~~~~~~~~  194 (397)
T 1wak_A          116 NGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNE-QYIRRLAAEA  194 (397)
T ss_dssp             TEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCH-HHHHHHHHHH
T ss_pred             CCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccc-hhhhhhhhhh
Confidence            5568999999998888877754    389999999999999999999998 999999999999998432 2111222211


Q ss_pred             ccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCC
Q 004835          343 MVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSG  422 (728)
Q Consensus       343 ~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~  422 (728)
                      .......... ..+......|..              ...+......    ..........+.|||.+....        
T Consensus       195 ~~~~~~~~~~-~~~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~~~kl~DfG~a~~~~--------  247 (397)
T 1wak_A          195 TEWQRSGAPP-PSGSAVSTAPAT--------------AGNFLVNPLE----PKNAEKLKVKIADLGNACWVH--------  247 (397)
T ss_dssp             C------------------------------------CCTTSCCTTS----GGGGGGCCEEECCGGGCEETT--------
T ss_pred             HHHhhcCCCC-CCCCccccCCcc--------------cccccccccc----cccccccceEecccccccccc--------
Confidence            1100000000 000000000000              0000000000    001111223455565543221        


Q ss_pred             ccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcc
Q 004835          423 ITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIA  502 (728)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (728)
                                                                                                      
T Consensus       248 --------------------------------------------------------------------------------  247 (397)
T 1wak_A          248 --------------------------------------------------------------------------------  247 (397)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHH
Q 004835          503 VAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTL  582 (728)
Q Consensus       503 ~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il  582 (728)
                                                                 ......+||+.|+|||++.+.. ++.++|||||||++
T Consensus       248 -------------------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il  283 (397)
T 1wak_A          248 -------------------------------------------KHFTEDIQTRQYRSLEVLIGSG-YNTPADIWSTACMA  283 (397)
T ss_dssp             -------------------------------------------BCSCSCCSCGGGCCHHHHHTSC-CCTHHHHHHHHHHH
T ss_pred             -------------------------------------------ccCccCCCCCcccCChhhcCCC-CCcHHHHHHHHHHH
Confidence                                                       1122456899999999997665 69999999999999


Q ss_pred             HHHhcCCCCCCCCC-------hHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccc
Q 004835          583 LYLMIGRTPFFGDP-------EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLE  655 (728)
Q Consensus       583 ~eLltG~~PF~~~~-------~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (728)
                      |+|++|+.||.+.+       ...+..+++.+|......+.........| ........+.........+.......+..
T Consensus       284 ~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (397)
T 1wak_A          284 FELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFF-TKKGDLKHITKLKPWGLFEVLVEKYEWSQ  362 (397)
T ss_dssp             HHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTB-CTTSSBSSCCCCCCCCHHHHHHHTSCCCH
T ss_pred             HHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhccccccccc-CCccccccccccCCcchhHhhhhhcccch
Confidence            99999999997643       35678888888975443332221111111 11112222233333333344445556677


Q ss_pred             cCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCcc
Q 004835          656 VIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAP  690 (728)
Q Consensus       656 ~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~  690 (728)
                      .++..+.+||.+||.+||++|||++|+|+||||++
T Consensus       363 ~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  397 (397)
T 1wak_A          363 EEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS  397 (397)
T ss_dssp             HHHHHHHHHHGGGGCSSGGGSCCHHHHHTSGGGGC
T ss_pred             hhHHHHHHHHHHHhccChhhcCCHHHHhhCccccC
Confidence            78889999999999999999999999999999974

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=1.8e-44  Score=395.11  Aligned_cols=150  Identities=23%  Similarity=0.302  Sum_probs=134.4

Q ss_pred             ccccCCCCCCeeEEEEeccc--CceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceE
Q 004835          193 NAKVLPNFESFIVEEEEGSG--GYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCF  266 (728)
Q Consensus       193 ~~~~~~~~~~y~i~~~LG~G--~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~  266 (728)
                      .....+..++|++.+.||+|  +||.||+|++..+|+.||||++....    ....+.+|+.+++.++|+| |+++++++
T Consensus        17 ~s~~~~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~   95 (389)
T 3gni_B           17 MSSFLPEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPN-IVPYRATF   95 (389)
T ss_dssp             -CCCCCCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEE
T ss_pred             hhcccCCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCC-CCcEeEEE
Confidence            34566778899999999999  99999999999999999999987542    2355778999999999999 99999999


Q ss_pred             EeCCeeEEEEeccCCCChHHHh-----hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeec
Q 004835          267 KCGDSDCFVLEHVKHDRPEVLK-----KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNL  341 (728)
Q Consensus       267 ~~~~~~~LV~E~~~~~~l~~l~-----~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGl  341 (728)
                      ..++..|+||||+.++++..+.     ..+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+
T Consensus        96 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~-~~~~~kl~dfg~  174 (389)
T 3gni_B           96 IADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILIS-VDGKVYLSGLRS  174 (389)
T ss_dssp             EETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTCCEEECCGGG
T ss_pred             EECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEc-CCCCEEEccccc
Confidence            9999999999999999887765     3388999999999999999999999999999999999999 667899999999


Q ss_pred             ccc
Q 004835          342 AMV  344 (728)
Q Consensus       342 A~~  344 (728)
                      +..
T Consensus       175 ~~~  177 (389)
T 3gni_B          175 NLS  177 (389)
T ss_dssp             CEE
T ss_pred             cee
Confidence            864

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=1.3e-44  Score=387.81  Aligned_cols=145  Identities=25%  Similarity=0.334  Sum_probs=129.6

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +.+++|++.+.||+|+||+||+|++..+++.||||++....   ..+.+.+|+.+++.++|+| |+++++++..++..|+
T Consensus         4 ~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~~~~~~~~~~~~~l   82 (323)
T 3tki_A            4 PFVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN-VVKFYGHRREGNIQYL   82 (323)
T ss_dssp             TTTTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTT-BCCEEEEEECSSEEEE
T ss_pred             cHhhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCC-CCeEEEEEecCCeEEE
Confidence            45689999999999999999999999999999999986432   2356789999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||++..
T Consensus        83 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~-~~~~~kl~Dfg~a~~  154 (323)
T 3tki_A           83 FLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD-ERDNLKISDFGLATV  154 (323)
T ss_dssp             EEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTCCEEECCCTTCEE
T ss_pred             EEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEe-CCCCEEEEEeeccce
Confidence            999999988766653   489999999999999999999999999999999999999 667899999999975

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.6e-44  Score=380.36  Aligned_cols=144  Identities=26%  Similarity=0.389  Sum_probs=125.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----------------------------chhHHHHHHHHH
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----------------------------SKHYVSNELRML  250 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----------------------------~~~~~~~Ei~iL  250 (728)
                      .+++|++.+.||+|+||.||+|++..+|+.||||++....                            ..+.+.+|+.++
T Consensus        11 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   90 (298)
T 2zv2_A           11 QLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAIL   90 (298)
T ss_dssp             EETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHH
T ss_pred             eecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHH
Confidence            3579999999999999999999999999999999986432                            124578999999


Q ss_pred             HhcCCCCceEEecceEEe--CCeeEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceE
Q 004835          251 ERFGGKNFIIKYEGCFKC--GDSDCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFL  326 (728)
Q Consensus       251 ~~L~h~n~Ivkl~~~~~~--~~~~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNIL  326 (728)
                      ++++|+| |+++++++..  ....|+||||+.++++..+..  .+++..++.++.||+.||.|||++||+||||||+|||
T Consensus        91 ~~l~h~~-iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil  169 (298)
T 2zv2_A           91 KKLDHPN-VVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLL  169 (298)
T ss_dssp             HTCCCTT-BCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             HhCCCCC-CCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEE
Confidence            9999999 9999999986  568999999999887766543  4899999999999999999999999999999999999


Q ss_pred             eecCCCceEEEeeecccc
Q 004835          327 FSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       327 ld~~~~~~kL~DFGlA~~  344 (728)
                      ++ .++.+||+|||++..
T Consensus       170 ~~-~~~~~kl~Dfg~~~~  186 (298)
T 2zv2_A          170 VG-EDGHIKIADFGVSNE  186 (298)
T ss_dssp             EC-TTSCEEECCCTTCEE
T ss_pred             EC-CCCCEEEecCCCccc
Confidence            99 667899999999874

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.3e-44  Score=392.17  Aligned_cols=255  Identities=26%  Similarity=0.364  Sum_probs=207.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-------CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-------ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      +.|++.+.||+|+||+||+|++..+|+.||||++...       ...+.+.+|+.++..++|+| |+++++++...+..|
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPH-IVELLETYSSDGMLY  102 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTT-BCCEEEEEEETTEEE
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCC-CCcEEEEEEeCCEEE
Confidence            4799999999999999999999999999999998532       23567889999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHh-h------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC--CceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLK-K------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA--VKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~-~------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~--~~~kL~DFGlA~~  344 (728)
                      +||||+.++.+.... .      .+++..++.++.||+.||.|||++||+||||||+|||++.++  ..+||+|||++..
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~  182 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQ  182 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEE
T ss_pred             EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeE
Confidence            999999998875443 1      278999999999999999999999999999999999998432  3489999999975


Q ss_pred             ccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcc
Q 004835          345 GFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGIT  424 (728)
Q Consensus       345 ~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~  424 (728)
                      .....                                                                           
T Consensus       183 ~~~~~---------------------------------------------------------------------------  187 (351)
T 3c0i_A          183 LGESG---------------------------------------------------------------------------  187 (351)
T ss_dssp             CCTTS---------------------------------------------------------------------------
T ss_pred             ecCCC---------------------------------------------------------------------------
Confidence            21100                                                                           


Q ss_pred             ccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccc
Q 004835          425 SAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVA  504 (728)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (728)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (351)
T 3c0i_A          188 --------------------------------------------------------------------------------  187 (351)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHH
Q 004835          505 GAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLY  584 (728)
Q Consensus       505 ~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~e  584 (728)
                                                               ......+||+.|+|||++.+.. ++.++|||||||++|+
T Consensus       188 -----------------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~~  225 (351)
T 3c0i_A          188 -----------------------------------------LVAGGRVGTPHFMAPEVVKREP-YGKPVDVWGCGVILFI  225 (351)
T ss_dssp             -----------------------------------------CBCCCCCSCGGGCCHHHHTTCC-BCTHHHHHHHHHHHHH
T ss_pred             -----------------------------------------eeecCCcCCcCccCHHHHcCCC-CCchHhhHHHHHHHHH
Confidence                                                     0011346999999999996554 6999999999999999


Q ss_pred             HhcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHH
Q 004835          585 LMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL  664 (728)
Q Consensus       585 LltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dL  664 (728)
                      |++|..||.+.....+..+..  +             ...+             ..           ..+..++..+.+|
T Consensus       226 ll~g~~pf~~~~~~~~~~i~~--~-------------~~~~-------------~~-----------~~~~~~s~~~~~l  266 (351)
T 3c0i_A          226 LLSGCLPFYGTKERLFEGIIK--G-------------KYKM-------------NP-----------RQWSHISESAKDL  266 (351)
T ss_dssp             HHHSSCSSCSSHHHHHHHHHH--T-------------CCCC-------------CH-----------HHHTTSCHHHHHH
T ss_pred             HHHCCCCCCCcHHHHHHHHHc--C-------------CCCC-------------Cc-----------cccccCCHHHHHH
Confidence            999999998864433333221  1             0000             01           1124578999999


Q ss_pred             HHHhcccCCCCCCCHHHHhcCCCCccch
Q 004835          665 VDKCLTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       665 i~~~L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      |.+||..||++|||+.|+|+||||++..
T Consensus       267 i~~~L~~dP~~R~s~~e~l~hp~~~~~~  294 (351)
T 3c0i_A          267 VRRMLMLDPAERITVYEALNHPWLKERD  294 (351)
T ss_dssp             HHHHTCSSTTTSCCHHHHHTSHHHHTHH
T ss_pred             HHHHCCCChhHCcCHHHHhcChhhcCCc
Confidence            9999999999999999999999998754

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=2.5e-44  Score=402.88  Aligned_cols=266  Identities=23%  Similarity=0.304  Sum_probs=217.3

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ....++|++.++||+|+||+||+|++..+++.||||++...     .....+.+|+.++..+.|++ |++++++|.+.+.
T Consensus        70 ~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~-Iv~l~~~~~~~~~  148 (437)
T 4aw2_A           70 RLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKW-ITTLHYAFQDDNN  148 (437)
T ss_dssp             SCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTT-BCCEEEEEECSSE
T ss_pred             cCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCC-EEEEEEEEeeCCE
Confidence            34567899999999999999999999999999999998642     23344789999999999998 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccC
Q 004835          272 DCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFD  347 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~  347 (728)
                      .|+||||+.++.+..+..    .+++..++.++.||+.||.|||++|||||||||+||||+ .++.+||+|||+|+....
T Consensus       149 ~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~-~~g~vkL~DFGla~~~~~  227 (437)
T 4aw2_A          149 LYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMD-MNGHIRLADFGSCLKLME  227 (437)
T ss_dssp             EEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTSCEEECCCTTCEECCT
T ss_pred             EEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEc-CCCCEEEcchhhhhhccc
Confidence            999999999998877653    389999999999999999999999999999999999999 667899999999974211


Q ss_pred             CCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccc
Q 004835          348 GSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAK  427 (728)
Q Consensus       348 ~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~  427 (728)
                      ...                                                                             
T Consensus       228 ~~~-----------------------------------------------------------------------------  230 (437)
T 4aw2_A          228 DGT-----------------------------------------------------------------------------  230 (437)
T ss_dssp             TSC-----------------------------------------------------------------------------
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             cccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCC
Q 004835          428 EATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAG  507 (728)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (728)
                                                                                                      
T Consensus       231 --------------------------------------------------------------------------------  230 (437)
T 4aw2_A          231 --------------------------------------------------------------------------------  230 (437)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhc----cCCCCCchhHHHHHHHHH
Q 004835          508 LMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFR----SQHQGPKLDIWSAGVTLL  583 (728)
Q Consensus       508 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~----~~~~~~~~DIWSlG~il~  583 (728)
                                                            ......+||+.|+|||++..    ...|+.++|||||||++|
T Consensus       231 --------------------------------------~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~  272 (437)
T 4aw2_A          231 --------------------------------------VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMY  272 (437)
T ss_dssp             --------------------------------------EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHH
T ss_pred             --------------------------------------cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHH
Confidence                                                  00113469999999999962    345799999999999999


Q ss_pred             HHhcCCCCCCCCChHHHH-HHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHH
Q 004835          584 YLMIGRTPFFGDPEQNIK-DIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF  662 (728)
Q Consensus       584 eLltG~~PF~~~~~~~l~-~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (728)
                      ||++|++||.+.+...+. .|+...+             ...|                         +.....+++++.
T Consensus       273 elltG~~Pf~~~~~~~~~~~i~~~~~-------------~~~~-------------------------p~~~~~~s~~~~  314 (437)
T 4aw2_A          273 EMLYGETPFYAESLVETYGKIMNHKE-------------RFQF-------------------------PTQVTDVSENAK  314 (437)
T ss_dssp             HHHHSSCTTCCSSHHHHHHHHHTHHH-------------HCCC-------------------------CSSCCCSCHHHH
T ss_pred             HHHhCCCCCCCCChhHHHHhhhhccc-------------cccC-------------------------CcccccCCHHHH
Confidence            999999999988765433 3321000             0011                         122245789999


Q ss_pred             HHHHHhcccCCCC--CCCHHHHhcCCCCccchhcchH
Q 004835          663 DLVDKCLTVNPRL--RISAEDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       663 dLi~~~L~~dP~~--Rpta~e~L~Hp~f~~~~~~~~~  697 (728)
                      +||.+||+.+|++  |++++|+++||||+++.+....
T Consensus       315 dLi~~lL~~~~~r~~r~~~~eil~Hpff~~i~w~~l~  351 (437)
T 4aw2_A          315 DLIRRLICSREHRLGQNGIEDFKKHPFFSGIDWDNIR  351 (437)
T ss_dssp             HHHHTTSSCGGGCTTTTTTHHHHTSGGGTTCCTTTGG
T ss_pred             HHHHHHhcccccccCCCCHHHHhCCCccCCCCHHHHh
Confidence            9999999999988  9999999999999999877653

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-44  Score=388.15  Aligned_cols=257  Identities=23%  Similarity=0.346  Sum_probs=212.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .++|.+.+.||+|+||.||+|.+..+++.||+|++.... ....+.+|+.++..++|+| |+++++++...+..|+||||
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~~~~~~~~~~~~~lv~e~   82 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRN-ILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTT-BCCEEEEEEETTEEEEEECC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCC-CCeEeEEEecCCEEEEEEEe
Confidence            468999999999999999999999999999999987543 3456789999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC-CCceEEEeeeccccccCCCCccc
Q 004835          279 VKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       279 ~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~-~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      +.++.+..+..    .+++..+..++.||+.||.|||++||+||||||+|||++.+ ++.+||+|||++.......    
T Consensus        83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~----  158 (321)
T 1tki_A           83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD----  158 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC----
T ss_pred             CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC----
Confidence            99988876653    38899999999999999999999999999999999999843 6789999999997521000    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (321)
T 1tki_A          159 --------------------------------------------------------------------------------  158 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (321)
T 1tki_A          159 --------------------------------------------------------------------------------  158 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                       .....+||+.|+|||++.+.. ++.++|||||||++|+|++|..||.
T Consensus       159 ---------------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~~ll~g~~pf~  204 (321)
T 1tki_A          159 ---------------------------------NFRLLFTAPEYYAPEVHQHDV-VSTATDMWSLGTLVYVLLSGINPFL  204 (321)
T ss_dssp             ---------------------------------EEEEEESCGGGSCHHHHTTCE-ECHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ---------------------------------ccccccCChhhcCcHHhcCCC-CCchhhHHHHHHHHHHHHhCCCCCc
Confidence                                             001235899999999996544 6899999999999999999999999


Q ss_pred             CCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCC
Q 004835          594 GDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNP  673 (728)
Q Consensus       594 ~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP  673 (728)
                      +.+...+...+...              ...++.                        ..+..++.++.+||.+||..||
T Consensus       205 ~~~~~~~~~~i~~~--------------~~~~~~------------------------~~~~~~s~~~~~li~~~L~~dp  246 (321)
T 1tki_A          205 AETNQQIIENIMNA--------------EYTFDE------------------------EAFKEISIEAMDFVDRLLVKER  246 (321)
T ss_dssp             CSSHHHHHHHHHHT--------------CCCCCH------------------------HHHTTSCHHHHHHHHTTSCSSG
T ss_pred             CCCHHHHHHHHHcC--------------CCCCCh------------------------hhhccCCHHHHHHHHHHcCCCh
Confidence            88775543322110              011110                        1124678999999999999999


Q ss_pred             CCCCCHHHHhcCCCCccchh
Q 004835          674 RLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       674 ~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      .+|||+.|+|+||||++..+
T Consensus       247 ~~Rpt~~e~l~hp~~~~~~~  266 (321)
T 1tki_A          247 KSRMTASEALQHPWLKQKIE  266 (321)
T ss_dssp             GGSCCHHHHHHSHHHHSCGG
T ss_pred             hHCcCHHHHhcChhhccCcc
Confidence            99999999999999987544

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=8.2e-44  Score=386.85  Aligned_cols=292  Identities=26%  Similarity=0.370  Sum_probs=226.5

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeC---
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCG---  269 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~---  269 (728)
                      +....++|++.+.||+|+||.||+|++..+++.||||++.....   ...+.+|+.++.+++|+| |+++++++...   
T Consensus        22 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~  100 (364)
T 3qyz_A           22 VFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHEN-IIGINDIIRAPTIE  100 (364)
T ss_dssp             BCCCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTT-BCCCCEEECCSSTT
T ss_pred             eccccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCC-CccceeEEecCCcc
Confidence            33344689999999999999999999999999999999875332   356789999999999999 99999998755   


Q ss_pred             --CeeEEEEeccCCCChHHHhh-cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccccc
Q 004835          270 --DSDCFVLEHVKHDRPEVLKK-EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGF  346 (728)
Q Consensus       270 --~~~~LV~E~~~~~~l~~l~~-~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~  346 (728)
                        ...|+||||+.+++...+.. .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||++....
T Consensus       101 ~~~~~~iv~e~~~~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~-~~~~~kl~Dfg~a~~~~  179 (364)
T 3qyz_A          101 QMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLN-TTCDLKICDFGLARVAD  179 (364)
T ss_dssp             TCCCEEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTCCEEECCCTTCEECC
T ss_pred             ccceEEEEEcccCcCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEEC-CCCCEEEEeCcceEecC
Confidence              36899999999865554443 489999999999999999999999999999999999999 66789999999997521


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ....                                                                            
T Consensus       180 ~~~~----------------------------------------------------------------------------  183 (364)
T 3qyz_A          180 PDHD----------------------------------------------------------------------------  183 (364)
T ss_dssp             GGGC----------------------------------------------------------------------------
T ss_pred             CCCC----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (364)
T 3qyz_A          184 --------------------------------------------------------------------------------  183 (364)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                           ........+||+.|+|||++.+...++.++|||||||++|+|+
T Consensus       184 -------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell  226 (364)
T 3qyz_A          184 -------------------------------------HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEML  226 (364)
T ss_dssp             -------------------------------------BCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------ccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHH
Confidence                                                 0001124569999999999877776899999999999999999


Q ss_pred             cCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHH
Q 004835          587 IGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLV  665 (728)
Q Consensus       587 tG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi  665 (728)
                      +|++||.+... +.+..++..+|.+....+....+...     .......+......|..       +...++.++.+||
T Consensus       227 ~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~li  294 (364)
T 3qyz_A          227 SNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKA-----RNYLLSLPHKNKVPWNR-------LFPNADSKALDLL  294 (364)
T ss_dssp             HSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHH-----HHHHHTSCCCCCCCHHH-------HCTTSCHHHHHHH
T ss_pred             HCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhH-----HHHHHhcCCccCCCHHH-------hCCCCCHHHHHHH
Confidence            99999988765 67888888889866544432211000     00001111111112221       2345788999999


Q ss_pred             HHhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          666 DKCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       666 ~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      .+||.+||++|||+.|+|+||||++....
T Consensus       295 ~~~L~~dP~~R~t~~e~l~hp~~~~~~~~  323 (364)
T 3qyz_A          295 DKMLTFNPHKRIEVEQALAHPYLEQYYDP  323 (364)
T ss_dssp             HHHTCSSTTTSCCHHHHHTSGGGTTTCCG
T ss_pred             HHHcCCChhhCCCHHHHhcCcchhhccCc
Confidence            99999999999999999999999987543

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=2.7e-44  Score=394.41  Aligned_cols=268  Identities=23%  Similarity=0.296  Sum_probs=213.1

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHH-HHhcCCCCceEEecceEEeCCe
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRM-LERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~i-L~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ...++|++++.||+|+||.||+|++..+++.||||++....     ....+.+|..+ ++.+.|++ |++++++|...+.
T Consensus        35 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~-Iv~l~~~~~~~~~  113 (373)
T 2r5t_A           35 AKPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPF-LVGLHFSFQTADK  113 (373)
T ss_dssp             CCGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTT-BCCEEEEEECSSE
T ss_pred             CChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCC-CCCEEEEEEeCCE
Confidence            45679999999999999999999999999999999987532     23345567666 46788988 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          272 DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      .|+||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+++.....
T Consensus       114 ~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~-~~g~ikL~DFG~a~~~~~~  192 (373)
T 2r5t_A          114 LYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLD-SQGHIVLTDFGLCKENIEH  192 (373)
T ss_dssp             EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTSCEEECCCCBCGGGBCC
T ss_pred             EEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEC-CCCCEEEeeCccccccccC
Confidence            999999999988876653   389999999999999999999999999999999999999 6678999999998741100


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                      .                                                                               
T Consensus       193 ~-------------------------------------------------------------------------------  193 (373)
T 2r5t_A          193 N-------------------------------------------------------------------------------  193 (373)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (373)
T 2r5t_A          194 --------------------------------------------------------------------------------  193 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                           ......+||+.|+|||++.+.. ++.++|||||||++|||++|
T Consensus       194 -------------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~ell~G  235 (373)
T 2r5t_A          194 -------------------------------------STTSTFCGTPEYLAPEVLHKQP-YDRTVDWWCLGAVLYEMLYG  235 (373)
T ss_dssp             -------------------------------------CCCCSBSCCCCCCCHHHHTTCC-CCTHHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------CccccccCCccccCHHHhCCCC-CCchhhhHHHHHHHHHHHcC
Confidence                                                 0112456999999999996554 69999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          589 RTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       589 ~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      .+||.+.+...+...+.                                          .....++..++..+.+||.+|
T Consensus       236 ~~Pf~~~~~~~~~~~i~------------------------------------------~~~~~~~~~~~~~~~~li~~l  273 (373)
T 2r5t_A          236 LPPFYSRNTAEMYDNIL------------------------------------------NKPLQLKPNITNSARHLLEGL  273 (373)
T ss_dssp             SCTTCCSBHHHHHHHHH------------------------------------------HSCCCCCSSSCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHH------------------------------------------hcccCCCCCCCHHHHHHHHHH
Confidence            99999877654433221                                          112233456789999999999


Q ss_pred             cccCCCCCCCH----HHHhcCCCCccchhcchHhHhhhcccc
Q 004835          669 LTVNPRLRISA----EDALKHEFFAPCHEMLRKQKLLRQGSS  706 (728)
Q Consensus       669 L~~dP~~Rpta----~e~L~Hp~f~~~~~~~~~~~~~~~~~~  706 (728)
                      |..||.+||++    .++++||||+.+.+....++.+.+...
T Consensus       274 L~~dp~~R~~~~~~~~~i~~h~~f~~~~w~~l~~~~~~pp~~  315 (373)
T 2r5t_A          274 LQKDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKITPPFN  315 (373)
T ss_dssp             TCSSGGGSTTTTTTHHHHHTSGGGTTCCHHHHHTTCSCCSCC
T ss_pred             cccCHHhCCCCCCCHHHHhCCccccCCCHHHHHhCCCCCCCC
Confidence            99999999986    699999999999987666555544433

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=4.6e-44  Score=385.87  Aligned_cols=289  Identities=25%  Similarity=0.358  Sum_probs=216.8

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCe------
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS------  271 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~------  271 (728)
                      .+++|++.+.||+|+||.||+|++..+|+.||||++... .......+|+..+..+.|+| |+++++++.....      
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~n-iv~~~~~~~~~~~~~~~~~   99 (360)
T 3e3p_A           21 EMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPN-IVQLQSYFYTLGERDRRDI   99 (360)
T ss_dssp             HHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTT-BCCEEEEEEEECSSCTTCE
T ss_pred             hccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCC-cccHHHhhhccccccccce
Confidence            457999999999999999999999999999999987643 33455678888899999999 9999999875433      


Q ss_pred             -eEEEEeccCCCChHHHhh------cCChHHHHHHHHHHHHHHHHHH--hCCcEeccCCCCceEeecCCCceEEEeeecc
Q 004835          272 -DCFVLEHVKHDRPEVLKK------EIDLSQLQWYGYCLFRALASLH--KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       272 -~~LV~E~~~~~~l~~l~~------~l~~~~~~~i~~QIl~aL~yLH--s~gIIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                       .|+||||+.+++...+..      .+++..+..++.||+.||.|||  ++||+||||||+||||+..++.+||+|||++
T Consensus       100 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a  179 (360)
T 3e3p_A          100 YLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSA  179 (360)
T ss_dssp             EEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEECCCTTC
T ss_pred             eEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEeeCCCc
Confidence             899999999986654432      3788899999999999999999  9999999999999999954788999999998


Q ss_pred             ccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCC
Q 004835          343 MVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSG  422 (728)
Q Consensus       343 ~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~  422 (728)
                      ......                                                                          
T Consensus       180 ~~~~~~--------------------------------------------------------------------------  185 (360)
T 3e3p_A          180 KKLSPS--------------------------------------------------------------------------  185 (360)
T ss_dssp             BCCCTT--------------------------------------------------------------------------
T ss_pred             eecCCC--------------------------------------------------------------------------
Confidence            742100                                                                          


Q ss_pred             ccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcc
Q 004835          423 ITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIA  502 (728)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (728)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (360)
T 3e3p_A          186 --------------------------------------------------------------------------------  185 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHH
Q 004835          503 VAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTL  582 (728)
Q Consensus       503 ~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il  582 (728)
                                                                 ......+||+.|+|||++.+...++.++|||||||++
T Consensus       186 -------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il  222 (360)
T 3e3p_A          186 -------------------------------------------EPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIF  222 (360)
T ss_dssp             -------------------------------------------SCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHH
T ss_pred             -------------------------------------------CCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHH
Confidence                                                       0011345899999999997777689999999999999


Q ss_pred             HHHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhH
Q 004835          583 LYLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL  661 (728)
Q Consensus       583 ~eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  661 (728)
                      |+|++|+.||.+.+. ..+..+++..|.+....+..+......+.  ..      ......|....   .......++.+
T Consensus       223 ~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~---~~~~~~~~~~~  291 (360)
T 3e3p_A          223 AEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVD--LY------NSKGIPWSNVF---SDHSLKDAKEA  291 (360)
T ss_dssp             HHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGG--GG------CCCCCCHHHHT---TTCCCTTHHHH
T ss_pred             HHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhcc--cc------ccccCCccccc---chhhccccHHH
Confidence            999999999998776 57888888888766555444433222111  00      01111232221   22334567899


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCccchhcch
Q 004835          662 FDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       662 ~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      .+||.+||.+||.+|||+.|+|+||||+++.+...
T Consensus       292 ~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~  326 (360)
T 3e3p_A          292 YDLLSALLQYLPEERMKPYEALCHPYFDELHDPAT  326 (360)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGCTTC
T ss_pred             HHHHHHHhccCccccCCHHHHhcCccccccCCccc
Confidence            99999999999999999999999999999876544

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=2.4e-44  Score=391.99  Aligned_cols=149  Identities=17%  Similarity=0.222  Sum_probs=131.2

Q ss_pred             ccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          195 KVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       195 ~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+....++|++.+.||+|+||+||+|++..+++.||||++... .....+.+|+.+++.++|+| |+++++++......|
T Consensus        14 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~   92 (361)
T 3uc3_A           14 PIMHDSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPN-IVRFKEVILTPTHLA   92 (361)
T ss_dssp             CCCCCTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEEE
T ss_pred             cCCCCCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCC-CCcEEEEEeeCCEEE
Confidence            3445678999999999999999999999999999999998754 34567889999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC-CceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~-~~~kL~DFGlA~~  344 (728)
                      +||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+.++ ..+||+|||+++.
T Consensus        93 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~  167 (361)
T 3uc3_A           93 IIMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKS  167 (361)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC--
T ss_pred             EEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCcccc
Confidence            9999999988876643   489999999999999999999999999999999999998332 3499999999863

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=6.7e-44  Score=400.09  Aligned_cols=255  Identities=26%  Similarity=0.392  Sum_probs=208.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ++|++.+.||+|+||.||+|.+..+|+.||+|++....    ....+.+|+.+++.++||| |+++++++...+..|+||
T Consensus        11 ~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~l~~~~~~~~~~~lv~   89 (444)
T 3soa_A           11 EEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPN-IVRLHDSISEEGHHYLIF   89 (444)
T ss_dssp             HHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTT-BCCEEEEEECSSEEEEEE
T ss_pred             CCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcC-CCeEEEEEEECCEEEEEE
Confidence            47999999999999999999999999999999987543    2345789999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec--CCCceEEEeeeccccccCCCCc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC--KAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~--~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      ||+.++.+.....   .+++..+..++.||+.||.|||++||+||||||+|||++.  +++.+||+|||++.......  
T Consensus        90 E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~--  167 (444)
T 3soa_A           90 DLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQ--  167 (444)
T ss_dssp             CCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTC--
T ss_pred             EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCC--
Confidence            9999988765542   3899999999999999999999999999999999999984  34679999999996421000  


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (444)
T 3soa_A          168 --------------------------------------------------------------------------------  167 (444)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (444)
T 3soa_A          168 --------------------------------------------------------------------------------  167 (444)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                        ......+||+.|+|||++.+. .++.++|||||||++|+|++|.+|
T Consensus       168 ----------------------------------~~~~~~~gt~~Y~APE~l~~~-~~~~~~DIwSlGvilyell~G~~P  212 (444)
T 3soa_A          168 ----------------------------------QAWFGFAGTPGYLSPEVLRKD-PYGKPVDLWACGVILYILLVGYPP  212 (444)
T ss_dssp             ----------------------------------CBCCCSCSCGGGCCHHHHTTC-CBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------------------------ceeecccCCcccCCHHHhcCC-CCCCccccHHHHHHHHHHHhCCCC
Confidence                                              001134699999999999554 469999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          592 FFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       592 F~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      |.+.+...+...+.. |             ...++             .           ..+..+++++.+||.+||..
T Consensus       213 f~~~~~~~~~~~i~~-~-------------~~~~~-------------~-----------~~~~~~s~~~~~li~~~L~~  254 (444)
T 3soa_A          213 FWDEDQHRLYQQIKA-G-------------AYDFP-------------S-----------PEWDTVTPEAKDLINKMLTI  254 (444)
T ss_dssp             CCCSSHHHHHHHHHH-T-------------CCCCC-------------T-----------TTTTTSCHHHHHHHHHHSCS
T ss_pred             CCCccHHHHHHHHHh-C-------------CCCCC-------------c-----------cccccCCHHHHHHHHHHcCC
Confidence            998877655443321 1             01111             0           11246789999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccc
Q 004835          672 NPRLRISAEDALKHEFFAPC  691 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~  691 (728)
                      ||++|||+.|+|+||||+..
T Consensus       255 dP~~Rpta~e~L~hp~~~~~  274 (444)
T 3soa_A          255 NPSKRITAAEALKHPWISHR  274 (444)
T ss_dssp             STTTSCCHHHHHHSCTTHHH
T ss_pred             ChhHCCCHHHHhcCccccCC
Confidence            99999999999999999854

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=5.6e-44  Score=389.53  Aligned_cols=254  Identities=27%  Similarity=0.407  Sum_probs=209.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ++|++.+.||+|+||.||+|.+..+|+.||+|++....    ....+.+|+.++..++|+| |+++++++...+..|+||
T Consensus        29 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~~~~~~~~~~~~~lv~  107 (362)
T 2bdw_A           29 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPN-IVRLHDSIQEESFHYLVF  107 (362)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEEEEEE
T ss_pred             cCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEEeCCEEEEEE
Confidence            47999999999999999999999999999999987542    2346789999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEeeeccccccCCCCc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      ||+.++.+.....   .+++..+..++.||+.||.|||++||+||||||+|||++.+  +..+||+|||++......   
T Consensus       108 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~---  184 (362)
T 2bdw_A          108 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS---  184 (362)
T ss_dssp             CCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTC---
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCC---
Confidence            9999988765542   38899999999999999999999999999999999999843  346999999998642100   


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (362)
T 2bdw_A          185 --------------------------------------------------------------------------------  184 (362)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (362)
T 2bdw_A          185 --------------------------------------------------------------------------------  184 (362)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                        ......+||+.|+|||++.+. .++.++|||||||++|+|++|.+|
T Consensus       185 ----------------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~il~~ll~g~~P  229 (362)
T 2bdw_A          185 ----------------------------------EAWHGFAGTPGYLSPEVLKKD-PYSKPVDIWACGVILYILLVGYPP  229 (362)
T ss_dssp             ----------------------------------CSCCCSCSCTTTCCHHHHTTC-CCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------------------------cccccCCCCccccCHHHHccC-CCCchhhHHHHHHHHHHHHHCCCC
Confidence                                              001134689999999999554 469999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          592 FFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       592 F~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      |.+.+...+...+.. |             ...|+             .           ..+..+++++.+||.+||..
T Consensus       230 f~~~~~~~~~~~i~~-~-------------~~~~~-------------~-----------~~~~~~~~~~~~li~~~L~~  271 (362)
T 2bdw_A          230 FWDEDQHRLYAQIKA-G-------------AYDYP-------------S-----------PEWDTVTPEAKSLIDSMLTV  271 (362)
T ss_dssp             SCCSSHHHHHHHHHH-T-------------CCCCC-------------T-----------TGGGGSCHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHh-C-------------CCCCC-------------c-----------ccccCCCHHHHHHHHHHcCC
Confidence            998776554443321 1             01111             1           11246789999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccc
Q 004835          672 NPRLRISAEDALKHEFFAPC  691 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~  691 (728)
                      ||++|||+.|+|+||||...
T Consensus       272 dP~~R~t~~e~l~hp~~~~~  291 (362)
T 2bdw_A          272 NPKKRITADQALKVPWICNR  291 (362)
T ss_dssp             SGGGSCCHHHHTTSHHHHTH
T ss_pred             ChhhCcCHHHHhcCcccCCC
Confidence            99999999999999999753

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.1e-44  Score=399.17  Aligned_cols=265  Identities=23%  Similarity=0.293  Sum_probs=214.3

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ....++|++.+.||+|+||.||+|+++.+|+.||||++.+.     .....+.+|+.++..+.|++ |++++++|.+.+.
T Consensus        57 ~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~-Iv~l~~~~~~~~~  135 (412)
T 2vd5_A           57 RLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRW-ITQLHFAFQDENY  135 (412)
T ss_dssp             SCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTT-BCCEEEEEECSSE
T ss_pred             cCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCC-eeeEEEEEeeCCE
Confidence            34567999999999999999999999999999999998642     23345789999999999998 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccC
Q 004835          272 DCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFD  347 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~  347 (728)
                      .|+||||+.++.+..+..    .+++..++.++.||+.||.|||++|||||||||+||||+ .++.+||+|||+++....
T Consensus       136 ~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld-~~g~vkL~DFGla~~~~~  214 (412)
T 2vd5_A          136 LYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLD-RCGHIRLADFGSCLKLRA  214 (412)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTSCEEECCCTTCEECCT
T ss_pred             EEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeec-CCCCEEEeechhheeccC
Confidence            999999999988877653    489999999999999999999999999999999999999 667899999999975210


Q ss_pred             CCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccc
Q 004835          348 GSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAK  427 (728)
Q Consensus       348 ~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~  427 (728)
                      ...                                                                             
T Consensus       215 ~~~-----------------------------------------------------------------------------  217 (412)
T 2vd5_A          215 DGT-----------------------------------------------------------------------------  217 (412)
T ss_dssp             TSC-----------------------------------------------------------------------------
T ss_pred             CCc-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             cccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCC
Q 004835          428 EATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAG  507 (728)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (728)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (412)
T 2vd5_A          218 --------------------------------------------------------------------------------  217 (412)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhc------cCCCCCchhHHHHHHH
Q 004835          508 LMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFR------SQHQGPKLDIWSAGVT  581 (728)
Q Consensus       508 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~------~~~~~~~~DIWSlG~i  581 (728)
                                                            ......+||+.|+|||++.+      ...|+.++|||||||+
T Consensus       218 --------------------------------------~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvi  259 (412)
T 2vd5_A          218 --------------------------------------VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVF  259 (412)
T ss_dssp             --------------------------------------EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHH
T ss_pred             --------------------------------------cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHH
Confidence                                                  00113469999999999963      3447999999999999


Q ss_pred             HHHHhcCCCCCCCCChHHHH-HHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchh
Q 004835          582 LLYLMIGRTPFFGDPEQNIK-DIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS  660 (728)
Q Consensus       582 l~eLltG~~PF~~~~~~~l~-~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (728)
                      +|||++|++||.+.+...+. .|+....                                      ....+.+...++++
T Consensus       260 lyelltG~~Pf~~~~~~~~~~~i~~~~~--------------------------------------~~~~p~~~~~~s~~  301 (412)
T 2vd5_A          260 AYEMFYGQTPFYADSTAETYGKIVHYKE--------------------------------------HLSLPLVDEGVPEE  301 (412)
T ss_dssp             HHHHHHSSCTTCCSSHHHHHHHHHTHHH--------------------------------------HCCCC----CCCHH
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHhccc--------------------------------------CcCCCccccCCCHH
Confidence            99999999999987765433 3321000                                      00011223468899


Q ss_pred             HHHHHHHhcccCCCCC---CCHHHHhcCCCCccchhcchH
Q 004835          661 LFDLVDKCLTVNPRLR---ISAEDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       661 l~dLi~~~L~~dP~~R---pta~e~L~Hp~f~~~~~~~~~  697 (728)
                      +.+||.+||+ +|.+|   ++++|+++||||+++.+....
T Consensus       302 ~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpff~~i~w~~l~  340 (412)
T 2vd5_A          302 ARDFIQRLLC-PPETRLGRGGAGDFRTHPFFFGLDWDGLR  340 (412)
T ss_dssp             HHHHHHTTSS-CGGGCTTTTTHHHHHTSGGGTTCCSTTST
T ss_pred             HHHHHHHHcC-ChhhcCCCCCHHHHhcCCCcCCCCHHHHh
Confidence            9999999999 99998   589999999999999876543

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=3.9e-44  Score=391.67  Aligned_cols=283  Identities=27%  Similarity=0.405  Sum_probs=209.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeC------
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCG------  269 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~------  269 (728)
                      .++|++.+.||+|+||.||+|.+..+|+.||||++....    ....+.+|+.+++.++|+| |+++++++...      
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~~~~~~~~~~~~~~~  106 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHEN-VIGLLDVFTPARSLEEF  106 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTT-BCCCSEEECSCSSGGGC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEecCCccccC
Confidence            368999999999999999999999999999999986532    2356779999999999999 99999998654      


Q ss_pred             CeeEEEEeccCCCChHHHh-hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          270 DSDCFVLEHVKHDRPEVLK-KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~-~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      ...|+|+||+++.+...+. ..+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+++.... 
T Consensus       107 ~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~-~~~~~kL~DFG~a~~~~~-  184 (367)
T 2fst_X          107 NDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVN-EDCELKILDFGLARHTAD-  184 (367)
T ss_dssp             CCCEEEEECCCEECC-----CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTCCEEECC----------
T ss_pred             CeEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEEC-CCCCEEEeeccccccccc-
Confidence            5689999999655444333 3489999999999999999999999999999999999999 667899999999864100 


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (367)
T 2fst_X          185 --------------------------------------------------------------------------------  184 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (367)
T 2fst_X          185 --------------------------------------------------------------------------------  184 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                            .....+||++|+|||++.+...++.++|||||||++|+|++|
T Consensus       185 --------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g  226 (367)
T 2fst_X          185 --------------------------------------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTG  226 (367)
T ss_dssp             --------------------------------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhC
Confidence                                                  001346899999999997766689999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHH
Q 004835          589 RTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK  667 (728)
Q Consensus       589 ~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~  667 (728)
                      ++||.+.+. +++..+++..|.+....+..+....   ....  ...++......|..       .....++.+.+||.+
T Consensus       227 ~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~dLl~~  294 (367)
T 2fst_X          227 RTLFPGTDHIDQLKLILRLVGTPGAELLKKISSES---ARNY--IQSLTQMPKMNFAN-------VFIGANPLAVDLLEK  294 (367)
T ss_dssp             SCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHH---HHHH--HHTSCCCCCCCHHH-------HTTTCCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHH---HHHH--HhccCCCCCCCHHH-------HCCCCCHHHHHHHHH
Confidence            999998776 6788899999986543332221100   0000  00111111111211       123568899999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          668 CLTVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       668 ~L~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      ||.+||++|||++|+|+||||+.++...
T Consensus       295 mL~~dP~~R~t~~e~L~hp~~~~~~~~~  322 (367)
T 2fst_X          295 MLVLDSDKRITAAQALAHAYFAQYHDPD  322 (367)
T ss_dssp             HSCSSGGGSCCHHHHHTSGGGTTTCCGG
T ss_pred             hCCCCcccCcCHHHHhcChhhhhccCCC
Confidence            9999999999999999999999887654

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=5.6e-44  Score=420.26  Aligned_cols=270  Identities=21%  Similarity=0.306  Sum_probs=223.5

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+++|+++++||+|+||.||+|++..+++.||||++...     .....+..|..++..+.++++|+.++++|.+.+.+
T Consensus       338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~  417 (674)
T 3pfq_A          338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL  417 (674)
T ss_dssp             --CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEE
T ss_pred             ccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEE
Confidence            3578999999999999999999999999999999998742     34456788999999986666699999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      ||||||+.++.|..++.   .+++..++.|+.||+.||.|||++|||||||||+||||+ .++.+||+|||+|+......
T Consensus       418 ~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~-~~g~ikL~DFGla~~~~~~~  496 (674)
T 3pfq_A          418 YFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLD-SEGHIKIADFGMCKENIWDG  496 (674)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEEC-SSSCEEECCCTTCEECCCTT
T ss_pred             EEEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEc-CCCcEEEeecceeeccccCC
Confidence            99999999998877654   489999999999999999999999999999999999999 66789999999997411000


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       497 --------------------------------------------------------------------------------  496 (674)
T 3pfq_A          497 --------------------------------------------------------------------------------  496 (674)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       497 --------------------------------------------------------------------------------  496 (674)
T 3pfq_A          497 --------------------------------------------------------------------------------  496 (674)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                          ......+||+.|+|||++.+. .|+.++|||||||++|||++|+
T Consensus       497 ------------------------------------~~~~~~~GT~~Y~APE~l~~~-~~~~~~DvwSlGvilyelltG~  539 (674)
T 3pfq_A          497 ------------------------------------VTTKTFCGTPDYIAPEIIAYQ-PYGKSVDWWAFGVLLYEMLAGQ  539 (674)
T ss_dssp             ------------------------------------CCBCCCCSCSSSCCHHHHTCC-CBSTHHHHHHHHHHHHHHHHSS
T ss_pred             ------------------------------------cccccccCCCcccCHhhhcCC-CCCccceEechHHHHHHHHcCC
Confidence                                                011245799999999999555 4699999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          590 TPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       590 ~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      +||.+.+...+...+.                                          .....++..+++++.+||.+||
T Consensus       540 ~Pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~~li~~lL  577 (674)
T 3pfq_A          540 APFEGEDEDELFQSIM------------------------------------------EHNVAYPKSMSKEAVAICKGLM  577 (674)
T ss_dssp             CSSCCSSHHHHHHHHH------------------------------------------SSCCCCCTTSCHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHH------------------------------------------hCCCCCCccCCHHHHHHHHHHc
Confidence            9999887755443221                                          1223445678899999999999


Q ss_pred             ccCCCCCCCH-----HHHhcCCCCccchhcchHhHhhhccccc
Q 004835          670 TVNPRLRISA-----EDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       670 ~~dP~~Rpta-----~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      ..||++||++     +|+++||||+++.+....++.+.+...+
T Consensus       578 ~~dP~~R~~~~~~~~~ei~~h~ff~~i~w~~l~~~~~~pp~~p  620 (674)
T 3pfq_A          578 TKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKP  620 (674)
T ss_dssp             CSSSTTCTTCSTTHHHHHHSSGGGSSCCHHHHTTTCSCCSCCC
T ss_pred             cCCHHHCCCCCCCcHHHHhcCccccCCCHHHHHhCCCCCCCCC
Confidence            9999999997     9999999999999876666555544433

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=8.8e-44  Score=396.74  Aligned_cols=286  Identities=23%  Similarity=0.376  Sum_probs=216.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcC------CCCceEEecceEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFG------GKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~------h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+|++.+.||+|+||+||+|.+..+++.||||++.... ....+.+|+.++..+.      |+| |+.+++++......
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~-iv~~~~~~~~~~~~  174 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMN-VIHMLENFTFRNHI  174 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSC-BCCEEEEEEETTEE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcC-EEEEEeecccCCeE
Confidence            358999999999999999999999999999999987643 2356778999988874      446 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC-ceEEEeeeccccccC
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV-KGYLIDFNLAMVGFD  347 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~-~~kL~DFGlA~~~~~  347 (728)
                      |+||||+.+++.+.+..    .+++..++.++.||+.||.|||++|||||||||+||||+.++. .+||+|||+|.....
T Consensus       175 ~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~  254 (429)
T 3kvw_A          175 CMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQ  254 (429)
T ss_dssp             EEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETTC
T ss_pred             EEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccceecCC
Confidence            99999998766655543    2889999999999999999999999999999999999994432 299999999864110


Q ss_pred             CCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccc
Q 004835          348 GSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAK  427 (728)
Q Consensus       348 ~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~  427 (728)
                                                                                                      
T Consensus       255 --------------------------------------------------------------------------------  254 (429)
T 3kvw_A          255 --------------------------------------------------------------------------------  254 (429)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCC
Q 004835          428 EATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAG  507 (728)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (728)
                                                                                                      
T Consensus       255 --------------------------------------------------------------------------------  254 (429)
T 3kvw_A          255 --------------------------------------------------------------------------------  254 (429)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhc
Q 004835          508 LMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI  587 (728)
Q Consensus       508 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLlt  587 (728)
                                                             .....+||+.|+|||++.+.. ++.++|||||||++|||++
T Consensus       255 ---------------------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlG~il~ellt  294 (429)
T 3kvw_A          255 ---------------------------------------RVYTYIQSRFYRAPEVILGAR-YGMPIDMWSLGCILAELLT  294 (429)
T ss_dssp             ---------------------------------------CCCSSCSCGGGCCHHHHHTBC-CCTHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------cccccCCCCCccChHHHhCCC-CCchHHHHhHHHHHHHHHh
Confidence                                                   001346899999999997665 6999999999999999999


Q ss_pred             CCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCC-----CCCcchhhc-----------------ccCCCCCCchhhh
Q 004835          588 GRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRE-----SSFPEDLYA-----------------AKSLPPINLPEWC  644 (728)
Q Consensus       588 G~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~-----~~~~~~~~~-----------------~~~~~~~~~~~~~  644 (728)
                      |.+||.+.+. +.+..+++.+|.+....+.......     ..++.....                 ...........|.
T Consensus       295 G~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (429)
T 3kvw_A          295 GYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWG  374 (429)
T ss_dssp             SSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhH
Confidence            9999998776 6788889999975544332211100     011100000                 0000001111222


Q ss_pred             hhhccCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccch
Q 004835          645 KLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       645 ~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      ..      +....++.+.+||.+||.+||++||||+|||+||||+...
T Consensus       375 ~~------l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hpw~~~~~  416 (429)
T 3kvw_A          375 NA------LKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRRL  416 (429)
T ss_dssp             HH------TTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTTC---
T ss_pred             hh------ccccchHHHHHHHHHHCCCChhhCCCHHHHhCChhhccCC
Confidence            11      2335578899999999999999999999999999999753

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.6e-44  Score=384.98  Aligned_cols=284  Identities=26%  Similarity=0.380  Sum_probs=215.7

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-------chhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ..++|++.+.||+|+||.||+|++..+|+.||||++....       ....+.+|+.++..++|+| |+++++++.....
T Consensus         8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~   86 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPN-IIGLLDAFGHKSN   86 (346)
T ss_dssp             -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTT-BCCEEEEECCTTC
T ss_pred             HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCC-CCeEEEEEeeCCc
Confidence            3568999999999999999999999999999999986421       1346789999999999999 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          272 DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      .|+||||+.+++...+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++......
T Consensus        87 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~-~~~~~kl~Dfg~a~~~~~~  165 (346)
T 1ua2_A           87 ISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLD-ENGVLKLADFGLAKSFGSP  165 (346)
T ss_dssp             CEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTCCEEECCCGGGSTTTSC
T ss_pred             eEEEEEcCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEc-CCCCEEEEecccceeccCC
Confidence            999999999865555543   388999999999999999999999999999999999999 6678999999998742100


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                      .                                                                               
T Consensus       166 ~-------------------------------------------------------------------------------  166 (346)
T 1ua2_A          166 N-------------------------------------------------------------------------------  166 (346)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (346)
T 1ua2_A          167 --------------------------------------------------------------------------------  166 (346)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                           ......+||+.|+|||++.+...++.++|||||||++|+|++|
T Consensus       167 -------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g  209 (346)
T 1ua2_A          167 -------------------------------------RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLR  209 (346)
T ss_dssp             -------------------------------------CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHC
Confidence                                                 0011346899999999997766679999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHH
Q 004835          589 RTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK  667 (728)
Q Consensus       589 ~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~  667 (728)
                      .+||.+... +.+..+++..|.+....+....    ..++. ......+...   +.       .+...++.++.+||.+
T Consensus       210 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~---~~-------~~~~~~~~~~~~li~~  274 (346)
T 1ua2_A          210 VPFLPGDSDLDQLTRIFETLGTPTEEQWPDMC----SLPDY-VTFKSFPGIP---LH-------HIFSAAGDDLLDLIQG  274 (346)
T ss_dssp             SCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTT----SSTTC-CCCCCCCCCC---HH-------HHCTTCCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHcCCCChhhhhhhc----cCccc-ccccccCCCC---hH-------HhhccCCHHHHHHHHH
Confidence            999998776 5677777777754321110000    00000 0000111111   11       1235678999999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          668 CLTVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       668 ~L~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      ||..||++|||+.|+|+||||++.....
T Consensus       275 ~L~~dP~~Rpt~~ell~h~~f~~~~~~~  302 (346)
T 1ua2_A          275 LFLFNPCARITATQALKMKYFSNRPGPT  302 (346)
T ss_dssp             HHCSSTTTSCCHHHHHTSGGGTSSSCCC
T ss_pred             HhccChhhCCCHHHHhcChhhhcCCCCC
Confidence            9999999999999999999999866543

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=2.9e-44  Score=391.98  Aligned_cols=289  Identities=24%  Similarity=0.310  Sum_probs=212.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCC-----
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD-----  270 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~-----  270 (728)
                      .++|++.+.||+|+||.||+|.+..+|+.||||++....    ....+.+|+.+++.++|+| |+++++++....     
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~~~  102 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN-IIGLLNVFTPQKSLEEF  102 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTT-BCCEEEEECSCCSTTTC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCC-ccceEEeeccccccccc
Confidence            578999999999999999999999999999999986532    2345779999999999999 999999987654     


Q ss_pred             -eeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          271 -SDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       271 -~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                       ..|+||||+.+++...+...+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++...... 
T Consensus       103 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~-~~~~~kl~Dfg~a~~~~~~-  180 (371)
T 2xrw_A          103 QDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK-SDCTLKILDFGLARTAGTS-  180 (371)
T ss_dssp             CEEEEEEECCSEEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTSCEEECCCCC--------
T ss_pred             cceEEEEEcCCCCHHHHHhhccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEc-CCCCEEEEEeecccccccc-
Confidence             7899999999887777767799999999999999999999999999999999999999 6678999999998641100 


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (371)
T 2xrw_A          181 --------------------------------------------------------------------------------  180 (371)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (371)
T 2xrw_A          181 --------------------------------------------------------------------------------  180 (371)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                          ......+||+.|+|||++.+.. ++.++|||||||++|+|++|+
T Consensus       181 ------------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~el~~g~  223 (371)
T 2xrw_A          181 ------------------------------------FMMTPYVVTRYYRAPEVILGMG-YKENVDIWSVGCIMGEMIKGG  223 (371)
T ss_dssp             ---------------------------------------------CTTCCHHHHTTCC-CCTTHHHHHHHHHHHHHHHSS
T ss_pred             ------------------------------------cccCCceecCCccCHHHhcCCC-CCchHhHHHHHHHHHHHHhCC
Confidence                                                0011346899999999996654 699999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhc-----cCCcccccCchhHHH
Q 004835          590 TPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLIT-----KRPDFLEVIPSSLFD  663 (728)
Q Consensus       590 ~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~d  663 (728)
                      .||.+.+. +.+..+++.+|.+.......+.....   ...   ...+......+.....     ...+.....+.++.+
T Consensus       224 ~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (371)
T 2xrw_A          224 VLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVR---TYV---ENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARD  297 (371)
T ss_dssp             CSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHH---HHH---HSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHH---HHH---hhCccccccchhhhcccccCcccccccccccHHHHH
Confidence            99998776 56777777777643222111100000   000   0000000011111100     001112234678999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          664 LVDKCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       664 Li~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      ||.+||.+||++|||++|+|+||||+.....
T Consensus       298 li~~mL~~dP~~R~t~~e~l~hp~~~~~~~~  328 (371)
T 2xrw_A          298 LLSKMLVIDASKRISVDEALQHPYINVWYDP  328 (371)
T ss_dssp             HHHHHSCSSGGGSCCHHHHHHSHHHHTTCCH
T ss_pred             HHHHHCcCChhhCCCHHHHhCCcchhhhcCc
Confidence            9999999999999999999999999875544

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.6e-44  Score=398.27  Aligned_cols=292  Identities=22%  Similarity=0.311  Sum_probs=207.6

Q ss_pred             CeeE-EEEecccCceEEEEEEEc--CCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEe--CCeeEEEE
Q 004835          202 SFIV-EEEEGSGGYGTVYRARRK--NDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKC--GDSDCFVL  276 (728)
Q Consensus       202 ~y~i-~~~LG~G~fG~Vy~a~~~--~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--~~~~~LV~  276 (728)
                      .|.+ .++||+|+||+||+|++.  .+++.||||++........+.+|+.+|++++|+| |+++++++..  ....|+||
T Consensus        21 ~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~~~lv~   99 (405)
T 3rgf_A           21 LFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPN-VISLQKVFLSHADRKVWLLF   99 (405)
T ss_dssp             HEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTT-BCCCCEEEEETTTTEEEEEE
T ss_pred             hhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCC-eeeEeeEEecCCCCeEEEEE
Confidence            4665 457999999999999976  4688999999987776778889999999999999 9999999954  67899999


Q ss_pred             eccCCCChHHHhh-----------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee---cCCCceEEEeeecc
Q 004835          277 EHVKHDRPEVLKK-----------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS---CKAVKGYLIDFNLA  342 (728)
Q Consensus       277 E~~~~~~l~~l~~-----------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld---~~~~~~kL~DFGlA  342 (728)
                      ||+.++++..+..           .+++..++.|+.||+.||.|||++||+||||||+||||.   ...+.+||+|||+|
T Consensus       100 e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a  179 (405)
T 3rgf_A          100 DYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFA  179 (405)
T ss_dssp             ECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCC
T ss_pred             eCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCc
Confidence            9999876665531           288999999999999999999999999999999999993   25578999999999


Q ss_pred             ccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCC
Q 004835          343 MVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSG  422 (728)
Q Consensus       343 ~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~  422 (728)
                      +.......                                                                        
T Consensus       180 ~~~~~~~~------------------------------------------------------------------------  187 (405)
T 3rgf_A          180 RLFNSPLK------------------------------------------------------------------------  187 (405)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             eecCCCCc------------------------------------------------------------------------
Confidence            75210000                                                                        


Q ss_pred             ccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcc
Q 004835          423 ITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIA  502 (728)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (728)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (405)
T 3rgf_A          188 --------------------------------------------------------------------------------  187 (405)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHH
Q 004835          503 VAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTL  582 (728)
Q Consensus       503 ~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il  582 (728)
                                                               ........+||+.|+|||++.+...++.++||||||||+
T Consensus       188 -----------------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il  226 (405)
T 3rgf_A          188 -----------------------------------------PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIF  226 (405)
T ss_dssp             --------------------------------------------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred             -----------------------------------------ccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHH
Confidence                                                     000112456999999999998777789999999999999


Q ss_pred             HHHhcCCCCCCCCCh----------HHHHHHHHHhCCchHHHHHHhccCCCCCcchh--hcccCCCCCCchhhhhhhccC
Q 004835          583 LYLMIGRTPFFGDPE----------QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDL--YAAKSLPPINLPEWCKLITKR  650 (728)
Q Consensus       583 ~eLltG~~PF~~~~~----------~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  650 (728)
                      |+|++|++||.+...          +++..++..+|.+....+..+.... .+....  .............|..     
T Consensus       227 ~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----  300 (405)
T 3rgf_A          227 AELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMP-EHSTLMKDFRRNTYTNCSLIKYME-----  300 (405)
T ss_dssp             HHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGST-THHHHHHHCCGGGGTTCCHHHHHH-----
T ss_pred             HHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCc-chhhhhhhccccCCCcchhhhhHh-----
Confidence            999999999976543          6788888888864321111110000 000000  0000001111111111     


Q ss_pred             CcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          651 PDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       651 ~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                       ......+..+.+||.+||.+||.+||||+|||+||||.+....
T Consensus       301 -~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f~~~~~~  343 (405)
T 3rgf_A          301 -KHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLP  343 (405)
T ss_dssp             -TTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTSSSCC
T ss_pred             -hcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhccCCCC
Confidence             1112347889999999999999999999999999999876543

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=2.2e-43  Score=385.10  Aligned_cols=283  Identities=27%  Similarity=0.444  Sum_probs=221.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeCCee----
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD----  272 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~----  272 (728)
                      ++|.+.+.||+|+||.||+|.+..+|+.||||++.....    ...+.+|+.+++.++|+| |+++++++......    
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHEN-VIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTT-BCCCSEEECSCSSSTTCC
T ss_pred             ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCC-chhhhhheeccCCcccce
Confidence            689999999999999999999999999999999875422    356789999999999999 99999999877654    


Q ss_pred             --EEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          273 --CFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       273 --~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                        |+||||+.+++...+...+++..+..++.||+.||.|||++||+||||||+||||+ .++.+||+|||++.....   
T Consensus       121 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~-~~~~~kL~Dfg~a~~~~~---  196 (371)
T 4exu_A          121 DFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVN-EDCELKILDFGLARHADA---  196 (371)
T ss_dssp             CCEEEEECCCEEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTCCEEECSTTCC--------
T ss_pred             eEEEEEccccccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEEC-CCCCEEEEecCccccccc---
Confidence              99999999766555556699999999999999999999999999999999999999 667899999999863100   


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (371)
T 4exu_A          197 --------------------------------------------------------------------------------  196 (371)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (371)
T 4exu_A          197 --------------------------------------------------------------------------------  196 (371)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                          .....+||+.|+|||++.+...++.++|||||||++|+|++|+.
T Consensus       197 ------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~  240 (371)
T 4exu_A          197 ------------------------------------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKT  240 (371)
T ss_dssp             ---------------------------------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------------CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCC
Confidence                                                00134589999999999775668999999999999999999999


Q ss_pred             CCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          591 PFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      ||.+.+. +.+..++...|.+.......+....   ....  ...++......|.       .....+++.+.+||.+||
T Consensus       241 pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~li~~~L  308 (371)
T 4exu_A          241 LFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKA---AKSY--IQSLPQTPRKDFT-------QLFPRASPQAADLLEKML  308 (371)
T ss_dssp             SCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHH---HHHH--HHHSCCCCCCCHH-------HHSTTSCHHHHHHHHHHS
T ss_pred             CCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhh---hhhh--hhccCCCcchhHH-------HhccccChHHHHHHHHHC
Confidence            9998775 6788888888875443322211000   0000  0001111111111       123457899999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchhcch
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      .+||++|||+.|+|+||||+++.....
T Consensus       309 ~~dP~~Rpt~~ell~hp~f~~~~~~~~  335 (371)
T 4exu_A          309 ELDVDKRLTAAQALTHPFFEPFRDPEE  335 (371)
T ss_dssp             CSCTTTSCCHHHHHTSGGGTTTCCGGG
T ss_pred             CCChhhcCCHHHHhcCcccccCCCccc
Confidence            999999999999999999998775543

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=1.1e-43  Score=380.18  Aligned_cols=290  Identities=26%  Similarity=0.373  Sum_probs=222.7

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..+++|++.+.||+|+||.||+|++..+|+.||||++.....    ...+.+|+.++.+++|+| |+++++++...+..|
T Consensus        22 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~  100 (331)
T 4aaa_A           22 QSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHEN-LVNLLEVCKKKKRWY  100 (331)
T ss_dssp             BCGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEEETTEEE
T ss_pred             hhhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCC-EeeEEEEeecCCEEE
Confidence            356899999999999999999999999999999998864432    344678999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.++++..+.   ..+++..+..++.||+.||.|||++||+||||||+||||+ .++.+||+|||++....... 
T Consensus       101 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~~-  178 (331)
T 4aaa_A          101 LVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVS-QSGVVKLCDFGFARTLAAPG-  178 (331)
T ss_dssp             EEEECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTSCEEECCCTTC--------
T ss_pred             EEEecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEc-CCCcEEEEeCCCceeecCCc-
Confidence            999999999888764   3489999999999999999999999999999999999998 66789999999986421000 


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (331)
T 4aaa_A          179 --------------------------------------------------------------------------------  178 (331)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (331)
T 4aaa_A          179 --------------------------------------------------------------------------------  178 (331)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                         .......||+.|+|||++.+...++.++|||||||++|+|++|+.
T Consensus       179 -----------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~  223 (331)
T 4aaa_A          179 -----------------------------------EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEP  223 (331)
T ss_dssp             ----------------------------------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             -----------------------------------cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCC
Confidence                                               000133589999999999776567999999999999999999999


Q ss_pred             CCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          591 PFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      ||.+... +.+..++...|............. ..+     ....++.......      .......+++.+.+||.+||
T Consensus       224 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~------~~~~~~~~~~~l~~li~~~L  291 (331)
T 4aaa_A          224 LFPGDSDIDQLYHIMMCLGNLIPRHQELFNKN-PVF-----AGVRLPEIKEREP------LERRYPKLSEVVIDLAKKCL  291 (331)
T ss_dssp             SCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHC-GGG-----TTCCCCCCSSCCC------HHHHSTTSCHHHHHHHHHHT
T ss_pred             CCCCCCcHHHHHHHHHHhCCCChhhhhHhhhc-ccc-----ccccCccccccch------hhhcccchhHHHHHHHHHHh
Confidence            9998776 567777777776322221111100 000     0001111100000      00122457899999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchhcchH
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~~~~~  697 (728)
                      ..||++|||+.|+|+||||+......+-
T Consensus       292 ~~dP~~Rpt~~ell~hp~f~~~~~~~~~  319 (331)
T 4aaa_A          292 HIDPDKRPFCAELLHHDFFQMDGFAERF  319 (331)
T ss_dssp             CSSGGGSCCGGGGGGSHHHHGGGHHHHH
T ss_pred             ccCcccCCCHHHHhcCchhccCChhhhh
Confidence            9999999999999999999976544433

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.6e-43  Score=382.76  Aligned_cols=294  Identities=27%  Similarity=0.421  Sum_probs=221.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-------------hhHHHHHHHHHHhcCCCCceEEecceE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-------------KHYVSNELRMLERFGGKNFIIKYEGCF  266 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-------------~~~~~~Ei~iL~~L~h~n~Ivkl~~~~  266 (728)
                      .++|.+.+.||+|+||.||+|.+. +|+.||||++.....             ...+.+|+.++.+++|+| |+++++++
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~   98 (362)
T 3pg1_A           21 QSPYTVQRFISSGSYGAVCAGVDS-EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPN-ILGLRDIF   98 (362)
T ss_dssp             TCSCEEEEEEEEETTEEEEEEECT-TSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTT-BCCCSEEE
T ss_pred             ccceEEeEEeccCCCEEEEEEECC-CCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcC-ccceeeeE
Confidence            358999999999999999999986 499999998864211             256889999999999999 99999998


Q ss_pred             Ee-----CCeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEe
Q 004835          267 KC-----GDSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLID  338 (728)
Q Consensus       267 ~~-----~~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~D  338 (728)
                      ..     ....|+||||+.++++..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|
T Consensus        99 ~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~-~~~~~kl~D  177 (362)
T 3pg1_A           99 VHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLA-DNNDITICD  177 (362)
T ss_dssp             EECCTTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTCCEEECC
T ss_pred             EeccCCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEc-CCCCEEEEe
Confidence            54     346899999999877766654   389999999999999999999999999999999999998 667899999


Q ss_pred             eeccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCC
Q 004835          339 FNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGA  418 (728)
Q Consensus       339 FGlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~  418 (728)
                      ||++......                                                                      
T Consensus       178 fg~~~~~~~~----------------------------------------------------------------------  187 (362)
T 3pg1_A          178 FNLAREDTAD----------------------------------------------------------------------  187 (362)
T ss_dssp             TTC-----------------------------------------------------------------------------
T ss_pred             cCcccccccc----------------------------------------------------------------------
Confidence            9998631100                                                                      


Q ss_pred             CCCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCC
Q 004835          419 DGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHS  498 (728)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  498 (728)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (362)
T 3pg1_A          188 --------------------------------------------------------------------------------  187 (362)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHH
Q 004835          499 NGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSA  578 (728)
Q Consensus       499 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSl  578 (728)
                                                                     .......||+.|+|||++.+...++.++|||||
T Consensus       188 -----------------------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~Diwsl  220 (362)
T 3pg1_A          188 -----------------------------------------------ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSA  220 (362)
T ss_dssp             -------------------------------------------------------CGGGCCHHHHTTCTTCCTHHHHHHH
T ss_pred             -----------------------------------------------cccceecccceecCcHHhcCCCCCCcHhHHHhH
Confidence                                                           001134589999999999775667999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccC
Q 004835          579 GVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVI  657 (728)
Q Consensus       579 G~il~eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  657 (728)
                      ||++|+|++|+.||.+... +.+..++...|.+............  +  ...............|.       .+...+
T Consensus       221 G~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~-------~~~~~~  289 (362)
T 3pg1_A          221 GCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPS--A--RDYLRNSLSNVPARAWT-------AVVPTA  289 (362)
T ss_dssp             HHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHH--H--HHHTTTCCCCCCCCCHH-------HHSTTS
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchh--h--hHHHHhhcccCChhhHH-------hhCCCC
Confidence            9999999999999998776 5678888888876544432211100  0  00000111111112222       123457


Q ss_pred             chhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhcchHhHhhhcc
Q 004835          658 PSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQG  704 (728)
Q Consensus       658 ~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~~~~~~  704 (728)
                      ++.+.+||.+||.+||++|||+.|+|+||||+++.........+...
T Consensus       290 ~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~~~~~~~~~~~  336 (362)
T 3pg1_A          290 DPVALDLIAKMLEFNPQRRISTEQALRHPYFESLFDPLDLTEGLSER  336 (362)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGTTTCCGGGGTTTCCCC
T ss_pred             CHHHHHHHHHHhcCChhhCCCHHHHHcCchhhhccCccccccccccc
Confidence            88999999999999999999999999999999987776666554433

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=2.9e-43  Score=375.35  Aligned_cols=256  Identities=26%  Similarity=0.378  Sum_probs=210.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--------chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      +.|++.+.||+|+||.||+|++..+|+.||||++....        ....+.+|+.++..+.|+| |+++++++......
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHN-VITLHDVYENRTDV   90 (321)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEE
T ss_pred             ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCC-cceEEEEEecCCEE
Confidence            57999999999999999999999999999999986432        2456889999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC---ceEEEeeecccccc
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV---KGYLIDFNLAMVGF  346 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~---~~kL~DFGlA~~~~  346 (728)
                      |+||||+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+|||++.++.   .++|+|||++....
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~  170 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE  170 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECC
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCccceecC
Confidence            99999999988877654   3789999999999999999999999999999999999984442   79999999987421


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ..                                                                              
T Consensus       171 ~~------------------------------------------------------------------------------  172 (321)
T 2a2a_A          171 DG------------------------------------------------------------------------------  172 (321)
T ss_dssp             TT------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (321)
T 2a2a_A          173 --------------------------------------------------------------------------------  172 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                             .......||+.|+|||++.+.. ++.++|||||||++|+|+
T Consensus       173 ---------------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~Di~slG~il~~l~  212 (321)
T 2a2a_A          173 ---------------------------------------VEFKNIFGTPEFVAPEIVNYEP-LGLEADMWSIGVITYILL  212 (321)
T ss_dssp             ---------------------------------------CCCCCCCSCGGGCCHHHHTTCC-CCTHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------ccccccCCCCCccCcccccCCC-CCCccccHHHHHHHHHHH
Confidence                                                   0001335899999999995544 699999999999999999


Q ss_pred             cCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          587 IGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       587 tG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      +|..||.+.....+...+..              ....++                        ..++..++..+.+||.
T Consensus       213 ~g~~pf~~~~~~~~~~~i~~--------------~~~~~~------------------------~~~~~~~~~~~~~li~  254 (321)
T 2a2a_A          213 SGASPFLGDTKQETLANITS--------------VSYDFD------------------------EEFFSHTSELAKDFIR  254 (321)
T ss_dssp             HSCCSSCCSSHHHHHHHHHT--------------TCCCCC------------------------HHHHTTCCHHHHHHHH
T ss_pred             HCCCCCCCCCHHHHHHHHHh--------------cccccC------------------------hhhhcccCHHHHHHHH
Confidence            99999988776543332210              000111                        1223467889999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccchh
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      +||..||++|||+.|+|+||||+++.+
T Consensus       255 ~~l~~dp~~Rps~~e~l~hp~~~~~~~  281 (321)
T 2a2a_A          255 KLLVKETRKRLTIQEALRHPWITPVDN  281 (321)
T ss_dssp             TTSCSSTTTSCCHHHHHHSTTTSCSSH
T ss_pred             HHcCCChhhCcCHHHHhcCccccCCCc
Confidence            999999999999999999999998764

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1.5e-43  Score=383.77  Aligned_cols=144  Identities=30%  Similarity=0.358  Sum_probs=120.4

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      .+.|++.+.||+|+||.||+|++..+++.||||++......+.+.+|+.++.++.|+| |+++++++......|+||||+
T Consensus        52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~lv~e~~  130 (349)
T 2w4o_A           52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPN-IIKLKEIFETPTEISLVLELV  130 (349)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTT-BCCEEEEEECSSEEEEEECCC
T ss_pred             cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCC-CcceeeeEecCCeEEEEEEeC
Confidence            4679999999999999999999999999999999987666677889999999999999 999999999999999999999


Q ss_pred             CCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec--CCCceEEEeeecccc
Q 004835          280 KHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC--KAVKGYLIDFNLAMV  344 (728)
Q Consensus       280 ~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~--~~~~~kL~DFGlA~~  344 (728)
                      .++.+..+..   .+++..++.++.||+.||.|||++||+||||||+|||++.  .++.+||+|||++..
T Consensus       131 ~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~  200 (349)
T 2w4o_A          131 TGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKI  200 (349)
T ss_dssp             CSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC----
T ss_pred             CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccc
Confidence            9988866553   3889999999999999999999999999999999999973  367899999999874

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=8.7e-43  Score=373.01  Aligned_cols=253  Identities=23%  Similarity=0.358  Sum_probs=209.4

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      .|...+.||+|+||.||+|++..+|+.||||++...  ...+.+.+|+.++.+++|+| |+++++++..++..|+||||+
T Consensus        46 ~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~lv~e~~  124 (321)
T 2c30_A           46 LLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN-VVEMYKSYLVGEELWVLMEFL  124 (321)
T ss_dssp             HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTT-BCCEEEEEEETTEEEEEECCC
T ss_pred             hhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC-cceEEEEEEECCEEEEEEecC
Confidence            488888999999999999999989999999998643  34566889999999999999 999999999999999999999


Q ss_pred             CCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCCC
Q 004835          280 KHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG  357 (728)
Q Consensus       280 ~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~~  357 (728)
                      .++++..+..  .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++.......        
T Consensus       125 ~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~-~~~~~kl~Dfg~~~~~~~~~--------  195 (321)
T 2c30_A          125 QGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLT-LDGRVKLSDFGFCAQISKDV--------  195 (321)
T ss_dssp             CSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTCCEEECCCTTCEECCSSS--------
T ss_pred             CCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEC-CCCcEEEeeeeeeeecccCc--------
Confidence            9999888765  389999999999999999999999999999999999999 66789999999987421000        


Q ss_pred             CcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCccc
Q 004835          358 TKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAE  437 (728)
Q Consensus       358 t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (728)
                                                                                                      
T Consensus       196 --------------------------------------------------------------------------------  195 (321)
T 2c30_A          196 --------------------------------------------------------------------------------  195 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCch
Q 004835          438 RLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLS  517 (728)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  517 (728)
                                                                                                      
T Consensus       196 --------------------------------------------------------------------------------  195 (321)
T 2c30_A          196 --------------------------------------------------------------------------------  195 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCCh
Q 004835          518 DLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE  597 (728)
Q Consensus       518 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~~  597 (728)
                                                  ......+||+.|+|||++.+. .++.++|||||||++|+|++|+.||.+...
T Consensus       196 ----------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~slG~il~el~~g~~pf~~~~~  246 (321)
T 2c30_A          196 ----------------------------PKRKSLVGTPYWMAPEVISRS-LYATEVDIWSLGIMVIEMVDGEPPYFSDSP  246 (321)
T ss_dssp             ----------------------------CCBCCCCSCGGGCCHHHHTTC-CBCTHHHHHHHHHHHHHHHHSSCTTTTSCH
T ss_pred             ----------------------------cccccccCCccccCHhhhcCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence                                        001134689999999999554 469999999999999999999999988776


Q ss_pred             HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCC
Q 004835          598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRI  677 (728)
Q Consensus       598 ~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rp  677 (728)
                      ......+.....+                                       .......+++.+.+||.+||..||++||
T Consensus       247 ~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rp  287 (321)
T 2c30_A          247 VQAMKRLRDSPPP---------------------------------------KLKNSHKVSPVLRDFLERMLVRDPQERA  287 (321)
T ss_dssp             HHHHHHHHHSSCC---------------------------------------CCTTGGGSCHHHHHHHHHHSCSSTTTSC
T ss_pred             HHHHHHHhcCCCC---------------------------------------CcCccccCCHHHHHHHHHHccCChhhCc
Confidence            4433322110000                                       0011235788999999999999999999


Q ss_pred             CHHHHhcCCCCccch
Q 004835          678 SAEDALKHEFFAPCH  692 (728)
Q Consensus       678 ta~e~L~Hp~f~~~~  692 (728)
                      |+.|+|+||||.+..
T Consensus       288 s~~ell~hp~~~~~~  302 (321)
T 2c30_A          288 TAQELLDHPFLLQTG  302 (321)
T ss_dssp             CHHHHHTSGGGGGCC
T ss_pred             CHHHHhcChhhccCC
Confidence            999999999998654

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=5.5e-43  Score=364.71  Aligned_cols=259  Identities=26%  Similarity=0.393  Sum_probs=210.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      .++|++.+.||+|+||.||+|.+..+|+.||+|++....    ....+.+|+.++++++|+| |+++++++......|+|
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~v   83 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPN-IVRLHDSIQEESFHYLV   83 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCC-cCeEEEEEEcCCEEEEE
Confidence            368999999999999999999999999999999986543    2355778999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEeeeccccccCCCC
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~DFGlA~~~~~~~~  350 (728)
                      |||+.++.+.....   .+++..+..++.||+.||.|||++||+||||||+|||++.+  +..+||+|||++......  
T Consensus        84 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~--  161 (284)
T 3kk8_A           84 FDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS--  161 (284)
T ss_dssp             ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSS--
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccC--
Confidence            99999988755432   38999999999999999999999999999999999999733  234899999998642100  


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (284)
T 3kk8_A          162 --------------------------------------------------------------------------------  161 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (284)
T 3kk8_A          162 --------------------------------------------------------------------------------  161 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                         .......||+.|+|||++.+.. ++.++|||||||++|+|++|+.
T Consensus       162 -----------------------------------~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~l~~g~~  205 (284)
T 3kk8_A          162 -----------------------------------EAWHGFAGTPGYLSPEVLKKDP-YSKPVDIWACGVILYILLVGYP  205 (284)
T ss_dssp             -----------------------------------CBCCCSCSCGGGCCHHHHTTCC-BCTHHHHHHHHHHHHHHHHSSC
T ss_pred             -----------------------------------ccccCCCCCcCCcCchhhcCCC-CCcccchHHHHHHHHHHHHCCC
Confidence                                               0011345899999999996554 6999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.....+...+....              ..++                        ......+++.+.+||.+||.
T Consensus       206 pf~~~~~~~~~~~~~~~~--------------~~~~------------------------~~~~~~~~~~~~~li~~~l~  247 (284)
T 3kk8_A          206 PFWDEDQHRLYAQIKAGA--------------YDYP------------------------SPEWDTVTPEAKSLIDSMLT  247 (284)
T ss_dssp             SSCCSSHHHHHHHHHHTC--------------CCCC------------------------TTTTTTSCHHHHHHHHHHSC
T ss_pred             CCCCCchhHHHHHHHhcc--------------ccCC------------------------chhhcccCHHHHHHHHHHcc
Confidence            998877765544332111              0011                        01123578899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccchhcc
Q 004835          671 VNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      .||++|||+.|+|+||||++..+..
T Consensus       248 ~dp~~Rps~~~~l~h~~~~~~~~~~  272 (284)
T 3kk8_A          248 VNPKKRITADQALKVPWICNRERVA  272 (284)
T ss_dssp             SSTTTSCCHHHHTTSHHHHSCCCGG
T ss_pred             cChhhCCCHHHHhcCccccCChhHH
Confidence            9999999999999999998765443

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=2.6e-43  Score=388.49  Aligned_cols=257  Identities=26%  Similarity=0.367  Sum_probs=211.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      .+.|++.+.||+|+||.||+|.+..+|+.||+|++....  ....+.+|+.++..++|+| |+++++++......|+|||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~~~~~~~~~~~~~lv~E  128 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPK-LINLHDAFEDKYEMVLILE  128 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTT-BCCEEEEEECSSEEEEEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcC-CCeEEEEEEeCCEEEEEEE
Confidence            468999999999999999999999999999999987543  3446889999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec-CCCceEEEeeeccccccCCCCcc
Q 004835          278 HVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC-KAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       278 ~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~-~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |+.++.+..+..    .+++..+..++.||+.||.|||++||+||||||+|||++. ..+.+||+|||++.......   
T Consensus       129 ~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~---  205 (387)
T 1kob_A          129 FLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE---  205 (387)
T ss_dssp             CCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS---
T ss_pred             cCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCc---
Confidence            999988876653    4889999999999999999999999999999999999974 34679999999997521000   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       206 --------------------------------------------------------------------------------  205 (387)
T 1kob_A          206 --------------------------------------------------------------------------------  205 (387)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       206 --------------------------------------------------------------------------------  205 (387)
T 1kob_A          206 --------------------------------------------------------------------------------  205 (387)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                        .....+||+.|+|||++.+.. ++.++|||||||++|+|++|..||
T Consensus       206 ----------------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlG~il~elltg~~Pf  250 (387)
T 1kob_A          206 ----------------------------------IVKVTTATAEFAAPEIVDREP-VGFYTDMWAIGVLGYVLLSGLSPF  250 (387)
T ss_dssp             ----------------------------------CEEEECSSGGGCCHHHHTTCC-BCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             ----------------------------------ceeeeccCCCccCchhccCCC-CCCcccEeeHhHHHHHHHhCCCCC
Confidence                                              001235899999999996544 699999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       593 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      .+.+.......+...              ...+                        ....+..+++++.+||.+||..|
T Consensus       251 ~~~~~~~~~~~i~~~--------------~~~~------------------------~~~~~~~~s~~~~~li~~~L~~d  292 (387)
T 1kob_A          251 AGEDDLETLQNVKRC--------------DWEF------------------------DEDAFSSVSPEAKDFIKNLLQKE  292 (387)
T ss_dssp             CCSSHHHHHHHHHHC--------------CCCC------------------------CSSTTTTSCHHHHHHHHTTSCSS
T ss_pred             CCCCHHHHHHHHHhC--------------CCCC------------------------CccccccCCHHHHHHHHHHcCCC
Confidence            987764433322110              0001                        11223467899999999999999


Q ss_pred             CCCCCCHHHHhcCCCCccchh
Q 004835          673 PRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      |++|||+.|+|+||||+....
T Consensus       293 P~~Rpt~~ell~hp~~~~~~~  313 (387)
T 1kob_A          293 PRKRLTVHDALEHPWLKGDHS  313 (387)
T ss_dssp             GGGSCCHHHHHTSTTTSSCCT
T ss_pred             hhHCcCHHHHhhCccccCCcc
Confidence            999999999999999987543

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.7e-43  Score=368.46  Aligned_cols=252  Identities=23%  Similarity=0.366  Sum_probs=210.6

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|++.+.||+|+||.||+|.+..+++.||||++...     .....+.+|+.+++++.|+| |+++++++......|
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~   85 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPN-ILRLYGYFHDATRVY   85 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEE
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCC-CcchhheEecCCEEE
Confidence            567999999999999999999999999999999998542     23456889999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.++.+..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++......  
T Consensus        86 lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~-~~~~~~l~Dfg~~~~~~~~--  162 (279)
T 3fdn_A           86 LILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLG-SAGELKIADFGWSVHAPSS--  162 (279)
T ss_dssp             EEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEEC-TTSCEEECSCCEESCC-----
T ss_pred             EEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEc-CCCCEEEEeccccccCCcc--
Confidence            9999999988766553   489999999999999999999999999999999999998 6678999999998531000  


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (279)
T 3fdn_A          163 --------------------------------------------------------------------------------  162 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (279)
T 3fdn_A          163 --------------------------------------------------------------------------------  162 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                          ......||+.|+|||++.+. .++.++|||||||++|+|++|..
T Consensus       163 ------------------------------------~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~il~~l~~g~~  205 (279)
T 3fdn_A          163 ------------------------------------RRTDLCGTLDYLPPEMIEGR-MHDEKVDLWSLGVLCYEFLVGKP  205 (279)
T ss_dssp             -----------------------------------------CCCCTTCCHHHHTTC-CCCTTHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------------cccccCCCCCccCHhHhccC-CCCccchhHhHHHHHHHHHHCCC
Confidence                                                00123589999999999654 46899999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.........+..                                          ....++..+++.+.+||.+||.
T Consensus       206 p~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~li~~~l~  243 (279)
T 3fdn_A          206 PFEANTYQETYKRISR------------------------------------------VEFTFPDFVTEGARDLISRLLK  243 (279)
T ss_dssp             TTCCSSHHHHHHHHHH------------------------------------------TCCCCCTTSCHHHHHHHHHHCC
T ss_pred             CCCCCcHHHHHHHHHh------------------------------------------CCCCCCCcCCHHHHHHHHHHhc
Confidence            9988776544332221                                          1123345578899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccchh
Q 004835          671 VNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      .||++|||+.|+|+||||++...
T Consensus       244 ~~p~~Rps~~e~l~h~~~~~~~~  266 (279)
T 3fdn_A          244 HNPSQRPMLREVLEHPWITANSS  266 (279)
T ss_dssp             SSGGGSCCHHHHHHCHHHHHHCS
T ss_pred             cChhhCCCHHHHhhCccccCCcc
Confidence            99999999999999999987553

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=1.1e-43  Score=409.57  Aligned_cols=268  Identities=22%  Similarity=0.319  Sum_probs=221.2

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ...++|++.+.||+|+||.||+|++..+|+.||||++...     .....+.+|+.+|..++|++ |+++++++.+.+..
T Consensus       181 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~-Iv~l~~~~~~~~~l  259 (576)
T 2acx_A          181 VTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRF-VVSLAYAYETKDAL  259 (576)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEE
T ss_pred             ccccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCC-EeeEEEEEeeCCEE
Confidence            3457899999999999999999999999999999998642     33456789999999999998 99999999999999


Q ss_pred             EEEEeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccC
Q 004835          273 CFVLEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFD  347 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~  347 (728)
                      |+||||+.++.+..+...     +++..++.|+.||+.||.|||++|||||||||+||||+ .++.+||+|||+|+....
T Consensus       260 ~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld-~~g~vKL~DFGla~~~~~  338 (576)
T 2acx_A          260 CLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLD-DHGHIRISDLGLAVHVPE  338 (576)
T ss_dssp             EEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTSCEEECCCTTCEECCT
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEe-CCCCeEEEecccceeccc
Confidence            999999999988766532     88999999999999999999999999999999999999 667899999999974210


Q ss_pred             CCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccc
Q 004835          348 GSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAK  427 (728)
Q Consensus       348 ~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~  427 (728)
                      ..                                                                              
T Consensus       339 ~~------------------------------------------------------------------------------  340 (576)
T 2acx_A          339 GQ------------------------------------------------------------------------------  340 (576)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             Cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             cccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCC
Q 004835          428 EATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAG  507 (728)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (728)
                                                                                                      
T Consensus       341 --------------------------------------------------------------------------------  340 (576)
T 2acx_A          341 --------------------------------------------------------------------------------  340 (576)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhc
Q 004835          508 LMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMI  587 (728)
Q Consensus       508 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLlt  587 (728)
                                                             .....+||+.|+|||++.+.. ++.++|||||||++|||++
T Consensus       341 ---------------------------------------~~~~~~GT~~Y~APEvl~~~~-~~~~~DiwSLGvilyeLlt  380 (576)
T 2acx_A          341 ---------------------------------------TIKGRVGTVGYMAPEVVKNER-YTFSPDWWALGCLLYEMIA  380 (576)
T ss_dssp             ---------------------------------------CEECCCSCGGGCCHHHHTTCE-ESSHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------cccccCCCccccCHHHHcCCC-CCccchHHHHHHHHHHHHh
Confidence                                                   001346999999999996654 6999999999999999999


Q ss_pred             CCCCCCCCCh----HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHH
Q 004835          588 GRTPFFGDPE----QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD  663 (728)
Q Consensus       588 G~~PF~~~~~----~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d  663 (728)
                      |.+||.+...    ..+...+.                                          .....++..+++++.+
T Consensus       381 G~~PF~~~~~~~~~~~i~~~i~------------------------------------------~~~~~~p~~~s~~~~d  418 (576)
T 2acx_A          381 GQSPFQQRKKKIKREEVERLVK------------------------------------------EVPEEYSERFSPQARS  418 (576)
T ss_dssp             SSCSSSCSSSCCCHHHHHHHHH------------------------------------------HCCCCCCTTSCHHHHH
T ss_pred             CCCCCcccccchhHHHHHHHhh------------------------------------------cccccCCccCCHHHHH
Confidence            9999987542    22222221                                          1123344568899999


Q ss_pred             HHHHhcccCCCCCC-----CHHHHhcCCCCccchhcchHhHhhhccccc
Q 004835          664 LVDKCLTVNPRLRI-----SAEDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       664 Li~~~L~~dP~~Rp-----ta~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      ||.+||..||.+||     +++|+++||||+++.+....++.+.+....
T Consensus       419 LI~~lL~~dP~~R~g~~~~sa~eil~HpfF~~i~w~~l~~~~~~pp~~p  467 (576)
T 2acx_A          419 LCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRLGAGMLEPPFKP  467 (576)
T ss_dssp             HHHHHTCSSGGGSTTCSSSHHHHHHTSGGGTTCCHHHHHTTCSCCSCCC
T ss_pred             HHHHhccCCHHHcCCCCCCCHHHHHhChhhccCCHHHHhcCCCCCCCCC
Confidence            99999999999999     799999999999998876666555544443

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=4.2e-43  Score=367.89  Aligned_cols=143  Identities=27%  Similarity=0.342  Sum_probs=128.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ++|.+.+.||+|+||.||+|++..++..||+|++....   ....+.+|+.++++++|+| |+++++++......|+|||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~lv~e  100 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPN-IIKIFEVFEDYHNMYIVME  100 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSEEEEEEC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCch-HHhHHHheecCCeEEEEEE
Confidence            57999999999999999999999999999999986542   3467889999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHh-------hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec--CCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLK-------KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC--KAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~-------~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~--~~~~~kL~DFGlA~~  344 (728)
                      |+.++.+....       ..+++..++.++.||+.||.|||++||+||||||+|||++.  ..+.+||+|||++..
T Consensus       101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~  176 (285)
T 3is5_A          101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAEL  176 (285)
T ss_dssp             CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC
T ss_pred             eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeeccee
Confidence            99998776544       24899999999999999999999999999999999999953  346799999999864

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.7e-43  Score=379.14  Aligned_cols=264  Identities=28%  Similarity=0.399  Sum_probs=209.0

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-------CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-------ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .++|++.+.||+|+||.||+|++..+++.||||++...       .....+.+|+.++.+++|+| |+++++++...+..
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~  103 (345)
T 3hko_A           25 QKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPN-IARLYEVYEDEQYI  103 (345)
T ss_dssp             HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEE
T ss_pred             hhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCC-cceeehhhccCCeE
Confidence            35899999999999999999999999999999998632       33467889999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh-------------------------------------------cCChHHHHHHHHHHHHHHHH
Q 004835          273 CFVLEHVKHDRPEVLKK-------------------------------------------EIDLSQLQWYGYCLFRALAS  309 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-------------------------------------------~l~~~~~~~i~~QIl~aL~y  309 (728)
                      |+||||+.++++..+..                                           .+++..++.++.||+.||.|
T Consensus       104 ~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~  183 (345)
T 3hko_A          104 CLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHY  183 (345)
T ss_dssp             EEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence            99999999998877653                                           13567788899999999999


Q ss_pred             HHhCCcEeccCCCCceEeecCC-CceEEEeeeccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCC
Q 004835          310 LHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNL  388 (728)
Q Consensus       310 LHs~gIIHRDIKPeNILld~~~-~~~kL~DFGlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~  388 (728)
                      ||++||+||||||+||||+.++ ..+||+|||++........                                      
T Consensus       184 LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~--------------------------------------  225 (345)
T 3hko_A          184 LHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNN--------------------------------------  225 (345)
T ss_dssp             HHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTC--------------------------------------
T ss_pred             HHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCc--------------------------------------
Confidence            9999999999999999998433 3799999999975211000                                      


Q ss_pred             CccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCC
Q 004835          389 EPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASD  468 (728)
Q Consensus       389 ~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (728)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (345)
T 3hko_A          226 --------------------------------------------------------------------------------  225 (345)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCC
Q 004835          469 CPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKD  548 (728)
Q Consensus       469 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  548 (728)
                                                                                                ......
T Consensus       226 --------------------------------------------------------------------------~~~~~~  231 (345)
T 3hko_A          226 --------------------------------------------------------------------------GEYYGM  231 (345)
T ss_dssp             --------------------------------------------------------------------------C-----
T ss_pred             --------------------------------------------------------------------------cccccc
Confidence                                                                                      000001


Q ss_pred             CCCcCCCCcccchhhhcc-CCCCCchhHHHHHHHHHHHhcCCCCCCCCChHHH-HHHHHHhCCchHHHHHHhccCCCCCc
Q 004835          549 GPCAGTKGFRAPEVLFRS-QHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNI-KDIAKLRGSEDLWEVAKLHNRESSFP  626 (728)
Q Consensus       549 ~~~~GT~~Y~APEvl~~~-~~~~~~~DIWSlG~il~eLltG~~PF~~~~~~~l-~~i~~~~G~~~~~~~~~~~~~~~~~~  626 (728)
                      ....||+.|+|||++.+. ..++.++|||||||++|+|++|+.||.+...... ..++.               ....++
T Consensus       232 ~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~---------------~~~~~~  296 (345)
T 3hko_A          232 TTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLN---------------KKLCFE  296 (345)
T ss_dssp             ---CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH---------------CCCCTT
T ss_pred             cccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHh---------------cccccC
Confidence            134589999999999642 4578999999999999999999999988776433 22221               000000


Q ss_pred             chhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          627 EDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                                              ......+++.+.+||.+||..||.+|||+.++|+||||+++.+.+
T Consensus       297 ------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~hp~~~~~~~~~  341 (345)
T 3hko_A          297 ------------------------NPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQFSDKI  341 (345)
T ss_dssp             ------------------------SGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHHSHHHHTTSSCS
T ss_pred             ------------------------CcccccCCHHHHHHHHHHcCCChhHCCCHHHHhcChhhccChHhh
Confidence                                    111235788999999999999999999999999999999877543

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=7.3e-44  Score=385.89  Aligned_cols=142  Identities=24%  Similarity=0.315  Sum_probs=124.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .++|++.+.||+|+||.||+|++..+|+.||||++.....  ...+|+.++.++ .|+| |+++++++.++...|+||||
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--~~~~E~~~l~~~~~hp~-iv~~~~~~~~~~~~~lv~E~   97 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR--DPTEEIEILLRYGQHPN-IITLKDVYDDGKYVYVVTEL   97 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC--CCHHHHHHHHHHTTSTT-BCCEEEEEECSSEEEEEECC
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC--ChHHHHHHHHHhcCCCC-cCeEEEEEEcCCEEEEEEeC
Confidence            3579999999999999999999999999999999875432  235788999888 6887 99999999999999999999


Q ss_pred             cCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC---CceEEEeeecccc
Q 004835          279 VKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA---VKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~---~~~kL~DFGlA~~  344 (728)
                      +.++.+.....   .+++..+..++.||+.||.|||++||+||||||+|||+..++   ..+||+|||++..
T Consensus        98 ~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~  169 (342)
T 2qr7_A           98 MKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQ  169 (342)
T ss_dssp             CCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEE
T ss_pred             CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCccc
Confidence            99988766542   389999999999999999999999999999999999985333   3589999999975

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=7.1e-43  Score=363.04  Aligned_cols=142  Identities=26%  Similarity=0.276  Sum_probs=128.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ++|.+.+.||+|+||.||+|.+..++..||+|++...  ...+.+.+|+.++.+++|+| |+++++++..+...|+||||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~   87 (277)
T 3f3z_A            9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPN-IIRLYETFEDNTDIYLVMEL   87 (277)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSEEEEEEEC
T ss_pred             hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCC-EeeEEEEEecCCeEEEEEec
Confidence            4799999999999999999999999999999998653  44567889999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEe---ecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLF---SCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILl---d~~~~~~kL~DFGlA~~  344 (728)
                      +.++++..+..   .+++..+..++.||+.||.|||++||+||||||+|||+   + .++.++|+|||++..
T Consensus        88 ~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~-~~~~~~l~Dfg~~~~  158 (277)
T 3f3z_A           88 CTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDS-PDSPLKLIDFGLAAR  158 (277)
T ss_dssp             CCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSS-TTCCEEECCCTTCEE
T ss_pred             cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCC-CCCcEEEEeccccee
Confidence            99988765542   38999999999999999999999999999999999999   4 567899999999864

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=2e-43  Score=399.67  Aligned_cols=251  Identities=25%  Similarity=0.351  Sum_probs=211.5

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|.+.+.||+|+||.||+|++..+|+.||||++...     .....+.+|+.+++.++|+| |+++++++...+..|
T Consensus        14 ~~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn-Iv~l~~~~~~~~~~~   92 (476)
T 2y94_A           14 KIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPH-IIKLYQVISTPSDIF   92 (476)
T ss_dssp             EETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEE
T ss_pred             eecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCEEE
Confidence            357999999999999999999999999999999998643     23456889999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++....... 
T Consensus        93 lv~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~-~~~~vkL~DFG~a~~~~~~~-  170 (476)
T 2y94_A           93 MVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLD-AHMNAKIADFGLSNMMSDGE-  170 (476)
T ss_dssp             EEEECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEC-TTCCEEECCCSSCEECCTTC-
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEe-cCCCeEEEeccchhhccccc-
Confidence            9999999988877653   389999999999999999999999999999999999999 66789999999997521100 


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (476)
T 2y94_A          171 --------------------------------------------------------------------------------  170 (476)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (476)
T 2y94_A          171 --------------------------------------------------------------------------------  170 (476)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                          .....+||+.|+|||++.+...++.++|||||||++|+|++|..
T Consensus       171 ------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~  214 (476)
T 2y94_A          171 ------------------------------------FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTL  214 (476)
T ss_dssp             ------------------------------------CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------------cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCC
Confidence                                                01134689999999999776656889999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.....+...+.                                          .....++..+++.+.+||.+||.
T Consensus       215 Pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~~Li~~~L~  252 (476)
T 2y94_A          215 PFDDDHVPTLFKKIC------------------------------------------DGIFYTPQYLNPSVISLLKHMLQ  252 (476)
T ss_dssp             SSCCSSSHHHHHHHH------------------------------------------TTCCCCCTTCCHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHh------------------------------------------cCCcCCCccCCHHHHHHHHHHcC
Confidence            998876544433221                                          00112234578899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCcc
Q 004835          671 VNPRLRISAEDALKHEFFAP  690 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~  690 (728)
                      .||.+|||++|+++||||+.
T Consensus       253 ~dP~~Rpt~~eil~hp~~~~  272 (476)
T 2y94_A          253 VDPMKRATIKDIREHEWFKQ  272 (476)
T ss_dssp             SSTTTSCCHHHHHTCHHHHT
T ss_pred             CCchhCcCHHHHHhCHHhhh
Confidence            99999999999999999985

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-43  Score=375.79  Aligned_cols=142  Identities=27%  Similarity=0.330  Sum_probs=121.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.++||+|+||+||+|++..+|+.||||++....    .......|+..+.++ .|+| |+++++++..++..|+|
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~-iv~l~~~~~~~~~~~lv  135 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPC-CVRLEQAWEEGGILYLQ  135 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEEETTEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCc-EEEEEEEEEeCCEEEEE
Confidence            57999999999999999999999999999999876432    223345566666655 7887 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.+++...+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||++..
T Consensus       136 ~e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~-~~~~~kl~DFG~a~~  206 (311)
T 3p1a_A          136 TELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLG-PRGRCKLGDFGLLVE  206 (311)
T ss_dssp             EECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-GGGCEEECCCTTCEE
T ss_pred             EeccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEC-CCCCEEEccceeeee
Confidence            99997765555443   389999999999999999999999999999999999998 667899999999864

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=5.2e-43  Score=401.94  Aligned_cols=269  Identities=22%  Similarity=0.319  Sum_probs=221.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..++|.+.+.||+|+||.||+|++..+|+.||||++...     .....+.+|+.++.+++|++ |++++++|......|
T Consensus       183 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~-Iv~l~~~~~~~~~l~  261 (543)
T 3c4z_A          183 GEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRF-IVSLAYAFETKTDLC  261 (543)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEEE
T ss_pred             ChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCC-EeeEEEEEeeCCEEE
Confidence            457899999999999999999999999999999998643     23456789999999999998 999999999999999


Q ss_pred             EEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccccc
Q 004835          274 FVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGF  346 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~  346 (728)
                      +||||+.++.+..+..       .+++..++.|+.||+.||.|||++||+||||||+||||+ .++.+||+|||+++...
T Consensus       262 lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~-~~g~vkL~DFGla~~~~  340 (543)
T 3c4z_A          262 LVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLD-DDGNVRISDLGLAVELK  340 (543)
T ss_dssp             EEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTSCEEECCCTTCEECC
T ss_pred             EEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEe-CCCCEEEeecceeeecc
Confidence            9999999998876542       388999999999999999999999999999999999999 66789999999997421


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ...                                                                             
T Consensus       341 ~~~-----------------------------------------------------------------------------  343 (543)
T 3c4z_A          341 AGQ-----------------------------------------------------------------------------  343 (543)
T ss_dssp             TTC-----------------------------------------------------------------------------
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       344 --------------------------------------------------------------------------------  343 (543)
T 3c4z_A          344 --------------------------------------------------------------------------------  343 (543)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                             ......+||+.|+|||++.+.. |+.++|||||||++|||+
T Consensus       344 ---------------------------------------~~~~~~~GT~~Y~APE~l~~~~-~~~~~DiwSlGvilyell  383 (543)
T 3c4z_A          344 ---------------------------------------TKTKGYAGTPGFMAPELLLGEE-YDFSVDYFALGVTLYEMI  383 (543)
T ss_dssp             ---------------------------------------CCBCCCCSCTTTSCHHHHTTCC-BCTHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------cccccccCCccccChhhhcCCC-CChHHhcCcchHHHHHHH
Confidence                                                   0011346999999999996654 699999999999999999


Q ss_pred             cCCCCCCCCCh----HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHH
Q 004835          587 IGRTPFFGDPE----QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF  662 (728)
Q Consensus       587 tG~~PF~~~~~----~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (728)
                      +|.+||.+...    ..+...+                                          ......++..++..+.
T Consensus       384 tG~~PF~~~~~~~~~~~~~~~i------------------------------------------~~~~~~~p~~~s~~~~  421 (543)
T 3c4z_A          384 AARGPFRARGEKVENKELKQRV------------------------------------------LEQAVTYPDKFSPASK  421 (543)
T ss_dssp             HSSCSSCCTTCCCCHHHHHHHH------------------------------------------HHCCCCCCTTSCHHHH
T ss_pred             hCCCCCCCCccchhHHHHHHHH------------------------------------------hhcccCCCcccCHHHH
Confidence            99999987532    2222111                                          1122334567889999


Q ss_pred             HHHHHhcccCCCCCCC-----HHHHhcCCCCccchhcchHhHhhhcccccC
Q 004835          663 DLVDKCLTVNPRLRIS-----AEDALKHEFFAPCHEMLRKQKLLRQGSSID  708 (728)
Q Consensus       663 dLi~~~L~~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~~~~~~~~  708 (728)
                      +||.+||..||++||+     ++++++||||+++.+....++.+.+...++
T Consensus       422 ~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~i~w~~l~~~~~~pp~~P~  472 (543)
T 3c4z_A          422 DFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQLEAGMLTPPFVPD  472 (543)
T ss_dssp             HHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTTCCHHHHHTTCSCCSCCCC
T ss_pred             HHHHHhccCCHhHCCCCcccCHHHHHcCccccCCCHHHHHcCCCCCCCCCC
Confidence            9999999999999996     589999999999998777666665555443

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=9.7e-43  Score=374.54  Aligned_cols=297  Identities=25%  Similarity=0.370  Sum_probs=217.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeC-----Ce
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCG-----DS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~-----~~  271 (728)
                      .++|.+.+.||+|+||.||+|++..+|+.||||++.....   ...+.+|+.++++++|+| |+++++++...     ..
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~~~~   88 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHEN-IITIFNIQRPDSFENFNE   88 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTT-BCCEEEECCCSCSTTCCC
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCC-cCCeeeeecccccCccce
Confidence            4689999999999999999999999999999999864432   345779999999999999 99999887654     67


Q ss_pred             eEEEEeccCCCChHHHhh-cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          272 DCFVLEHVKHDRPEVLKK-EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~-~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      .|+||||+.+++...+.. .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++........
T Consensus        89 ~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~-~~~~~kl~Dfg~a~~~~~~~~  167 (353)
T 2b9h_A           89 VYIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLIN-SNCDLKVCDFGLARIIDESAA  167 (353)
T ss_dssp             EEEEECCCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEC-TTCCEEECCCTTCEECC----
T ss_pred             EEEEEeccCccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEc-CCCcEEEEecccccccccccc
Confidence            899999999754444433 489999999999999999999999999999999999998 667899999999975321100


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                      ....                                                                            
T Consensus       168 ~~~~----------------------------------------------------------------------------  171 (353)
T 2b9h_A          168 DNSE----------------------------------------------------------------------------  171 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccC----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (353)
T 2b9h_A          172 --------------------------------------------------------------------------------  171 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                    ..+........+||+.|+|||++.+...++.++|||||||++|+|++|+.
T Consensus       172 ------------------------------~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~  221 (353)
T 2b9h_A          172 ------------------------------PTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRP  221 (353)
T ss_dssp             --------------------------------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------ccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCC
Confidence                                          00000111245799999999998776667999999999999999999999


Q ss_pred             CCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          591 PFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      ||.+.+. +.+..++...|.+.........    ..+........++......+       ......+++.+.+||.+||
T Consensus       222 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~li~~~L  290 (353)
T 2b9h_A          222 IFPGRDYRHQLLLIFGIIGTPHSDNDLRCI----ESPRAREYIKSLPMYPAAPL-------EKMFPRVNPKGIDLLQRML  290 (353)
T ss_dssp             SCCCSSHHHHHHHHHHHHCCCCSTTTTTTC----CCHHHHHHHHTSCCCCCCCH-------HHHSTTSCHHHHHHHHHHS
T ss_pred             CCCCCCcHHHHHHHHHHhCCCchhcccccc----ccchhhHHhhcccCCCCcch-------hhhcccCCHHHHHHHHHhc
Confidence            9998776 5566777777754311000000    00000000000000000001       0123467899999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      ..||++|||+.|+|+||||+.+....
T Consensus       291 ~~dP~~Rpt~~ell~hp~~~~~~~~~  316 (353)
T 2b9h_A          291 VFDPAKRITAKEALEHPYLQTYHDPN  316 (353)
T ss_dssp             CSSGGGSCCHHHHHTSGGGTTTCCTT
T ss_pred             CcCcccCCCHHHHhcCccccccCCcc
Confidence            99999999999999999999876543

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=6.1e-43  Score=377.72  Aligned_cols=282  Identities=27%  Similarity=0.441  Sum_probs=218.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeCCe-----
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-----  271 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~-----  271 (728)
                      ++|.+.+.||+|+||.||+|++..+|+.||||++.....    ...+.+|+.++..++|+| |+++++++.....     
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHEN-VIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTT-BCCCSEEECSCSSGGGCC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCC-cccHhheEecccccccce
Confidence            589999999999999999999999999999999865422    346788999999999999 9999999987654     


Q ss_pred             -eEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          272 -DCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       272 -~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                       .|+||||+.+.+...+...+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++.....   
T Consensus       103 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~-~~~~~kl~Dfg~~~~~~~---  178 (353)
T 3coi_A          103 DFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVN-EDCELKILDFGLARHADA---  178 (353)
T ss_dssp             CCEEEEECCSEEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEEC-TTCCEEECSTTCTTC------
T ss_pred             eEEEEeccccCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeEC-CCCcEEEeecccccCCCC---
Confidence             499999999765555555699999999999999999999999999999999999999 667899999999863100   


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (353)
T 3coi_A          179 --------------------------------------------------------------------------------  178 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (353)
T 3coi_A          179 --------------------------------------------------------------------------------  178 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                          .....+||+.|+|||++.+...++.++|||||||++|+|++|..
T Consensus       179 ------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~  222 (353)
T 3coi_A          179 ------------------------------------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKT  222 (353)
T ss_dssp             -----------------------------------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------------CccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCC
Confidence                                                00123579999999999775667999999999999999999999


Q ss_pred             CCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          591 PFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      ||.+.+. +.+..+++..|.+.......+....   ....  ...++......|       ......++..+.+||.+||
T Consensus       223 pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~-------~~~~~~~~~~~~~li~~~L  290 (353)
T 3coi_A          223 LFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKA---AKSY--IQSLPQTPRKDF-------TQLFPRASPQAADLLEKML  290 (353)
T ss_dssp             SSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHH---HHHH--HHTSCBCSSCCT-------TTTCTTSCHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHH---HHHH--HHhCcCCCCccH-------HHhcCCcCHHHHHHHHHHc
Confidence            9998775 5677888888865432221111000   0000  000000000001       1223467899999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      ..||++|||++|+|+||||+.+....
T Consensus       291 ~~dp~~Rpt~~e~l~hp~f~~~~~~~  316 (353)
T 3coi_A          291 ELDVDKRLTAAQALTHPFFEPFRDPE  316 (353)
T ss_dssp             CSCTTTSCCHHHHHTSGGGTTTCCGG
T ss_pred             CCCcccCCCHHHHhcCcchhhccCcc
Confidence            99999999999999999999876544

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=4.1e-43  Score=396.57  Aligned_cols=254  Identities=29%  Similarity=0.421  Sum_probs=209.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC----cCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA----NASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~----~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ++|++.+.||+|+||+||+|++..+++.||||++..    ......+.+|+.++++++||| |+++++++......|+||
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~lv~  100 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPN-IMKLFEILEDSSSFYIVG  100 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEEEEEE
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCC-cCeEEEEEEcCCEEEEEE
Confidence            579999999999999999999999999999999853    334567889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec--CCCceEEEeeeccccccCCCCc
Q 004835          277 EHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC--KAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       277 E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~--~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      ||+.++.+....   ..+++..+..++.||+.||.|||++||+||||||+||||+.  .++.+||+|||++......   
T Consensus       101 e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~---  177 (486)
T 3mwu_A          101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN---  177 (486)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC---
T ss_pred             EcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCC---
Confidence            999998876544   34899999999999999999999999999999999999963  3457999999998641100   


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (486)
T 3mwu_A          178 --------------------------------------------------------------------------------  177 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (486)
T 3mwu_A          178 --------------------------------------------------------------------------------  177 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                        ......+||+.|+|||++.+  .++.++||||||||+|+|++|.+|
T Consensus       178 ----------------------------------~~~~~~~gt~~y~aPE~~~~--~~~~~~DiwslG~il~~ll~g~~p  221 (486)
T 3mwu_A          178 ----------------------------------TKMKDRIGTAYYIAPEVLRG--TYDEKCDVWSAGVILYILLSGTPP  221 (486)
T ss_dssp             --------------------------------------CCTTGGGGCCGGGGGS--CCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------------------------CccCCCcCCCCCCCHHHhCC--CCCchhhHHHHHHHHHHHHhCCCC
Confidence                                              00113468999999999854  379999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          592 FFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       592 F~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      |.+.+...+...+.. |             ..             ......|           ..+++.+.+||.+||.+
T Consensus       222 f~~~~~~~~~~~i~~-~-------------~~-------------~~~~~~~-----------~~~s~~~~~li~~~L~~  263 (486)
T 3mwu_A          222 FYGKNEYDILKRVET-G-------------KY-------------AFDLPQW-----------RTISDDAKDLIRKMLTF  263 (486)
T ss_dssp             SCCSSHHHHHHHHHH-T-------------CC-------------CSCSGGG-----------GGSCHHHHHHHHHHTCS
T ss_pred             CCCCCHHHHHHHHHh-C-------------CC-------------CCCCccc-----------CCCCHHHHHHHHHHcCC
Confidence            998877554433321 0             00             0111122           46789999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccch
Q 004835          672 NPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      ||.+|||+.|+|+||||+...
T Consensus       264 dp~~R~t~~~~l~hp~~~~~~  284 (486)
T 3mwu_A          264 HPSLRITATQCLEHPWIQKYS  284 (486)
T ss_dssp             STTTSCCHHHHHHCHHHHHTC
T ss_pred             ChhhCcCHHHHhcCHhhccCc
Confidence            999999999999999998654

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=2.4e-43  Score=377.65  Aligned_cols=295  Identities=23%  Similarity=0.328  Sum_probs=217.0

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCC-eEEEEEeccCcC-chhHHHHHHHHHHhcCCCCc-----eEEecceEEeCCeeE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDG-TVVAIKCPHANA-SKHYVSNELRMLERFGGKNF-----IIKYEGCFKCGDSDC  273 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g-~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~-----Ivkl~~~~~~~~~~~  273 (728)
                      ++|++.+.||+|+||.||+|.+..++ +.||||++.... ....+.+|+.+++.+.|++.     ++.+++++...+..|
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~   98 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMC   98 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEE
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEE
Confidence            68999999999999999999998776 799999987542 34567789999999876552     788889999999999


Q ss_pred             EEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec------------------CC
Q 004835          274 FVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC------------------KA  331 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~------------------~~  331 (728)
                      +||||++++++..+..    .+++..++.++.||+.||.|||++||+||||||+||||+.                  .+
T Consensus        99 lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~  178 (355)
T 2eu9_A           99 IAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKN  178 (355)
T ss_dssp             EEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESC
T ss_pred             EEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecccccccccccccccccccCC
Confidence            9999998887776653    3889999999999999999999999999999999999941                  45


Q ss_pred             CceEEEeeeccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCccc
Q 004835          332 VKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRN  411 (728)
Q Consensus       332 ~~~kL~DFGlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~  411 (728)
                      +.+||+|||++.....                                                                
T Consensus       179 ~~~kl~Dfg~~~~~~~----------------------------------------------------------------  194 (355)
T 2eu9_A          179 TSIRVADFGSATFDHE----------------------------------------------------------------  194 (355)
T ss_dssp             CCEEECCCTTCEETTS----------------------------------------------------------------
T ss_pred             CcEEEeecCccccccc----------------------------------------------------------------
Confidence            6788899988764100                                                                


Q ss_pred             ccccCCCCCCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCcccccc
Q 004835          412 IINSQGADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYI  491 (728)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  491 (728)
                                                                                                      
T Consensus       195 --------------------------------------------------------------------------------  194 (355)
T 2eu9_A          195 --------------------------------------------------------------------------------  194 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCC
Q 004835          492 TPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGP  571 (728)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~  571 (728)
                                                                             .....+||+.|+|||++.+.. ++.
T Consensus       195 -------------------------------------------------------~~~~~~gt~~y~aPE~~~~~~-~~~  218 (355)
T 2eu9_A          195 -------------------------------------------------------HHTTIVATRHYRPPEVILELG-WAQ  218 (355)
T ss_dssp             -------------------------------------------------------CCCSSCSCGGGCCHHHHTTCC-CCT
T ss_pred             -------------------------------------------------------cccCCcCCCcccCCeeeecCC-CCC
Confidence                                                                   001345899999999996554 699


Q ss_pred             chhHHHHHHHHHHHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCch-hhhh----
Q 004835          572 KLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLP-EWCK----  645 (728)
Q Consensus       572 ~~DIWSlG~il~eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----  645 (728)
                      ++|||||||++|||++|..||.+... +.+..+.+..|..+.............+...    ..++..... .+..    
T Consensus       219 ~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  294 (355)
T 2eu9_A          219 PCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGG----LVWDENSSDGRYVKENCK  294 (355)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTE----ECCCTTSHHHHHHHHHCC
T ss_pred             ccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhcccc----cccccccchhccccccCC
Confidence            99999999999999999999998766 4566677777764433332221111110000    000000000 0000    


Q ss_pred             hhccCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhcchHhH
Q 004835          646 LITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQK  699 (728)
Q Consensus       646 ~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~  699 (728)
                      ............+.++.+||.+||..||++|||+.|+|+||||+++.+..+...
T Consensus       295 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~~~~  348 (355)
T 2eu9_A          295 PLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGLTPEERSFH  348 (355)
T ss_dssp             CGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGCCHHHHC--
T ss_pred             cccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcChhhcCCChhhcccc
Confidence            000000111233568999999999999999999999999999999876555433

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=6.5e-43  Score=382.54  Aligned_cols=293  Identities=21%  Similarity=0.340  Sum_probs=214.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCC-----ceEEecceEEeCCeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKN-----FIIKYEGCFKCGDSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n-----~Ivkl~~~~~~~~~~~  273 (728)
                      .++|++.+.||+|+||+||+|++..+++.||||++.... ....+.+|+.++..+.|++     +|+.+++++...+..|
T Consensus        53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~  132 (382)
T 2vx3_A           53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLC  132 (382)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEE
T ss_pred             eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceE
Confidence            579999999999999999999999999999999987543 2455778999999887444     3899999999999999


Q ss_pred             EEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHH--hCCcEeccCCCCceEeec-CCCceEEEeeecccccc
Q 004835          274 FVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLH--KQGIVHRDVKPGNFLFSC-KAVKGYLIDFNLAMVGF  346 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLH--s~gIIHRDIKPeNILld~-~~~~~kL~DFGlA~~~~  346 (728)
                      +||||+++++.+.+..    .+++..++.++.||+.||.|||  ..|||||||||+||||+. ..+.+||+|||++....
T Consensus       133 lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~  212 (382)
T 2vx3_A          133 LVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLG  212 (382)
T ss_dssp             EEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETT
T ss_pred             EEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCceecc
Confidence            9999998865555543    3889999999999999999999  479999999999999963 45679999999997411


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      .                                                                               
T Consensus       213 ~-------------------------------------------------------------------------------  213 (382)
T 2vx3_A          213 Q-------------------------------------------------------------------------------  213 (382)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       214 --------------------------------------------------------------------------------  213 (382)
T 2vx3_A          214 --------------------------------------------------------------------------------  213 (382)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                              .....+||+.|+|||++.+.. ++.++|||||||++|||+
T Consensus       214 ----------------------------------------~~~~~~~t~~y~aPE~~~~~~-~~~~~DiwSlG~il~ell  252 (382)
T 2vx3_A          214 ----------------------------------------RIYQYIQSRFYRSPEVLLGMP-YDLAIDMWSLGCILVEMH  252 (382)
T ss_dssp             ----------------------------------------CCCSSCSCGGGCCHHHHTTCC-CCTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------ccccccCCccccChHHHcCCC-CCcHHHHHHHHHHHHHHH
Confidence                                                    001346899999999997665 699999999999999999


Q ss_pred             cCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCC---CCCcchhh-------cccCCCCCCchhhhhhhccCCc---
Q 004835          587 IGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRE---SSFPEDLY-------AAKSLPPINLPEWCKLITKRPD---  652 (728)
Q Consensus       587 tG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---  652 (728)
                      +|++||.+.+. +.+..+++..|.+............   ...+...+       ............+.........   
T Consensus       253 tg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  332 (382)
T 2vx3_A          253 TGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPG  332 (382)
T ss_dssp             HSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGG
T ss_pred             hCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhHHHHHHHHhccccccccccccccccccCCcchhhHHHHhhccccCCC
Confidence            99999998776 5678888888865433221110000   00000000       0000111111111111110000   


Q ss_pred             --------ccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccch
Q 004835          653 --------FLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       653 --------~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                              ......+.+.+||.+||.+||++||||+|+|+||||++..
T Consensus       333 ~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~e~L~hp~f~~~~  380 (382)
T 2vx3_A          333 GRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKTA  380 (382)
T ss_dssp             GTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGCC--
T ss_pred             ccccccccccchhhHHHHHHHHHhcCCChhhCCCHHHHhcCcccccCC
Confidence                    0111224789999999999999999999999999998754

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=3.2e-43  Score=373.75  Aligned_cols=290  Identities=23%  Similarity=0.358  Sum_probs=212.9

Q ss_pred             CCeeEEEEecccCceEEEEEEE-cCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCC-----ceEEecceEEeCCeeE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARR-KNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKN-----FIIKYEGCFKCGDSDC  273 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~-~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n-----~Ivkl~~~~~~~~~~~  273 (728)
                      ++|++.+.||+|+||.||+|.+ ..+++.||||++.... ....+.+|+.++..+.|++     +|+++++++...+..|
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~   93 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHIC   93 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEE
Confidence            5899999999999999999998 5688999999987542 3456788999999988764     4899999999999999


Q ss_pred             EEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC------------------C
Q 004835          274 FVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK------------------A  331 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~------------------~  331 (728)
                      +||||+++++.+.+..    .+++..+..++.||+.||+|||++||+||||||+|||++..                  +
T Consensus        94 lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~  173 (339)
T 1z57_A           94 IVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLIN  173 (339)
T ss_dssp             EEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESC
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccccccC
Confidence            9999995555555443    37889999999999999999999999999999999999842                  4


Q ss_pred             CceEEEeeeccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCccc
Q 004835          332 VKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRN  411 (728)
Q Consensus       332 ~~~kL~DFGlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~  411 (728)
                      +.+||+|||++.....                                                                
T Consensus       174 ~~~kl~Dfg~~~~~~~----------------------------------------------------------------  189 (339)
T 1z57_A          174 PDIKVVDFGSATYDDE----------------------------------------------------------------  189 (339)
T ss_dssp             CCEEECCCSSCEETTS----------------------------------------------------------------
T ss_pred             CCceEeeCcccccCcc----------------------------------------------------------------
Confidence            4688888888763100                                                                


Q ss_pred             ccccCCCCCCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCcccccc
Q 004835          412 IINSQGADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYI  491 (728)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  491 (728)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (339)
T 1z57_A          190 --------------------------------------------------------------------------------  189 (339)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCC
Q 004835          492 TPMPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGP  571 (728)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~  571 (728)
                                                                             .....+||+.|+|||++.+.. ++.
T Consensus       190 -------------------------------------------------------~~~~~~gt~~y~aPE~~~~~~-~~~  213 (339)
T 1z57_A          190 -------------------------------------------------------HHSTLVSTRHYRAPEVILALG-WSQ  213 (339)
T ss_dssp             -------------------------------------------------------CCCSSCSCGGGCCHHHHTTSC-CCT
T ss_pred             -------------------------------------------------------ccccccCCccccChHHhhCCC-CCc
Confidence                                                                   001345899999999996554 699


Q ss_pred             chhHHHHHHHHHHHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCc-hhhh----h
Q 004835          572 KLDIWSAGVTLLYLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINL-PEWC----K  645 (728)
Q Consensus       572 ~~DIWSlG~il~eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~  645 (728)
                      ++|||||||++|||++|..||.+.+. +.+..+....|+.............. |....   ..+..... ..+.    .
T Consensus       214 ~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~  289 (339)
T 1z57_A          214 PCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKY-FHHDR---LDWDEHSSAGRYVSRACK  289 (339)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGG-EETTE---ECCCTTSHHHHHHHHHCC
T ss_pred             chhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhH-Hhhcc---ccccccccccchhhhcCc
Confidence            99999999999999999999998776 45666666677644333222211110 00000   00000000 0000    0


Q ss_pred             hhccCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          646 LITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       646 ~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      ............++.+.+||.+||..||++|||+.|+|+||||+.+.+.
T Consensus       290 ~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  338 (339)
T 1z57_A          290 PLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDLLKKS  338 (339)
T ss_dssp             CGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGGGC-
T ss_pred             chhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcCHHHHHHhcc
Confidence            0000011223456789999999999999999999999999999987754

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=3.4e-43  Score=371.11  Aligned_cols=287  Identities=23%  Similarity=0.301  Sum_probs=209.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEE-----------
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFK-----------  267 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~-----------  267 (728)
                      ++|.+.+.||+|+||.||+|.+..+|+.||||++....  ....+.+|+.++++++|+| |+++++++.           
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDN-IVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTT-BCCEEEEECTTSCBCCC---
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCC-eeEEEEeccccccccccccc
Confidence            58999999999999999999999999999999886543  3456789999999999999 999988763           


Q ss_pred             ---eCCeeEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecc
Q 004835          268 ---CGDSDCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       268 ---~~~~~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                         .....|+||||+.++ +..+..  .+++..++.++.||+.||+|||++||+||||||+|||++.+++.+||+|||++
T Consensus        90 ~~~~~~~~~lv~e~~~~~-L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~  168 (320)
T 2i6l_A           90 SLTELNSVYIVQEYMETD-LANVLEQGPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLA  168 (320)
T ss_dssp             -CCSCSEEEEEEECCSEE-HHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCTTC
T ss_pred             cccccCceeEEeeccCCC-HHHHhhcCCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCccc
Confidence               346789999999964 444433  38899999999999999999999999999999999999866778999999999


Q ss_pred             ccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCC
Q 004835          343 MVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSG  422 (728)
Q Consensus       343 ~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~  422 (728)
                      ........                                                                        
T Consensus       169 ~~~~~~~~------------------------------------------------------------------------  176 (320)
T 2i6l_A          169 RIMDPHYS------------------------------------------------------------------------  176 (320)
T ss_dssp             BCC-----------------------------------------------------------------------------
T ss_pred             cccCCCcc------------------------------------------------------------------------
Confidence            75210000                                                                        


Q ss_pred             ccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcc
Q 004835          423 ITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIA  502 (728)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (728)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (320)
T 2i6l_A          177 --------------------------------------------------------------------------------  176 (320)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHH
Q 004835          503 VAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTL  582 (728)
Q Consensus       503 ~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il  582 (728)
                                                               .........||+.|+|||++.+...++.++|||||||++
T Consensus       177 -----------------------------------------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il  215 (320)
T 2i6l_A          177 -----------------------------------------HKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIF  215 (320)
T ss_dssp             --------------------------------------------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHH
T ss_pred             -----------------------------------------cccccccccccccccCcHHhcCcccCCchhhhHhHHHHH
Confidence                                                     000011335799999999997766679999999999999


Q ss_pred             HHHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhH
Q 004835          583 LYLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL  661 (728)
Q Consensus       583 ~eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  661 (728)
                      |+|++|+.||.+... +.+..++...+.........+....   +.........+...   +       ..+...++.++
T Consensus       216 ~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~-------~~~~~~~~~~~  282 (320)
T 2i6l_A          216 AEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVI---PVYIRNDMTEPHKP---L-------TQLLPGISREA  282 (320)
T ss_dssp             HHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTS---CHHHHHHTTSCCCC---H-------HHHSTTCCHHH
T ss_pred             HHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcC---cccccccccCCCCC---h-------hHhcchhhHHH
Confidence            999999999998776 4455555554433222222211110   00000000000000   0       11234678999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          662 FDLVDKCLTVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       662 ~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      .+||.+||..||++|||++|+|+||||+.+..+.
T Consensus       283 ~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~p~  316 (320)
T 2i6l_A          283 VDFLEQILTFSPMDRLTAEEALSHPYMSIYSFPM  316 (320)
T ss_dssp             HHHHHTTSCSSGGGSCCHHHHHTSHHHHTTCC--
T ss_pred             HHHHHHHcCCCccccCCHHHHhCCcccccccCcc
Confidence            9999999999999999999999999999876554

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=1.1e-42  Score=395.11  Aligned_cols=257  Identities=28%  Similarity=0.376  Sum_probs=209.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc---------------CchhHHHHHHHHHHhcCCCCceEEecc
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---------------ASKHYVSNELRMLERFGGKNFIIKYEG  264 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~---------------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~  264 (728)
                      .++|.++++||+|+||+||+|++..+++.||||++...               ...+.+.+|+.++.++.||| |+++++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~  113 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPN-IIKLFD  113 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTT-BCCEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCC-CCeEEE
Confidence            46899999999999999999999999999999998643               22456889999999999999 999999


Q ss_pred             eEEeCCeeEEEEeccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC--CceEEEee
Q 004835          265 CFKCGDSDCFVLEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA--VKGYLIDF  339 (728)
Q Consensus       265 ~~~~~~~~~LV~E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~--~~~kL~DF  339 (728)
                      ++..+...|+||||+.++.+....   ..+++..+..++.||+.||.|||++||+||||||+|||++.++  ..+||+||
T Consensus       114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Df  193 (504)
T 3q5i_A          114 VFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDF  193 (504)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCC
T ss_pred             EEEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEEC
Confidence            999999999999999998876554   3489999999999999999999999999999999999998444  36899999


Q ss_pred             eccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCC
Q 004835          340 NLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGAD  419 (728)
Q Consensus       340 GlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~  419 (728)
                      |++......                                                                       
T Consensus       194 g~a~~~~~~-----------------------------------------------------------------------  202 (504)
T 3q5i_A          194 GLSSFFSKD-----------------------------------------------------------------------  202 (504)
T ss_dssp             TTCEECCTT-----------------------------------------------------------------------
T ss_pred             CCCEEcCCC-----------------------------------------------------------------------
Confidence            999752100                                                                       


Q ss_pred             CCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCC
Q 004835          420 GSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSN  499 (728)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  499 (728)
                                                                                                      
T Consensus       203 --------------------------------------------------------------------------------  202 (504)
T 3q5i_A          203 --------------------------------------------------------------------------------  202 (504)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHH
Q 004835          500 GIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAG  579 (728)
Q Consensus       500 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG  579 (728)
                                                                    ......+||+.|+|||++. . .++.++||||||
T Consensus       203 ----------------------------------------------~~~~~~~gt~~y~aPE~~~-~-~~~~~~DiwslG  234 (504)
T 3q5i_A          203 ----------------------------------------------YKLRDRLGTAYYIAPEVLK-K-KYNEKCDVWSCG  234 (504)
T ss_dssp             ----------------------------------------------SCBCCCCSCTTTCCHHHHT-T-CBCTHHHHHHHH
T ss_pred             ----------------------------------------------CccccccCCcCCCCHHHhc-c-CCCchHHHHHHH
Confidence                                                          0011346899999999985 3 379999999999


Q ss_pred             HHHHHHhcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCch
Q 004835          580 VTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS  659 (728)
Q Consensus       580 ~il~eLltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (728)
                      |++|+|++|.+||.+.+...+...+.. |             ...+             ....|           ..+++
T Consensus       235 ~il~~ll~g~~pf~~~~~~~~~~~i~~-~-------------~~~~-------------~~~~~-----------~~~s~  276 (504)
T 3q5i_A          235 VIMYILLCGYPPFGGQNDQDIIKKVEK-G-------------KYYF-------------DFNDW-----------KNISD  276 (504)
T ss_dssp             HHHHHHHHSSCSSCCSSHHHHHHHHHH-C-------------CCCC-------------CHHHH-----------TTSCH
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHc-C-------------CCCC-------------Ccccc-----------CCCCH
Confidence            999999999999998877655443321 1             0011             11122           46789


Q ss_pred             hHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          660 SLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       660 ~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      ++.+||.+||.+||.+|||++|+|+||||+.....
T Consensus       277 ~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~~~  311 (504)
T 3q5i_A          277 EAKELIKLMLTYDYNKRCTAEEALNSRWIKKYANN  311 (504)
T ss_dssp             HHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHTCCC
T ss_pred             HHHHHHHHHcCCChhHCCCHHHHhcCHhhhhchhc
Confidence            99999999999999999999999999999876543

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=5.6e-43  Score=371.31  Aligned_cols=142  Identities=22%  Similarity=0.303  Sum_probs=124.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCC-------
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD-------  270 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~-------  270 (728)
                      ++|++.+.||+|+||.||+|++..+|+.||||++....   ..+.+.+|+.++++++|+| |++++++|....       
T Consensus         6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG-IVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTT-BCCEEEEEEECCSCHHHHH
T ss_pred             hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCC-EeeEEEEEEEeccchhhhh
Confidence            57999999999999999999999999999999986432   3466889999999999999 999999886543       


Q ss_pred             --------------------------------------------------eeEEEEeccCCCChHHHhhc------CChH
Q 004835          271 --------------------------------------------------SDCFVLEHVKHDRPEVLKKE------IDLS  294 (728)
Q Consensus       271 --------------------------------------------------~~~LV~E~~~~~~l~~l~~~------l~~~  294 (728)
                                                                        ..|+||||+.++++..+...      ..+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                              38999999999998877643      4556


Q ss_pred             HHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          295 QLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       295 ~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||++..
T Consensus       165 ~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~-~~~~~kL~DfG~a~~  213 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFT-MDDVVKVGDFGLVTA  213 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTCCEEECCCTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEe-CCCCEEEeecCcccc
Confidence            7899999999999999999999999999999999 667899999999976

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2e-43  Score=380.72  Aligned_cols=142  Identities=25%  Similarity=0.283  Sum_probs=127.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----------chhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      ++|++.+.||+|+||.||+|++..+++.||||++....          ....+.+|+.++.+++|+| |+++++++...+
T Consensus        24 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-Iv~~~~~~~~~~  102 (335)
T 3dls_A           24 QKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHAN-IIKVLDIFENQG  102 (335)
T ss_dssp             HHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTT-BCCEEEEEECSS
T ss_pred             cceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCC-EeeEEEEEeeCC
Confidence            47999999999999999999999999999999987542          2335678999999999999 999999999999


Q ss_pred             eeEEEEeccCCC-ChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          271 SDCFVLEHVKHD-RPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       271 ~~~LV~E~~~~~-~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..++||||+.++ .+..+..   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus       103 ~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~-~~~~~kL~Dfg~a~~  179 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIA-EDFTIKLIDFGSAAY  179 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTSCEEECCCTTCEE
T ss_pred             EEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEc-CCCcEEEeecccceE
Confidence            999999999776 6665543   389999999999999999999999999999999999999 667899999999975

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=4.5e-43  Score=384.13  Aligned_cols=256  Identities=25%  Similarity=0.334  Sum_probs=203.0

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      |...+.||+|+||.||+|++..+|+.||+|++....  ....+.+|+.++.+++|+| |+++++++...+..|+||||++
T Consensus        91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~~~~~~~~~~~~~lv~E~~~  169 (373)
T 2x4f_A           91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHAN-LIQLYDAFESKNDIVLVMEYVD  169 (373)
T ss_dssp             EEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEEEEEECCT
T ss_pred             eecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCC-CCeEEEEEEECCEEEEEEeCCC
Confidence            344778999999999999999999999999987643  3456889999999999999 9999999999999999999999


Q ss_pred             CCChHHHh-h---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec-CCCceEEEeeeccccccCCCCccccC
Q 004835          281 HDRPEVLK-K---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC-KAVKGYLIDFNLAMVGFDGSFNQATL  355 (728)
Q Consensus       281 ~~~l~~l~-~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~-~~~~~kL~DFGlA~~~~~~~~~~~~~  355 (728)
                      ++.+..+. .   .+++..+..++.||+.||.|||++||+||||||+|||+.. +++.+||+|||++.......      
T Consensus       170 ~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~------  243 (373)
T 2x4f_A          170 GGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE------  243 (373)
T ss_dssp             TCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC------
T ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc------
Confidence            88765443 2   3899999999999999999999999999999999999952 45689999999997521000      


Q ss_pred             CCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCc
Q 004835          356 PGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTP  435 (728)
Q Consensus       356 ~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (728)
                                                                                                      
T Consensus       244 --------------------------------------------------------------------------------  243 (373)
T 2x4f_A          244 --------------------------------------------------------------------------------  243 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCC
Q 004835          436 AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSD  515 (728)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  515 (728)
                                                                                                      
T Consensus       244 --------------------------------------------------------------------------------  243 (373)
T 2x4f_A          244 --------------------------------------------------------------------------------  243 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 004835          516 LSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD  595 (728)
Q Consensus       516 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~  595 (728)
                                                     .....+||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.
T Consensus       244 -------------------------------~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~il~elltg~~pf~~~  291 (373)
T 2x4f_A          244 -------------------------------KLKVNFGTPEFLAPEVVNYD-FVSFPTDMWSVGVIAYMLLSGLSPFLGD  291 (373)
T ss_dssp             -------------------------------BCCCCCSSCTTCCHHHHTTC-BCCHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             -------------------------------ccccccCCCcEeChhhccCC-CCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence                                           01123589999999998544 4699999999999999999999999987


Q ss_pred             ChHH-HHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCC
Q 004835          596 PEQN-IKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR  674 (728)
Q Consensus       596 ~~~~-l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~  674 (728)
                      +... +..++...               ..+                        .......+++++.+||.+||..||.
T Consensus       292 ~~~~~~~~i~~~~---------------~~~------------------------~~~~~~~~~~~~~~li~~~L~~dp~  332 (373)
T 2x4f_A          292 NDAETLNNILACR---------------WDL------------------------EDEEFQDISEEAKEFISKLLIKEKS  332 (373)
T ss_dssp             SHHHHHHHHHHTC---------------CCS------------------------CSGGGTTSCHHHHHHHHTTSCSSGG
T ss_pred             CHHHHHHHHHhcc---------------CCC------------------------ChhhhccCCHHHHHHHHHHcCCChh
Confidence            7643 33333210               000                        0112245789999999999999999


Q ss_pred             CCCCHHHHhcCCCCccchhcch
Q 004835          675 LRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       675 ~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      +|||+.|+|+||||++.....+
T Consensus       333 ~Rps~~e~l~hp~~~~~~~~~~  354 (373)
T 2x4f_A          333 WRISASEALKHPWLSDHKLHSR  354 (373)
T ss_dssp             GSCCHHHHHHSHHHHCHHHHHH
T ss_pred             hCCCHHHHhcCcCcCCCchhhh
Confidence            9999999999999998765433

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=3.2e-43  Score=390.87  Aligned_cols=265  Identities=28%  Similarity=0.406  Sum_probs=205.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----------chhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      ++|.+.+.||+|+||+||+|.+..+++.||||++....          ....+.+|+.+|.+++|+| |+++++++. .+
T Consensus       135 ~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~l~~~~~-~~  212 (419)
T 3i6u_A          135 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPC-IIKIKNFFD-AE  212 (419)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTT-BCCCCEEEE-SS
T ss_pred             ccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCC-EeeEEEEEe-cC
Confidence            58999999999999999999999999999999986431          1234789999999999999 999999885 55


Q ss_pred             eeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEeeeccccc
Q 004835          271 SDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLIDFNLAMVG  345 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~DFGlA~~~  345 (728)
                      ..|+||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+|||++..  +..+||+|||+++..
T Consensus       213 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~  292 (419)
T 3i6u_A          213 DYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL  292 (419)
T ss_dssp             EEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSC
T ss_pred             ceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeecccceec
Confidence            6899999999988766542   48999999999999999999999999999999999999733  345999999999742


Q ss_pred             cCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccc
Q 004835          346 FDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITS  425 (728)
Q Consensus       346 ~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~  425 (728)
                      ...                                                                             
T Consensus       293 ~~~-----------------------------------------------------------------------------  295 (419)
T 3i6u_A          293 GET-----------------------------------------------------------------------------  295 (419)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            100                                                                             


Q ss_pred             cccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccccc
Q 004835          426 AKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAG  505 (728)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (728)
                                                                                                      
T Consensus       296 --------------------------------------------------------------------------------  295 (419)
T 3i6u_A          296 --------------------------------------------------------------------------------  295 (419)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhc--cCCCCCchhHHHHHHHHH
Q 004835          506 AGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFR--SQHQGPKLDIWSAGVTLL  583 (728)
Q Consensus       506 ~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~--~~~~~~~~DIWSlG~il~  583 (728)
                                                              ......+||+.|+|||++.+  ...++.++|||||||++|
T Consensus       296 ----------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~  335 (419)
T 3i6u_A          296 ----------------------------------------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILF  335 (419)
T ss_dssp             -------------------------------------------------CTTCCTTTTC----CTTHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHH
Confidence                                                    00113468999999999853  345688999999999999


Q ss_pred             HHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHH
Q 004835          584 YLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF  662 (728)
Q Consensus       584 eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (728)
                      +|++|..||.+... ..+...+.. |             ...+                        .++.+..+++.+.
T Consensus       336 ~lltg~~pf~~~~~~~~~~~~i~~-~-------------~~~~------------------------~~~~~~~~~~~~~  377 (419)
T 3i6u_A          336 ICLSGYPPFSEHRTQVSLKDQITS-G-------------KYNF------------------------IPEVWAEVSEKAL  377 (419)
T ss_dssp             HHHHSSCSSCCCSSSCCHHHHHHT-T-------------CCCC------------------------CHHHHTTSCHHHH
T ss_pred             HHHHCCCCCCCCcchHHHHHHHhc-C-------------CCCC------------------------CchhhcccCHHHH
Confidence            99999999976433 222222210 0             0000                        1122346789999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCccchhcchHhHhhh
Q 004835          663 DLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLR  702 (728)
Q Consensus       663 dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~~~~  702 (728)
                      +||.+||.+||++|||++|+|+||||++.......+.++.
T Consensus       378 ~li~~~L~~dP~~Rps~~e~l~hp~~~~~~~~~~~~~ll~  417 (419)
T 3i6u_A          378 DLVKKLLVVDPKARFTTEEALRHPWLQDEDMKRKFQDLLS  417 (419)
T ss_dssp             HHHHHHSCSSTTTSCCHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHccCChhHCcCHHHHhCCcccCChhHHHHHHHHhh
Confidence            9999999999999999999999999998877666666654

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=1.2e-42  Score=393.89  Aligned_cols=254  Identities=30%  Similarity=0.373  Sum_probs=206.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +.|++++.||+|+||+||+|++..++..||||++...    .....+.+|+.+++.++|+| |+++++++......|+||
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~lv~  115 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPN-IMKLYDFFEDKRNYYLVM  115 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEEEEE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCC-CCeEEEEEEeCCEEEEEE
Confidence            3699999999999999999999999999999998743    33567889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEeeeccccccCCCCc
Q 004835          277 EHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       277 E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      ||+.++.+....   ..+++..+..++.||+.||.|||++||+||||||+||||+..  ...+||+|||++......   
T Consensus       116 e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~---  192 (494)
T 3lij_A          116 ECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ---  192 (494)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTT---
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCC---
Confidence            999998875543   248999999999999999999999999999999999999743  345999999998752100   


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       193 --------------------------------------------------------------------------------  192 (494)
T 3lij_A          193 --------------------------------------------------------------------------------  192 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       193 --------------------------------------------------------------------------------  192 (494)
T 3lij_A          193 --------------------------------------------------------------------------------  192 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                        ......+||+.|+|||++. . .++.++|||||||++|+|++|.+|
T Consensus       193 ----------------------------------~~~~~~~gt~~y~aPE~l~-~-~~~~~~DiwslG~il~~ll~g~~p  236 (494)
T 3lij_A          193 ----------------------------------KKMKERLGTAYYIAPEVLR-K-KYDEKCDVWSIGVILFILLAGYPP  236 (494)
T ss_dssp             ----------------------------------BCBCCCCSCTTTCCHHHHT-T-CBCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------------------------ccccccCCCcCeeCHHHHc-c-cCCCchhHHHHHHHHHHHHhCCCC
Confidence                                              0011346999999999984 3 379999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          592 FFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       592 F~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      |.+.+...+...+....              ..+             ....           +..+++.+.+||.+||.+
T Consensus       237 f~~~~~~~~~~~i~~~~--------------~~~-------------~~~~-----------~~~~s~~~~~li~~~L~~  278 (494)
T 3lij_A          237 FGGQTDQEILRKVEKGK--------------YTF-------------DSPE-----------WKNVSEGAKDLIKQMLQF  278 (494)
T ss_dssp             SCCSSHHHHHHHHHHTC--------------CCC-------------CSGG-----------GTTSCHHHHHHHHHHTCS
T ss_pred             CCCCCHHHHHHHHHhCC--------------CCC-------------Cchh-----------cccCCHHHHHHHHHHCCC
Confidence            99887765544332110              001             1111           246789999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCccch
Q 004835          672 NPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      ||.+|||+.|+|+||||+...
T Consensus       279 dp~~R~s~~e~l~hp~~~~~~  299 (494)
T 3lij_A          279 DSQRRISAQQALEHPWIKEMC  299 (494)
T ss_dssp             STTTSCCHHHHHTCHHHHHHH
T ss_pred             ChhhCccHHHHhcCcccccCc
Confidence            999999999999999998753

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.6e-42  Score=365.21  Aligned_cols=270  Identities=24%  Similarity=0.343  Sum_probs=215.1

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      .+.|++.+.||+|+||.||+|.+..+|+.||||++........+.+|+.++..+.|+| |+++++++...+..|+||||+
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~~  106 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPH-VVKYYGSYFKNTDLWIVMEYC  106 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTT-BCCEEEEEEETTEEEEEEECC
T ss_pred             hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCC-CccEEEEEEeCCEEEEEeecC
Confidence            3589999999999999999999999999999999987777778899999999999999 999999999999999999999


Q ss_pred             CCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccC
Q 004835          280 KHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATL  355 (728)
Q Consensus       280 ~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~  355 (728)
                      .++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++.......      
T Consensus       107 ~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~-~~~~~kl~dfg~~~~~~~~~------  179 (314)
T 3com_A          107 GAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLN-TEGHAKLADFGVAGQLTDTM------  179 (314)
T ss_dssp             TTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTCCEEECCCTTCEECBTTB------
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEEC-CCCCEEEeecccchhhhhhc------
Confidence            9988877653    489999999999999999999999999999999999999 66789999999986421000      


Q ss_pred             CCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCc
Q 004835          356 PGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTP  435 (728)
Q Consensus       356 ~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (728)
                                                                                                      
T Consensus       180 --------------------------------------------------------------------------------  179 (314)
T 3com_A          180 --------------------------------------------------------------------------------  179 (314)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCC
Q 004835          436 AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSD  515 (728)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  515 (728)
                                                                                                      
T Consensus       180 --------------------------------------------------------------------------------  179 (314)
T 3com_A          180 --------------------------------------------------------------------------------  179 (314)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 004835          516 LSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD  595 (728)
Q Consensus       516 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~  595 (728)
                                                    .......||+.|+|||++.+. .++.++|||||||++|+|++|..||.+.
T Consensus       180 ------------------------------~~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~il~~l~~g~~p~~~~  228 (314)
T 3com_A          180 ------------------------------AKRNTVIGTPFWMAPEVIQEI-GYNCVADIWSLGITAIEMAEGKPPYADI  228 (314)
T ss_dssp             ------------------------------SCBCCCCSCGGGCCHHHHSSS-CBCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ------------------------------cccCccCCCCCccChhhcCCC-CCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence                                          000133589999999999554 4699999999999999999999999876


Q ss_pred             ChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCC
Q 004835          596 PEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL  675 (728)
Q Consensus       596 ~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~  675 (728)
                      ........+....             ..                          ....+..++..+.+||.+||..||.+
T Consensus       229 ~~~~~~~~~~~~~-------------~~--------------------------~~~~~~~~~~~l~~li~~~l~~dp~~  269 (314)
T 3com_A          229 HPMRAIFMIPTNP-------------PP--------------------------TFRKPELWSDNFTDFVKQCLVKSPEQ  269 (314)
T ss_dssp             CHHHHHHHHHHSC-------------CC--------------------------CCSSGGGSCHHHHHHHHHHTCSCTTT
T ss_pred             ChHHHHHHHhcCC-------------Cc--------------------------ccCCcccCCHHHHHHHHHHccCChhh
Confidence            6533222111000             00                          01123456889999999999999999


Q ss_pred             CCCHHHHhcCCCCccchhcchHhHhhhccccc
Q 004835          676 RISAEDALKHEFFAPCHEMLRKQKLLRQGSSI  707 (728)
Q Consensus       676 Rpta~e~L~Hp~f~~~~~~~~~~~~~~~~~~~  707 (728)
                      |||+.++|+||||+........+.++......
T Consensus       270 Rpt~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  301 (314)
T 3com_A          270 RATATQLLQHPFVRSAKGVSILRDLINEAMDV  301 (314)
T ss_dssp             SCCHHHHTTSHHHHTCCCGGGGHHHHHHHC--
T ss_pred             CcCHHHHHhCHHHhcCCcchHHHHHhhhhhhh
Confidence            99999999999999887666666665544443

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=6.8e-43  Score=378.11  Aligned_cols=292  Identities=22%  Similarity=0.327  Sum_probs=220.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcC-----------CCCceEEecceEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFG-----------GKNFIIKYEGCFK  267 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~-----------h~n~Ivkl~~~~~  267 (728)
                      .++|.+.+.||+|+||.||+|++..+++.||||++.... ....+.+|+.++.++.           |++ |+++++++.
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~-i~~~~~~~~   96 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANH-ILKLLDHFN   96 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTT-BCCCCEEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccch-HHHHHHHhh
Confidence            468999999999999999999999999999999987543 3456788999999887           566 999999988


Q ss_pred             eCC----eeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeec-----CCCc
Q 004835          268 CGD----SDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSC-----KAVK  333 (728)
Q Consensus       268 ~~~----~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~-----~~~~  333 (728)
                      ..+    ..++||||+.+.+...+..    .+++..+..++.||+.||.|||++ ||+||||||+||||+.     ....
T Consensus        97 ~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~  176 (373)
T 1q8y_A           97 HKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQ  176 (373)
T ss_dssp             EEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEE
T ss_pred             ccCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcce
Confidence            654    7899999994444444332    288999999999999999999998 9999999999999962     2336


Q ss_pred             eEEEeeeccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCccccc
Q 004835          334 GYLIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNII  413 (728)
Q Consensus       334 ~kL~DFGlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~  413 (728)
                      +||+|||++.....                                                                  
T Consensus       177 ~kl~Dfg~a~~~~~------------------------------------------------------------------  190 (373)
T 1q8y_A          177 IKIADLGNACWYDE------------------------------------------------------------------  190 (373)
T ss_dssp             EEECCCTTCEETTB------------------------------------------------------------------
T ss_pred             EEEcccccccccCC------------------------------------------------------------------
Confidence            89999999864110                                                                  


Q ss_pred             ccCCCCCCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCC
Q 004835          414 NSQGADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITP  493 (728)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  493 (728)
                                                                                                      
T Consensus       191 --------------------------------------------------------------------------------  190 (373)
T 1q8y_A          191 --------------------------------------------------------------------------------  190 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCch
Q 004835          494 MPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKL  573 (728)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~  573 (728)
                                                                           .....+||+.|+|||++.+.. ++.++
T Consensus       191 -----------------------------------------------------~~~~~~~t~~y~aPE~~~~~~-~~~~~  216 (373)
T 1q8y_A          191 -----------------------------------------------------HYTNSIQTREYRSPEVLLGAP-WGCGA  216 (373)
T ss_dssp             -----------------------------------------------------CCCSCCSCGGGCCHHHHHTCC-CCTHH
T ss_pred             -----------------------------------------------------CCCCCCCCccccCcHHHhCCC-CCchH
Confidence                                                                 001235899999999996655 69999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCC-------hHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhh
Q 004835          574 DIWSAGVTLLYLMIGRTPFFGDP-------EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKL  646 (728)
Q Consensus       574 DIWSlG~il~eLltG~~PF~~~~-------~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (728)
                      |||||||++|+|++|+.||.+..       .+.+..++..+|..+.............|. .......+.......+...
T Consensus       217 Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  295 (373)
T 1q8y_A          217 DIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFN-SRGLLRNISKLKFWPLEDV  295 (373)
T ss_dssp             HHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBC-C--CBSSCCCCCBCCHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcC-Ccchhcccccccccchhhh
Confidence            99999999999999999998643       356788888888755433322111100111 1111122223333334445


Q ss_pred             hccCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchh
Q 004835          647 ITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       647 ~~~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      ......++..++.++.+||.+||..||++|||++|+|+||||++...
T Consensus       296 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  342 (373)
T 1q8y_A          296 LTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLG  342 (373)
T ss_dssp             HHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTT
T ss_pred             hhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhChhhhcccC
Confidence            55566677788899999999999999999999999999999998653

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=2.4e-43  Score=369.87  Aligned_cols=275  Identities=25%  Similarity=0.325  Sum_probs=191.7

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .....++|.+.+.||+|+||.||+|.+..+++.||||++...   .....+.+|+.++.++.|+| |+++++++...+..
T Consensus        10 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~   88 (303)
T 2vwi_A           10 WSINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN-IVSYYTSFVVKDEL   88 (303)
T ss_dssp             ---CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTT-BCCEEEEEESSSCE
T ss_pred             cccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCC-EeeEEEEEeecCCc
Confidence            334567999999999999999999999889999999998643   23456788999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhhc-----------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeec
Q 004835          273 CFVLEHVKHDRPEVLKKE-----------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNL  341 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~~-----------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGl  341 (728)
                      |+||||+.++++..+...           +++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||+
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~-~~~~~kl~dfg~  167 (303)
T 2vwi_A           89 WLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLG-EDGSVQIADFGV  167 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEC-TTCCEEECCCHH
T ss_pred             EEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEc-CCCCEEEEeccc
Confidence            999999999888766532           88999999999999999999999999999999999998 667899999999


Q ss_pred             cccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCC
Q 004835          342 AMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGS  421 (728)
Q Consensus       342 A~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~  421 (728)
                      +.........                                                                      
T Consensus       168 ~~~~~~~~~~----------------------------------------------------------------------  177 (303)
T 2vwi_A          168 SAFLATGGDI----------------------------------------------------------------------  177 (303)
T ss_dssp             HHHCC---------------------------------------------------------------------------
T ss_pred             hheeccCCCc----------------------------------------------------------------------
Confidence            8752110000                                                                      


Q ss_pred             CccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCc
Q 004835          422 GITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGI  501 (728)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (728)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (303)
T 2vwi_A          178 --------------------------------------------------------------------------------  177 (303)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHH
Q 004835          502 AVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVT  581 (728)
Q Consensus       502 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~i  581 (728)
                                                               ..........||+.|+|||++.+...++.++|||||||+
T Consensus       178 -----------------------------------------~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~i  216 (303)
T 2vwi_A          178 -----------------------------------------TRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGIT  216 (303)
T ss_dssp             ---------------------------------------------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHH
T ss_pred             -----------------------------------------cchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHH
Confidence                                                     000001134689999999999764557999999999999


Q ss_pred             HHHHhcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhH
Q 004835          582 LLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL  661 (728)
Q Consensus       582 l~eLltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  661 (728)
                      +|+|++|+.||.+........... .+            .......                   ..........++..+
T Consensus       217 l~~l~~g~~pf~~~~~~~~~~~~~-~~------------~~~~~~~-------------------~~~~~~~~~~~~~~~  264 (303)
T 2vwi_A          217 AIELATGAAPYHKYPPMKVLMLTL-QN------------DPPSLET-------------------GVQDKEMLKKYGKSF  264 (303)
T ss_dssp             HHHHHHSSCTTTTSCGGGHHHHHH-TS------------SCCCTTC------------------------CCCCCCCHHH
T ss_pred             HHHHHhCCCCCccCchhhHHHHHh-cc------------CCCcccc-------------------ccccchhhhhhhHHH
Confidence            999999999998766533221110 00            0000000                   001123345678899


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          662 FDLVDKCLTVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       662 ~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      .+||.+||..||.+|||+.++++||||++.....
T Consensus       265 ~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~~~~  298 (303)
T 2vwi_A          265 RKMISLCLQKDPEKRPTAAELLRHKFFQKAKNKE  298 (303)
T ss_dssp             HHHHHHHCCSSGGGSCCHHHHHTSTTC-------
T ss_pred             HHHHHHHccCChhhCcCHHHHhhChhhhcCCCCc
Confidence            9999999999999999999999999999876543

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.3e-43  Score=379.00  Aligned_cols=270  Identities=23%  Similarity=0.352  Sum_probs=213.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEc---CCCeEEEEEeccCc------CchhHHHHHHHHHHhcC-CCCceEEecceEEe
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRK---NDGTVVAIKCPHAN------ASKHYVSNELRMLERFG-GKNFIIKYEGCFKC  268 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~---~~g~~VAIK~i~~~------~~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~  268 (728)
                      .+++|++.+.||+|+||.||+|++.   .+|+.||||++...      .....+.+|+.++..+. |++ |+++++++..
T Consensus        52 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~-iv~~~~~~~~  130 (355)
T 1vzo_A           52 GIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPF-LVTLHYAFQT  130 (355)
T ss_dssp             CGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTT-BCCEEEEEEE
T ss_pred             cccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCc-eeEEEEEEee
Confidence            4679999999999999999999984   47999999998642      23455678999999995 666 9999999999


Q ss_pred             CCeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccc
Q 004835          269 GDSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVG  345 (728)
Q Consensus       269 ~~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~  345 (728)
                      ....|+||||+.++++..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+++..
T Consensus       131 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~-~~~~~kl~DfG~a~~~  209 (355)
T 1vzo_A          131 ETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLD-SNGHVVLTDFGLSKEF  209 (355)
T ss_dssp             TTEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTSCEEESCSSEEEEC
T ss_pred             CceEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEC-CCCcEEEeeCCCCeec
Confidence            999999999999988876653   389999999999999999999999999999999999999 6678999999999742


Q ss_pred             cCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccc
Q 004835          346 FDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITS  425 (728)
Q Consensus       346 ~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~  425 (728)
                      .....                                                                           
T Consensus       210 ~~~~~---------------------------------------------------------------------------  214 (355)
T 1vzo_A          210 VADET---------------------------------------------------------------------------  214 (355)
T ss_dssp             CGGGG---------------------------------------------------------------------------
T ss_pred             ccCCC---------------------------------------------------------------------------
Confidence            10000                                                                           


Q ss_pred             cccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccccc
Q 004835          426 AKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAG  505 (728)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (728)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (355)
T 1vzo_A          215 --------------------------------------------------------------------------------  214 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhcc-CCCCCchhHHHHHHHHHH
Q 004835          506 AGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRS-QHQGPKLDIWSAGVTLLY  584 (728)
Q Consensus       506 ~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~-~~~~~~~DIWSlG~il~e  584 (728)
                                                              ......+||+.|+|||++.+. ..++.++|||||||++|+
T Consensus       215 ----------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~e  254 (355)
T 1vzo_A          215 ----------------------------------------ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYE  254 (355)
T ss_dssp             ----------------------------------------GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHH
T ss_pred             ----------------------------------------CcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHH
Confidence                                                    001134689999999999753 346899999999999999


Q ss_pred             HhcCCCCCCCCChH-HHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHH
Q 004835          585 LMIGRTPFFGDPEQ-NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD  663 (728)
Q Consensus       585 LltG~~PF~~~~~~-~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d  663 (728)
                      |++|+.||...... ....+..                                       .+....+.++..++..+.+
T Consensus       255 ll~g~~pf~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~  295 (355)
T 1vzo_A          255 LLTGASPFTVDGEKNSQAEISR---------------------------------------RILKSEPPYPQEMSALAKD  295 (355)
T ss_dssp             HHHSSCTTSCTTSCCCHHHHHH---------------------------------------HHHHCCCCCCTTSCHHHHH
T ss_pred             HHHCCCCCccCCccchHHHHHH---------------------------------------HHhccCCCCCcccCHHHHH
Confidence            99999999754321 1111111                                       0111223445667889999


Q ss_pred             HHHHhcccCCCCCC-----CHHHHhcCCCCccchhcchHhHhhhcc
Q 004835          664 LVDKCLTVNPRLRI-----SAEDALKHEFFAPCHEMLRKQKLLRQG  704 (728)
Q Consensus       664 Li~~~L~~dP~~Rp-----ta~e~L~Hp~f~~~~~~~~~~~~~~~~  704 (728)
                      ||.+||..||.+||     |++|+++||||..+.+....++...+.
T Consensus       296 li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~~~~~l~~~~~~~p  341 (355)
T 1vzo_A          296 LIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAP  341 (355)
T ss_dssp             HHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHHHTTCSCCS
T ss_pred             HHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcCChhHhhhccCCCC
Confidence            99999999999999     999999999999988765555444433

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=8.9e-43  Score=362.48  Aligned_cols=144  Identities=25%  Similarity=0.368  Sum_probs=130.0

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|++.+.||+|+||.||+|++..+|+.||||++...     .....+.+|+.++.+++|+| |+++++++...+..|
T Consensus         9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~   87 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPS-ILELYNYFEDSNYVY   87 (278)
T ss_dssp             SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTT-BCCEEEEEECSSEEE
T ss_pred             ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCC-eEeEEEEEccCCeEE
Confidence            457899999999999999999999999999999998643     23466889999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~-~~~~~kl~dfg~~~~  161 (278)
T 3cok_A           88 LVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLT-RNMNIKIADFGLATQ  161 (278)
T ss_dssp             EEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEEC-TTCCEEECCCTTCEE
T ss_pred             EEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEc-CCCCEEEEeecceee
Confidence            9999999988877653    378999999999999999999999999999999999999 667899999999874

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=1.4e-42  Score=360.04  Aligned_cols=143  Identities=20%  Similarity=0.238  Sum_probs=123.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||.||+|++..+++.||||++...    .....+.+|+.++..+ .|+| |+++++++...+..|+|
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~-iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSH-VVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTT-BCCEEEEEEETTEEEEE
T ss_pred             chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCC-eeeeeeeeecCCeEEEE
Confidence            4799999999999999999999999999999998753    2345677899999999 8888 99999999999999999


Q ss_pred             EeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC------------------
Q 004835          276 LEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK------------------  330 (728)
Q Consensus       276 ~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~------------------  330 (728)
                      |||++++++..+..       .+++..++.++.||+.||.|||++||+||||||+|||++.+                  
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~  169 (289)
T 1x8b_A           90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASN  169 (289)
T ss_dssp             EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC--------------------
T ss_pred             EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccCC
Confidence            99999988876653       27999999999999999999999999999999999999832                  


Q ss_pred             CCceEEEeeecccc
Q 004835          331 AVKGYLIDFNLAMV  344 (728)
Q Consensus       331 ~~~~kL~DFGlA~~  344 (728)
                      ...++|+|||++..
T Consensus       170 ~~~~kl~Dfg~~~~  183 (289)
T 1x8b_A          170 KVMFKIGDLGHVTR  183 (289)
T ss_dssp             CCCEEECCCTTCEE
T ss_pred             ceEEEEcccccccc
Confidence            23567777777653

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.6e-42  Score=362.08  Aligned_cols=251  Identities=21%  Similarity=0.339  Sum_probs=209.6

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|++.+.||+|+||.||+|++..+++.||||++...     .....+.+|+.++..++|+| |+++++++...+..|
T Consensus        12 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~   90 (284)
T 2vgo_A           12 TIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPN-ILRMYNYFHDRKRIY   90 (284)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSEEE
T ss_pred             hhhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCC-EeeEEEEEEcCCEEE
Confidence            467999999999999999999999999999999998642     23456889999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.++.+..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++......  
T Consensus        91 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~-~~~~~kl~Dfg~~~~~~~~--  167 (284)
T 2vgo_A           91 LMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMG-YKGELKIADFGWSVHAPSL--  167 (284)
T ss_dssp             EEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEEC-TTCCEEECCCTTCEECSSS--
T ss_pred             EEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEc-CCCCEEEecccccccCccc--
Confidence            9999999887766543   389999999999999999999999999999999999998 6668999999998641100  


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (284)
T 2vgo_A          168 --------------------------------------------------------------------------------  167 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       168 --------------------------------------------------------------------------------  167 (284)
T 2vgo_A          168 --------------------------------------------------------------------------------  167 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                          ......||+.|+|||++.+.. ++.++|||||||++|+|++|..
T Consensus       168 ------------------------------------~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~il~~l~~g~~  210 (284)
T 2vgo_A          168 ------------------------------------RRRTMCGTLDYLPPEMIEGKT-HDEKVDLWCAGVLCYEFLVGMP  210 (284)
T ss_dssp             ------------------------------------CBCCCCSCGGGCCHHHHTTCC-BCTTHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------------ccccccCCCCcCCHHHhccCC-CCcccchhhHHHHHHHHHHCCC
Confidence                                                001235899999999996554 6999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.........+.                                          .....++..++..+.+||.+||.
T Consensus       211 pf~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~li~~~l~  248 (284)
T 2vgo_A          211 PFDSPSHTETHRRIV------------------------------------------NVDLKFPPFLSDGSKDLISKLLR  248 (284)
T ss_dssp             TTCCSSHHHHHHHHH------------------------------------------TTCCCCCTTSCHHHHHHHHHHSC
T ss_pred             CCCCCCHhHHHHHHh------------------------------------------ccccCCCCcCCHHHHHHHHHHhh
Confidence            998766544322211                                          01122335678899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccch
Q 004835          671 VNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      .||.+|||++++++||||+...
T Consensus       249 ~~p~~Rps~~~ll~h~~~~~~~  270 (284)
T 2vgo_A          249 YHPPQRLPLKGVMEHPWVKANS  270 (284)
T ss_dssp             SSGGGSCCHHHHHTCHHHHHHC
T ss_pred             cCHhhCCCHHHHhhCHHHHhhc
Confidence            9999999999999999998643

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=1.3e-42  Score=367.84  Aligned_cols=143  Identities=22%  Similarity=0.246  Sum_probs=125.4

Q ss_pred             CCeeEE-EEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVE-EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~-~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +.|++. +.||+|+||.||+|++..+++.||||++...  .....+.+|+.++.++ .|+| |+++++++...+..|+||
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~-i~~~~~~~~~~~~~~lv~   90 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRN-VLELIEFFEEEDRFYLVF   90 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTT-BCCEEEEEEETTEEEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCC-eeeEEEEEeeCCEEEEEE
Confidence            579885 7899999999999999999999999998654  3356788999999985 6888 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC--ceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV--KGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~--~~kL~DFGlA~~  344 (728)
                      ||+.++++..+..   .+++..++.++.||+.||+|||++||+||||||+|||++.++.  .+||+|||++..
T Consensus        91 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~  163 (316)
T 2ac3_A           91 EKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSG  163 (316)
T ss_dssp             ECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-
T ss_pred             EcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccc
Confidence            9999888776653   3899999999999999999999999999999999999984432  389999999864

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=2.2e-42  Score=370.19  Aligned_cols=260  Identities=20%  Similarity=0.255  Sum_probs=209.2

Q ss_pred             CCeeEE-EEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVE-EEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~-~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      +.|.+. +.||+|+||.||+|++..+|+.||||++...    .....+.+|+.++..+.|+++|+++++++......|+|
T Consensus        28 ~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv  107 (327)
T 3lm5_A           28 NFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILI  107 (327)
T ss_dssp             HHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEE
Confidence            357777 8999999999999999999999999998753    23457889999999997644499999999999999999


Q ss_pred             EeccCCCChHHHh-----hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec--CCCceEEEeeeccccccCC
Q 004835          276 LEHVKHDRPEVLK-----KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC--KAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       276 ~E~~~~~~l~~l~-----~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~--~~~~~kL~DFGlA~~~~~~  348 (728)
                      |||+.++.+..+.     ..+++..++.++.||+.||.|||++||+||||||+|||++.  ..+.+||+|||++......
T Consensus       108 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  187 (327)
T 3lm5_A          108 LEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA  187 (327)
T ss_dssp             EECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---
T ss_pred             EEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCc
Confidence            9999998877664     33889999999999999999999999999999999999984  2567999999999752100


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (327)
T 3lm5_A          188 --------------------------------------------------------------------------------  187 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (327)
T 3lm5_A          188 --------------------------------------------------------------------------------  187 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                           ......+||+.|+|||++.+.. ++.++|||||||++|+|++|
T Consensus       188 -------------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~il~~ll~g  229 (327)
T 3lm5_A          188 -------------------------------------CELREIMGTPEYLAPEILNYDP-ITTATDMWNIGIIAYMLLTH  229 (327)
T ss_dssp             -------------------------------------------CCCGGGCCHHHHTTCC-CCTHHHHHHHHHHHHHHHHS
T ss_pred             -------------------------------------cccccccCCcCccCCeeecCCC-CCchhhHHHHHHHHHHHHhC
Confidence                                                 0001245899999999995554 69999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          589 RTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       589 ~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      +.||.+.........+....              ..+                        .......+++.+.+||.+|
T Consensus       230 ~~pf~~~~~~~~~~~i~~~~--------------~~~------------------------~~~~~~~~~~~~~~li~~~  271 (327)
T 3lm5_A          230 TSPFVGEDNQETYLNISQVN--------------VDY------------------------SEETFSSVSQLATDFIQSL  271 (327)
T ss_dssp             SCSSCCSSHHHHHHHHHHTC--------------CCC------------------------CTTTTTTSCHHHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHhcc--------------ccc------------------------CchhhcccCHHHHHHHHHH
Confidence            99998877654433222111              000                        1122346788999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCccchhcch
Q 004835          669 LTVNPRLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      |..||++|||++++|+||||+++.....
T Consensus       272 L~~dP~~Rpt~~~ll~h~~~~~~~~~~~  299 (327)
T 3lm5_A          272 LVKNPEKRPTAEICLSHSWLQQWDFENL  299 (327)
T ss_dssp             SCSSGGGSCCHHHHTTCGGGCCCCTTCC
T ss_pred             cCCChhhCcCHHHHhCCHhhcccccccc
Confidence            9999999999999999999998765433

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.6e-42  Score=359.74  Aligned_cols=252  Identities=24%  Similarity=0.334  Sum_probs=204.0

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..++|.+.+.||+|+||.||+|.+..+|+.||||++...     .....+.+|+.+++.++|+| |+++++++...+..|
T Consensus         9 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~   87 (276)
T 2h6d_A            9 KIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPH-IIKLYQVISTPTDFF   87 (276)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSEEE
T ss_pred             eeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCC-EeEEEEEEecCCeEE
Confidence            357899999999999999999999989999999998642     23456889999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++....... 
T Consensus        88 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~-~~~~~~l~dfg~~~~~~~~~-  165 (276)
T 2h6d_A           88 MVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLD-AHMNAKIADFGLSNMMSDGE-  165 (276)
T ss_dssp             EEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEEC-TTSCEEECCCCGGGCCCC---
T ss_pred             EEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEEC-CCCCEEEeecccccccCCCc-
Confidence            9999999888876653   489999999999999999999999999999999999999 66789999999986421000 


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (276)
T 2h6d_A          166 --------------------------------------------------------------------------------  165 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (276)
T 2h6d_A          166 --------------------------------------------------------------------------------  165 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                          ......||+.|+|||++.+....+.++|||||||++|+|++|..
T Consensus       166 ------------------------------------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~  209 (276)
T 2h6d_A          166 ------------------------------------FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTL  209 (276)
T ss_dssp             -----------------------------------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------------ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCC
Confidence                                                00123589999999999766555789999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.....+...+..                                          ....++..++..+.+||.+||.
T Consensus       210 p~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~l~~li~~~l~  247 (276)
T 2h6d_A          210 PFDDEHVPTLFKKIRG------------------------------------------GVFYIPEYLNRSVATLLMHMLQ  247 (276)
T ss_dssp             SSCCSSHHHHHHHHHH------------------------------------------CCCCCCTTSCHHHHHHHHHHTC
T ss_pred             CCCCCcHHHHHHHhhc------------------------------------------CcccCchhcCHHHHHHHHHHcc
Confidence            9987765544332210                                          1112234567899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccc
Q 004835          671 VNPRLRISAEDALKHEFFAPC  691 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~  691 (728)
                      .||++|||+.|+++||||++.
T Consensus       248 ~~p~~Rps~~~~l~h~~~~~~  268 (276)
T 2h6d_A          248 VDPLKRATIKDIREHEWFKQD  268 (276)
T ss_dssp             SSGGGSCCHHHHHHSHHHHTT
T ss_pred             CChhhCCCHHHHHhChhhccC
Confidence            999999999999999999864

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=4.7e-43  Score=395.36  Aligned_cols=254  Identities=30%  Similarity=0.405  Sum_probs=210.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||.||+|++..+|+.||||++...     .....+.+|+.++++++|+| |+++++++......|+|
T Consensus        26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~lv  104 (484)
T 3nyv_A           26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPN-IMKLYEFFEDKGYFYLV  104 (484)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEEEE
T ss_pred             CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCC-CCcEEEEEEeCCEEEEE
Confidence            5799999999999999999999999999999998542     34567889999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec--CCCceEEEeeeccccccCCCC
Q 004835          276 LEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC--KAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       276 ~E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~--~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      |||+.++.+....   ..+++..+..++.||+.||.|||++||+||||||+|||++.  .++.+||+|||++....... 
T Consensus       105 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-  183 (484)
T 3nyv_A          105 GEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASK-  183 (484)
T ss_dssp             ECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCC-
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccccc-
Confidence            9999998876554   24899999999999999999999999999999999999952  45779999999997521000 


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (484)
T 3nyv_A          184 --------------------------------------------------------------------------------  183 (484)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (484)
T 3nyv_A          184 --------------------------------------------------------------------------------  183 (484)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                          .....+||+.|+|||++.+  .++.++|||||||++|+|++|.+
T Consensus       184 ------------------------------------~~~~~~gt~~y~aPE~~~~--~~~~~~DiwslG~il~~ll~g~~  225 (484)
T 3nyv_A          184 ------------------------------------KMKDKIGTAYYIAPEVLHG--TYDEKCDVWSTGVILYILLSGCP  225 (484)
T ss_dssp             ------------------------------------SHHHHTTGGGTCCHHHHHT--CCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------------ccccCCCCccccCceeecC--CCCCcceeHHHHHHHHHHHHCCC
Confidence                                                0012358999999999855  37999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.+...+...+.. |             ...             .....|           ..+++.+.+||.+||.
T Consensus       226 pf~~~~~~~~~~~i~~-~-------------~~~-------------~~~~~~-----------~~~s~~~~~li~~~L~  267 (484)
T 3nyv_A          226 PFNGANEYDILKKVEK-G-------------KYT-------------FELPQW-----------KKVSESAKDLIRKMLT  267 (484)
T ss_dssp             SSCCSSHHHHHHHHHH-C-------------CCC-------------CCSGGG-----------GGSCHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHc-C-------------CCC-------------CCCccc-----------ccCCHHHHHHHHHHCC
Confidence            9998877554433321 0             000             111122           4678999999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccch
Q 004835          671 VNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      +||.+|||+.|+|+||||+...
T Consensus       268 ~dp~~R~s~~e~l~h~~~~~~~  289 (484)
T 3nyv_A          268 YVPSMRISARDALDHEWIQTYT  289 (484)
T ss_dssp             SSGGGSCCHHHHHTSHHHHHHT
T ss_pred             CChhHCcCHHHHhhChhhcccc
Confidence            9999999999999999998654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=5.7e-43  Score=378.56  Aligned_cols=143  Identities=26%  Similarity=0.369  Sum_probs=129.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .++|++.+.||+|+||.||+|++..+++.||+|++.....   ...+.+|+.++..++|+| |+++++++..++..|+||
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~  110 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY-IVGFYGAFYSDGEISICM  110 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTT-BCCEEEEEEETTEEEEEE
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCC-EEEEeEEEEECCEEEEEE
Confidence            3589999999999999999999999999999999875432   356789999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.++++..+..   .+++..+..++.||+.||.|||++ ||+||||||+||||+ .++.++|+|||++..
T Consensus       111 e~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~-~~~~~kl~Dfg~~~~  181 (360)
T 3eqc_A          111 EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVN-SRGEIKLCDFGVSGQ  181 (360)
T ss_dssp             CCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEEC-TTCCEEECCCCCCHH
T ss_pred             ECCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEEC-CCCCEEEEECCCCcc
Confidence            9999988877654   489999999999999999999996 999999999999999 667899999999864

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=1.5e-42  Score=361.26  Aligned_cols=257  Identities=24%  Similarity=0.362  Sum_probs=209.0

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--------chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ++|++.+.||+|+||.||+|++..+|+.||+|++....        ....+.+|+.++.++.|+| |+++++++......
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~   83 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPN-IITLHDIFENKTDV   83 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCC-eeehhheecCCCeE
Confidence            46999999999999999999999999999999886432        2567889999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC---CceEEEeeecccccc
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA---VKGYLIDFNLAMVGF  346 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~---~~~kL~DFGlA~~~~  346 (728)
                      |+||||+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+||+++.++   ..++|+|||++....
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~  163 (283)
T 3bhy_A           84 VLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIE  163 (283)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC
T ss_pred             EEEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceecc
Confidence            99999999888877653   389999999999999999999999999999999999998433   279999999986421


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ...                                                                             
T Consensus       164 ~~~-----------------------------------------------------------------------------  166 (283)
T 3bhy_A          164 AGN-----------------------------------------------------------------------------  166 (283)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (283)
T 3bhy_A          167 --------------------------------------------------------------------------------  166 (283)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                              ......||+.|+|||++.+.. ++.++|||||||++|+|+
T Consensus       167 ----------------------------------------~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~il~~l~  205 (283)
T 3bhy_A          167 ----------------------------------------EFKNIFGTPEFVAPEIVNYEP-LGLEADMWSIGVITYILL  205 (283)
T ss_dssp             ---------------------------------------------CCCGGGCCHHHHTTCC-CCTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------cccccCCCcCccCcceecCCC-CCcchhhhhHHHHHHHHH
Confidence                                                    001235899999999985544 699999999999999999


Q ss_pred             cCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          587 IGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       587 tG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      +|..||.+.........+...              ...+                        .......++..+.+||.
T Consensus       206 ~g~~p~~~~~~~~~~~~~~~~--------------~~~~------------------------~~~~~~~~~~~~~~li~  247 (283)
T 3bhy_A          206 SGASPFLGETKQETLTNISAV--------------NYDF------------------------DEEYFSNTSELAKDFIR  247 (283)
T ss_dssp             HSSCTTCCSSHHHHHHHHHTT--------------CCCC------------------------CHHHHTTCCHHHHHHHH
T ss_pred             HCCCCCCCcchHHHHHHhHhc--------------ccCC------------------------cchhcccCCHHHHHHHH
Confidence            999999887765443322100              0001                        01123457889999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      +||..||++|||+.++|+||||+.+...
T Consensus       248 ~~l~~dp~~Rps~~~~l~h~~~~~~~~~  275 (283)
T 3bhy_A          248 RLLVKDPKRRMTIAQSLEHSWIKAIRRR  275 (283)
T ss_dssp             TTSCSSGGGSCCHHHHHHCHHHHHHHHC
T ss_pred             HHccCCHhHCcCHHHHHhCHHHHHHHHH
Confidence            9999999999999999999999987643

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=6.6e-42  Score=373.11  Aligned_cols=142  Identities=21%  Similarity=0.300  Sum_probs=127.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----------hhHHHHHHHHHHhc-CCCCceEEecceEEeC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----------KHYVSNELRMLERF-GGKNFIIKYEGCFKCG  269 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----------~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~  269 (728)
                      ++|.+.+.||+|+||.||+|++..+|+.||||++.....          ...+.+|+.++.++ .|++ |+++++++...
T Consensus        94 ~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~-iv~~~~~~~~~  172 (365)
T 2y7j_A           94 QKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPH-IITLIDSYESS  172 (365)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTT-BCCEEEEEEBS
T ss_pred             hhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCC-EeEEEEEEeeC
Confidence            579999999999999999999998999999999865321          34577899999999 6888 99999999999


Q ss_pred             CeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          270 DSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ...|+||||+.++.+..+..   .+++..+..++.||+.||.|||+.||+||||||+|||++ .++.++|+|||++..
T Consensus       173 ~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~-~~~~ikl~DfG~~~~  249 (365)
T 2y7j_A          173 SFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLD-DNMQIRLSDFGFSCH  249 (365)
T ss_dssp             SEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTCCEEECCCTTCEE
T ss_pred             CEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEC-CCCCEEEEecCcccc
Confidence            99999999999988876653   489999999999999999999999999999999999999 667899999999864

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=8e-43  Score=374.22  Aligned_cols=142  Identities=22%  Similarity=0.333  Sum_probs=124.5

Q ss_pred             CCeeEE---EEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcC-CCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVE---EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFG-GKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~---~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ++|++.   +.||+|+||.||+|.+..+|+.||||++... ....+.+|+.++..+. |+| |+++++++.+....|+||
T Consensus         8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~e~~~l~~l~~h~n-iv~~~~~~~~~~~~~lv~   85 (325)
T 3kn6_A            8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR-MEANTQKEITALKLCEGHPN-IVKLHEVFHDQLHTFLVM   85 (325)
T ss_dssp             HHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGG-GHHHHHHHHHHHHHTTTCTT-BCCEEEEEECSSEEEEEE
T ss_pred             hccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChh-hhhhHHHHHHHHHHhcCCCC-eeEEEEEEEcCCEEEEEE
Confidence            456665   7899999999999999999999999998654 3456778999999998 887 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC--CceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA--VKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~--~~~kL~DFGlA~~  344 (728)
                      ||+.++++..+..   .+++..++.++.||+.||.|||++||+||||||+|||++.++  ..+||+|||++..
T Consensus        86 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~  158 (325)
T 3kn6_A           86 ELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARL  158 (325)
T ss_dssp             CCCCSCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEE
T ss_pred             EccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEecccccee
Confidence            9999988876653   389999999999999999999999999999999999998433  2799999999974

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=1.4e-42  Score=383.58  Aligned_cols=142  Identities=21%  Similarity=0.205  Sum_probs=122.6

Q ss_pred             CCCCeeEE-EEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhc-CCCCceEEecceEEe----CCee
Q 004835          199 NFESFIVE-EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-GGKNFIIKYEGCFKC----GDSD  272 (728)
Q Consensus       199 ~~~~y~i~-~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~----~~~~  272 (728)
                      .+++|.+. +.||+|+||+||+|++..+|+.||||++..   ...+.+|+.++.++ +|+| |++++++|..    ...+
T Consensus        59 ~~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~---~~~~~~E~~~~~~~~~hp~-iv~l~~~~~~~~~~~~~~  134 (400)
T 1nxk_A           59 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---CPKARREVELHWRASQCPH-IVRIVDVYENLYAGRKCL  134 (400)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---SHHHHHHHHHHHHHTTSTT-BCCEEEEEEEEETTEEEE
T ss_pred             ccccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc---chhHHHHHHHHHHhcCCCC-cceEeEEEeecccCCcEE
Confidence            35789887 789999999999999999999999999864   34567899887554 6777 9999998875    5678


Q ss_pred             EEEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~DFGlA~~  344 (728)
                      |+||||+.++++..++.     .+++..++.|+.||+.||.|||++||+||||||+||||+..  ++.+||+|||+++.
T Consensus       135 ~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~  213 (400)
T 1nxk_A          135 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKE  213 (400)
T ss_dssp             EEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             EEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccc
Confidence            99999999988776653     28899999999999999999999999999999999999843  57899999999874

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.7e-42  Score=368.80  Aligned_cols=142  Identities=23%  Similarity=0.320  Sum_probs=126.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCC--eeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD--SDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~--~~~LV  275 (728)
                      ++|.+.+.||+|+||+||+|++..+|+.||||++...   .....+.+|+.++++++|+| |+++++++....  ..|+|
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~~~lv   87 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN-IVKLFAIEEETTTRHKVLI   87 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTT-BCCEEEEEECTTTCCEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCC-cceEEEEeecCCCceEEEE
Confidence            5799999999999999999999999999999998753   33466789999999999999 999999988655  78999


Q ss_pred             EeccCCCChHHHhhc------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEe----ecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKKE------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLF----SCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~~------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILl----d~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++++..+...      +++..++.++.||+.||.|||++||+||||||+||||    + ....+||+|||++..
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~-~~~~~kL~Dfg~a~~  165 (319)
T 4euu_A           88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGED-GQSVYKLTDFGAARE  165 (319)
T ss_dssp             EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTT-SCEEEEECCCTTCEE
T ss_pred             EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCC-CCceEEEccCCCcee
Confidence            999999888777643      8999999999999999999999999999999999998    4 556799999999975

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=9.1e-42  Score=357.95  Aligned_cols=144  Identities=22%  Similarity=0.288  Sum_probs=128.9

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----------chhHHHHHHHHHHhcC-CCCceEEecceE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----------SKHYVSNELRMLERFG-GKNFIIKYEGCF  266 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----------~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~  266 (728)
                      ..++|++.+.||+|+||.||+|.+..+|+.||||++....           ..+.+.+|+.++.++. |+| |+++++++
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~-i~~~~~~~   93 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPN-IIQLKDTY   93 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTT-BCCEEEEE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCC-Eeeeeeee
Confidence            4579999999999999999999999999999999986432           1345778999999996 888 99999999


Q ss_pred             EeCCeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          267 KCGDSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       267 ~~~~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      ......|+||||+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++.
T Consensus        94 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~-~~~~~kl~dfg~~~  172 (298)
T 1phk_A           94 ETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLD-DDMNIKLTDFGFSC  172 (298)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTCCEEECCCTTCE
T ss_pred             ccCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEc-CCCcEEEecccchh
Confidence            99999999999999988877653   389999999999999999999999999999999999998 66789999999986


Q ss_pred             c
Q 004835          344 V  344 (728)
Q Consensus       344 ~  344 (728)
                      .
T Consensus       173 ~  173 (298)
T 1phk_A          173 Q  173 (298)
T ss_dssp             E
T ss_pred             h
Confidence            4

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=9.9e-43  Score=363.39  Aligned_cols=145  Identities=21%  Similarity=0.287  Sum_probs=118.1

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCch----hHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK----HYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~----~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ...++|++.+.||+|+||+||+|++..+|+.||||++......    ..+..+...++.+.|+| |+++++++..++..|
T Consensus         4 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-iv~~~~~~~~~~~~~   82 (290)
T 3fme_A            4 VKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPF-TVTFYGALFREGDVW   82 (290)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSSEE
T ss_pred             ccHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCe-EEEEeeeeeccCCEE
Confidence            3457899999999999999999999999999999998754322    22334445577888988 999999999999999


Q ss_pred             EEEeccCCCChHHHh------hcCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLK------KEIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~------~~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+++++...+.      ..+++..++.++.||+.||.|||++ ||+||||||+|||++ .++.+||+|||++..
T Consensus        83 lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~-~~~~~kl~Dfg~~~~  159 (290)
T 3fme_A           83 ICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLIN-ALGQVKMCDFGISGY  159 (290)
T ss_dssp             EEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEEC-TTCCEEBCCC-----
T ss_pred             EEEehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEEC-CCCCEEEeecCCccc
Confidence            999999975544443      2489999999999999999999998 999999999999999 667899999999864

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=2.8e-42  Score=357.37  Aligned_cols=143  Identities=24%  Similarity=0.328  Sum_probs=129.0

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      +++|++.+.||+|+||.||+|.+..+++.||||++....   ....+.+|+.++..++|+| |+++++++..++..|+||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~   84 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN-VVKFYGHRREGNIQYLFL   84 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTT-BCCEEEEEEETTEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCC-ceeeeeEEEcCCEEEEEE
Confidence            458999999999999999999999999999999986432   3466889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+||+++ .++.++|+|||++..
T Consensus        85 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~-~~~~~kl~dfg~~~~  154 (276)
T 2yex_A           85 EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD-ERDNLKISDFGLATV  154 (276)
T ss_dssp             ECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTCCEEECCCTTCEE
T ss_pred             EecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEc-cCCCEEEeeCCCccc
Confidence            9999877766653   488999999999999999999999999999999999999 667899999999874

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=4.9e-42  Score=364.62  Aligned_cols=280  Identities=27%  Similarity=0.381  Sum_probs=212.4

Q ss_pred             CCCeeEEEEecccCceEEEEEEEc-CCCeEEEEEeccCcC----chhHHHHHHHHHHhc---CCCCceEEecceEE----
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRK-NDGTVVAIKCPHANA----SKHYVSNELRMLERF---GGKNFIIKYEGCFK----  267 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~-~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L---~h~n~Ivkl~~~~~----  267 (728)
                      .++|++.+.||+|+||.||+|++. .+|+.||||++....    ....+.+|+.+++.+   .|+| |+++++++.    
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~-i~~~~~~~~~~~~   88 (326)
T 1blx_A           10 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPN-VVRLFDVCTVSRT   88 (326)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTT-BCCEEEEEEEEEC
T ss_pred             hhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCC-eEeeeeeeeeccc
Confidence            468999999999999999999995 678999999886422    234567888887776   7998 999999887    


Q ss_pred             -eCCeeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecc
Q 004835          268 -CGDSDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       268 -~~~~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                       .....++||||+.+++...+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++
T Consensus        89 ~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~-~~~~~kl~Dfg~~  167 (326)
T 1blx_A           89 DRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVT-SSGQIKLADFGLA  167 (326)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTCCEEECSCCSC
T ss_pred             CCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEc-CCCCEEEecCccc
Confidence             4567899999999754444432    288999999999999999999999999999999999998 6678999999998


Q ss_pred             ccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCC
Q 004835          343 MVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSG  422 (728)
Q Consensus       343 ~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~  422 (728)
                      ......                                                                          
T Consensus       168 ~~~~~~--------------------------------------------------------------------------  173 (326)
T 1blx_A          168 RIYSFQ--------------------------------------------------------------------------  173 (326)
T ss_dssp             CCCCGG--------------------------------------------------------------------------
T ss_pred             ccccCC--------------------------------------------------------------------------
Confidence            641100                                                                          


Q ss_pred             ccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcc
Q 004835          423 ITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIA  502 (728)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (728)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (326)
T 1blx_A          174 --------------------------------------------------------------------------------  173 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHH
Q 004835          503 VAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTL  582 (728)
Q Consensus       503 ~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il  582 (728)
                                                                 .......||+.|+|||++.+.. ++.++|||||||++
T Consensus       174 -------------------------------------------~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~il  209 (326)
T 1blx_A          174 -------------------------------------------MALTSVVVTLWYRAPEVLLQSS-YATPVDLWSVGCIF  209 (326)
T ss_dssp             -------------------------------------------GGGCCCCCCCTTCCHHHHTTCC-CCTHHHHHHHHHHH
T ss_pred             -------------------------------------------CCccccccccceeCHHHHhcCC-CCcchhHHHHHHHH
Confidence                                                       0001345899999999996554 69999999999999


Q ss_pred             HHHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhH
Q 004835          583 LYLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL  661 (728)
Q Consensus       583 ~eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  661 (728)
                      |+|++|+.||.+... +.+..++...|.+....+..    ....+.....     ....       .....+...++..+
T Consensus       210 ~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~-------~~~~~~~~~~~~~~  273 (326)
T 1blx_A          210 AEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPR----DVALPRQAFH-----SKSA-------QPIEKFVTDIDELG  273 (326)
T ss_dssp             HHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCT----TCSSCGGGSC-----CCCC-------CCGGGTCCSCCHHH
T ss_pred             HHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCcc----ccccchhhhc-----ccCc-------chhhhccccCCHHH
Confidence            999999999998776 55677777666432111000    0000000000     0000       00123446788999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          662 FDLVDKCLTVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       662 ~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      .+||.+||..||++|||+.|+|+||||+++....
T Consensus       274 ~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  307 (326)
T 1blx_A          274 KDLLLKCLTFNPAKRISAYSALSHPYFQDLERCK  307 (326)
T ss_dssp             HHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCCCC
T ss_pred             HHHHHHHcCCCcccCCCHHHHhcCccccccchhh
Confidence            9999999999999999999999999999876543

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=4e-42  Score=372.92  Aligned_cols=142  Identities=30%  Similarity=0.441  Sum_probs=126.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      +.|.+.+.||+|+||.||+|++..+|+.||||++.....     ...+.+|+.++.+++|+| |+++++++..++..|+|
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~~lv  132 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN-TIQYRGCYLREHTAWLV  132 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEEETTEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCC-EeeEEEEEEECCeEEEE
Confidence            359999999999999999999999999999999864321     245789999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.+++...+.   ..+++..+..++.||+.||.|||++||+||||||+||||+ .++.+||+|||++..
T Consensus       133 ~e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~-~~~~~kL~DfG~a~~  203 (348)
T 1u5q_A          133 MEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLS-EPGLVKLGDFGSASI  203 (348)
T ss_dssp             EECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEE-TTTEEEECCCTTCBS
T ss_pred             EecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEC-CCCCEEEeeccCcee
Confidence            9999976655553   2489999999999999999999999999999999999999 667899999999864

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=3.5e-42  Score=361.79  Aligned_cols=264  Identities=23%  Similarity=0.298  Sum_probs=210.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      .+.|++.+.||+|+||.||+|++..+|+.||+|++...  .....+.+|+.++..+.|+| |+++++++...+..|+|||
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e   96 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPY-IVKLLGAYYHDGKLWIMIE   96 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTT-BCCEEEEEECC-CEEEEEE
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCC-EeeeeeeeeeCCeEEEEEE
Confidence            46899999999999999999999999999999998643  34567889999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccc
Q 004835          278 HVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       278 ~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      |++++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++.......    
T Consensus        97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~-~~~~~kl~Dfg~~~~~~~~~----  171 (302)
T 2j7t_A           97 FCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMT-LEGDIRLADFGVSAKNLKTL----  171 (302)
T ss_dssp             CCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEC-TTSCEEECCCHHHHHHHHHH----
T ss_pred             eCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEC-CCCCEEEEECCCCccccccc----
Confidence            999998876643    489999999999999999999999999999999999998 66789999999975310000    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (302)
T 2j7t_A          172 --------------------------------------------------------------------------------  171 (302)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (302)
T 2j7t_A          172 --------------------------------------------------------------------------------  171 (302)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhh----ccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLF----RSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~----~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                      .......||+.|+|||++.    ....++.++|||||||++|+|++|.
T Consensus       172 --------------------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~  219 (302)
T 2j7t_A          172 --------------------------------QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIE  219 (302)
T ss_dssp             --------------------------------HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSS
T ss_pred             --------------------------------cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCC
Confidence                                            0001235899999999985    3445689999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          590 TPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       590 ~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      .||.+.+.......+.....                                       .....+..++..+.+||.+||
T Consensus       220 ~p~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~l~~li~~~l  260 (302)
T 2j7t_A          220 PPHHELNPMRVLLKIAKSDP---------------------------------------PTLLTPSKWSVEFRDFLKIAL  260 (302)
T ss_dssp             CTTTTSCHHHHHHHHHHSCC---------------------------------------CCCSSGGGSCHHHHHHHHHHS
T ss_pred             CCCccCCHHHHHHHHhccCC---------------------------------------cccCCccccCHHHHHHHHHHc
Confidence            99987765433221110000                                       001123456789999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchhcchHhHh
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHEMLRKQKL  700 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~~  700 (728)
                      ..||++|||+.++++||||+++.....-+..
T Consensus       261 ~~dp~~Rps~~~ll~h~~~~~~~~~~~~~~~  291 (302)
T 2j7t_A          261 DKNPETRPSAAQLLEHPFVSSITSNKALREL  291 (302)
T ss_dssp             CSCTTTSCCHHHHTTSTTTTTCCCCHHHHHH
T ss_pred             ccChhhCCCHHHHhcChHHhhhccchhHHHH
Confidence            9999999999999999999998865544433

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=1.4e-42  Score=369.75  Aligned_cols=269  Identities=29%  Similarity=0.411  Sum_probs=209.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----------chhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      ++|.+.+.||+|+||.||+|++..+++.||||++....          ....+.+|+.++.++.|+| |+++++++....
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~   88 (322)
T 2ycf_A           10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPC-IIKIKNFFDAED   88 (322)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTT-BCCEEEEEESSS
T ss_pred             hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCC-CceEeeEEcCCc
Confidence            47999999999999999999999999999999986432          1234789999999999999 999999987654


Q ss_pred             eeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC--CceEEEeeeccccc
Q 004835          271 SDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA--VKGYLIDFNLAMVG  345 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~--~~~kL~DFGlA~~~  345 (728)
                       .|+||||+.++.+..+..   .+++..++.++.||+.||.|||++||+||||||+|||++.++  ..+||+|||++...
T Consensus        89 -~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~  167 (322)
T 2ycf_A           89 -YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL  167 (322)
T ss_dssp             -EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEEC
T ss_pred             -eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccceec
Confidence             899999999877655442   488999999999999999999999999999999999998433  34999999998752


Q ss_pred             cCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccc
Q 004835          346 FDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITS  425 (728)
Q Consensus       346 ~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~  425 (728)
                      ....                                                                            
T Consensus       168 ~~~~----------------------------------------------------------------------------  171 (322)
T 2ycf_A          168 GETS----------------------------------------------------------------------------  171 (322)
T ss_dssp             CCCH----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            1000                                                                            


Q ss_pred             cccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccccc
Q 004835          426 AKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAG  505 (728)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (322)
T 2ycf_A          172 --------------------------------------------------------------------------------  171 (322)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhh--ccCCCCCchhHHHHHHHHH
Q 004835          506 AGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLF--RSQHQGPKLDIWSAGVTLL  583 (728)
Q Consensus       506 ~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~--~~~~~~~~~DIWSlG~il~  583 (728)
                                                               ......||+.|+|||++.  +...++.++|||||||++|
T Consensus       172 -----------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~  210 (322)
T 2ycf_A          172 -----------------------------------------LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILF  210 (322)
T ss_dssp             -----------------------------------------HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHH
T ss_pred             -----------------------------------------ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHH
Confidence                                                     000234899999999985  3445789999999999999


Q ss_pred             HHhcCCCCCCCCChH-HHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHH
Q 004835          584 YLMIGRTPFFGDPEQ-NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF  662 (728)
Q Consensus       584 eLltG~~PF~~~~~~-~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (728)
                      +|++|..||.+.... .+...+.. |             ...+                        .+..+..++..+.
T Consensus       211 ~l~~g~~pf~~~~~~~~~~~~~~~-~-------------~~~~------------------------~~~~~~~~~~~~~  252 (322)
T 2ycf_A          211 ICLSGYPPFSEHRTQVSLKDQITS-G-------------KYNF------------------------IPEVWAEVSEKAL  252 (322)
T ss_dssp             HHHHSSCSSCSTTCSSCHHHHHHH-T-------------CCCC------------------------CHHHHTTSCHHHH
T ss_pred             HHHhCCCCCcccchHHHHHHHHHh-C-------------cccc------------------------CchhhhhcCHHHH
Confidence            999999999764432 22222210 1             0000                        1122346789999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCccchhcchHhHhhhcccc
Q 004835          663 DLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSS  706 (728)
Q Consensus       663 dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~~~~~~~~  706 (728)
                      +||.+||..||++|||+.++|+||||++.......+.++.....
T Consensus       253 ~li~~~l~~dP~~Rps~~~~l~h~~~~~~~~~~~~~~~~~~~~~  296 (322)
T 2ycf_A          253 DLVKKLLVVDPKARFTTEEALRHPWLQDEDMKRKFQDLLSEENE  296 (322)
T ss_dssp             HHHHHHSCSSTTTSCCHHHHHTSGGGCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcccCHhhCCCHHHHhhCcCcCCHHHHHHHHHHhccccc
Confidence            99999999999999999999999999988776666666655443

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=7.3e-42  Score=358.17  Aligned_cols=144  Identities=20%  Similarity=0.270  Sum_probs=126.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEe----CCe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKC----GDS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~----~~~  271 (728)
                      -..|.+.+.||+|+||.||+|.+..++..||+|++....    ....+.+|+.+++.++|+| |+++++++..    ...
T Consensus        25 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~~~  103 (290)
T 1t4h_A           25 GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPN-IVRFYDSWESTVKGKKC  103 (290)
T ss_dssp             SCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTT-BCCEEEEEEEESSSCEE
T ss_pred             ceeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCC-eeeeeeeeccccCCCce
Confidence            346999999999999999999999999999999986432    2356789999999999999 9999998875    356


Q ss_pred             eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCC--cEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQG--IVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~g--IIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .|+||||+.++++..+..   .+++..++.++.||+.||.|||++|  |+||||||+|||++..++.+||+|||++..
T Consensus       104 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~  181 (290)
T 1t4h_A          104 IVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             EEEEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccc
Confidence            899999999988877764   3899999999999999999999999  999999999999985677899999999864

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=4.3e-42  Score=362.74  Aligned_cols=254  Identities=27%  Similarity=0.430  Sum_probs=206.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ++|.+.+.||+|+||.||+|++..+|+.||||++....  ....+.+|+.++..+.|+| |+++++++......|+||||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e~   87 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHEN-IVTLEDIYESTTHYYLVMQL   87 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTT-BCCEEEEEECSSEEEEEECC
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCC-eeehhhhcccCCEEEEEEEc
Confidence            47999999999999999999999999999999987542  3456889999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee--cCCCceEEEeeeccccccCCCCccc
Q 004835          279 VKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS--CKAVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       279 ~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld--~~~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      +.++.+..+..   .+++..+..++.||+.||.|||++||+||||||+|||+.  .+++.++|+|||++......     
T Consensus        88 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~-----  162 (304)
T 2jam_A           88 VSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG-----  162 (304)
T ss_dssp             CCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB-----
T ss_pred             CCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC-----
Confidence            99888765542   389999999999999999999999999999999999993  15678999999998631000     


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (304)
T 2jam_A          163 --------------------------------------------------------------------------------  162 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (304)
T 2jam_A          163 --------------------------------------------------------------------------------  162 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                       .....+||+.|+|||++.+. .++.++|||||||++|+|++|..||.
T Consensus       163 ---------------------------------~~~~~~~~~~y~aPE~~~~~-~~~~~~Di~slG~il~~l~~g~~pf~  208 (304)
T 2jam_A          163 ---------------------------------IMSTACGTPGYVAPEVLAQK-PYSKAVDCWSIGVITYILLCGYPPFY  208 (304)
T ss_dssp             ---------------------------------TTHHHHSCCCBCCTTTBSSC-SCCHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ---------------------------------ccccccCCCCccChHHhccC-CCCchhhHHHHHHHHHHHHHCCCCCC
Confidence                                             00022489999999999554 46999999999999999999999998


Q ss_pred             CCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCC
Q 004835          594 GDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNP  673 (728)
Q Consensus       594 ~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP  673 (728)
                      +.....+...+.. +             ...+                        ...++..++..+.+||.+||..||
T Consensus       209 ~~~~~~~~~~i~~-~-------------~~~~------------------------~~~~~~~~~~~~~~li~~~l~~dp  250 (304)
T 2jam_A          209 EETESKLFEKIKE-G-------------YYEF------------------------ESPFWDDISESAKDFICHLLEKDP  250 (304)
T ss_dssp             TSCHHHHHHHHHH-C-------------CCCC------------------------CTTTTTTSCHHHHHHHHHHHCSST
T ss_pred             CCCHHHHHHHHHc-C-------------CCCC------------------------CccccccCCHHHHHHHHHHcCCCh
Confidence            8776544332211 0             0000                        112234678999999999999999


Q ss_pred             CCCCCHHHHhcCCCCccch
Q 004835          674 RLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       674 ~~Rpta~e~L~Hp~f~~~~  692 (728)
                      ++|||++|+|+||||.+..
T Consensus       251 ~~Rps~~~~l~h~~~~~~~  269 (304)
T 2jam_A          251 NERYTCEKALSHPWIDGNT  269 (304)
T ss_dssp             TTSCCHHHHHTSHHHHSSC
T ss_pred             hHCcCHHHHhcCccccCCC
Confidence            9999999999999998654

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.2e-42  Score=370.44  Aligned_cols=143  Identities=27%  Similarity=0.344  Sum_probs=121.2

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCC-CceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGK-NFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~-n~Ivkl~~~~~~~~~~~  273 (728)
                      .-+.|++.+.||+|+||.||+|.+. +++.||||++.....    ...+.+|+.++.++.|+ ++|+++++++..+...|
T Consensus         7 ~~~~y~i~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~   85 (343)
T 3dbq_A            7 KGRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY   85 (343)
T ss_dssp             SSCEEEEEEEESCCSSEEEEEEECT-TSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             ecCEEEEEEEEecCCCeEEEEEEeC-CCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEE
Confidence            3457999999999999999999984 689999999864322    35678999999999872 34999999999999999


Q ss_pred             EEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +|||+..+.+...+..  .+++..+..++.||+.||.|||++||+||||||+||||+ + +.+||+|||++..
T Consensus        86 lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~-~~~kl~DFG~a~~  156 (343)
T 3dbq_A           86 MVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-D-GMLKLIDFGIANQ  156 (343)
T ss_dssp             EEECCCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-T-TEEEECCCSSSCC
T ss_pred             EEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-C-CcEEEeecccccc
Confidence            9999655444444433  388999999999999999999999999999999999997 4 5699999999974

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=9e-42  Score=363.00  Aligned_cols=150  Identities=26%  Similarity=0.427  Sum_probs=130.7

Q ss_pred             ccccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhc-CCCCceEEecceEEe--
Q 004835          193 NAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERF-GGKNFIIKYEGCFKC--  268 (728)
Q Consensus       193 ~~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~--  268 (728)
                      ...+....++|++.+.||+|+||.||+|++..+|+.||||++... .....+.+|+.++.++ .|+| |+++++++..  
T Consensus        16 ~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~-i~~~~~~~~~~~   94 (326)
T 2x7f_A           16 LSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRN-IATYYGAFIKKN   94 (326)
T ss_dssp             CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTT-BCCEEEEEEECC
T ss_pred             chhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCC-eeeeeeEEeecc
Confidence            334445668999999999999999999999999999999998654 3456788999999999 6777 9999999976  


Q ss_pred             ----CCeeEEEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEee
Q 004835          269 ----GDSDCFVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDF  339 (728)
Q Consensus       269 ----~~~~~LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DF  339 (728)
                          ....|+||||+.++++..+..     .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+||
T Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~-~~~~~kl~Df  173 (326)
T 2x7f_A           95 PPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLT-ENAEVKLVDF  173 (326)
T ss_dssp             --CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEC-TTCCEEECCC
T ss_pred             CccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEc-CCCCEEEeeC
Confidence                468899999999988876653     388999999999999999999999999999999999998 6678999999


Q ss_pred             ecccc
Q 004835          340 NLAMV  344 (728)
Q Consensus       340 GlA~~  344 (728)
                      |++..
T Consensus       174 g~~~~  178 (326)
T 2x7f_A          174 GVSAQ  178 (326)
T ss_dssp             TTTC-
T ss_pred             cCcee
Confidence            99864

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=7.5e-42  Score=367.26  Aligned_cols=253  Identities=22%  Similarity=0.345  Sum_probs=210.6

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..++|.+.+.||+|+||.||+|++..+++.||+|++....     ..+.+.+|+.+++.+.|+| |+++++++...+..|
T Consensus        39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~  117 (335)
T 2owb_A           39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQH-VVGFHGFFEDNDFVF  117 (335)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSEEE
T ss_pred             cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEecCCeEE
Confidence            3568999999999999999999999999999999986432     3456789999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.++++..+..   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.+||+|||++....... 
T Consensus       118 lv~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~~kl~Dfg~~~~~~~~~-  195 (335)
T 2owb_A          118 VVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLN-EDLEVKIGDFGLATKVEYDG-  195 (335)
T ss_dssp             EEECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEC-TTCCEEECCCTTCEECCSTT-
T ss_pred             EEEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEc-CCCCEEEeeccCceecccCc-
Confidence            9999999988877653   389999999999999999999999999999999999999 66789999999987421000 


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       196 --------------------------------------------------------------------------------  195 (335)
T 2owb_A          196 --------------------------------------------------------------------------------  195 (335)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       196 --------------------------------------------------------------------------------  195 (335)
T 2owb_A          196 --------------------------------------------------------------------------------  195 (335)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                         .......||+.|+|||++.+.. ++.++|||||||++|+|++|+.
T Consensus       196 -----------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~Di~slG~il~~l~~g~~  239 (335)
T 2owb_A          196 -----------------------------------ERKKVLCGTPNYIAPEVLSKKG-HSFEVDVWSIGCIMYTLLVGKP  239 (335)
T ss_dssp             -----------------------------------CCBCCCCSCCSSCCHHHHHTSC-BCTHHHHHHHHHHHHHHHHSSC
T ss_pred             -----------------------------------ccccccCCCccccCHHHhccCC-CCchhhHHHHHHHHHHHHHCcC
Confidence                                               0011345899999999996554 6999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.........+.                                          .....++..++..+.+||.+||.
T Consensus       240 pf~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~li~~~l~  277 (335)
T 2owb_A          240 PFETSCLKETYLRIK------------------------------------------KNEYSIPKHINPVAASLIQKMLQ  277 (335)
T ss_dssp             TTCCSSHHHHHHHHH------------------------------------------HTCCCCCTTSCHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHh------------------------------------------cCCCCCCccCCHHHHHHHHHHcc
Confidence            998776543322221                                          01112334577899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccch
Q 004835          671 VNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      .||++|||+.|+|+||||+...
T Consensus       278 ~dp~~Rps~~ell~~~~~~~~~  299 (335)
T 2owb_A          278 TDPTARPTINELLNDEFFTSGY  299 (335)
T ss_dssp             SSGGGSCCGGGGGGSHHHHTSC
T ss_pred             CChhHCcCHHHHhcCccccCCC
Confidence            9999999999999999998754

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=6.6e-42  Score=359.22  Aligned_cols=253  Identities=22%  Similarity=0.345  Sum_probs=209.9

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..++|.+.+.||+|+||.||+|.+..+++.||+|++....     ..+.+.+|+.+++.+.|+| |+++++++...+..|
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~   91 (294)
T 2rku_A           13 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQH-VVGFHGFFEDNDFVF   91 (294)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSEEE
T ss_pred             cccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCC-EeeeeeeeccCCEEE
Confidence            3468999999999999999999999999999999986432     2456788999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++....... 
T Consensus        92 lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~-~~~~~kl~dfg~~~~~~~~~-  169 (294)
T 2rku_A           92 VVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLN-EDLEVKIGDFGLATKVEYDG-  169 (294)
T ss_dssp             EEEECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTCCEEECCCTTCEECCSTT-
T ss_pred             EEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEc-CCCCEEEEeccCceecccCc-
Confidence            9999999988877653   389999999999999999999999999999999999999 66789999999987421000 


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (294)
T 2rku_A          170 --------------------------------------------------------------------------------  169 (294)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (294)
T 2rku_A          170 --------------------------------------------------------------------------------  169 (294)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                         .......||+.|+|||++.+.. ++.++|||||||++|+|++|+.
T Consensus       170 -----------------------------------~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~~l~~l~~g~~  213 (294)
T 2rku_A          170 -----------------------------------ERKKVLCGTPNYIAPEVLSKKG-HSFEVDVWSIGCIMYTLLVGKP  213 (294)
T ss_dssp             -----------------------------------CCBCCCCSCCSSCCHHHHTTSC-BCTHHHHHHHHHHHHHHHHSSC
T ss_pred             -----------------------------------cccccccCCCCcCCcchhccCC-CCchhhHHHHHHHHHHHHhCCC
Confidence                                               0011345899999999995544 6899999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.........+.                                          .....++..++..+.+||.+||.
T Consensus       214 p~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~li~~~l~  251 (294)
T 2rku_A          214 PFETSCLKETYLRIK------------------------------------------KNEYSIPKHINPVAASLIQKMLQ  251 (294)
T ss_dssp             TTCCSSHHHHHHHHH------------------------------------------TTCCCCCTTSCHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHh------------------------------------------hccCCCccccCHHHHHHHHHHcc
Confidence            998876543322111                                          01112334577899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccch
Q 004835          671 VNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      .||++|||++|+|+||||++..
T Consensus       252 ~~p~~Rps~~~ll~~~~~~~~~  273 (294)
T 2rku_A          252 TDPTARPTINELLNDEFFTSGY  273 (294)
T ss_dssp             SSGGGSCCGGGGGGSHHHHTSC
T ss_pred             cChhhCcCHHHHhhChheecCC
Confidence            9999999999999999998654

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=5.2e-42  Score=373.62  Aligned_cols=142  Identities=15%  Similarity=0.090  Sum_probs=105.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----hhHHHHHHHHHHhc--CCCCceEEec-------ce
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHYVSNELRMLERF--GGKNFIIKYE-------GC  265 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----~~~~~~Ei~iL~~L--~h~n~Ivkl~-------~~  265 (728)
                      ...|.+.+.||+|+||.||+|++..+|+.||||++.....     ...+.+|+.++..+  .|+| |++++       ++
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~-iv~~~~~~~~p~d~  139 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPE-EARDRRRLLLPSDA  139 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChh-hhhhceeEEeeehh
Confidence            4469999999999999999999999999999999886432     34566775545444  5888 77654       33


Q ss_pred             EEeC-----------------CeeEEEEeccCCCChHHHhh----cCChHHH------HHHHHHHHHHHHHHHhCCcEec
Q 004835          266 FKCG-----------------DSDCFVLEHVKHDRPEVLKK----EIDLSQL------QWYGYCLFRALASLHKQGIVHR  318 (728)
Q Consensus       266 ~~~~-----------------~~~~LV~E~~~~~~l~~l~~----~l~~~~~------~~i~~QIl~aL~yLHs~gIIHR  318 (728)
                      +...                 ...|+||||+++ +|..+..    .+.+..+      ..++.||+.||+|||++||+||
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHr  218 (371)
T 3q60_A          140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAASV-DLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHG  218 (371)
T ss_dssp             EEETTSCSSSBCSCC---CCEEEEEEEECCCSE-EHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEET
T ss_pred             eecCCCCCeeeccCCcccceeeeEEEEecCCCC-CHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccC
Confidence            3322                 347999999994 5554433    2555555      6777999999999999999999


Q ss_pred             cCCCCceEeecCCCceEEEeeecccc
Q 004835          319 DVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       319 DIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+||||+ .++.+||+|||+|+.
T Consensus       219 Dikp~NIll~-~~~~~kL~DFG~a~~  243 (371)
T 3q60_A          219 HFTPDNLFIM-PDGRLMLGDVSALWK  243 (371)
T ss_dssp             TCSGGGEEEC-TTSCEEECCGGGEEE
T ss_pred             cCCHHHEEEC-CCCCEEEEecceeee
Confidence            9999999999 667899999999974

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=7.7e-42  Score=357.51  Aligned_cols=144  Identities=24%  Similarity=0.311  Sum_probs=125.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ++.|.....||+|+||.||+|.+..+++.||||++....  ....+.+|+.++..+.|+| |+++++++...+..++|||
T Consensus        21 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~e   99 (295)
T 2clq_A           21 YDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKN-IVQYLGSFSENGFIKIFME   99 (295)
T ss_dssp             BCTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTT-BCCEEEEEEETTEEEEEEE
T ss_pred             ccCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCC-EeeEeeEEEeCCcEEEEEE
Confidence            445555669999999999999999999999999987543  3466889999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhhc------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKKE------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~~------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.++++..+...      +++..+..++.||+.||.|||++||+||||||+|||++..++.++|+|||++..
T Consensus       100 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~  172 (295)
T 2clq_A          100 QVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKR  172 (295)
T ss_dssp             CCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEE
T ss_pred             eCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccc
Confidence            9998888776532      457888999999999999999999999999999999995477899999999874

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=2.6e-41  Score=356.22  Aligned_cols=252  Identities=26%  Similarity=0.358  Sum_probs=210.0

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +.|++.+.||+|+||.||+|++..+++.||||++...   .....+.+|+.++..+.|++ |+++++++......|+|||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e  100 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPY-VTKYYGSYLKDTKLWIIME  100 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTT-BCCEEEEEEETTEEEEEEE
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCC-EeEEEEEEecCCeEEEEEE
Confidence            5799999999999999999999999999999998643   23467889999999999998 9999999999999999999


Q ss_pred             ccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccC
Q 004835          278 HVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATL  355 (728)
Q Consensus       278 ~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~  355 (728)
                      |++++++..+..  .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++.......      
T Consensus       101 ~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~-~~~~~kl~Dfg~~~~~~~~~------  173 (303)
T 3a7i_A          101 YLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLS-EHGEVKLADFGVAGQLTDTQ------  173 (303)
T ss_dssp             CCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTSCEEECCCTTCEECBTTB------
T ss_pred             eCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEEC-CCCCEEEeecccceecCccc------
Confidence            999988877764  388999999999999999999999999999999999998 66789999999987421100      


Q ss_pred             CCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCc
Q 004835          356 PGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTP  435 (728)
Q Consensus       356 ~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (728)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (303)
T 3a7i_A          174 --------------------------------------------------------------------------------  173 (303)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCC
Q 004835          436 AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSD  515 (728)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  515 (728)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (303)
T 3a7i_A          174 --------------------------------------------------------------------------------  173 (303)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 004835          516 LSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD  595 (728)
Q Consensus       516 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~  595 (728)
                                                    .......||+.|+|||++.+.. ++.++|||||||++|+|++|..||...
T Consensus       174 ------------------------------~~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~il~~l~~g~~p~~~~  222 (303)
T 3a7i_A          174 ------------------------------IKRNTFVGTPFWMAPEVIKQSA-YDSKADIWSLGITAIELARGEPPHSEL  222 (303)
T ss_dssp             ------------------------------CCBCCCCSCGGGCCHHHHTTCC-BCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ------------------------------cccCccCCCcCccCHHHHhcCC-CCchhhhHHHHHHHHHHccCCCCCCCc
Confidence                                          0011345899999999996544 689999999999999999999999876


Q ss_pred             ChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCC
Q 004835          596 PEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL  675 (728)
Q Consensus       596 ~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~  675 (728)
                      ....+...+..                                         ...+.+...++..+.+||.+||..||++
T Consensus       223 ~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~li~~~l~~dp~~  261 (303)
T 3a7i_A          223 HPMKVLFLIPK-----------------------------------------NNPPTLEGNYSKPLKEFVEACLNKEPSF  261 (303)
T ss_dssp             CHHHHHHHHHH-----------------------------------------SCCCCCCSSCCHHHHHHHHHHCCSSGGG
T ss_pred             CHHHHHHHhhc-----------------------------------------CCCCCCccccCHHHHHHHHHHcCCChhh
Confidence            65443322210                                         0112233467889999999999999999


Q ss_pred             CCCHHHHhcCCCCccch
Q 004835          676 RISAEDALKHEFFAPCH  692 (728)
Q Consensus       676 Rpta~e~L~Hp~f~~~~  692 (728)
                      |||+.++|+||||....
T Consensus       262 Rps~~~ll~~~~~~~~~  278 (303)
T 3a7i_A          262 RPTAKELLKHKFILRNA  278 (303)
T ss_dssp             SCCHHHHTTCHHHHHHC
T ss_pred             CcCHHHHhhChhhhcCC
Confidence            99999999999997544

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=4.7e-42  Score=368.45  Aligned_cols=141  Identities=19%  Similarity=0.268  Sum_probs=126.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----h--------------hHHHHHHHHHHhcCCCCceE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----K--------------HYVSNELRMLERFGGKNFII  260 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----~--------------~~~~~Ei~iL~~L~h~n~Iv  260 (728)
                      +++|.+.+.||+|+||.||+|++  +|+.||||++.....     .              ..+.+|+.++.+++|++ |+
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~  106 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEY-CL  106 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTT-BC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCC-cc
Confidence            57999999999999999999999  899999999863211     1              77889999999999999 99


Q ss_pred             EecceEEeCCeeEEEEeccCCCChHHH------h-----hcCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEee
Q 004835          261 KYEGCFKCGDSDCFVLEHVKHDRPEVL------K-----KEIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFS  328 (728)
Q Consensus       261 kl~~~~~~~~~~~LV~E~~~~~~l~~l------~-----~~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld  328 (728)
                      ++++++...+..|+||||+.++++..+      .     ..+++..++.++.||+.||.|||+ +||+||||||+|||++
T Consensus       107 ~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~  186 (348)
T 2pml_X          107 TCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMD  186 (348)
T ss_dssp             CCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEEC
T ss_pred             eEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEc
Confidence            999999999999999999999877665      2     348899999999999999999999 9999999999999998


Q ss_pred             cCCCceEEEeeecccc
Q 004835          329 CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       329 ~~~~~~kL~DFGlA~~  344 (728)
                       .++.++|+|||++..
T Consensus       187 -~~~~~kl~dfg~~~~  201 (348)
T 2pml_X          187 -KNGRVKLSDFGESEY  201 (348)
T ss_dssp             -TTSCEEECCCTTCEE
T ss_pred             -CCCcEEEeccccccc
Confidence             667899999999874

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=5.3e-42  Score=360.93  Aligned_cols=257  Identities=26%  Similarity=0.345  Sum_probs=205.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc------CchhHHHHHHHHHHhcCCCCceEEecceEE--eCCe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN------ASKHYVSNELRMLERFGGKNFIIKYEGCFK--CGDS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~--~~~~  271 (728)
                      +++|.+.+.||+|+||.||+|.+..+++.||+|++...      .....+.+|+.++..++|+| |+++++++.  ....
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~   82 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKN-VIQLVDVLYNEEKQK   82 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTT-BCCEEEEEECC---C
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCC-eeEEEEEEEcCCCCe
Confidence            46899999999999999999999999999999998743      23466889999999999999 999999884  4568


Q ss_pred             eEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccC
Q 004835          272 DCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFD  347 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~  347 (728)
                      .|+||||+.+++...+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++.....
T Consensus        83 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~-~~~~~kl~dfg~~~~~~~  161 (305)
T 2wtk_C           83 MYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLT-TGGTLKISALGVAEALHP  161 (305)
T ss_dssp             EEEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTCCEEECCCTTCEECCT
T ss_pred             EEEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEc-CCCcEEeeccccccccCc
Confidence            899999999985554432    388999999999999999999999999999999999999 667899999999875210


Q ss_pred             CCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccc
Q 004835          348 GSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAK  427 (728)
Q Consensus       348 ~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~  427 (728)
                      ...                                                                             
T Consensus       162 ~~~-----------------------------------------------------------------------------  164 (305)
T 2wtk_C          162 FAA-----------------------------------------------------------------------------  164 (305)
T ss_dssp             TCS-----------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             cccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCC
Q 004835          428 EATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAG  507 (728)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (728)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (305)
T 2wtk_C          165 --------------------------------------------------------------------------------  164 (305)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccC-CCCCchhHHHHHHHHHHHh
Q 004835          508 LMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQ-HQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       508 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~-~~~~~~DIWSlG~il~eLl  586 (728)
                                                           ........||+.|+|||++.+.. .++.++|||||||++|+|+
T Consensus       165 -------------------------------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~  207 (305)
T 2wtk_C          165 -------------------------------------DDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNIT  207 (305)
T ss_dssp             -------------------------------------SCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------ccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHH
Confidence                                                 00001335899999999986533 2377999999999999999


Q ss_pred             cCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          587 IGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       587 tG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      +|..||.+.....+...+.                                          .....++..+++.+.+||.
T Consensus       208 ~g~~p~~~~~~~~~~~~i~------------------------------------------~~~~~~~~~~~~~l~~li~  245 (305)
T 2wtk_C          208 TGLYPFEGDNIYKLFENIG------------------------------------------KGSYAIPGDCGPPLSDLLK  245 (305)
T ss_dssp             HSSCSCCCSSHHHHHHHHH------------------------------------------HCCCCCCSSSCHHHHHHHH
T ss_pred             hCCCCCCCchHHHHHHHHh------------------------------------------cCCCCCCCccCHHHHHHHH
Confidence            9999998876654433221                                          0112233467889999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      +||..||.+|||+.|+++||||+.....
T Consensus       246 ~~l~~dp~~Rps~~~ll~~~~~~~~~~~  273 (305)
T 2wtk_C          246 GMLEYEPAKRFSIRQIRQHSWFRKKHPP  273 (305)
T ss_dssp             HHTCSSTTTSCCHHHHHHSHHHHSCCCC
T ss_pred             HHccCChhhCCCHHHHhcCcccccCCCC
Confidence            9999999999999999999999976654

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=4.3e-43  Score=383.31  Aligned_cols=144  Identities=16%  Similarity=0.213  Sum_probs=116.0

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHH---HHHHhcCCCCceEEec------
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNEL---RMLERFGGKNFIIKYE------  263 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei---~iL~~L~h~n~Ivkl~------  263 (728)
                      ...++|.+.+.||+|+||+||+|++..+|+.||||++...     ...+.+.+|+   .++.++.|+| |++++      
T Consensus        70 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpn-iv~~~~~~~~~  148 (377)
T 3byv_A           70 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQK-QAKVHLRFIFP  148 (377)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHH-HHHHHHCBCCC
T ss_pred             CCCceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHH-HHHHHhhhhhh
Confidence            3457899999999999999999999889999999998632     2346688999   4555667888 88887      


Q ss_pred             -ceEEeCC-----------------eeEEEEeccCCCChHHHhh---cCCh-------HHHHHHHHHHHHHHHHHHhCCc
Q 004835          264 -GCFKCGD-----------------SDCFVLEHVKHDRPEVLKK---EIDL-------SQLQWYGYCLFRALASLHKQGI  315 (728)
Q Consensus       264 -~~~~~~~-----------------~~~LV~E~~~~~~l~~l~~---~l~~-------~~~~~i~~QIl~aL~yLHs~gI  315 (728)
                       +++...+                 ..|+||||+++ ++..+..   .+++       ..+..|+.||+.||+|||++||
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g-~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i  227 (377)
T 3byv_A          149 FDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQS-NLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGL  227 (377)
T ss_dssp             SEEEECTTSCSEEEC------CEEESEEEEEECCSE-EHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred             hhhhhccCCccccccccCCCceEEEEEEEEEeccCC-CHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCe
Confidence             5554443                 37999999965 5554432   2544       7788899999999999999999


Q ss_pred             EeccCCCCceEeecCCCceEEEeeecccc
Q 004835          316 VHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       316 IHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||||+||||+ .++.+||+|||+|+.
T Consensus       228 vHrDikp~NIll~-~~~~~kL~DFG~a~~  255 (377)
T 3byv_A          228 VHTYLRPVDIVLD-QRGGVFLTGFEHLVR  255 (377)
T ss_dssp             ECSCCCGGGEEEC-TTCCEEECCGGGCEE
T ss_pred             ecCCCCHHHEEEc-CCCCEEEEechhhee
Confidence            9999999999999 667899999999874

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=4.1e-42  Score=364.86  Aligned_cols=143  Identities=23%  Similarity=0.218  Sum_probs=125.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----hhHHHHHHHHHHhcCCCCceEEecceEEeCCe---
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS---  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~---  271 (728)
                      .++|++.+.||+|+||.||+|++..+++.||||++.....     ...+.+|+.++.+++|+| |+++++++.....   
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~~   89 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPA-IVAVYDTGEAETPAGP   89 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTT-BCCEEEEEEEEETTEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCC-cceEEEeeeccCCCCc
Confidence            3689999999999999999999999999999999875422     245789999999999999 9999999876543   


Q ss_pred             -eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 -DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 -~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                       .|+||||+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+||||+ .++.+||+|||++..
T Consensus        90 ~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~-~~~~~kl~Dfg~a~~  165 (311)
T 3ork_A           90 LPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMIS-ATNAVKVMDFGIARA  165 (311)
T ss_dssp             EEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTSCEEECCCSCC--
T ss_pred             ccEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEc-CCCCEEEeeccCccc
Confidence             499999999988877653   389999999999999999999999999999999999999 667899999999974

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=1.1e-41  Score=363.73  Aligned_cols=258  Identities=24%  Similarity=0.337  Sum_probs=210.3

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--------chhHHHHHHHHHHhcCC--CCceEEecceEE
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--------SKHYVSNELRMLERFGG--KNFIIKYEGCFK  267 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--------~~~~~~~Ei~iL~~L~h--~n~Ivkl~~~~~  267 (728)
                      ...++|++.+.||+|+||.||+|++..+++.||||++....        ....+.+|+.++.++.|  ++ |+++++++.
T Consensus        40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~-i~~~~~~~~  118 (320)
T 3a99_A           40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG-VIRLLDWFE  118 (320)
T ss_dssp             CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCS-BCCEEEEEE
T ss_pred             CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCC-ceEEEEEEe
Confidence            34568999999999999999999999999999999986432        22456789999999975  77 999999999


Q ss_pred             eCCeeEEEEeccCC-CChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          268 CGDSDCFVLEHVKH-DRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       268 ~~~~~~LV~E~~~~-~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      ..+..++|||++.+ +.+..+..   .+++..++.++.||+.||.|||++||+||||||+||||+.+++.+||+|||++.
T Consensus       119 ~~~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~  198 (320)
T 3a99_A          119 RPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGA  198 (320)
T ss_dssp             CSSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             cCCcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCcccc
Confidence            99999999999985 56655443   389999999999999999999999999999999999998666789999999987


Q ss_pred             cccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCc
Q 004835          344 VGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGI  423 (728)
Q Consensus       344 ~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~  423 (728)
                      .....                                                                           
T Consensus       199 ~~~~~---------------------------------------------------------------------------  203 (320)
T 3a99_A          199 LLKDT---------------------------------------------------------------------------  203 (320)
T ss_dssp             ECCSS---------------------------------------------------------------------------
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            42100                                                                           


Q ss_pred             cccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccc
Q 004835          424 TSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAV  503 (728)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (728)
                                                                                                      
T Consensus       204 --------------------------------------------------------------------------------  203 (320)
T 3a99_A          204 --------------------------------------------------------------------------------  203 (320)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHH
Q 004835          504 AGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLL  583 (728)
Q Consensus       504 ~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~  583 (728)
                                                                 ......||+.|+|||++.+...++.++|||||||++|
T Consensus       204 -------------------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~  240 (320)
T 3a99_A          204 -------------------------------------------VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLY  240 (320)
T ss_dssp             -------------------------------------------CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHH
Confidence                                                       0012358999999999977665678999999999999


Q ss_pred             HHhcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHH
Q 004835          584 YLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD  663 (728)
Q Consensus       584 eLltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d  663 (728)
                      +|++|+.||.....     +..                                           ....+...+++.+.+
T Consensus       241 el~~g~~pf~~~~~-----~~~-------------------------------------------~~~~~~~~~~~~~~~  272 (320)
T 3a99_A          241 DMVCGDIPFEHDEE-----IIR-------------------------------------------GQVFFRQRVSSECQH  272 (320)
T ss_dssp             HHHHSSCSCCSHHH-----HHH-------------------------------------------CCCCCSSCCCHHHHH
T ss_pred             HHHHCCCCCCChhh-----hhc-------------------------------------------ccccccccCCHHHHH
Confidence            99999999965311     110                                           011223457889999


Q ss_pred             HHHHhcccCCCCCCCHHHHhcCCCCccchhcchHhHhhh
Q 004835          664 LVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLR  702 (728)
Q Consensus       664 Li~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~~~~  702 (728)
                      ||.+||..||++|||++|+++||||+++........+..
T Consensus       273 li~~~l~~dp~~Rps~~~ll~hp~~~~~~~~~~~~~~~~  311 (320)
T 3a99_A          273 LIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHL  311 (320)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHTSGGGSSCCCHHHHHHHHT
T ss_pred             HHHHHccCChhhCcCHHHHhcCHhhcCccCccccccccc
Confidence            999999999999999999999999999876555544443

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=1.6e-41  Score=373.82  Aligned_cols=141  Identities=26%  Similarity=0.322  Sum_probs=119.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCC-CCceEEecceEEeCCeeEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGG-KNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h-~n~Ivkl~~~~~~~~~~~L  274 (728)
                      -..|.+.+.||+|+||.||+|.+.. ++.||||++....    ....+.+|+.++.++.| +++|+++++++...+..|+
T Consensus        55 ~~~y~~~~~LG~G~fg~Vy~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~l  133 (390)
T 2zmd_A           55 GRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM  133 (390)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             CCceEEEEEEccCCCeEEEEEEcCC-CCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEE
Confidence            3469999999999999999999864 9999999986542    23567899999999975 3349999999999999999


Q ss_pred             EEeccCCCChHHHh-h--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLK-K--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~-~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+ .++.+..+. .  .+++..+..++.||+.||.|||++||+||||||+||||+ + +.+||+|||++..
T Consensus       134 v~E~-~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~-~~~kl~DFG~a~~  203 (390)
T 2zmd_A          134 VMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-D-GMLKLIDFGIANQ  203 (390)
T ss_dssp             EEEC-CSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-S-SCEEECCCSSSCC
T ss_pred             EEec-CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-C-CeEEEEecCcccc
Confidence            9995 444554443 2  378889999999999999999999999999999999996 3 5799999999974

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=6.3e-41  Score=356.97  Aligned_cols=148  Identities=24%  Similarity=0.321  Sum_probs=126.5

Q ss_pred             ccccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEe
Q 004835          193 NAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKC  268 (728)
Q Consensus       193 ~~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~  268 (728)
                      ...+....++|++.+.||+|+||+||+|++  +|+.||||++.....    ...+.+|+.++.+++|+| |+++++++..
T Consensus        29 ~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~  105 (309)
T 3p86_A           29 GDDMDIPWCDLNIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPN-IVLFMGAVTQ  105 (309)
T ss_dssp             ---CBCCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTT-BCCEEEEECS
T ss_pred             cccccCChhHceeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEEE
Confidence            344445678999999999999999999988  689999999875432    345789999999999999 9999999999


Q ss_pred             CCeeEEEEeccCCCChHHHhhc------CChHHHHHHHHHHHHHHHHHHhCC--cEeccCCCCceEeecCCCceEEEeee
Q 004835          269 GDSDCFVLEHVKHDRPEVLKKE------IDLSQLQWYGYCLFRALASLHKQG--IVHRDVKPGNFLFSCKAVKGYLIDFN  340 (728)
Q Consensus       269 ~~~~~LV~E~~~~~~l~~l~~~------l~~~~~~~i~~QIl~aL~yLHs~g--IIHRDIKPeNILld~~~~~~kL~DFG  340 (728)
                      ....|+||||+.++++..+...      +++..+..++.||+.||+|||++|  |+||||||+|||++ .++.+||+|||
T Consensus       106 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~-~~~~~kL~Dfg  184 (309)
T 3p86_A          106 PPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVD-KKYTVKVCDFG  184 (309)
T ss_dssp             TTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEEC-TTCCEEECCCC
T ss_pred             CCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEe-CCCcEEECCCC
Confidence            9999999999999888776532      889999999999999999999999  99999999999999 66789999999


Q ss_pred             cccc
Q 004835          341 LAMV  344 (728)
Q Consensus       341 lA~~  344 (728)
                      +++.
T Consensus       185 ~a~~  188 (309)
T 3p86_A          185 LSRL  188 (309)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            9864

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=2.1e-41  Score=354.57  Aligned_cols=143  Identities=23%  Similarity=0.290  Sum_probs=127.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ++|++.+.||+|+||.||+|++..+++.||||++...    .....+.+|+.++++++|++ |+++++++......|+||
T Consensus        22 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~  100 (287)
T 2wei_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPN-IMKLFEILEDSSSFYIVG  100 (287)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSEEEEEE
T ss_pred             hcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCC-ccEEEEEEeCCCeEEEEE
Confidence            4799999999999999999999989999999998642    34567889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~DFGlA~~  344 (728)
                      ||+.++.+....   ..+++..+..++.||+.||.|||++||+||||||+|||++..  +..+||+|||++..
T Consensus       101 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~  173 (287)
T 2wei_A          101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTC  173 (287)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGT
T ss_pred             EccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCccee
Confidence            999988775543   348999999999999999999999999999999999999743  34699999999864

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=2.3e-41  Score=351.49  Aligned_cols=255  Identities=24%  Similarity=0.308  Sum_probs=207.0

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEE--eCCee
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFK--CGDSD  272 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~--~~~~~  272 (728)
                      ..++|++.+.||+|+||.||+|++..+|+.||+|++....    ....+.+|+.++++++|+| |+++++++.  .+...
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~   82 (279)
T 2w5a_A            4 RAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN-IVRYYDRIIDRTNTTL   82 (279)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEEEGGGTEE
T ss_pred             chhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCC-CCeEEEEEecCCCceE
Confidence            4578999999999999999999999999999999987432    2456789999999999999 999999875  36789


Q ss_pred             EEEEeccCCCChHHHhhc-------CChHHHHHHHHHHHHHHHHHHhCC-----cEeccCCCCceEeecCCCceEEEeee
Q 004835          273 CFVLEHVKHDRPEVLKKE-------IDLSQLQWYGYCLFRALASLHKQG-----IVHRDVKPGNFLFSCKAVKGYLIDFN  340 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~~-------l~~~~~~~i~~QIl~aL~yLHs~g-----IIHRDIKPeNILld~~~~~~kL~DFG  340 (728)
                      |+||||+.++++..+...       +++..+..++.||+.||.|||++|     |+||||||+|||++ .++.+||+|||
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~-~~~~~kl~dfg  161 (279)
T 2w5a_A           83 YIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLD-GKQNVKLGDFG  161 (279)
T ss_dssp             EEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEEC-SSSCEEECCCC
T ss_pred             EEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEc-CCCCEEEecCc
Confidence            999999999887766532       899999999999999999999999     99999999999999 66789999999


Q ss_pred             ccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCC
Q 004835          341 LAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADG  420 (728)
Q Consensus       341 lA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~  420 (728)
                      ++........                                                                      
T Consensus       162 ~~~~~~~~~~----------------------------------------------------------------------  171 (279)
T 2w5a_A          162 LARILNHDTS----------------------------------------------------------------------  171 (279)
T ss_dssp             HHHHC---CH----------------------------------------------------------------------
T ss_pred             hheeeccccc----------------------------------------------------------------------
Confidence            9875210000                                                                      


Q ss_pred             CCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCC
Q 004835          421 SGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNG  500 (728)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (728)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (279)
T 2w5a_A          172 --------------------------------------------------------------------------------  171 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHH
Q 004835          501 IAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGV  580 (728)
Q Consensus       501 ~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~  580 (728)
                                                                    ......||+.|+|||++.+.. ++.++|||||||
T Consensus       172 ----------------------------------------------~~~~~~~~~~y~aPE~~~~~~-~~~~~Di~slG~  204 (279)
T 2w5a_A          172 ----------------------------------------------FAKTFVGTPYYMSPEQMNRMS-YNEKSDIWSLGC  204 (279)
T ss_dssp             ----------------------------------------------HHHHHHSCCTTCCHHHHHCC--CCHHHHHHHHHH
T ss_pred             ----------------------------------------------cccccCCCccccChHHhccCC-CCchhhHHHHHH
Confidence                                                          000124799999999996654 689999999999


Q ss_pred             HHHHHhcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchh
Q 004835          581 TLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSS  660 (728)
Q Consensus       581 il~eLltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (728)
                      ++|+|++|..||.+.....+...+.. |                                        ..+.++..++..
T Consensus       205 il~~l~~g~~p~~~~~~~~~~~~i~~-~----------------------------------------~~~~~~~~~~~~  243 (279)
T 2w5a_A          205 LLYELCALMPPFTAFSQKELAGKIRE-G----------------------------------------KFRRIPYRYSDE  243 (279)
T ss_dssp             HHHHHHHSSCSSCCSSHHHHHHHHHH-T----------------------------------------CCCCCCTTSCHH
T ss_pred             HHHHHHHCCCCCcccCHHHHHHHHhh-c----------------------------------------ccccCCcccCHH
Confidence            99999999999988776544332211 0                                        011233457889


Q ss_pred             HHHHHHHhcccCCCCCCCHHHHhcCCCCccchh
Q 004835          661 LFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       661 l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      +.+||.+||..||++|||+.|+|+|+||.+-..
T Consensus       244 l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~~  276 (279)
T 2w5a_A          244 LNEIITRMLNLKDYHRPSVEEILENPLILEHHH  276 (279)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHTSTTCCGGGS
T ss_pred             HHHHHHHHcCCCcccCCCHHHHHhChhhhhhcc
Confidence            999999999999999999999999999987543

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.7e-41  Score=357.49  Aligned_cols=144  Identities=24%  Similarity=0.316  Sum_probs=119.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--------chhHHHHHHHHHHhc----CCCCceEEecceEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--------SKHYVSNELRMLERF----GGKNFIIKYEGCFK  267 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--------~~~~~~~Ei~iL~~L----~h~n~Ivkl~~~~~  267 (728)
                      .++|++.+.||+|+||.||+|++..+++.||||++....        ....+.+|+.++.++    .|+| |+++++++.
T Consensus        30 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~-i~~~~~~~~  108 (312)
T 2iwi_A           30 EAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPG-VIRLLDWFE  108 (312)
T ss_dssp             ---CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSS-BCCEEEEC-
T ss_pred             hhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCC-eeeEEEEEe
Confidence            468999999999999999999999999999999986542        223456799999999    8998 999999999


Q ss_pred             eCCeeEEEEec-cCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          268 CGDSDCFVLEH-VKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       268 ~~~~~~LV~E~-~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      ..+..++|||| +.++++..+..   .+++..++.++.||+.||.|||++||+||||||+|||++..++.+||+|||++.
T Consensus       109 ~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~  188 (312)
T 2iwi_A          109 TQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGA  188 (312)
T ss_dssp             ----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCCSSCE
T ss_pred             cCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEcchhh
Confidence            99999999999 67777766553   389999999999999999999999999999999999998667789999999987


Q ss_pred             c
Q 004835          344 V  344 (728)
Q Consensus       344 ~  344 (728)
                      .
T Consensus       189 ~  189 (312)
T 2iwi_A          189 L  189 (312)
T ss_dssp             E
T ss_pred             h
Confidence            5

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=4.7e-41  Score=351.42  Aligned_cols=142  Identities=23%  Similarity=0.285  Sum_probs=125.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEe-----------
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKC-----------  268 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~-----------  268 (728)
                      ++|++.+.||+|+||.||+|++..+|+.||||++... .....+.+|+.++.+++|+| |+++++++..           
T Consensus         6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~~~~~~~   84 (303)
T 1zy4_A            6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQY-VVRYYAAWLERRNFVKPMTAV   84 (303)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTT-BCCEEEEEEECCCCCC-----
T ss_pred             ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHhhcchhhhhccc
Confidence            4799999999999999999999999999999998643 23456789999999999999 9999888754           


Q ss_pred             --CCeeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecc
Q 004835          269 --GDSDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       269 --~~~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                        ....|+||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~-~~~~~kl~dfg~~  163 (303)
T 1zy4_A           85 KKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFID-ESRNVKIGDFGLA  163 (303)
T ss_dssp             -CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTSCEEECCCCCC
T ss_pred             ccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEc-CCCCEEEeeCcch
Confidence              457899999999988877664    367889999999999999999999999999999999998 6678999999998


Q ss_pred             cc
Q 004835          343 MV  344 (728)
Q Consensus       343 ~~  344 (728)
                      ..
T Consensus       164 ~~  165 (303)
T 1zy4_A          164 KN  165 (303)
T ss_dssp             SC
T ss_pred             hh
Confidence            75

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=3.3e-41  Score=355.74  Aligned_cols=142  Identities=22%  Similarity=0.296  Sum_probs=128.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||.||+|++..+++.||+|++....     ....+.+|+.++.+++|+| |+++++++..++..|+|
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~-iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQN-IVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTT-BCCEEEEEECSSEEEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCC-CceEEEeeeeCCeEEEE
Confidence            58999999999999999999999999999999875322     2356789999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus        90 ~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~-~~~~~kl~Dfg~~~~  160 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILID-SNKTLKIFDFGIAKA  160 (294)
T ss_dssp             EECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTSCEEECCCSSSTT
T ss_pred             EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEC-CCCCEEEEeCCCccc
Confidence            99999988877654   389999999999999999999999999999999999999 667899999999874

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.5e-40  Score=363.19  Aligned_cols=144  Identities=22%  Similarity=0.294  Sum_probs=127.2

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEc-------CCCeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecceEE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRK-------NDGTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGCFK  267 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~-------~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~  267 (728)
                      ..++|.+.+.||+|+||.||+|++.       .++..||||++.....   ...+.+|+.++..+ +|+| |+++++++.
T Consensus        79 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpn-Iv~~~~~~~  157 (370)
T 2psq_A           79 PRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN-IINLLGACT  157 (370)
T ss_dssp             CGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTT-BCCEEEEEC
T ss_pred             cHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCC-EeeEEEEEc
Confidence            4578999999999999999999974       3457899999876533   34678999999999 7888 999999999


Q ss_pred             eCCeeEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS  328 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld  328 (728)
                      ..+.+|+||||+.+++|..+..                   .+++..+..++.||+.||.|||++||+||||||+||||+
T Consensus       158 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~  237 (370)
T 2psq_A          158 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVT  237 (370)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEC
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEEC
Confidence            9999999999999988877653                   267889999999999999999999999999999999999


Q ss_pred             cCCCceEEEeeecccc
Q 004835          329 CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       329 ~~~~~~kL~DFGlA~~  344 (728)
                       .++.+||+|||+++.
T Consensus       238 -~~~~~kl~DFG~a~~  252 (370)
T 2psq_A          238 -ENNVMKIADFGLARD  252 (370)
T ss_dssp             -TTCCEEECCCSSCEE
T ss_pred             -CCCCEEEccccCCcc
Confidence             667899999999974

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=1.1e-40  Score=356.64  Aligned_cols=141  Identities=26%  Similarity=0.356  Sum_probs=126.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEecc
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      ++|++.+.||+|+||.||+|++..+|+.||||++........+.+|+.++..+ .|++ |+++++++..+...|+||||+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~-i~~~~~~~~~~~~~~lv~e~~   87 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDG-IPQVYYFGPCGKYNAMVLELL   87 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTT-SCCEEEEEEETTEEEEEEECC
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCC-CCEEEEEEecCCccEEEEEeC
Confidence            58999999999999999999999999999999987666666788999999999 7777 999999999999999999999


Q ss_pred             CCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCc-----eEEEeeecccc
Q 004835          280 KHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK-----GYLIDFNLAMV  344 (728)
Q Consensus       280 ~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~-----~kL~DFGlA~~  344 (728)
                       ++++..+..    .+++..++.++.||+.||.|||++||+||||||+|||++ .++.     +||+|||+++.
T Consensus        88 -~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~-~~~~~~~~~~kl~DFg~a~~  159 (330)
T 2izr_A           88 -GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIG-RPGNKTQQVIHIIDFALAKE  159 (330)
T ss_dssp             -CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-CGGGTCTTSEEECCCTTCEE
T ss_pred             -CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeec-cCCCCCCceEEEEEccccee
Confidence             666665543    489999999999999999999999999999999999998 4444     99999999975

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.5e-40  Score=344.34  Aligned_cols=146  Identities=19%  Similarity=0.230  Sum_probs=130.7

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +....++|++.+.||+|+||.||+|++. +++.||+|++.... ..+.+.+|+.++++++|+| |+++++++......|+
T Consensus         5 ~~i~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~l   82 (269)
T 4hcu_A            5 WVIDPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK-LVQLYGVCLEQAPICL   82 (269)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTT-BCCEEEEECSSSSEEE
T ss_pred             EEeChhhceeeheecCCCccEEEEEEec-CCCeEEEEEecccccCHHHHHHHHHHHHhCCCCC-EeeEEEEEecCCceEE
Confidence            3445578999999999999999999996 57889999987643 4567889999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhhc----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~~----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.++++..+...    +++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        83 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~-~~~~~kl~Dfg~~~~  155 (269)
T 4hcu_A           83 VFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVG-ENQVIKVSDFGMTRF  155 (269)
T ss_dssp             EEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-GGGCEEECCTTGGGG
T ss_pred             EEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEc-CCCCEEecccccccc
Confidence            9999999988776632    88999999999999999999999999999999999998 567899999999975

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=1.2e-40  Score=354.24  Aligned_cols=147  Identities=20%  Similarity=0.297  Sum_probs=117.2

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCe---EEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEe
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGT---VVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKC  268 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~---~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~  268 (728)
                      .....++|++.+.||+|+||.||+|++..++.   .||||++...    .....+.+|+.++++++|+| |+++++++..
T Consensus        18 ~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~   96 (323)
T 3qup_A           18 VLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPH-VAKLVGVSLR   96 (323)
T ss_dssp             TBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTT-BCCCCEEEEC
T ss_pred             cccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCc-eehhhceeec
Confidence            34455789999999999999999999876665   8999998753    23456889999999999999 9999999987


Q ss_pred             CCee------EEEEeccCCCChHHHhh---------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCc
Q 004835          269 GDSD------CFVLEHVKHDRPEVLKK---------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK  333 (728)
Q Consensus       269 ~~~~------~LV~E~~~~~~l~~l~~---------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~  333 (728)
                      ....      ++||||+.++++..+..         .+++..+..++.||+.||.|||++||+||||||+||||+ .++.
T Consensus        97 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~-~~~~  175 (323)
T 3qup_A           97 SRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLA-EDMT  175 (323)
T ss_dssp             C-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC-TTSC
T ss_pred             cccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEc-CCCC
Confidence            6655      99999999998876652         388999999999999999999999999999999999999 6678


Q ss_pred             eEEEeeecccc
Q 004835          334 GYLIDFNLAMV  344 (728)
Q Consensus       334 ~kL~DFGlA~~  344 (728)
                      +||+|||++..
T Consensus       176 ~kl~Dfg~a~~  186 (323)
T 3qup_A          176 VCVADFGLSRK  186 (323)
T ss_dssp             EEECCCCC---
T ss_pred             EEEeecccccc
Confidence            99999999974

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=9.8e-41  Score=357.72  Aligned_cols=144  Identities=26%  Similarity=0.316  Sum_probs=128.9

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCC---eEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDG---TVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g---~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..++|.+.+.||+|+||.||+|++..++   ..||||++....   ....+.+|+.++.+++|+| |+++++++..++..
T Consensus        47 ~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~  125 (325)
T 3kul_A           47 EASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPN-IIRLEGVVTRGRLA  125 (325)
T ss_dssp             CGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTT-BCCEEEEECGGGCC
T ss_pred             ChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEeCCcc
Confidence            4578999999999999999999998555   459999987543   2356889999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||+.++++..+.+    .+++..+..++.||+.||.|||++||+||||||+||||+ .++.+||+|||++..
T Consensus       126 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~-~~~~~kl~Dfg~a~~  200 (325)
T 3kul_A          126 MIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVD-SNLVCKVSDFGLSRV  200 (325)
T ss_dssp             EEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTCCEEECCCSSCEE
T ss_pred             EEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEC-CCCCEEECCCCcccc
Confidence            99999999998877763    489999999999999999999999999999999999998 667899999999975

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=4e-41  Score=367.23  Aligned_cols=254  Identities=19%  Similarity=0.278  Sum_probs=205.2

Q ss_pred             CCCCeeEEEEecccCceEEEEEEE-----cCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARR-----KNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~-----~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      ..++|.+.+.||+|+||+||+|++     ..+++.||||++....   ....+.+|+.++.+++|+| |+++++++....
T Consensus        69 ~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~~~~~~~~~~  147 (367)
T 3l9p_A           69 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQN-IVRCIGVSLQSL  147 (367)
T ss_dssp             CGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEECSSS
T ss_pred             CHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCC-CCeEEEEEecCC
Confidence            347899999999999999999994     4567899999987532   2345788999999999999 999999999999


Q ss_pred             eeEEEEeccCCCChHHHhh----------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEe
Q 004835          271 SDCFVLEHVKHDRPEVLKK----------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLID  338 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~----------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~D  338 (728)
                      ..|+||||+.+++|..+..          .+++..++.++.||+.||.|||++||+||||||+||||+.+  +..+||+|
T Consensus       148 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~D  227 (367)
T 3l9p_A          148 PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGD  227 (367)
T ss_dssp             SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred             CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECC
Confidence            9999999999988877653          27889999999999999999999999999999999999833  33599999


Q ss_pred             eeccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCC
Q 004835          339 FNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGA  418 (728)
Q Consensus       339 FGlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~  418 (728)
                      ||+++.......                                                                    
T Consensus       228 FG~a~~~~~~~~--------------------------------------------------------------------  239 (367)
T 3l9p_A          228 FGMARDIYRAGY--------------------------------------------------------------------  239 (367)
T ss_dssp             CHHHHHHHHHSS--------------------------------------------------------------------
T ss_pred             Cccccccccccc--------------------------------------------------------------------
Confidence            999974210000                                                                    


Q ss_pred             CCCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCC
Q 004835          419 DGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHS  498 (728)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  498 (728)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (367)
T 3l9p_A          240 --------------------------------------------------------------------------------  239 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHH
Q 004835          499 NGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSA  578 (728)
Q Consensus       499 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSl  578 (728)
                                                                    ........||+.|+|||++.+.. ++.++|||||
T Consensus       240 ----------------------------------------------~~~~~~~~~t~~y~aPE~~~~~~-~~~~~Dvwsl  272 (367)
T 3l9p_A          240 ----------------------------------------------YRKGGCAMLPVKWMPPEAFMEGI-FTSKTDTWSF  272 (367)
T ss_dssp             ----------------------------------------------CTTCCGGGSCGGGCCHHHHHHCC-CCHHHHHHHH
T ss_pred             ----------------------------------------------cccCCCcCCcccEECHHHhcCCC-CCcHHHHHHH
Confidence                                                          00011335799999999996655 6999999999


Q ss_pred             HHHHHHHhc-CCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccC
Q 004835          579 GVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVI  657 (728)
Q Consensus       579 G~il~eLlt-G~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  657 (728)
                      ||++|||++ |..||.+.....+...+...                                         .+...+..+
T Consensus       273 G~il~ellt~g~~pf~~~~~~~~~~~i~~~-----------------------------------------~~~~~~~~~  311 (367)
T 3l9p_A          273 GVLLWEIFSLGYMPYPSKSNQEVLEFVTSG-----------------------------------------GRMDPPKNC  311 (367)
T ss_dssp             HHHHHHHHTTSCCSSTTCCHHHHHHHHHTT-----------------------------------------CCCCCCTTC
T ss_pred             HHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-----------------------------------------CCCCCCccC
Confidence            999999998 99999988776655444211                                         112233467


Q ss_pred             chhHHHHHHHhcccCCCCCCCHHHHhcCCCCc
Q 004835          658 PSSLFDLVDKCLTVNPRLRISAEDALKHEFFA  689 (728)
Q Consensus       658 ~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~  689 (728)
                      +..+.+||.+||..||++|||+.++++|.|+-
T Consensus       312 ~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~  343 (367)
T 3l9p_A          312 PGPVYRIMTQCWQHQPEDRPNFAIILERIEYC  343 (367)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence            88999999999999999999999999988764

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=9.8e-41  Score=359.72  Aligned_cols=148  Identities=21%  Similarity=0.290  Sum_probs=126.6

Q ss_pred             ccCCCCCCeeEEEEecccCceEEEEEE-----EcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecce
Q 004835          195 KVLPNFESFIVEEEEGSGGYGTVYRAR-----RKNDGTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGC  265 (728)
Q Consensus       195 ~~~~~~~~y~i~~~LG~G~fG~Vy~a~-----~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~  265 (728)
                      .+....++|++.+.||+|+||.||+|+     ...+++.||||++.....   ...+.+|+.++.++ +|+| |++++++
T Consensus        16 ~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpn-iv~~~~~   94 (359)
T 3vhe_A           16 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN-VVNLLGA   94 (359)
T ss_dssp             HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT-BCCEEEE
T ss_pred             cccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcc-eeeeeee
Confidence            334456799999999999999999999     445679999999976433   34588999999999 5667 9999999


Q ss_pred             EEeCC-eeEEEEeccCCCChHHHhhc------------------------------------------------------
Q 004835          266 FKCGD-SDCFVLEHVKHDRPEVLKKE------------------------------------------------------  290 (728)
Q Consensus       266 ~~~~~-~~~LV~E~~~~~~l~~l~~~------------------------------------------------------  290 (728)
                      +...+ ..++||||+.++++..+...                                                      
T Consensus        95 ~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (359)
T 3vhe_A           95 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLS  174 (359)
T ss_dssp             ECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC---------------------------------------------
T ss_pred             eecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccc
Confidence            88754 48999999999888766532                                                      


Q ss_pred             ---------------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          291 ---------------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       291 ---------------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                                     +++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||++..
T Consensus       175 ~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~-~~~~~kl~Dfg~a~~  242 (359)
T 3vhe_A          175 DVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLS-EKNVVKICDFGLARD  242 (359)
T ss_dssp             ---------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC-GGGCEEECCCGGGSC
T ss_pred             hhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEc-CCCcEEEEeccceee
Confidence                           78889999999999999999999999999999999998 667899999999974

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=5.7e-40  Score=343.82  Aligned_cols=143  Identities=20%  Similarity=0.307  Sum_probs=126.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      ++|++.+.||+|+||.||+|++..+|+.||||++........+.+|+.++..+.++++++++++++..+...|+||||+ 
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-   88 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-   88 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-
Confidence            5799999999999999999999999999999998776666778899999999954444999999999999999999999 


Q ss_pred             CCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC----CceEEEeeecccc
Q 004835          281 HDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA----VKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~----~~~kL~DFGlA~~  344 (728)
                      ++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++.++    ..+||+|||++..
T Consensus        89 ~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~  160 (298)
T 1csn_A           89 GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF  160 (298)
T ss_dssp             CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEE
T ss_pred             CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccc
Confidence            666666543    389999999999999999999999999999999999998332    2399999999975

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=2.9e-40  Score=349.23  Aligned_cols=148  Identities=25%  Similarity=0.331  Sum_probs=117.9

Q ss_pred             cccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCch----hHHHHHHHHHHhcCCCCceEEecceEEeC
Q 004835          194 AKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK----HYVSNELRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       194 ~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~----~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      ......+++|++.+.||+|+||.||+|++..+|+.||||++......    ..+..+..++..+.|+| |+++++++...
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-i~~~~~~~~~~   96 (318)
T 2dyl_A           18 QRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPY-IVQCFGTFITN   96 (318)
T ss_dssp             SEEECCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTT-BCCEEEEEECS
T ss_pred             hhhhhhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCc-eeeEEEEEecC
Confidence            34455678999999999999999999999999999999998754332    22334455678888998 99999999999


Q ss_pred             CeeEEEEeccCCCChHHHh----hcCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          270 DSDCFVLEHVKHDRPEVLK----KEIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~----~~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +..|+||||++ +++..+.    ..+++..+..++.||+.||.|||++ ||+||||||+|||++ .++.+||+|||++..
T Consensus        97 ~~~~lv~e~~~-~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~-~~~~~kl~dfg~~~~  174 (318)
T 2dyl_A           97 TDVFIAMELMG-TCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLD-ERGQIKLCDFGISGR  174 (318)
T ss_dssp             SEEEEEECCCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEEC-TTSCEEECCCTTC--
T ss_pred             CcEEEEEeccC-CcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEEC-CCCCEEEEECCCchh
Confidence            99999999994 4444443    2489999999999999999999995 999999999999999 667899999999864

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.7e-40  Score=348.86  Aligned_cols=144  Identities=22%  Similarity=0.302  Sum_probs=131.2

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ..++|.+.+.||+|+||+||+|.+..+++.||+|++...  .....+.+|+.++.+++|+| |+++++++..+...|+||
T Consensus         8 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~lv~   86 (310)
T 3s95_A            8 RPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPN-VLKFIGVLYKDKRLNFIT   86 (310)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTT-BCCEEEEEEETTEEEEEE
T ss_pred             ChhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcC-cccEEEEEecCCeeEEEE
Confidence            356899999999999999999999999999999987643  23456889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.++++..+..    .+++..+..++.||+.||+|||++||+||||||+|||++ .++.+||+|||++..
T Consensus        87 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~-~~~~~kl~Dfg~~~~  157 (310)
T 3s95_A           87 EYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVR-ENKNVVVADFGLARL  157 (310)
T ss_dssp             ECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEC-TTSCEEECCCTTCEE
T ss_pred             EecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEEC-CCCCEEEeeccccee
Confidence            9999998887754    388999999999999999999999999999999999999 677899999999976

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=7.7e-40  Score=338.52  Aligned_cols=143  Identities=21%  Similarity=0.247  Sum_probs=128.8

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ..++|++.+.||+|+||.||+|.+. ++..||+|++.... ....+.+|+.++.+++|+| |+++++++......|+|||
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~e   83 (268)
T 3sxs_A            6 KREEITLLKELGSGQFGVVKLGKWK-GQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPK-LVKFYGVCSKEYPIYIVTE   83 (268)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTT-BCCEEEEECSSSSEEEEEE
T ss_pred             chhheeeeeeeccCCCceEEEEEec-CceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCC-EeeEEEEEccCCceEEEEE
Confidence            3468999999999999999999886 67789999987543 4567889999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |++++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        84 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~-~~~~~~l~Dfg~~~~  153 (268)
T 3sxs_A           84 YISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVD-RDLCVKVSDFGMTRY  153 (268)
T ss_dssp             CCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEEC-TTCCEEECCTTCEEE
T ss_pred             ccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEEC-CCCCEEEccCcccee
Confidence            999988776653    389999999999999999999999999999999999999 667899999999975

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=5.4e-40  Score=339.79  Aligned_cols=144  Identities=28%  Similarity=0.396  Sum_probs=122.3

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc------CchhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN------ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ...++|++.+.||+|+||.||+|.+  +|+.||||++...      ...+.+.+|+.++..++|+| |+++++++..++.
T Consensus         4 ~~~~~~~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~   80 (271)
T 3dtc_A            4 IDFAELTLEEIIGIGGFGKVYRAFW--IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPN-IIALRGVCLKEPN   80 (271)
T ss_dssp             CCTTSEEEEEEEEEETTEEEEEEEE--TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTT-BCCEEEEECCC--
T ss_pred             cchhheeeeeeeccCCCeEEEEEEE--cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCC-EeeEEEEEecCCc
Confidence            3567999999999999999999998  4899999998643      22356889999999999999 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCC---cEeccCCCCceEeecC-------CCceEEEee
Q 004835          272 DCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQG---IVHRDVKPGNFLFSCK-------AVKGYLIDF  339 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~g---IIHRDIKPeNILld~~-------~~~~kL~DF  339 (728)
                      .|+||||+.++++..+..  .+++..+..++.||+.||.|||++|   |+||||||+|||++..       ++.++|+||
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Df  160 (271)
T 3dtc_A           81 LCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDF  160 (271)
T ss_dssp             CEEEEECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCC
T ss_pred             eEEEEEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccC
Confidence            999999999999887764  4899999999999999999999999   9999999999999842       567999999


Q ss_pred             ecccc
Q 004835          340 NLAMV  344 (728)
Q Consensus       340 GlA~~  344 (728)
                      |++..
T Consensus       161 g~~~~  165 (271)
T 3dtc_A          161 GLARE  165 (271)
T ss_dssp             CC---
T ss_pred             Ccccc
Confidence            99864

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=3.9e-40  Score=347.64  Aligned_cols=146  Identities=22%  Similarity=0.294  Sum_probs=129.0

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEe
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKC  268 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~  268 (728)
                      ....++|.+.+.||+|+||.||+|.+.     .+++.||||++.....   ...+.+|+.+++.++|+| |+++++++..
T Consensus        19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~   97 (314)
T 2ivs_A           19 EFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPH-VIKLYGACSQ   97 (314)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTT-BCCEEEEECS
T ss_pred             ccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCc-eeeEEEEEec
Confidence            344578999999999999999999983     4568999999875433   356789999999999999 9999999999


Q ss_pred             CCeeEEEEeccCCCChHHHhhc---------------------------CChHHHHHHHHHHHHHHHHHHhCCcEeccCC
Q 004835          269 GDSDCFVLEHVKHDRPEVLKKE---------------------------IDLSQLQWYGYCLFRALASLHKQGIVHRDVK  321 (728)
Q Consensus       269 ~~~~~LV~E~~~~~~l~~l~~~---------------------------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIK  321 (728)
                      .+..|+||||+.++++..+...                           +++..+..++.||+.||.|||++||+|||||
T Consensus        98 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dik  177 (314)
T 2ivs_A           98 DGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLA  177 (314)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             CCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccc
Confidence            9999999999999888776532                           7888999999999999999999999999999


Q ss_pred             CCceEeecCCCceEEEeeecccc
Q 004835          322 PGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       322 PeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+|||++ .++.+||+|||++..
T Consensus       178 p~NIli~-~~~~~kl~Dfg~~~~  199 (314)
T 2ivs_A          178 ARNILVA-EGRKMKISDFGLSRD  199 (314)
T ss_dssp             GGGEEEE-TTTEEEECCCTTCEE
T ss_pred             hheEEEc-CCCCEEEcccccccc
Confidence            9999999 677899999999875

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=3e-40  Score=345.18  Aligned_cols=144  Identities=26%  Similarity=0.371  Sum_probs=124.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      .++|++.+.||+|+||.||+|++..+++.||||++........+.+|+.++..+.|++++..+..++..+...++||||+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   87 (296)
T 4hgt_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL   87 (296)
T ss_dssp             ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc
Confidence            36899999999999999999999999999999997766666678899999999999997888888888899999999999


Q ss_pred             CCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee--cCCCceEEEeeecccc
Q 004835          280 KHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS--CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       280 ~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld--~~~~~~kL~DFGlA~~  344 (728)
                       ++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++  .+++.+||+|||++..
T Consensus        88 -~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~  157 (296)
T 4hgt_A           88 -GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK  157 (296)
T ss_dssp             -CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred             -CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCcccee
Confidence             666655543    489999999999999999999999999999999999993  2667899999999975

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=5.6e-40  Score=343.55  Aligned_cols=144  Identities=26%  Similarity=0.371  Sum_probs=128.4

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      .++|++.+.||+|+||.||+|++..+|+.||||++........+.+|+.++..+.|++++..+..++..+...|+||||+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   87 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL   87 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec
Confidence            36899999999999999999999999999999998877666778999999999999997777777778888999999999


Q ss_pred             CCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee--cCCCceEEEeeecccc
Q 004835          280 KHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS--CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       280 ~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld--~~~~~~kL~DFGlA~~  344 (728)
                       ++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++  .+++.+||+|||++..
T Consensus        88 -~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~  157 (296)
T 3uzp_A           88 -GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK  157 (296)
T ss_dssp             -CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred             -CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccc
Confidence             666655543    489999999999999999999999999999999999994  3567899999999975

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=6.3e-40  Score=341.82  Aligned_cols=146  Identities=17%  Similarity=0.172  Sum_probs=128.2

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +....++|++.+.||+|+||.||+|.+. ++..||||++.... ....+.+|+.++.+++|++ |+++++++......|+
T Consensus        19 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~l   96 (283)
T 3gen_A           19 WEIDPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEK-LVQLYGVCTKQRPIFI   96 (283)
T ss_dssp             TBCCGGGEEEEEECC---CEEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTT-BCCEEEEECSSSSEEE
T ss_pred             ccCCHHHHHhHhhcCCCCCceEEEEEEc-CCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCC-EeeEEEEEecCCCeEE
Confidence            3455679999999999999999999886 67889999987643 4567889999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        97 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~-~~~~~kl~Dfg~~~~  169 (283)
T 3gen_A           97 ITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVN-DQGVVKVSDFGLSRY  169 (283)
T ss_dssp             EECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEEC-TTSCEEECSTTGGGG
T ss_pred             EEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEc-CCCCEEEcccccccc
Confidence            999999988877653    389999999999999999999999999999999999999 667899999999974

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=2.6e-40  Score=361.82  Aligned_cols=149  Identities=22%  Similarity=0.307  Sum_probs=132.6

Q ss_pred             cccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          194 AKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       194 ~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      ..+..+.++|.+.+.||+|+||.||+|++..+++.||||++.....   ...+.+|+.++++++|+| |+++++++...+
T Consensus       107 ~~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~  185 (377)
T 3cbl_A          107 DKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN-IVRLIGVCTQKQ  185 (377)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTT-BCCEEEEECSSS
T ss_pred             cccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCC-EEEEEEEEecCC
Confidence            3445567899999999999999999999998999999999875432   245778999999999999 999999999999


Q ss_pred             eeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          271 SDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..|+||||++++++..+.+    .+++..+..++.||+.||+|||++||+||||||+|||++ .++.+||+|||+++.
T Consensus       186 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~-~~~~~kl~DfG~s~~  262 (377)
T 3cbl_A          186 PIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVT-EKNVLKISDFGMSRE  262 (377)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTCCEEECCGGGCEE
T ss_pred             CcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEc-CCCcEEECcCCCcee
Confidence            9999999999888776653    389999999999999999999999999999999999998 667899999999974

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=2.7e-40  Score=351.02  Aligned_cols=152  Identities=21%  Similarity=0.278  Sum_probs=131.7

Q ss_pred             ccccccCCCCCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEe
Q 004835          191 QTNAKVLPNFESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKY  262 (728)
Q Consensus       191 ~~~~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl  262 (728)
                      +...++....++|.+.+.||+|+||.||+|++.     .+++.||||++.....   ...+.+|+.+++.+.|+| |+++
T Consensus        15 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~   93 (322)
T 1p4o_A           15 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHH-VVRL   93 (322)
T ss_dssp             CCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTT-BCCE
T ss_pred             cChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCC-Eeee
Confidence            344455556789999999999999999999876     3578999999875433   345789999999999998 9999


Q ss_pred             cceEEeCCeeEEEEeccCCCChHHHhh-------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec
Q 004835          263 EGCFKCGDSDCFVLEHVKHDRPEVLKK-------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC  329 (728)
Q Consensus       263 ~~~~~~~~~~~LV~E~~~~~~l~~l~~-------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~  329 (728)
                      ++++..++..|+||||+.++++..+..             .+++..+..++.||+.||.|||++||+||||||+|||++ 
T Consensus        94 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~-  172 (322)
T 1p4o_A           94 LGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVA-  172 (322)
T ss_dssp             EEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEEC-
T ss_pred             EEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEc-
Confidence            999999999999999999988876653             247889999999999999999999999999999999999 


Q ss_pred             CCCceEEEeeecccc
Q 004835          330 KAVKGYLIDFNLAMV  344 (728)
Q Consensus       330 ~~~~~kL~DFGlA~~  344 (728)
                      .++.+||+|||++..
T Consensus       173 ~~~~~kl~Dfg~~~~  187 (322)
T 1p4o_A          173 EDFTVKIGDFGMTRD  187 (322)
T ss_dssp             TTCCEEECCTTCCCG
T ss_pred             CCCeEEECcCccccc
Confidence            667899999999864

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=4.9e-40  Score=351.62  Aligned_cols=145  Identities=22%  Similarity=0.321  Sum_probs=128.7

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeC
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      ...++|++.+.||+|+||.||+|++.     .+++.||||++.....   ...+.+|+.++.+++|+| |+++++++..+
T Consensus        44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~  122 (343)
T 1luf_A           44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPN-IVKLLGVCAVG  122 (343)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEECSS
T ss_pred             ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCC-EEEEEEEEccC
Confidence            34578999999999999999999997     3458999999876433   356889999999999999 99999999999


Q ss_pred             CeeEEEEeccCCCChHHHhh---------------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCC
Q 004835          270 DSDCFVLEHVKHDRPEVLKK---------------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKP  322 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~---------------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKP  322 (728)
                      +..|+||||+.++++..+..                           .+++..++.++.||+.||.|||++||+||||||
T Consensus       123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp  202 (343)
T 1luf_A          123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLAT  202 (343)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred             CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCc
Confidence            99999999999988877652                           378889999999999999999999999999999


Q ss_pred             CceEeecCCCceEEEeeecccc
Q 004835          323 GNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       323 eNILld~~~~~~kL~DFGlA~~  344 (728)
                      +|||++ .++.+||+|||++..
T Consensus       203 ~NIl~~-~~~~~kl~Dfg~~~~  223 (343)
T 1luf_A          203 RNCLVG-ENMVVKIADFGLSRN  223 (343)
T ss_dssp             GGEEEC-GGGCEEECCCSCHHH
T ss_pred             ceEEEC-CCCeEEEeecCCCcc
Confidence            999999 666899999999975

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.7e-39  Score=355.73  Aligned_cols=147  Identities=21%  Similarity=0.254  Sum_probs=128.7

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcC-------CCeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecc
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKN-------DGTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEG  264 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~-------~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~  264 (728)
                      +....++|.+.+.||+|+||.||+|++..       .+..||||++.....   ...+.+|+.++.++ +|+| |+++++
T Consensus        64 ~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpn-Iv~~~~  142 (382)
T 3tt0_A           64 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN-IINLLG  142 (382)
T ss_dssp             TBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT-BCCEEE
T ss_pred             cccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCch-hhhhee
Confidence            34455799999999999999999999753       336899999876533   35678999999999 8888 999999


Q ss_pred             eEEeCCeeEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCce
Q 004835          265 CFKCGDSDCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNF  325 (728)
Q Consensus       265 ~~~~~~~~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNI  325 (728)
                      ++...+..|+||||+.+++|..+..                   .+++..++.++.||+.||.|||++||+||||||+||
T Consensus       143 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NI  222 (382)
T 3tt0_A          143 ACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNV  222 (382)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGE
T ss_pred             eeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceE
Confidence            9999999999999999988877653                   278999999999999999999999999999999999


Q ss_pred             EeecCCCceEEEeeecccc
Q 004835          326 LFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       326 Lld~~~~~~kL~DFGlA~~  344 (728)
                      ||+ .++.+||+|||++..
T Consensus       223 ll~-~~~~~kL~DFG~a~~  240 (382)
T 3tt0_A          223 LVT-EDNVMKIADFGLARD  240 (382)
T ss_dssp             EEC-TTCCEEECSCSCCCC
T ss_pred             EEc-CCCcEEEcccCcccc
Confidence            999 667899999999974

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=3.1e-40  Score=344.79  Aligned_cols=144  Identities=22%  Similarity=0.300  Sum_probs=126.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCC-------eEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDG-------TVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g-------~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      .++|.+.+.||+|+||.||+|++..++       ..||+|++...  ...+.+.+|+.++.+++|+| |+++++++..++
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~   85 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKH-LVLNYGVCVCGD   85 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTT-BCCEEEEECCTT
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCC-EeEEEEEEEeCC
Confidence            468999999999999999999998776       57999998643  33466889999999999999 999999999999


Q ss_pred             eeEEEEeccCCCChHHHhhc----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCc-------eEEEee
Q 004835          271 SDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK-------GYLIDF  339 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~~----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~-------~kL~DF  339 (728)
                      ..|+||||+.++++..+...    +++..+..++.||+.||.|||++||+||||||+|||++.++..       +||+||
T Consensus        86 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Df  165 (289)
T 4fvq_A           86 ENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDP  165 (289)
T ss_dssp             CCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceeeeccC
Confidence            99999999999888776532    8899999999999999999999999999999999999844322       899999


Q ss_pred             ecccc
Q 004835          340 NLAMV  344 (728)
Q Consensus       340 GlA~~  344 (728)
                      |++..
T Consensus       166 g~~~~  170 (289)
T 4fvq_A          166 GISIT  170 (289)
T ss_dssp             CSCTT
T ss_pred             ccccc
Confidence            98853

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=2e-40  Score=356.86  Aligned_cols=142  Identities=20%  Similarity=0.231  Sum_probs=118.2

Q ss_pred             CCCCeeEEE-EecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHH-HHHHhcCCCCceEEecceEEe----CCee
Q 004835          199 NFESFIVEE-EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNEL-RMLERFGGKNFIIKYEGCFKC----GDSD  272 (728)
Q Consensus       199 ~~~~y~i~~-~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei-~iL~~L~h~n~Ivkl~~~~~~----~~~~  272 (728)
                      ..++|.+.+ .||+|+||.||+|++..+|+.||||++....   ...+|+ ..+..+.|+| |+++++++..    +...
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~e~~~~~~~~~h~~-i~~~~~~~~~~~~~~~~~  101 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP---KARQEVDHHWQASGGPH-IVCILDVYENMHHGKRCL  101 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH---HHHHHHHHHHHHTTSTT-BCCEEEEEEEEETTEEEE
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH---HHHHHHHHHHHhcCCCC-hHHHHHHHhhccCCCceE
Confidence            457899965 6999999999999999999999999986532   222333 3466778888 9999999876    4568


Q ss_pred             EEEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~DFGlA~~  344 (728)
                      |+||||+.++++..+..     .+++..++.++.||+.||.|||++||+||||||+||||+.+  ++.+||+|||++..
T Consensus       102 ~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~  180 (336)
T 3fhr_A          102 LIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKE  180 (336)
T ss_dssp             EEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred             EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEecccccee
Confidence            99999999988776653     38899999999999999999999999999999999999743  45599999999864

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.7e-40  Score=364.05  Aligned_cols=142  Identities=23%  Similarity=0.320  Sum_probs=126.9

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCC--eeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD--SDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~--~~~LV  275 (728)
                      ++|.+.+.||+|+||+||+|++..+|+.||||++...   .....+.+|+.++++++|+| |+++++++....  ..|+|
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpn-Iv~~~~~~~~~~~~~~~lv   87 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN-IVKLFAIEEETTTRHKVLI   87 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTT-BCCEEEEEECTTTCCEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCC-CCeEEEeeccCCCCeeEEE
Confidence            5799999999999999999999999999999998753   33456789999999999999 999999988655  78999


Q ss_pred             EeccCCCChHHHhhc------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEe----ecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKKE------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLF----SCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~~------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILl----d~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++++..+...      +++..++.++.||+.||.|||++||+||||||+|||+    + ....+||+|||+++.
T Consensus        88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~-~~~~~kL~DFG~a~~  165 (396)
T 4eut_A           88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGED-GQSVYKLTDFGAARE  165 (396)
T ss_dssp             ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTT-SCEEEEECCGGGCEE
T ss_pred             EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCC-CceeEEEecCCCceE
Confidence            999999888777643      8999999999999999999999999999999999998    4 556799999999975

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=1.7e-40  Score=354.03  Aligned_cols=149  Identities=21%  Similarity=0.281  Sum_probs=125.8

Q ss_pred             cccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHH-HHHhcCCCCceEEecceEEeC
Q 004835          194 AKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELR-MLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       194 ~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~-iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      ..+....++|++.+.||+|+||.||+|.+..+|+.||||++.....   ...+..|+. +++.+.|+| |+++++++...
T Consensus        15 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~n-iv~~~~~~~~~   93 (327)
T 3aln_A           15 QHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPY-IVQFYGALFRE   93 (327)
T ss_dssp             EEECCCSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTT-BCCEEEEEECS
T ss_pred             HhcccCHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCc-EeeeeeEEEeC
Confidence            3444567899999999999999999999999999999999875432   234555665 667788888 99999999999


Q ss_pred             CeeEEEEeccCCCChHHHh-------hcCChHHHHHHHHHHHHHHHHHHhC-CcEeccCCCCceEeecCCCceEEEeeec
Q 004835          270 DSDCFVLEHVKHDRPEVLK-------KEIDLSQLQWYGYCLFRALASLHKQ-GIVHRDVKPGNFLFSCKAVKGYLIDFNL  341 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~-------~~l~~~~~~~i~~QIl~aL~yLHs~-gIIHRDIKPeNILld~~~~~~kL~DFGl  341 (728)
                      +..|+||||+.+++...+.       ..+++..+..++.|++.||.|||++ ||+||||||+|||++ .++.+||+|||+
T Consensus        94 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~-~~~~~kl~Dfg~  172 (327)
T 3aln_A           94 GDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLD-RSGNIKLCDFGI  172 (327)
T ss_dssp             SEEEEEECCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEE-TTTEEEECCCSS
T ss_pred             CceEEEEeecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEc-CCCCEEEccCCC
Confidence            9999999999986544443       2378999999999999999999999 999999999999999 677899999999


Q ss_pred             ccc
Q 004835          342 AMV  344 (728)
Q Consensus       342 A~~  344 (728)
                      +..
T Consensus       173 ~~~  175 (327)
T 3aln_A          173 SGQ  175 (327)
T ss_dssp             SCC
T ss_pred             cee
Confidence            864

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=8.1e-40  Score=349.64  Aligned_cols=143  Identities=20%  Similarity=0.255  Sum_probs=123.2

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeE----EEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTV----VAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~----VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ..++|++.+.||+|+||.||+|++..+++.    ||+|.+...   .....+.+|+.++..++|+| |+++++++. +..
T Consensus        11 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~-~~~   88 (325)
T 3kex_A           11 KETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAH-IVRLLGLCP-GSS   88 (325)
T ss_dssp             CTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTT-BCCEEEEEC-BSS
T ss_pred             CHhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCC-cCeEEEEEc-CCc
Confidence            346899999999999999999999888765    777776533   22345678999999999999 999999886 567


Q ss_pred             eEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .++||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+||||+ .++.+||+|||+++.
T Consensus        89 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~-~~~~~kl~Dfg~a~~  164 (325)
T 3kex_A           89 LQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLK-SPSQVQVADFGVADL  164 (325)
T ss_dssp             EEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEES-SSSCEEECSCSGGGG
T ss_pred             cEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEEC-CCCeEEECCCCcccc
Confidence            899999999887765542    488999999999999999999999999999999999998 667899999999975

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-39  Score=349.92  Aligned_cols=146  Identities=21%  Similarity=0.269  Sum_probs=127.4

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCc---CchhHHHHHHHHHHhc-CCCCceEEecceEE
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHAN---ASKHYVSNELRMLERF-GGKNFIIKYEGCFK  267 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~  267 (728)
                      ....++|.+.+.||+|+||.||+|++.     .++..||||++...   .....+.+|+.++.++ .|+| |+++++++.
T Consensus        41 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~-iv~~~~~~~  119 (344)
T 1rjb_A           41 EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHEN-IVNLLGACT  119 (344)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTT-BCCEEEEEC
T ss_pred             ccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCC-eeeEEEEEe
Confidence            345679999999999999999999973     45678999998743   2346788999999999 8888 999999999


Q ss_pred             eCCeeEEEEeccCCCChHHHhhc--------------------------CChHHHHHHHHHHHHHHHHHHhCCcEeccCC
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKKE--------------------------IDLSQLQWYGYCLFRALASLHKQGIVHRDVK  321 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~~--------------------------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIK  321 (728)
                      ..+..|+||||++++++..+...                          +++..++.++.||+.||.|||++||+|||||
T Consensus       120 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik  199 (344)
T 1rjb_A          120 LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLA  199 (344)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCS
T ss_pred             eCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            99999999999999888766532                          6888999999999999999999999999999


Q ss_pred             CCceEeecCCCceEEEeeecccc
Q 004835          322 PGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       322 PeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||+ .++.+||+|||++..
T Consensus       200 p~NIll~-~~~~~kL~Dfg~~~~  221 (344)
T 1rjb_A          200 ARNVLVT-HGKVVKICDFGLARD  221 (344)
T ss_dssp             GGGEEEE-TTTEEEECCCGGGSC
T ss_pred             hhhEEEc-CCCcEEeCCCccCcc
Confidence            9999999 677899999999974

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=7.4e-40  Score=347.05  Aligned_cols=145  Identities=27%  Similarity=0.330  Sum_probs=121.7

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCC-CCceEEecceEEeCCe
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGG-KNFIIKYEGCFKCGDS  271 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h-~n~Ivkl~~~~~~~~~  271 (728)
                      ...-++|.+.+.||+|+||.||+|.+. +++.||||++....    ....+.+|+.++.++.| +++|+++++++.....
T Consensus        24 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~  102 (313)
T 3cek_A           24 SVKGRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQY  102 (313)
T ss_dssp             EETTEEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSE
T ss_pred             eeccceEEEEEEecCCCCEEEEEEEcC-CCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCE
Confidence            334568999999999999999999985 58999999986432    23567899999999985 3349999999999999


Q ss_pred             eEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .|+|||+..+.+.+.+..  .+++..+..++.||+.||.|||++||+||||||+|||++ + +.+||+|||++..
T Consensus       103 ~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~-~~~kL~Dfg~~~~  175 (313)
T 3cek_A          103 IYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-D-GMLKLIDFGIANQ  175 (313)
T ss_dssp             EEEEECCCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-T-TEEEECCCSSSCC
T ss_pred             EEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEE-C-CeEEEeecccccc
Confidence            999999554444444433  388999999999999999999999999999999999997 4 6799999999874

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1.1e-39  Score=340.43  Aligned_cols=147  Identities=18%  Similarity=0.234  Sum_probs=132.1

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +....++|++.+.||+|+||.||+|.+..++..||+|++.... ..+.+.+|+.++++++|+| |+++++++......|+
T Consensus         8 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~~   86 (288)
T 3kfa_A            8 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN-LVQLLGVCTREPPFYI   86 (288)
T ss_dssp             TBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTT-BCCEEEEECSSSSEEE
T ss_pred             ccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEccCCCEEE
Confidence            3345678999999999999999999999999999999987654 3467889999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.++++..+...     +++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        87 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~-~~~~~~l~Dfg~~~~  160 (288)
T 3kfa_A           87 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVG-ENHLVKVADFGLSRL  160 (288)
T ss_dssp             EEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEEC-GGGCEEECCCCGGGT
T ss_pred             EEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEc-CCCCEEEccCcccee
Confidence            9999998888776532     88999999999999999999999999999999999998 666899999999975

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-40  Score=370.25  Aligned_cols=141  Identities=26%  Similarity=0.253  Sum_probs=115.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEecc
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLEHV  279 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E~~  279 (728)
                      .+|.+.+.||+|+||+||... ..+|+.||||++..... ..+.+|+.+|+.+ .|+| |+++++++......|+||||+
T Consensus        24 ~~y~~~~~LG~G~~G~V~~~~-~~~~~~vAvK~~~~~~~-~~~~~E~~~l~~l~~Hpn-Iv~l~~~~~~~~~~~lv~E~~  100 (432)
T 3p23_A           24 ISFCPKDVLGHGAEGTIVYRG-MFDNRDVAVKRILPECF-SFADREVQLLRESDEHPN-VIRYFCTEKDRQFQYIAIELC  100 (432)
T ss_dssp             EEEEEEEEEEECGGGCEEEEE-ESSSSEEEEEEECTTTE-EECHHHHHHHHHSCCCTT-BCCEEEEEEETTEEEEEEECC
T ss_pred             EEEecCCeeecCcCEEEEEEE-EeCCeEEEEEEECHHHH-HHHHHHHHHHHhccCCCC-cCeEEEEEecCCEEEEEEECC
Confidence            469999999999999966433 34799999999865432 3356899999999 6888 999999999999999999999


Q ss_pred             CCCChHHHhhc---CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC----CCceEEEeeecccc
Q 004835          280 KHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK----AVKGYLIDFNLAMV  344 (728)
Q Consensus       280 ~~~~l~~l~~~---l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~----~~~~kL~DFGlA~~  344 (728)
                      .+++.+.+...   +.+..+..++.||+.||.|||++||+||||||+||||+.+    ...+||+|||+|+.
T Consensus       101 ~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~  172 (432)
T 3p23_A          101 AATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKK  172 (432)
T ss_dssp             SEEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEEC
T ss_pred             CCCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceee
Confidence            87555544432   4555678999999999999999999999999999999522    23578999999975

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=9.3e-40  Score=349.81  Aligned_cols=142  Identities=20%  Similarity=0.248  Sum_probs=119.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeE----EEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTV----VAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~----VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .++|++.+.||+|+||+||+|++..+++.    ||+|.+...   .....+.+|+.++.+++|+| |+++++++..+ ..
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~-~~   91 (327)
T 3poz_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH-VCRLLGICLTS-TV   91 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTT-BCCEEEEEESS-SE
T ss_pred             HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCC-EeEEEEEEecC-Ce
Confidence            46899999999999999999999877765    578877532   34567889999999999999 99999999865 47


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++|+||+.++.+..+..    .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+|+.
T Consensus        92 ~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~-~~~~~kl~Dfg~a~~  166 (327)
T 3poz_A           92 QLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVK-TPQHVKITDFGLAKL  166 (327)
T ss_dssp             EEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEE-ETTEEEECCTTHHHH
T ss_pred             EEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEEC-CCCCEEEccCcceeE
Confidence            89999999988876653    388999999999999999999999999999999999999 667899999999975

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=1.8e-39  Score=339.01  Aligned_cols=143  Identities=24%  Similarity=0.263  Sum_probs=122.6

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---------hhHHHHHHHHHHhcCCCCceEEecceEEeC
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---------KHYVSNELRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---------~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      ..++|++.+.||+|+||.||+|++..+++.||||++.....         ...+.+|+.++.+++|+| |+++++++...
T Consensus        17 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~   95 (287)
T 4f0f_A           17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPN-IVKLYGLMHNP   95 (287)
T ss_dssp             CSTTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTT-BCCEEEEETTT
T ss_pred             hhccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCC-chhhheeecCC
Confidence            45789999999999999999999999999999999864321         156889999999999999 99999998654


Q ss_pred             CeeEEEEeccCCCChHHHh----hcCChHHHHHHHHHHHHHHHHHHhCC--cEeccCCCCceEeecCCC----ceEEEee
Q 004835          270 DSDCFVLEHVKHDRPEVLK----KEIDLSQLQWYGYCLFRALASLHKQG--IVHRDVKPGNFLFSCKAV----KGYLIDF  339 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~----~~l~~~~~~~i~~QIl~aL~yLHs~g--IIHRDIKPeNILld~~~~----~~kL~DF  339 (728)
                      .  ++||||+.++.+....    ..+++..+..++.||+.||.|||++|  |+||||||+|||++.++.    .+||+||
T Consensus        96 ~--~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Df  173 (287)
T 4f0f_A           96 P--RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADF  173 (287)
T ss_dssp             T--EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCC
T ss_pred             C--eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCC
Confidence            4  7999999988775543    23889999999999999999999999  999999999999983332    3899999


Q ss_pred             ecccc
Q 004835          340 NLAMV  344 (728)
Q Consensus       340 GlA~~  344 (728)
                      |++..
T Consensus       174 g~~~~  178 (287)
T 4f0f_A          174 GLSQQ  178 (287)
T ss_dssp             TTCBC
T ss_pred             Ccccc
Confidence            99863

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1e-39  Score=342.74  Aligned_cols=143  Identities=23%  Similarity=0.332  Sum_probs=125.4

Q ss_pred             CCCeeEEEEecccCceEEEEEE----EcCCCeEEEEEeccCcCc--hhHHHHHHHHHHhcCCCCceEEecceEEe--CCe
Q 004835          200 FESFIVEEEEGSGGYGTVYRAR----RKNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEGCFKC--GDS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~----~~~~g~~VAIK~i~~~~~--~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--~~~  271 (728)
                      .++|++.+.||+|+||+||+|+    ...+++.||||++.....  ...+.+|+.++.+++|+| |+++++++..  ...
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~   87 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN-IVKYKGVCYSAGRRN   87 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEECHHHHTS
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEecCCCCc
Confidence            4689999999999999999999    456899999999875432  356889999999999999 9999998854  356


Q ss_pred             eEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .|+||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus        88 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~-~~~~~kl~Dfg~~~~  163 (295)
T 3ugc_A           88 LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVE-NENRVKIGDFGLTKV  163 (295)
T ss_dssp             CEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEE-ETTEEEECCCCSCC-
T ss_pred             eEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEc-CCCeEEEccCccccc
Confidence            899999999988877653    389999999999999999999999999999999999999 667899999999975

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.7e-39  Score=339.10  Aligned_cols=144  Identities=26%  Similarity=0.300  Sum_probs=120.3

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCC---CeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKND---GTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~---g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ...++|++.+.||+|+||.||+|++..+   +..||+|++.....   .+.+.+|+.++.+++|+| |+++++++. .+.
T Consensus        12 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~-~~~   89 (281)
T 1mp8_A           12 IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPH-IVKLIGVIT-ENP   89 (281)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTT-BCCEEEEEC-SSS
T ss_pred             EehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCc-cceEEEEEc-cCc
Confidence            3457899999999999999999998653   56799999875432   356889999999999999 999999874 567


Q ss_pred             eEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .|+||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~-~~~~~kl~Dfg~~~~  165 (281)
T 1mp8_A           90 VWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVS-SNDCVKLGDFGLSRY  165 (281)
T ss_dssp             CEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEE-ETTEEEECC------
T ss_pred             cEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEEC-CCCCEEECccccccc
Confidence            899999999988877653    388999999999999999999999999999999999999 667899999999975

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=3e-40  Score=352.82  Aligned_cols=147  Identities=22%  Similarity=0.302  Sum_probs=127.6

Q ss_pred             cccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCC--
Q 004835          194 AKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD--  270 (728)
Q Consensus       194 ~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~--  270 (728)
                      ..+....++|++.+.||+|+||+||+|++.  ++.||||++.... ......+|+.++.+++|+| |+++++++....  
T Consensus        17 ~n~~~~~~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~~~~~   93 (322)
T 3soc_A           17 ENLYFQSMPLQLLEVKARGRFGCVWKAQLL--NEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHEN-ILQFIGAEKRGTSV   93 (322)
T ss_dssp             CCEEETTEEEEEEEEEECSTTCEEEEEEET--TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTT-BCCEEEEEEEECSS
T ss_pred             cccccchhhchhhheecccCceEEEEEEEC--CCEEEEEEeecCchHHHHHHHHHHHHhcCCCCC-chhhcceeccCCCC
Confidence            344456679999999999999999999984  8999999987543 2334567899999999999 999999998754  


Q ss_pred             --eeEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhC----------CcEeccCCCCceEeecCCCceEE
Q 004835          271 --SDCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQ----------GIVHRDVKPGNFLFSCKAVKGYL  336 (728)
Q Consensus       271 --~~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~----------gIIHRDIKPeNILld~~~~~~kL  336 (728)
                        .+|+||||+.++++..+.+  .+++..++.++.||+.||.|||+.          ||+||||||+|||++ .++.+||
T Consensus        94 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~-~~~~~kL  172 (322)
T 3soc_A           94 DVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLK-NNLTACI  172 (322)
T ss_dssp             SEEEEEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEEC-TTCCEEE
T ss_pred             CceEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEEC-CCCeEEE
Confidence              3699999999998887764  389999999999999999999999          999999999999999 6678999


Q ss_pred             Eeeecccc
Q 004835          337 IDFNLAMV  344 (728)
Q Consensus       337 ~DFGlA~~  344 (728)
                      +|||+++.
T Consensus       173 ~DFg~a~~  180 (322)
T 3soc_A          173 ADFGLALK  180 (322)
T ss_dssp             CCCTTCEE
T ss_pred             ccCCcccc
Confidence            99999975

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=2.6e-39  Score=333.43  Aligned_cols=145  Identities=19%  Similarity=0.223  Sum_probs=130.0

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ..+.++|++.+.||+|+||.||+|.+. +++.||+|++.... ..+.+.+|+.++.+++|++ |+++++++...+..|+|
T Consensus         4 ~i~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~lv   81 (267)
T 3t9t_A            4 VIDPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK-LVQLYGVCLEQAPICLV   81 (267)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTT-BCCEEEEECSSSSCEEE
T ss_pred             EEchhheeeeeEecCCCceeEEEEEec-CCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCC-EeeEEEEEccCCCeEEE
Confidence            345678999999999999999999996 67899999987643 4567889999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        82 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~-~~~~~kl~dfg~~~~  153 (267)
T 3t9t_A           82 TEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVG-ENQVIKVSDFGMTRF  153 (267)
T ss_dssp             ECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEEC-GGGCEEECCTTGGGG
T ss_pred             EeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEC-CCCCEEEcccccccc
Confidence            99999988877653    278999999999999999999999999999999999998 667799999999874

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=2.9e-39  Score=340.79  Aligned_cols=147  Identities=22%  Similarity=0.303  Sum_probs=129.2

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEE-----cCCCeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecceE
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARR-----KNDGTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGCF  266 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~-----~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~  266 (728)
                      +....++|.+.+.||+|+||.||+|++     ..+++.||||++.....   .+.+.+|+.++.++ +|+| |+++++++
T Consensus        18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~-i~~~~~~~   96 (313)
T 1t46_A           18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMN-IVNLLGAC   96 (313)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT-BCCEEEEE
T ss_pred             cccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCC-eeeEEEEE
Confidence            334557899999999999999999985     35678999999875532   45688999999999 8888 99999999


Q ss_pred             EeCCeeEEEEeccCCCChHHHhh---------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCce
Q 004835          267 KCGDSDCFVLEHVKHDRPEVLKK---------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNF  325 (728)
Q Consensus       267 ~~~~~~~LV~E~~~~~~l~~l~~---------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNI  325 (728)
                      ..++..++||||+.++++..+..                     .+++..++.++.||+.||.|||++||+||||||+||
T Consensus        97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Ni  176 (313)
T 1t46_A           97 TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI  176 (313)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             ecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceE
Confidence            99999999999999988776643                     278899999999999999999999999999999999


Q ss_pred             EeecCCCceEEEeeecccc
Q 004835          326 LFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       326 Lld~~~~~~kL~DFGlA~~  344 (728)
                      |++ .++.+||+|||++..
T Consensus       177 l~~-~~~~~kl~Dfg~~~~  194 (313)
T 1t46_A          177 LLT-HGRITKICDFGLARD  194 (313)
T ss_dssp             EEE-TTTEEEECCCGGGSC
T ss_pred             EEc-CCCCEEEcccccccc
Confidence            999 677899999999874

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=2e-39  Score=334.09  Aligned_cols=142  Identities=13%  Similarity=0.196  Sum_probs=125.7

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeC--Ce
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCG--DS  271 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~--~~  271 (728)
                      ..+++|.+.+.||+|+||.||+|++  +++.||||++....    ....+.+|+.++.+++|+| |+++++++...  ..
T Consensus         7 i~~~~y~~~~~lg~G~~g~V~~~~~--~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~   83 (271)
T 3kmu_A            7 IDFKQLNFLTKLNENHSGELWKGRW--QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPN-VLPVLGACQSPPAPH   83 (271)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTT-EECEEEEECTTTSSS
T ss_pred             CCHHHhHHHHHhcCCCcceEEEEEE--CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCc-hhheEEEEccCCCCC
Confidence            4567999999999999999999999  48999999987543    2346889999999999999 99999999877  78


Q ss_pred             eEEEEeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCC--cEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          272 DCFVLEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQG--IVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~g--IIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      .++||||+.++++..+...     +++..+..++.||+.||.|||++|  |+||||||+|||++ .++.++|+|||++.
T Consensus        84 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~-~~~~~~l~~~~~~~  161 (271)
T 3kmu_A           84 PTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMID-EDMTARISMADVKF  161 (271)
T ss_dssp             CEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEEC-TTSCEEEEGGGSCC
T ss_pred             eEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEc-CCcceeEEecccee
Confidence            8999999999888777642     789999999999999999999999  99999999999999 66778999988764

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-39  Score=342.98  Aligned_cols=142  Identities=26%  Similarity=0.357  Sum_probs=123.6

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      .+.++|++.+.||+|+||.||+|++  .++.||||++........+.+|+.++++++|+| |+++++++.  +..|+|||
T Consensus         5 i~~~~~~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~--~~~~lv~e   79 (307)
T 2eva_A            5 IDYKEIEVEEVVGRGAFGVVCKAKW--RAKDVAIKQIESESERKAFIVELRQLSRVNHPN-IVKLYGACL--NPVCLVME   79 (307)
T ss_dssp             CCGGGEEEEEEEECCSSSEEEEEEE--TTEEEEEEECSSTTHHHHHHHHHHHHHHCCCTT-BCCEEEBCT--TTTEEEEE
T ss_pred             CCHhHeeeeeEeecCCCceEEEEEE--CCeeEEEEEecChhHHHHHHHHHHHHhcCCCCC-cCeEEEEEc--CCcEEEEE
Confidence            3467899999999999999999998  488999999987766778899999999999999 999998876  45899999


Q ss_pred             ccCCCChHHHhhc------CChHHHHHHHHHHHHHHHHHHh---CCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          278 HVKHDRPEVLKKE------IDLSQLQWYGYCLFRALASLHK---QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       278 ~~~~~~l~~l~~~------l~~~~~~~i~~QIl~aL~yLHs---~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+.++++..+...      +++..+..++.||+.||.|||+   +||+||||||+|||++.++..+||+|||++..
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~  155 (307)
T 2eva_A           80 YAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACD  155 (307)
T ss_dssp             CCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---
T ss_pred             cCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccc
Confidence            9999888777642      6788899999999999999999   89999999999999985555589999999863

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=2.6e-39  Score=336.74  Aligned_cols=148  Identities=20%  Similarity=0.253  Sum_probs=125.1

Q ss_pred             ccccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEe-CCe
Q 004835          193 NAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKC-GDS  271 (728)
Q Consensus       193 ~~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~-~~~  271 (728)
                      ...+....++|++.+.||+|+||.||+|.+  +|+.||||++......+.+.+|+.++.+++|+| |+++++++.. .+.
T Consensus        13 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~   89 (278)
T 1byg_A           13 RSGWALNMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSN-LVQLLGVIVEEKGG   89 (278)
T ss_dssp             --CCBCCGGGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCCC--HHHHHTHHHHTTCCCTT-BCCEEEEECCC--C
T ss_pred             hccccCChhhceEEeEEecCCCceEEEEEE--cCCEEEEEEecchhHHHHHHHHHHHHHhCCCCC-EeeEEEEEEcCCCc
Confidence            334455678999999999999999999998  589999999987777778899999999999999 9999998654 457


Q ss_pred             eEEEEeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .|+||||+.++++..+...     +++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~-~~~~~~l~Dfg~~~~  166 (278)
T 1byg_A           90 LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVS-EDNVAKVSDFGLTKE  166 (278)
T ss_dssp             CEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC-TTSCEEECCCCC---
T ss_pred             eEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEe-CCCcEEEeecccccc
Confidence            8999999999877666532     88999999999999999999999999999999999999 667899999999863

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=5.1e-39  Score=360.22  Aligned_cols=146  Identities=20%  Similarity=0.254  Sum_probs=130.6

Q ss_pred             ccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCC-eeE
Q 004835          195 KVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD-SDC  273 (728)
Q Consensus       195 ~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~-~~~  273 (728)
                      .+....++|++.+.||+|+||.||+|.+  .|+.||||+++.....+.+.+|+.++++++|+| |+++++++.... ..|
T Consensus       187 ~~~i~~~~~~~~~~lG~G~fg~V~~~~~--~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~~~  263 (450)
T 1k9a_A          187 GWALNMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSN-LVQLLGVIVEEKGGLY  263 (450)
T ss_dssp             TCBCCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEESSCTTSHHHHHHHHHHHTCCCTT-BCCEEEEEECTTSCEE
T ss_pred             ccccChHHeEEEeeecCcCCeeEEEEEe--cCCeEEEEEeCCchHHHHHHHHHHHHHhccCCC-EEEEEEEEEcCCCceE
Confidence            3456678999999999999999999998  488999999987777788999999999999999 999999877655 799


Q ss_pred             EEEeccCCCChHHHhhc-----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKKE-----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~~-----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+.+++|..+...     +++..+..++.||+.||+|||++||+||||||+|||++ .++.+||+|||+++.
T Consensus       264 iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~-~~~~~kl~DfG~a~~  338 (450)
T 1k9a_A          264 IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVS-EDNVAKVSDFGLTKE  338 (450)
T ss_dssp             EEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEC-TTSCEEECCCTTCEE
T ss_pred             EEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEC-CCCCEEEeeCCCccc
Confidence            99999999888776542     68899999999999999999999999999999999999 667899999999874

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.3e-39  Score=341.64  Aligned_cols=145  Identities=23%  Similarity=0.301  Sum_probs=127.2

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+++|++.+.||+|+||.||+|++..+++.||||++.....     ...+.+|+.++.++.|+| |+++++++...+..
T Consensus        31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~-iv~~~~~~~~~~~~  109 (309)
T 2h34_A           31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPH-VVPIHDFGEIDGQL  109 (309)
T ss_dssp             ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTT-BCCEEEEEEETTEE
T ss_pred             cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCC-eeEEEEEEeeCCeE
Confidence            346899999999999999999999999999999999875422     356789999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||+.++.+..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus       110 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~-~~~~~kl~Dfg~~~~  183 (309)
T 2h34_A          110 YVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVS-ADDFAYLVDFGIASA  183 (309)
T ss_dssp             EEEEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTSCEEECSCCC---
T ss_pred             EEEEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEc-CCCCEEEecCccCcc
Confidence            99999999988877654   389999999999999999999999999999999999999 667899999999864

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=1.9e-39  Score=346.41  Aligned_cols=143  Identities=23%  Similarity=0.347  Sum_probs=126.2

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEE--EEEeccCc---CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCee
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVV--AIKCPHAN---ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~V--AIK~i~~~---~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .+++|++.+.||+|+||.||+|++..+|..+  |+|.+...   .....+.+|+.++.++ .|+| |+++++++...+..
T Consensus        23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~-iv~~~~~~~~~~~~  101 (327)
T 1fvr_A           23 DWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPN-IINLLGACEHRGYL  101 (327)
T ss_dssp             CGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTT-BCCEEEEEEETTEE
T ss_pred             cHHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCc-hhhhceeeeeCCce
Confidence            4579999999999999999999998888865  99987642   2345688999999999 7888 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCc
Q 004835          273 CFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVK  333 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~  333 (728)
                      |+||||++++++..+..                   .+++..++.++.||+.||.|||++||+||||||+|||++ .++.
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~  180 (327)
T 1fvr_A          102 YLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVG-ENYV  180 (327)
T ss_dssp             EEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-GGGC
T ss_pred             EEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEc-CCCe
Confidence            99999999988876652                   378899999999999999999999999999999999998 6668


Q ss_pred             eEEEeeeccc
Q 004835          334 GYLIDFNLAM  343 (728)
Q Consensus       334 ~kL~DFGlA~  343 (728)
                      +||+|||++.
T Consensus       181 ~kL~Dfg~~~  190 (327)
T 1fvr_A          181 AKIADFGLSR  190 (327)
T ss_dssp             EEECCTTCEE
T ss_pred             EEEcccCcCc
Confidence            9999999986

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=7e-39  Score=343.35  Aligned_cols=146  Identities=22%  Similarity=0.281  Sum_probs=126.8

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEc-------CCCeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecce
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRK-------NDGTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGC  265 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~-------~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~  265 (728)
                      ....++|.+.+.||+|+||.||+|++.       .++..||||++.....   ...+.+|+.++.++ .|+| |++++++
T Consensus        31 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~-iv~~~~~  109 (334)
T 2pvf_A           31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN-IINLLGA  109 (334)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTT-BCCEEEE
T ss_pred             cCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCC-EeeEEEE
Confidence            344579999999999999999999985       3578899999875433   34578999999999 7888 9999999


Q ss_pred             EEeCCeeEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceE
Q 004835          266 FKCGDSDCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFL  326 (728)
Q Consensus       266 ~~~~~~~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNIL  326 (728)
                      +...+..|+||||+.++++..+..                   .+++..++.++.||+.||.|||++||+||||||+|||
T Consensus       110 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl  189 (334)
T 2pvf_A          110 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVL  189 (334)
T ss_dssp             ECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE
T ss_pred             EccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEE
Confidence            999999999999999988877653                   2788899999999999999999999999999999999


Q ss_pred             eecCCCceEEEeeecccc
Q 004835          327 FSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       327 ld~~~~~~kL~DFGlA~~  344 (728)
                      ++ .++.+||+|||++..
T Consensus       190 l~-~~~~~kL~Dfg~~~~  206 (334)
T 2pvf_A          190 VT-ENNVMKIADFGLARD  206 (334)
T ss_dssp             EC-TTCCEEECCCTTCEE
T ss_pred             Ec-CCCCEEEcccccccc
Confidence            98 667899999999975

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=7.1e-40  Score=348.80  Aligned_cols=150  Identities=19%  Similarity=0.228  Sum_probs=131.9

Q ss_pred             cccccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeC
Q 004835          192 TNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       192 ~~~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      +..++....++|++.+.||+|+||.||+|++. +|+.||||++....  ....+.+|+.++..++|+| |+++++++...
T Consensus        30 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~  107 (321)
T 2qkw_B           30 PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPH-LVSLIGFCDER  107 (321)
T ss_dssp             CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECT-TCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTT-BCCEEEECCCT
T ss_pred             cHHHHHHHHhccCccceeecCCCeeEEEEEEC-CCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCC-EeeEEEEEcCC
Confidence            33445556789999999999999999999974 78999999887543  3456889999999999999 99999999999


Q ss_pred             CeeEEEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecc
Q 004835          270 DSDCFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                      +..|+||||+.++++..+..       .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++
T Consensus       108 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~-~~~~~kl~Dfg~~  186 (321)
T 2qkw_B          108 NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLD-ENFVPKITDFGIS  186 (321)
T ss_dssp             TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEEC-TTCCEEECCCTTC
T ss_pred             CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEEC-CCCCEEEeecccc
Confidence            99999999999988776652       278899999999999999999999999999999999999 6778999999998


Q ss_pred             cc
Q 004835          343 MV  344 (728)
Q Consensus       343 ~~  344 (728)
                      ..
T Consensus       187 ~~  188 (321)
T 2qkw_B          187 KK  188 (321)
T ss_dssp             EE
T ss_pred             cc
Confidence            74

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=1.1e-39  Score=348.17  Aligned_cols=145  Identities=17%  Similarity=0.247  Sum_probs=122.1

Q ss_pred             CCCCeeEEEEecccCceEEEEEE-----EcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          199 NFESFIVEEEEGSGGYGTVYRAR-----RKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~-----~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      ..++|.+.+.||+|+||.||+|+     ...+++.||||++....   ....+.+|+.++.++.|+| |+++++++....
T Consensus        28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~  106 (327)
T 2yfx_A           28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQN-IVRCIGVSLQSL  106 (327)
T ss_dssp             CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEECSSS
T ss_pred             ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCC-CCeEEEEEcCCC
Confidence            34689999999999999999999     45678899999986432   2346788999999999999 999999999999


Q ss_pred             eeEEEEeccCCCChHHHhh----------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEe
Q 004835          271 SDCFVLEHVKHDRPEVLKK----------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLID  338 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~----------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~D  338 (728)
                      ..|+||||+.++++..+..          .+++..++.++.||+.||.|||++||+||||||+||||+.+  +..++|+|
T Consensus       107 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~D  186 (327)
T 2yfx_A          107 PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGD  186 (327)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred             CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECc
Confidence            9999999999888876653          27888999999999999999999999999999999999832  34699999


Q ss_pred             eecccc
Q 004835          339 FNLAMV  344 (728)
Q Consensus       339 FGlA~~  344 (728)
                      ||++..
T Consensus       187 fg~~~~  192 (327)
T 2yfx_A          187 FGMARD  192 (327)
T ss_dssp             CHHHHH
T ss_pred             cccccc
Confidence            999874

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.8e-39  Score=336.67  Aligned_cols=144  Identities=19%  Similarity=0.273  Sum_probs=125.3

Q ss_pred             CCCCCeeEEE-EecccCceEEEEEEEc--CCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          198 PNFESFIVEE-EEGSGGYGTVYRARRK--NDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       198 ~~~~~y~i~~-~LG~G~fG~Vy~a~~~--~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ...++|.+.+ .||+|+||.||+|.+.  .++..||||++....   ..+.+.+|+.++.+++|+| |+++++++ ..+.
T Consensus         6 ~~~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~-~~~~   83 (287)
T 1u59_A            6 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPY-IVRLIGVC-QAEA   83 (287)
T ss_dssp             CCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEE-ESSS
T ss_pred             ccHHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCC-EeEEEEEe-cCCC
Confidence            3456788887 9999999999999864  467899999987643   2456889999999999999 99999998 5667


Q ss_pred             eEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .++||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        84 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~-~~~~~kl~Dfg~~~~  159 (287)
T 1u59_A           84 LMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLV-NRHYAKISDFGLSKA  159 (287)
T ss_dssp             EEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEE-ETTEEEECCCTTCEE
T ss_pred             cEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEc-CCCCEEECcccceee
Confidence            999999999988877652    389999999999999999999999999999999999999 667899999999975

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=6.6e-39  Score=336.29  Aligned_cols=147  Identities=21%  Similarity=0.255  Sum_probs=125.9

Q ss_pred             ccCCCCCCeeEEE-EecccCceEEEEEEE--cCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEE
Q 004835          195 KVLPNFESFIVEE-EEGSGGYGTVYRARR--KNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFK  267 (728)
Q Consensus       195 ~~~~~~~~y~i~~-~LG~G~fG~Vy~a~~--~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~  267 (728)
                      ++..+.++|.+.+ .||+|+||.||+|.+  ..+++.||||++.....    ...+.+|+.++..++|++ |+++++++ 
T Consensus        10 ~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~-   87 (291)
T 1xbb_A           10 EVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPY-IVRMIGIC-   87 (291)
T ss_dssp             -CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTT-BCCEEEEE-
T ss_pred             eeeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCC-EEEEEEEE-
Confidence            3444567899999 999999999999955  45678999999875422    456889999999999999 99999998 


Q ss_pred             eCCeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..+..|+||||+.++++..+..   .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        88 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~-~~~~~kl~Dfg~~~~  166 (291)
T 1xbb_A           88 EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLV-TQHYAKISDFGLSKA  166 (291)
T ss_dssp             ESSSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEE-ETTEEEECCCTTCEE
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEe-CCCcEEEccCCccee
Confidence            5678899999999988877654   389999999999999999999999999999999999999 567899999999875

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=3.7e-39  Score=365.97  Aligned_cols=147  Identities=18%  Similarity=0.228  Sum_probs=132.5

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +....++|.+.+.||+|+||.||+|.+..++..||||++.... ..+.+.+|+.++.+++|+| |+++++++......|+
T Consensus       215 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~l~~~~~~~~~~~l  293 (495)
T 1opk_A          215 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN-LVQLLGVCTREPPFYI  293 (495)
T ss_dssp             CBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTT-BCCEEEEECSSSSCEE
T ss_pred             cccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCC-EeeEEEEEecCCcEEE
Confidence            3445678999999999999999999999889999999987543 4567899999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.+++|..+.+     .+++..+..++.||+.||+|||++||+||||||+||||+ .++.+||+|||+++.
T Consensus       294 v~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~-~~~~~kl~DFG~a~~  367 (495)
T 1opk_A          294 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVG-ENHLVKVADFGLSRL  367 (495)
T ss_dssp             EEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-GGGCEEECCTTCEEC
T ss_pred             EEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEEC-CCCcEEEeeccccee
Confidence            999999988877653     278899999999999999999999999999999999998 667899999999975

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=6.4e-40  Score=349.13  Aligned_cols=151  Identities=26%  Similarity=0.378  Sum_probs=132.0

Q ss_pred             ccccccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEE
Q 004835          191 QTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFK  267 (728)
Q Consensus       191 ~~~~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~  267 (728)
                      ++..++....++|.+.+.||+|+||.||+|++. +|+.||||++....   ....+.+|+.++..+.|+| |+++++++.
T Consensus        20 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~   97 (326)
T 3uim_A           20 FSLRELQVASDNFSNKNILGRGGFGKVYKGRLA-DGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN-LLRLRGFCM   97 (326)
T ss_dssp             CCTHHHHTTTTSSCSTTEEECCSSSEEEEECCS-SSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTT-BCCCCEEEC
T ss_pred             ecHHHHHHHhhccccceeEecCCCcEEEEEEec-CCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCC-ccceEEEEe
Confidence            344455566789999999999999999999864 68999999987543   2346889999999999999 999999999


Q ss_pred             eCCeeEEEEeccCCCChHHHhhc-------CChHHHHHHHHHHHHHHHHHHhC---CcEeccCCCCceEeecCCCceEEE
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKKE-------IDLSQLQWYGYCLFRALASLHKQ---GIVHRDVKPGNFLFSCKAVKGYLI  337 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~~-------l~~~~~~~i~~QIl~aL~yLHs~---gIIHRDIKPeNILld~~~~~~kL~  337 (728)
                      .....++||||+.++++..+...       +++..+..++.||+.||.|||++   ||+||||||+|||++ .++.+||+
T Consensus        98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~-~~~~~kl~  176 (326)
T 3uim_A           98 TPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLD-EEFEAVVG  176 (326)
T ss_dssp             CSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEEC-TTCCEEEC
T ss_pred             cCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEEC-CCCCEEec
Confidence            99999999999999988776542       88899999999999999999999   999999999999999 66789999


Q ss_pred             eeecccc
Q 004835          338 DFNLAMV  344 (728)
Q Consensus       338 DFGlA~~  344 (728)
                      |||++..
T Consensus       177 Dfg~~~~  183 (326)
T 3uim_A          177 DFGLAKL  183 (326)
T ss_dssp             CCSSCEE
T ss_pred             cCccccc
Confidence            9999975

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=3.7e-39  Score=334.85  Aligned_cols=140  Identities=24%  Similarity=0.382  Sum_probs=124.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEe------------
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKC------------  268 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~------------  268 (728)
                      .+|++.+.||+|+||.||+|++..+|+.||+|++....  ..+.+|+.++.++.|+| |+++++++..            
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~e~~~l~~l~h~~-i~~~~~~~~~~~~~~~~~~~~~   87 (284)
T 2a19_B           11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN--EKAEREVKALAKLDHVN-IVHYNGCWDGFDYDPETSSKNS   87 (284)
T ss_dssp             HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS--GGGHHHHHHHHHCCCTT-BCCEEEEEEEEEEC--------
T ss_pred             cccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc--HHHHHHHHHHHhCCCCC-EEEEeeeEeccccCcccccccc
Confidence            47999999999999999999999899999999987543  45678999999999999 9999988754            


Q ss_pred             ----CCeeEEEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEee
Q 004835          269 ----GDSDCFVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDF  339 (728)
Q Consensus       269 ----~~~~~LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DF  339 (728)
                          ....|+||||+.++++..+..     .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+||
T Consensus        88 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~-~~~~~kl~Df  166 (284)
T 2a19_B           88 SRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLV-DTKQVKIGDF  166 (284)
T ss_dssp             -CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEE-ETTEEEECCC
T ss_pred             cccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEc-CCCCEEECcc
Confidence                455899999999988877652     388999999999999999999999999999999999999 6678999999


Q ss_pred             ecccc
Q 004835          340 NLAMV  344 (728)
Q Consensus       340 GlA~~  344 (728)
                      |++..
T Consensus       167 g~~~~  171 (284)
T 2a19_B          167 GLVTS  171 (284)
T ss_dssp             TTCEE
T ss_pred             hhhee
Confidence            99874

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=2.1e-38  Score=329.65  Aligned_cols=146  Identities=18%  Similarity=0.276  Sum_probs=128.5

Q ss_pred             ccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          195 KVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       195 ~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ++....++|++.+.||+|+||.||+|.+. ++..||||++.... ..+.+.+|+.++..+.|+| |+++++++. .+..+
T Consensus         7 ~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~-~~~~~   83 (279)
T 1qpc_A            7 EWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR-LVRLYAVVT-QEPIY   83 (279)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTT-BCCEEEEEC-SSSCE
T ss_pred             hcccCHHhhhheeeecCCCCeEEEEEEEc-CCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcC-cceEEEEEc-CCCcE
Confidence            34445679999999999999999999985 67889999987543 4567889999999999999 999998876 55689


Q ss_pred             EEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+.++++..+..     .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus        84 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~-~~~~~kl~Dfg~~~~  158 (279)
T 1qpc_A           84 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVS-DTLSCKIADFGLARL  158 (279)
T ss_dssp             EEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTSCEEECCCTTCEE
T ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEc-CCCCEEECCCccccc
Confidence            9999999988877754     489999999999999999999999999999999999999 677899999999975

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=8.8e-39  Score=341.34  Aligned_cols=148  Identities=22%  Similarity=0.255  Sum_probs=129.4

Q ss_pred             ccCCCCCCeeEEEEecccCceEEEEEEEcCCCe-----EEEEEeccCcC---chhHHHHHHHHHHhc-CCCCceEEecce
Q 004835          195 KVLPNFESFIVEEEEGSGGYGTVYRARRKNDGT-----VVAIKCPHANA---SKHYVSNELRMLERF-GGKNFIIKYEGC  265 (728)
Q Consensus       195 ~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~-----~VAIK~i~~~~---~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~  265 (728)
                      ......++|.+.+.||+|+||.||+|.+..++.     .||+|++....   ....+.+|+.++..+ .|+| |++++++
T Consensus        40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~-iv~~~~~  118 (333)
T 2i1m_A           40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHEN-IVNLLGA  118 (333)
T ss_dssp             GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT-BCCEEEE
T ss_pred             cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCC-eeeEEEE
Confidence            344556899999999999999999999976654     89999987653   245688999999999 7888 9999999


Q ss_pred             EEeCCeeEEEEeccCCCChHHHhh-----------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee
Q 004835          266 FKCGDSDCFVLEHVKHDRPEVLKK-----------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS  328 (728)
Q Consensus       266 ~~~~~~~~LV~E~~~~~~l~~l~~-----------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld  328 (728)
                      +..++..|+||||+.++++..+..                 .+++..+..++.||+.||.|||++||+||||||+|||++
T Consensus       119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~  198 (333)
T 2i1m_A          119 CTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLT  198 (333)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEE
T ss_pred             EecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEEC
Confidence            999999999999999988766542                 268889999999999999999999999999999999999


Q ss_pred             cCCCceEEEeeecccc
Q 004835          329 CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       329 ~~~~~~kL~DFGlA~~  344 (728)
                       .++.+||+|||++..
T Consensus       199 -~~~~~kl~Dfg~~~~  213 (333)
T 2i1m_A          199 -NGHVAKIGDFGLARD  213 (333)
T ss_dssp             -GGGEEEBCCCGGGCC
T ss_pred             -CCCeEEECccccccc
Confidence             667899999999974

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=2.1e-39  Score=361.73  Aligned_cols=139  Identities=24%  Similarity=0.214  Sum_probs=113.0

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhc-CCCCceEEecceEEeCCeeEEEEeccC
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      .|.+.+.||+|+||+||.+.. .+|+.||||++.... ...+.+|+.++.++ +|+| |+++++++..+...|+||||+.
T Consensus        16 ~~~~~~~LG~G~~g~V~~~~~-~~g~~vAvK~~~~~~-~~~~~~E~~~l~~l~~Hpn-Iv~~~~~~~~~~~~~lv~E~~~   92 (434)
T 2rio_A           16 LVVSEKILGYGSSGTVVFQGS-FQGRPVAVKRMLIDF-CDIALMEIKLLTESDDHPN-VIRYYCSETTDRFLYIALELCN   92 (434)
T ss_dssp             CEEEEEEEEECSTTCEEEEEE-SSSSEEEEEEEEGGG-HHHHHHHHHHHHHHTTSTT-BCCEEEEEECSSEEEEEECCCS
T ss_pred             eeeccCeEeeCCCeEEEEEEE-ECCeEEEEEEEcHHH-HHHHHHHHHHHHhccCCCC-cCeEEEEEecCCeEEEEEecCC
Confidence            466678899999999987644 579999999886543 34577899999886 7888 9999999999999999999998


Q ss_pred             CCChHHHhhc---C-------ChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC------------CCceEEEe
Q 004835          281 HDRPEVLKKE---I-------DLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK------------AVKGYLID  338 (728)
Q Consensus       281 ~~~l~~l~~~---l-------~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~------------~~~~kL~D  338 (728)
                      + ++..+...   .       .+..+..++.||+.||.|||++||+||||||+||||+..            ...+||+|
T Consensus        93 g-sL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~D  171 (434)
T 2rio_A           93 L-NLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISD  171 (434)
T ss_dssp             E-EHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECC
T ss_pred             C-CHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcc
Confidence            6 55544432   1       223456799999999999999999999999999999732            34799999


Q ss_pred             eecccc
Q 004835          339 FNLAMV  344 (728)
Q Consensus       339 FGlA~~  344 (728)
                      ||++..
T Consensus       172 FG~a~~  177 (434)
T 2rio_A          172 FGLCKK  177 (434)
T ss_dssp             CTTCEE
T ss_pred             ccccee
Confidence            999975

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=3.3e-39  Score=344.51  Aligned_cols=144  Identities=24%  Similarity=0.339  Sum_probs=126.9

Q ss_pred             CCCCeeEEEEecccCceEEEEEEE----cCCCeEEEEEeccCcCc--hhHHHHHHHHHHhcCCCCceEEecceEE--eCC
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARR----KNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEGCFK--CGD  270 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~----~~~g~~VAIK~i~~~~~--~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~--~~~  270 (728)
                      ..++|++.+.||+|+||.||+|++    ..+++.||||++.....  ...+.+|+.++.+++|+| |+++++++.  ...
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~   99 (327)
T 3lxl_A           21 EERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDF-IVKYRGVSYGPGRQ   99 (327)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSSC
T ss_pred             chhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCc-eeEEEEEEecCCCc
Confidence            446899999999999999999994    56889999999876532  345889999999999998 999998876  456


Q ss_pred             eeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          271 SDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..|+||||+.++++..+..    .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||++..
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~-~~~~~kl~Dfg~~~~  176 (327)
T 3lxl_A          100 SLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVE-SEAHVKIADFGLAKL  176 (327)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEE-ETTEEEECCGGGCEE
T ss_pred             eEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEEC-CCCCEEEccccccee
Confidence            7899999999988877653    389999999999999999999999999999999999999 667899999999975

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=5.4e-39  Score=363.98  Aligned_cols=143  Identities=24%  Similarity=0.364  Sum_probs=128.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      ++|++.++||+|+||.||+|++..+++.||||++........+.+|+.++..+.|+++|..+..++...+..||||||+ 
T Consensus         7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-   85 (483)
T 3sv0_A            7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-   85 (483)
T ss_dssp             TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-
T ss_pred             CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-
Confidence            6899999999999999999999999999999998776666678899999999999888888888888899999999999 


Q ss_pred             CCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEee--cCCCceEEEeeecccc
Q 004835          281 HDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS--CKAVKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld--~~~~~~kL~DFGlA~~  344 (728)
                      ++.|..+..    .+++..++.|+.||+.||.|||++|||||||||+||||+  ..++.+||+|||+++.
T Consensus        86 g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~  155 (483)
T 3sv0_A           86 GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKK  155 (483)
T ss_dssp             CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred             CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCccee
Confidence            666655543    489999999999999999999999999999999999994  2567899999999975

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=7.4e-39  Score=333.82  Aligned_cols=145  Identities=21%  Similarity=0.270  Sum_probs=125.2

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcC---CCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKN---DGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~---~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      ....++|.+.+.||+|+||.||+|++..   ++..||+|++....   ....+.+|+.++..++|+| |+++++++.. +
T Consensus         8 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~-~   85 (281)
T 3cc6_A            8 GIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPH-IVKLIGIIEE-E   85 (281)
T ss_dssp             SCCGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTT-BCCEEEEECS-S
T ss_pred             eecccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCC-cceEEEEEcC-C
Confidence            3456789999999999999999999753   34579999987643   3456889999999999999 9999998864 5


Q ss_pred             eeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          271 SDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..|+||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus        86 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~-~~~~~kl~Dfg~~~~  162 (281)
T 3cc6_A           86 PTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVA-SPECVKLGDFGLSRY  162 (281)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEE-ETTEEEECCCCGGGC
T ss_pred             CCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEC-CCCcEEeCccCCCcc
Confidence            6799999999988877653    388999999999999999999999999999999999999 667899999999874

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=1.1e-38  Score=357.77  Aligned_cols=147  Identities=21%  Similarity=0.278  Sum_probs=129.9

Q ss_pred             cccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          194 AKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       194 ~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+....++|.+.+.||+|+||.||+|.+. ++..||||++... ...+.+.+|+.++++++|+| |+++++++. .+..
T Consensus       181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~l~~~~~-~~~~  257 (454)
T 1qcf_A          181 DAWEIPRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDK-LVKLHAVVT-KEPI  257 (454)
T ss_dssp             TCSBCCGGGEEEEEEEECCSSEEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTT-BCCEEEEEC-SSSC
T ss_pred             cceeechHHeEEEEEcccCCceEEEEEEEC-CccEEEEEEecCCCccHHHHHHHHHHHhhCCCCC-EeeEEEEEe-CCcc
Confidence            344556789999999999999999999995 5788999998754 34567899999999999999 999999886 6778


Q ss_pred             EEEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||+.++++..+.+     .+++..+..++.||+.||+|||++||+||||||+||||+ .++.+||+|||+++.
T Consensus       258 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~-~~~~~kl~DFG~a~~  333 (454)
T 1qcf_A          258 YIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVS-ASLVCKIADFGLARV  333 (454)
T ss_dssp             EEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEEC-TTCCEEECSTTGGGG
T ss_pred             EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEC-CCCcEEEeeCCCceE
Confidence            99999999988877653     488899999999999999999999999999999999999 667899999999975

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=2.4e-39  Score=354.39  Aligned_cols=144  Identities=23%  Similarity=0.320  Sum_probs=123.7

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEc---CCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRK---NDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~---~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..++|.+.+.||+|+||.||+|++.   .++..||||++....   ....+.+|+.++.+++|+| |+++++++......
T Consensus        43 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~~  121 (373)
T 2qol_A           43 DATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPN-IIRLEGVVTKSKPV  121 (373)
T ss_dssp             CGGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTT-BCCEEEEECSSSSC
T ss_pred             CHhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEeeCCce
Confidence            4468999999999999999999986   457789999987543   2356889999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||++++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||+++.
T Consensus       122 ~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~-~~~~~kl~Dfg~a~~  196 (373)
T 2qol_A          122 MIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILIN-SNLVCKVSDFGLGRV  196 (373)
T ss_dssp             EEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTCCEEECCC-----
T ss_pred             EEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEc-CCCCEEECcCccccc
Confidence            99999999988887753    388999999999999999999999999999999999999 667899999999975

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.9e-39  Score=343.17  Aligned_cols=143  Identities=20%  Similarity=0.245  Sum_probs=121.8

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEE----EEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVV----AIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~V----AIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      ..++|++.+.||+|+||.||+|++..+++.|    |+|.+...   .....+.+|+.++..++|+| |+++++++..+. 
T Consensus        13 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~-   90 (327)
T 3lzb_A           13 KETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH-VCRLLGICLTST-   90 (327)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTT-BCCCCEEEESSS-
T ss_pred             CHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCC-eeEEEEEEecCC-
Confidence            3468999999999999999999998888754    66766432   34567889999999999999 999999998654 


Q ss_pred             eEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .++|+||+.++.+..+..    .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||++..
T Consensus        91 ~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~-~~~~~kL~DfG~a~~  166 (327)
T 3lzb_A           91 VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVK-TPQHVKITDFGLAKL  166 (327)
T ss_dssp             EEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEE-ETTEEEECCTTC---
T ss_pred             ceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEc-CCCCEEEccCcceeE
Confidence            789999999988776653    388999999999999999999999999999999999998 667899999999975

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=6.3e-39  Score=337.01  Aligned_cols=143  Identities=22%  Similarity=0.303  Sum_probs=125.3

Q ss_pred             CCCeeEEEEecccCceEEEEEE----EcCCCeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeC--C
Q 004835          200 FESFIVEEEEGSGGYGTVYRAR----RKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCG--D  270 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~----~~~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~--~  270 (728)
                      ...|++.+.||+|+||.||+|+    ...+++.||||++...   .....+.+|+.++..++|+| |+++++++...  .
T Consensus        20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~   98 (302)
T 4e5w_A           20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHEN-IVKYKGICTEDGGN   98 (302)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTT-BCCEEEEEEC---C
T ss_pred             hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCC-eeeeeeEEecCCCc
Confidence            3569999999999999999999    4568999999998743   23467889999999999999 99999998876  6


Q ss_pred             eeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          271 SDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..|+||||+.++++..+..    .+++..+..++.||+.||+|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        99 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~-~~~~~kl~Dfg~~~~  175 (302)
T 4e5w_A           99 GIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVE-SEHQVKIGDFGLTKA  175 (302)
T ss_dssp             CEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEE-ETTEEEECCCTTCEE
T ss_pred             eEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEc-CCCCEEECccccccc
Confidence            7899999999988877652    389999999999999999999999999999999999998 567899999999975

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=9.7e-39  Score=338.06  Aligned_cols=147  Identities=20%  Similarity=0.257  Sum_probs=121.9

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcC---CCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEe
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKN---DGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKC  268 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~---~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~  268 (728)
                      +....++|.+.+.||+|+||.||+|.+..   ++..||||++....    ....+.+|+.++.+++|+| |+++++++..
T Consensus        29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~~  107 (313)
T 3brb_A           29 VVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPN-VIRLLGVCIE  107 (313)
T ss_dssp             TBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTT-BCCCCEEEEC
T ss_pred             cccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCC-eeeeeEEEee
Confidence            34456789999999999999999998865   45689999987542    2345789999999999999 9999999876


Q ss_pred             CC-----eeEEEEeccCCCChHHHh---------hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCce
Q 004835          269 GD-----SDCFVLEHVKHDRPEVLK---------KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKG  334 (728)
Q Consensus       269 ~~-----~~~LV~E~~~~~~l~~l~---------~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~  334 (728)
                      ..     ..|+||||+.++.+..+.         ..+++..++.++.||+.||.|||++||+||||||+|||++ .++.+
T Consensus       108 ~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~-~~~~~  186 (313)
T 3brb_A          108 MSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLR-DDMTV  186 (313)
T ss_dssp             -------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEEC-TTSCE
T ss_pred             ccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEc-CCCcE
Confidence            54     459999999998887765         2388999999999999999999999999999999999999 66789


Q ss_pred             EEEeeecccc
Q 004835          335 YLIDFNLAMV  344 (728)
Q Consensus       335 kL~DFGlA~~  344 (728)
                      ||+|||++..
T Consensus       187 kl~Dfg~~~~  196 (313)
T 3brb_A          187 CVADFGLSKK  196 (313)
T ss_dssp             EECSCSCC--
T ss_pred             EEeecCccee
Confidence            9999999874

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1.6e-38  Score=336.04  Aligned_cols=145  Identities=27%  Similarity=0.348  Sum_probs=124.4

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+++|++.+.||+|+||.||+|.+..+|+.||||++...     .....+.+|+.++.+++|+| |+++++++...+..
T Consensus        29 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~  107 (310)
T 2wqm_A           29 NTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPN-VIKYYASFIEDNEL  107 (310)
T ss_dssp             SSGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEEEETTEE
T ss_pred             ccccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEEcCCcE
Confidence            3567899999999999999999999999999999998742     12356789999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++||||+.++++..+..       .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus       108 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~-~~~~~kl~Dfg~~~~  185 (310)
T 2wqm_A          108 NIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFIT-ATGVVKLGDLGLGRF  185 (310)
T ss_dssp             EEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTSCEEECCC-----
T ss_pred             EEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEc-CCCCEEEEeccceee
Confidence            99999999988876653       288999999999999999999999999999999999999 667899999999864

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=4.8e-39  Score=339.60  Aligned_cols=146  Identities=21%  Similarity=0.285  Sum_probs=124.9

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEE-----cCCCeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecceEE
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARR-----KNDGTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGCFK  267 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~-----~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~  267 (728)
                      ....++|.+.+.||+|+||.||+|++     ..+++.||||++.....   ...+.+|+.++.++ +|+| |+++++++.
T Consensus        23 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~-iv~~~~~~~  101 (316)
T 2xir_A           23 EFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN-VVNLLGACT  101 (316)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEC
T ss_pred             ecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCC-eeeEEEEEe
Confidence            34457999999999999999999985     34678999999876433   34578999999999 4666 999999987


Q ss_pred             eCC-eeEEEEeccCCCChHHHhhc-------------------CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEe
Q 004835          268 CGD-SDCFVLEHVKHDRPEVLKKE-------------------IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLF  327 (728)
Q Consensus       268 ~~~-~~~LV~E~~~~~~l~~l~~~-------------------l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILl  327 (728)
                      ..+ ..|+||||+.++++..+...                   +++..+..++.||+.||.|||++||+||||||+|||+
T Consensus       102 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~  181 (316)
T 2xir_A          102 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILL  181 (316)
T ss_dssp             CTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEE
T ss_pred             cCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEE
Confidence            654 58999999999888776532                   6788999999999999999999999999999999999


Q ss_pred             ecCCCceEEEeeecccc
Q 004835          328 SCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       328 d~~~~~~kL~DFGlA~~  344 (728)
                      + .++.+||+|||++..
T Consensus       182 ~-~~~~~kl~Dfg~~~~  197 (316)
T 2xir_A          182 S-EKNVVKICDFGLARD  197 (316)
T ss_dssp             C-GGGCEEECCCGGGSC
T ss_pred             C-CCCCEEECCCccccc
Confidence            8 667799999999974

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.5e-38  Score=333.61  Aligned_cols=140  Identities=22%  Similarity=0.263  Sum_probs=121.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHh--cCCCCceEEecceEEe----CCeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLER--FGGKNFIIKYEGCFKC----GDSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~--L~h~n~Ivkl~~~~~~----~~~~~  273 (728)
                      .++|++.+.||+|+||+||+|++  +|+.||||++.... ...+.+|.+++..  ++|+| |+++++++..    ....|
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~-~~~~~~e~~~~~~~~l~h~n-iv~~~~~~~~~~~~~~~~~   82 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSRD-EKSWFRETELYNTVMLRHEN-ILGFIASDMTSRHSSTQLW   82 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGGG-HHHHHHHHHHHHHTCCCCTT-BCCEEEEEEEEETTEEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEecccc-chhhHHHHHHHHHhhccCcC-eeeEEEeeccccCCCceeE
Confidence            46899999999999999999998  69999999986543 3445567777776  78999 9999888654    35689


Q ss_pred             EEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHH--------hCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          274 FVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLH--------KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLH--------s~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      +||||+.++++..+.+  .+++..+..++.||+.||.|||        ++||+||||||+|||++ .++.+||+|||++.
T Consensus        83 lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~-~~~~~kl~Dfg~a~  161 (301)
T 3q4u_A           83 LITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVK-KNGQCCIADLGLAV  161 (301)
T ss_dssp             EEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEEC-TTSCEEECCCTTCE
T ss_pred             EehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEc-CCCCEEEeeCCCee
Confidence            9999999998887764  3899999999999999999999        99999999999999999 66789999999997


Q ss_pred             c
Q 004835          344 V  344 (728)
Q Consensus       344 ~  344 (728)
                      .
T Consensus       162 ~  162 (301)
T 3q4u_A          162 M  162 (301)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.4e-39  Score=341.36  Aligned_cols=149  Identities=25%  Similarity=0.290  Sum_probs=126.4

Q ss_pred             cccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcC-CCCceEEecceEE---
Q 004835          194 AKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFG-GKNFIIKYEGCFK---  267 (728)
Q Consensus       194 ~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~---  267 (728)
                      ..+...-.+|++.+.||+|+||.||+|++..+|+.||||++....  ....+.+|+.++.++. |+| |+++++++.   
T Consensus        21 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~-iv~~~~~~~~~~   99 (337)
T 3ll6_A           21 QTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPN-IVQFCSAASIGK   99 (337)
T ss_dssp             CEEEETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTT-BCCEEEEEEECT
T ss_pred             ceeeccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCC-hhhccccccccc
Confidence            334444568999999999999999999999999999999885433  2456789999999996 888 999999884   


Q ss_pred             -----eCCeeEEEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCC--cEeccCCCCceEeecCCCceE
Q 004835          268 -----CGDSDCFVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQG--IVHRDVKPGNFLFSCKAVKGY  335 (728)
Q Consensus       268 -----~~~~~~LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~g--IIHRDIKPeNILld~~~~~~k  335 (728)
                           ....+++||||+.+++.+.+..     .+++..++.++.||+.||.|||++|  |+||||||+||||+ .++.+|
T Consensus       100 ~~~~~~~~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~-~~~~~k  178 (337)
T 3ll6_A          100 EESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLS-NQGTIK  178 (337)
T ss_dssp             TTSTTSSEEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEEC-TTSCEE
T ss_pred             cccccCCceEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEEC-CCCCEE
Confidence                 3345899999998765555432     3899999999999999999999999  99999999999999 667899


Q ss_pred             EEeeecccc
Q 004835          336 LIDFNLAMV  344 (728)
Q Consensus       336 L~DFGlA~~  344 (728)
                      |+|||++..
T Consensus       179 l~Dfg~~~~  187 (337)
T 3ll6_A          179 LCDFGSATT  187 (337)
T ss_dssp             BCCCTTCBC
T ss_pred             EecCcccee
Confidence            999999975

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=1.8e-38  Score=342.27  Aligned_cols=143  Identities=20%  Similarity=0.279  Sum_probs=117.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcC---CCeEEEEEeccCcCc-------------hhHHHHHHHHHHhcCCCCceEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKN---DGTVVAIKCPHANAS-------------KHYVSNELRMLERFGGKNFIIKYE  263 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~---~g~~VAIK~i~~~~~-------------~~~~~~Ei~iL~~L~h~n~Ivkl~  263 (728)
                      -++|.+.+.||+|+||.||+|++..   ++..||||++.....             ...+.+|+.++..+.|+| |++++
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~n-i~~~~  114 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLG-IPLFY  114 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCC-CCCEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccC-cceee
Confidence            3689999999999999999999987   788999999875421             223567888899999999 99999


Q ss_pred             ceEEe----CCeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCC-CceE
Q 004835          264 GCFKC----GDSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKA-VKGY  335 (728)
Q Consensus       264 ~~~~~----~~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~-~~~k  335 (728)
                      +++..    ....|+||||+ ++++..+..   .+++..++.++.||+.||.|||++||+||||||+||||+.++ ..+|
T Consensus       115 ~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~k  193 (345)
T 2v62_A          115 GSGLTEFKGRSYRFMVMERL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVY  193 (345)
T ss_dssp             EEEEEESSSCEEEEEEEECE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTTSEE
T ss_pred             cccccccCCCcEEEEEEecc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCCcEE
Confidence            99887    77899999999 777776654   489999999999999999999999999999999999998432 3899


Q ss_pred             EEeeecccc
Q 004835          336 LIDFNLAMV  344 (728)
Q Consensus       336 L~DFGlA~~  344 (728)
                      |+|||+++.
T Consensus       194 L~Dfg~a~~  202 (345)
T 2v62_A          194 LADYGLSYR  202 (345)
T ss_dssp             ECCCTTCEE
T ss_pred             EEeCCCcee
Confidence            999999975

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.9e-38  Score=338.34  Aligned_cols=145  Identities=23%  Similarity=0.284  Sum_probs=124.9

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCC----eEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDG----TVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g----~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      ...++|.+.+.||+|+||.||+|.+..++    ..||||++.....   ...+.+|+.++.++.|+| |+++++++...+
T Consensus        41 i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~  119 (333)
T 1mqb_A           41 IHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHN-IIRLEGVISKYK  119 (333)
T ss_dssp             CCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEECSSS
T ss_pred             CChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEecCC
Confidence            34568999999999999999999986543    4699999875432   345789999999999999 999999999999


Q ss_pred             eeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          271 SDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..|+||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus       120 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~-~~~~~kl~Dfg~~~~  196 (333)
T 1mqb_A          120 PMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVN-SNLVCKVSDFGLSRV  196 (333)
T ss_dssp             SEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTCCEEECCCCC---
T ss_pred             CcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEEC-CCCcEEECCCCcchh
Confidence            9999999999988877653    388999999999999999999999999999999999999 667899999999875

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.4e-38  Score=329.47  Aligned_cols=141  Identities=19%  Similarity=0.235  Sum_probs=122.8

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCe---EEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCee-EE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGT---VVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD-CF  274 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~---~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~-~L  274 (728)
                      .|.+.+.||+|+||+||+|++..++.   .||+|++.....   .+.+.+|+.+++.++|+| |+++++++...+.. ++
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~~~  100 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPN-VLALIGIMLPPEGLPHV  100 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTT-BCCCCEEECCSSSCCEE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCC-eeeEEEEEecCCCCcEE
Confidence            57888999999999999999765544   899999875433   356789999999999999 99999999866655 99


Q ss_pred             EEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus       101 v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~-~~~~~kl~Dfg~~~~  173 (298)
T 3pls_A          101 LLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLD-ESFTVKVADFGLARD  173 (298)
T ss_dssp             EECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC-TTCCEEECCTTSSCT
T ss_pred             EEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEc-CCCcEEeCcCCCccc
Confidence            999999888877653    378899999999999999999999999999999999998 667899999999974

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=2.4e-38  Score=343.79  Aligned_cols=144  Identities=17%  Similarity=0.274  Sum_probs=117.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCC-----CeEEEEEeccCcCc-------------hhHHHHHHHHHHhcCCCCceE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKND-----GTVVAIKCPHANAS-------------KHYVSNELRMLERFGGKNFII  260 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~-----g~~VAIK~i~~~~~-------------~~~~~~Ei~iL~~L~h~n~Iv  260 (728)
                      ..++|.+.+.||+|+||.||+|.+..+     ++.||||++.....             ...+..|+..+..+.|+| |+
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~-iv  111 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLG-VP  111 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCC-SC
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCC-CC
Confidence            346899999999999999999999764     58899999765431             112334555666777888 99


Q ss_pred             EecceEEeC----CeeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec-CC
Q 004835          261 KYEGCFKCG----DSDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC-KA  331 (728)
Q Consensus       261 kl~~~~~~~----~~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~-~~  331 (728)
                      ++++++...    ...|+||||+ ++++..+..    .+++..++.|+.||+.||.|||++||+||||||+||||+. .+
T Consensus       112 ~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~  190 (364)
T 3op5_A          112 KYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNP  190 (364)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCT
T ss_pred             eEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCC
Confidence            999998764    4589999999 777766542    3899999999999999999999999999999999999982 35


Q ss_pred             CceEEEeeecccc
Q 004835          332 VKGYLIDFNLAMV  344 (728)
Q Consensus       332 ~~~kL~DFGlA~~  344 (728)
                      +.+||+|||+++.
T Consensus       191 ~~~kl~DFG~a~~  203 (364)
T 3op5_A          191 DQVYLVDYGLAYR  203 (364)
T ss_dssp             TCEEECCCTTCEE
T ss_pred             CeEEEEECCccee
Confidence            6799999999975

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=4.8e-39  Score=343.37  Aligned_cols=143  Identities=23%  Similarity=0.250  Sum_probs=118.5

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHH--HHhcCCCCceEEecceEEe-----C
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRM--LERFGGKNFIIKYEGCFKC-----G  269 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~i--L~~L~h~n~Ivkl~~~~~~-----~  269 (728)
                      ...+++|++.+.||+|+||.||+|++  +++.||||++..... ..+..|..+  +..+.|+| |+++++.+..     .
T Consensus         9 ~~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~-~~~~~e~~~~~~~~~~h~~-i~~~~~~~~~~~~~~~   84 (336)
T 3g2f_A            9 SLDLDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFANR-QNFINEKNIYRVPLMEHDN-IARFIVGDERVTADGR   84 (336)
T ss_dssp             CCCTTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGGH-HHHHHHHHHHTSTTCCCTT-BCCEEEEEEEECTTSC
T ss_pred             CcChHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccch-hhHHHHHHHHHHHhccCcc-hhhheecccccccCCC
Confidence            34678999999999999999999987  689999999865432 233344444  45589999 8888875432     2


Q ss_pred             CeeEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhC---------CcEeccCCCCceEeecCCCceEEEe
Q 004835          270 DSDCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQ---------GIVHRDVKPGNFLFSCKAVKGYLID  338 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~---------gIIHRDIKPeNILld~~~~~~kL~D  338 (728)
                      ..+|+||||+++++|..+..  ..++..+..++.||+.||.|||++         ||+||||||+||||+ .++.+||+|
T Consensus        85 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~-~~~~~kL~D  163 (336)
T 3g2f_A           85 MEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVK-NDGTCVISD  163 (336)
T ss_dssp             EEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEEC-TTSCEEECC
T ss_pred             ceEEEEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEc-CCCcEEEee
Confidence            36799999999988877764  378889999999999999999999         999999999999999 667899999


Q ss_pred             eecccc
Q 004835          339 FNLAMV  344 (728)
Q Consensus       339 FGlA~~  344 (728)
                      ||++..
T Consensus       164 FG~a~~  169 (336)
T 3g2f_A          164 FGLSMR  169 (336)
T ss_dssp             CTTCEE
T ss_pred             ccceee
Confidence            999975

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=2.7e-38  Score=331.62  Aligned_cols=140  Identities=24%  Similarity=0.297  Sum_probs=117.8

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      .-++|++.+.||+|+||+||+|++.   ..||||++....    ....+.+|+.++++++|+| |+++++++ .....++
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~~~~~---~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~-~~~~~~l   96 (289)
T 3og7_A           22 PDGQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN-ILLFMGYS-TAPQLAI   96 (289)
T ss_dssp             CTTSCEEEEEEEECSSEEEEEEESS---SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTT-BCCEEEEE-CSSSCEE
T ss_pred             CccceeeeeEecCCCCeEEEEEEEc---CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCc-EEEEEeec-cCCccEE
Confidence            3468999999999999999999874   359999987543    2356889999999999999 88888854 5667899


Q ss_pred             EEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus        97 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~-~~~~~kl~Dfg~~~~  169 (289)
T 3og7_A           97 VTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLH-EDNTVKIGDFGLATE  169 (289)
T ss_dssp             EEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEE-TTTEEEECCCC----
T ss_pred             EEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEEC-CCCCEEEccceeccc
Confidence            999999988876652    388999999999999999999999999999999999999 667899999999864

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=5.1e-38  Score=352.35  Aligned_cols=146  Identities=21%  Similarity=0.247  Sum_probs=127.8

Q ss_pred             ccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          195 KVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       195 ~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+....++|++.+.||+|+||.||+|.+. .+..||||++.... ..+.+.+|+.++++++|+| |+++++++.. +..|
T Consensus       178 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~-~~~~  254 (452)
T 1fmk_A          178 AWEIPRESLRLEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK-LVQLYAVVSE-EPIY  254 (452)
T ss_dssp             CSBCCGGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTT-BCCEEEEECS-SSCE
T ss_pred             ccccChhHceeeeeecCCCCeEEEEEEEC-CCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCC-EeeEEEEEcC-CceE
Confidence            34455678999999999999999999996 45779999987543 4567899999999999999 9999998865 7789


Q ss_pred             EEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+.++++..+..     .+++..+..++.||+.||+|||++||+||||||+|||++ .++.+||+|||+++.
T Consensus       255 iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~-~~~~~kl~DfG~a~~  329 (452)
T 1fmk_A          255 IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVG-ENLVCKVADFGLARL  329 (452)
T ss_dssp             EEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC-GGGCEEECCCCTTC-
T ss_pred             EEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEC-CCCCEEECCCcccee
Confidence            9999999988877653     288999999999999999999999999999999999998 667899999999975

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-38  Score=341.28  Aligned_cols=139  Identities=15%  Similarity=0.148  Sum_probs=118.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcC--------CCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEE----------
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKN--------DGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIK----------  261 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~--------~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivk----------  261 (728)
                      -++|.+.+.||+|+||.||+|++..        .++.||||++...   ..+.+|+.++.++.|+| |++          
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~---~~~~~E~~~l~~l~h~n-iv~~~~~~~~~~~  116 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD---GRLFNEQNFFQRAAKPL-QVNKWKKLYSTPL  116 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT---STHHHHHHHHHHHCCHH-HHHHHHHHTTCTT
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc---chHHHHHHHHHHhcccc-hhhhhhhhccCCc
Confidence            4689999999999999999999987        4889999998754   45779999999999988 655          


Q ss_pred             -----ecceEEe-CCeeEEEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC
Q 004835          262 -----YEGCFKC-GDSDCFVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK  330 (728)
Q Consensus       262 -----l~~~~~~-~~~~~LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~  330 (728)
                           +++++.. +...|+||||+ +++|..+..     .+++..++.++.||+.||.|||++||+||||||+|||++ .
T Consensus       117 ~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~-~  194 (352)
T 2jii_A          117 LAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVD-P  194 (352)
T ss_dssp             CSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEE-T
T ss_pred             cCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEc-C
Confidence                 5666665 67899999999 777766542     389999999999999999999999999999999999999 5


Q ss_pred             CC--ceEEEeeecccc
Q 004835          331 AV--KGYLIDFNLAMV  344 (728)
Q Consensus       331 ~~--~~kL~DFGlA~~  344 (728)
                      ++  .+||+|||+++.
T Consensus       195 ~~~~~~kl~Dfg~a~~  210 (352)
T 2jii_A          195 EDQSQVTLAGYGFAFR  210 (352)
T ss_dssp             TEEEEEEECCGGGCBC
T ss_pred             CCCceEEEecCcceee
Confidence            54  899999999975

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=5.3e-38  Score=329.70  Aligned_cols=143  Identities=20%  Similarity=0.268  Sum_probs=122.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCC---eEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceE-EeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDG---TVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCF-KCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g---~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~-~~~~~~  272 (728)
                      ...|++.+.||+|+||.||+|++..++   ..||+|.+.....   ...+.+|+.++++++|+| |+++++++ ...+..
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~  102 (298)
T 3f66_A           24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN-VLSLLGICLRSEGSP  102 (298)
T ss_dssp             GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTT-BCCCCEEECCSSSCC
T ss_pred             ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCC-EeeeeeEEEcCCCce
Confidence            347999999999999999999975433   4699999875433   356789999999999999 99999974 556788


Q ss_pred             EEEEeccCCCChHHHhhc----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~~----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||+.++++..+...    +++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus       103 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~-~~~~~kl~Dfg~a~~  177 (298)
T 3f66_A          103 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLD-EKFTVKVADFGLARD  177 (298)
T ss_dssp             EEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC-TTCCEEECSCGGGCC
T ss_pred             EEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEC-CCCCEEECccccccc
Confidence            999999999888777642    78899999999999999999999999999999999998 667899999999974

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=7.9e-39  Score=338.94  Aligned_cols=153  Identities=20%  Similarity=0.282  Sum_probs=129.7

Q ss_pred             cccccccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEE
Q 004835          190 DQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFK  267 (728)
Q Consensus       190 ~~~~~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~  267 (728)
                      .++...+....++|++.+.||+|+||.||+|++..+|+.||||++...  .....+.+|+.+++.+.|+| |+++++++.
T Consensus        18 ~~~g~~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~   96 (317)
T 2buj_A           18 YFQGHMVIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPN-ILRLVAYCL   96 (317)
T ss_dssp             SEEEEEEEETTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTT-BCCCCEEEE
T ss_pred             eecccEEEECCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCC-eeeEEEEEE
Confidence            334444555667899999999999999999999999999999987543  23456889999999999999 999999886


Q ss_pred             ----eCCeeEEEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEE
Q 004835          268 ----CGDSDCFVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYL  336 (728)
Q Consensus       268 ----~~~~~~LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL  336 (728)
                          .....|+||||+.++++..+..       .+++..++.++.||+.||.|||++||+||||||+|||++ .++.++|
T Consensus        97 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~-~~~~~kl  175 (317)
T 2buj_A           97 RERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLG-DEGQPVL  175 (317)
T ss_dssp             EEETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTSCEEE
T ss_pred             eccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEc-CCCCEEE
Confidence                2347899999999988876543       289999999999999999999999999999999999998 6678999


Q ss_pred             Eeeecccc
Q 004835          337 IDFNLAMV  344 (728)
Q Consensus       337 ~DFGlA~~  344 (728)
                      +|||++..
T Consensus       176 ~dfg~~~~  183 (317)
T 2buj_A          176 MDLGSMNQ  183 (317)
T ss_dssp             CCCSSCEE
T ss_pred             EecCcchh
Confidence            99999864

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=2.3e-39  Score=359.14  Aligned_cols=145  Identities=16%  Similarity=0.149  Sum_probs=110.5

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCce--------------
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFI--------------  259 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~I--------------  259 (728)
                      ....|.+.+.||+|+||+||+|++..+|+.||||++...     ...+.+.+|+.++..+.|..++              
T Consensus        76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~  155 (413)
T 3dzo_A           76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD  155 (413)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCE
T ss_pred             CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchh
Confidence            445699999999999999999999999999999998732     2245688999999999873211              


Q ss_pred             -EEe------cceEEe-----CCeeEEEEeccCCCChHHHh---------hcCChHHHHHHHHHHHHHHHHHHhCCcEec
Q 004835          260 -IKY------EGCFKC-----GDSDCFVLEHVKHDRPEVLK---------KEIDLSQLQWYGYCLFRALASLHKQGIVHR  318 (728)
Q Consensus       260 -vkl------~~~~~~-----~~~~~LV~E~~~~~~l~~l~---------~~l~~~~~~~i~~QIl~aL~yLHs~gIIHR  318 (728)
                       +.+      ..++..     ....+++|+++.+++.+.+.         ..+++..+..++.||+.||+|||++|||||
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHr  235 (413)
T 3dzo_A          156 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT  235 (413)
T ss_dssp             EEECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred             hcccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence             111      111111     23467888877765544441         226778889999999999999999999999


Q ss_pred             cCCCCceEeecCCCceEEEeeecccc
Q 004835          319 DVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       319 DIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+||||+ .++.+||+|||+++.
T Consensus       236 DiKp~NILl~-~~~~~kL~DFG~a~~  260 (413)
T 3dzo_A          236 YLRPVDIVLD-QRGGVFLTGFEHLVR  260 (413)
T ss_dssp             CCCGGGEEEC-TTCCEEECCGGGCEE
T ss_pred             CcccceEEEe-cCCeEEEEeccceee
Confidence            9999999999 666799999999874

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.3e-38  Score=333.54  Aligned_cols=140  Identities=21%  Similarity=0.295  Sum_probs=120.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhc--CCCCceEEecceEEeC----CeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF--GGKNFIIKYEGCFKCG----DSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L--~h~n~Ivkl~~~~~~~----~~~~  273 (728)
                      .++|++.+.||+|+||.||+|++.  |+.||||++..... ....+|.+++..+  .|+| |+++++++...    ...|
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~-~~~~~e~~~~~~~~~~h~~-i~~~~~~~~~~~~~~~~~~  111 (337)
T 3mdy_A           36 AKQIQMVKQIGKGRYGEVWMGKWR--GEKVAVKVFFTTEE-ASWFRETEIYQTVLMRHEN-ILGFIAADIKGTGSWTQLY  111 (337)
T ss_dssp             HHHCEEEEEEEEETTEEEEEEEET--TEEEEEEEEEGGGH-HHHHHHHHHHTSTTCCCTT-BCCEEEEEEESCGGGCEEE
T ss_pred             ccceEEEeEeecCCCeEEEEEEEC--CceEEEEEEecccc-chhhhHHHHHHHHhhcCCC-eeeEEEEEccCCCCCCceE
Confidence            358999999999999999999984  89999999865432 3344566665554  8998 99999999877    7899


Q ss_pred             EEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhC--------CcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          274 FVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQ--------GIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~--------gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      +||||+.++++..+.+  .+++..+..++.|++.||.|||++        ||+||||||+||||+ .++.+||+|||++.
T Consensus       112 lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~-~~~~~kl~Dfg~a~  190 (337)
T 3mdy_A          112 LITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVK-KNGTCCIADLGLAV  190 (337)
T ss_dssp             EEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEEC-TTSCEEECCCTTCE
T ss_pred             EEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEEC-CCCCEEEEeCCCce
Confidence            9999999988877764  389999999999999999999998        999999999999999 66789999999997


Q ss_pred             c
Q 004835          344 V  344 (728)
Q Consensus       344 ~  344 (728)
                      .
T Consensus       191 ~  191 (337)
T 3mdy_A          191 K  191 (337)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=2.9e-38  Score=329.76  Aligned_cols=144  Identities=20%  Similarity=0.270  Sum_probs=117.4

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcC-CC--eEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeC
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKN-DG--TVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~-~g--~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      ...++|++.+.||+|+||+||+|++.. ++  ..||||++...     ...+.+.+|+.++.+++|+| |+++++++...
T Consensus        15 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-i~~~~~~~~~~   93 (291)
T 1u46_A           15 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN-LIRLYGVVLTP   93 (291)
T ss_dssp             CCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTT-BCCEEEEECSS
T ss_pred             cchhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCC-cccEEEEEccC
Confidence            345789999999999999999998743 33  36999998743     22456789999999999999 99999998865


Q ss_pred             CeeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          270 DSDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      . .++||||+.++.+..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus        94 ~-~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~-~~~~~kl~Dfg~~~~  170 (291)
T 1u46_A           94 P-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLA-TRDLVKIGDFGLMRA  170 (291)
T ss_dssp             S-CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEE-ETTEEEECCCTTCEE
T ss_pred             C-ceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEc-CCCCEEEcccccccc
Confidence            4 899999999888766542    389999999999999999999999999999999999998 667899999999875

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=1.2e-39  Score=349.63  Aligned_cols=143  Identities=22%  Similarity=0.246  Sum_probs=116.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----------hhHHHHHHHHHHhcC---------CCC---
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----------KHYVSNELRMLERFG---------GKN---  257 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----------~~~~~~Ei~iL~~L~---------h~n---  257 (728)
                      .++|++.+.||+|+||+||+|++  +|+.||||++.....          ...+.+|+.+++.++         |+|   
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~   96 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG   96 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred             cccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence            46899999999999999999998  689999999875422          267889999999886         554   


Q ss_pred             -------------ceEEecceEEe-------------CCeeEEEEeccCCC-ChHHHhh-cCChHHHHHHHHHHHHHHHH
Q 004835          258 -------------FIIKYEGCFKC-------------GDSDCFVLEHVKHD-RPEVLKK-EIDLSQLQWYGYCLFRALAS  309 (728)
Q Consensus       258 -------------~Ivkl~~~~~~-------------~~~~~LV~E~~~~~-~l~~l~~-~l~~~~~~~i~~QIl~aL~y  309 (728)
                                   +|++++++|..             ....|+||||+.++ ++..+.+ .+++..++.|+.||+.||.|
T Consensus        97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~  176 (336)
T 2vuw_A           97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAV  176 (336)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence                         14444444443             68899999999887 5555543 48999999999999999999


Q ss_pred             HH-hCCcEeccCCCCceEeecCC-------------------CceEEEeeecccc
Q 004835          310 LH-KQGIVHRDVKPGNFLFSCKA-------------------VKGYLIDFNLAMV  344 (728)
Q Consensus       310 LH-s~gIIHRDIKPeNILld~~~-------------------~~~kL~DFGlA~~  344 (728)
                      || ++||+||||||+||||+.++                   ..+||+|||+|+.
T Consensus       177 lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~  231 (336)
T 2vuw_A          177 AEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRL  231 (336)
T ss_dssp             HHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBE
T ss_pred             HHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEe
Confidence            99 99999999999999999543                   2788999998864

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=8.7e-38  Score=329.73  Aligned_cols=142  Identities=20%  Similarity=0.202  Sum_probs=123.2

Q ss_pred             CCCCeeEE-EEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHH-HhcCCCCceEEecceEEe----CCee
Q 004835          199 NFESFIVE-EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRML-ERFGGKNFIIKYEGCFKC----GDSD  272 (728)
Q Consensus       199 ~~~~y~i~-~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL-~~L~h~n~Ivkl~~~~~~----~~~~  272 (728)
                      .+++|.+. +.||+|+||.||+|.+..+++.||||++..   ...+.+|+.++ +.+.|+| |+++++++..    ....
T Consensus        15 ~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~---~~~~~~e~~~~~~~~~h~~-i~~~~~~~~~~~~~~~~~   90 (299)
T 3m2w_A           15 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---CPKARREVELHWRASQCPH-IVRIVDVYENLYAGRKCL   90 (299)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC---SHHHHHHHHHHHHHTTSTT-BCCEEEEEEEEETTEEEE
T ss_pred             cccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc---cHHHHHHHHHHHHhccCCC-chhHHhhhhhhcCCCceE
Confidence            35789998 789999999999999999999999999864   34567899888 5567777 9999999887    6789


Q ss_pred             EEEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~DFGlA~~  344 (728)
                      |+||||+.++++..+..     .+++..++.++.||+.||.|||++||+||||||+|||++..  ++.++|+|||++..
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  169 (299)
T 3m2w_A           91 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKE  169 (299)
T ss_dssp             EEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEeccccccc
Confidence            99999999988776653     38899999999999999999999999999999999999843  57799999999863

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=4.5e-38  Score=341.47  Aligned_cols=147  Identities=16%  Similarity=0.210  Sum_probs=126.2

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEE-----EcCCCeEEEEEeccCcCchhHHHHHHHHHHhcC---CCCceEEecceEE
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRAR-----RKNDGTVVAIKCPHANASKHYVSNELRMLERFG---GKNFIIKYEGCFK  267 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~-----~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~---h~n~Ivkl~~~~~  267 (728)
                      +....++|.+.+.||+|+||+||+|.     ...+++.||||++... ....+.+|+.++..+.   |++ |+.+++++.
T Consensus        60 ~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~e~~~~~~l~~~~~~~-iv~~~~~~~  137 (365)
T 3e7e_A           60 FQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA-NPWEFYIGTQLMERLKPSMQHM-FMKFYSAHL  137 (365)
T ss_dssp             EECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC-CHHHHHHHHHHHHHSCGGGGGG-BCCEEEEEE
T ss_pred             EEECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC-ChhHHHHHHHHHHHhhhhhhhh-hhhhheeee
Confidence            33455789999999999999999994     6678999999998754 3456778899988887   677 999999999


Q ss_pred             eCCeeEEEEeccCCCChHHHhh--------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC---------
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK--------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK---------  330 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~--------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~---------  330 (728)
                      ..+..|+||||+.+++|..+..        .+++..++.|+.||+.||+|||++|||||||||+||||+..         
T Consensus       138 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~  217 (365)
T 3e7e_A          138 FQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDD  217 (365)
T ss_dssp             CSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC-----
T ss_pred             cCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCcccccc
Confidence            9999999999999998877653        38999999999999999999999999999999999999841         


Q ss_pred             -CCceEEEeeecccc
Q 004835          331 -AVKGYLIDFNLAMV  344 (728)
Q Consensus       331 -~~~~kL~DFGlA~~  344 (728)
                       .+.+||+|||+|+.
T Consensus       218 ~~~~~kl~DFG~a~~  232 (365)
T 3e7e_A          218 LSAGLALIDLGQSID  232 (365)
T ss_dssp             -CTTEEECCCTTCEE
T ss_pred             ccCCEEEeeCchhhh
Confidence             67899999999974

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=2.4e-38  Score=337.27  Aligned_cols=141  Identities=28%  Similarity=0.354  Sum_probs=124.3

Q ss_pred             CeeEEEEecccCceEEEEEEEc----CCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEe--CCee
Q 004835          202 SFIVEEEEGSGGYGTVYRARRK----NDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKC--GDSD  272 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~----~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--~~~~  272 (728)
                      .|++++.||+|+||+||+|.+.    .+++.||||++.....   ...+.+|+.++++++|+| |+++++++..  ....
T Consensus        32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~~  110 (318)
T 3lxp_A           32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEH-IIKYKGCCEDAGAASL  110 (318)
T ss_dssp             GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEEETTTTEE
T ss_pred             HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcc-hhhEEEEEecCCCceE
Confidence            3599999999999999888653    4789999999976533   355889999999999999 9999999987  4678


Q ss_pred             EEEEeccCCCChHHHhhc--CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~~--l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||+.++++..+...  +++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus       111 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~-~~~~~kl~Dfg~a~~  183 (318)
T 3lxp_A          111 QLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLD-NDRLVKIGDFGLAKA  183 (318)
T ss_dssp             EEEECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTCCEEECCGGGCEE
T ss_pred             EEEEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEc-CCCCEEECCcccccc
Confidence            999999999888877654  89999999999999999999999999999999999999 667899999999975

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=7.7e-38  Score=358.50  Aligned_cols=147  Identities=21%  Similarity=0.245  Sum_probs=128.7

Q ss_pred             cccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          194 AKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       194 ~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+....++|++.+.||+|+||.||+|.+. .+..||||++.... ..+.+.+|+.+|++++|+| |+++++++.. +..
T Consensus       260 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn-iv~~~~~~~~-~~~  336 (535)
T 2h8h_A          260 DAWEIPRESLRLEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK-LVQLYAVVSE-EPI  336 (535)
T ss_dssp             TCSBCCGGGEEEEEEEEECSSEEEEEEEET-TTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTT-BCCEEEEECS-SSC
T ss_pred             cceecchhhhhhheecccCCCeEEEEEEEC-CCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCC-EeeEEEEEee-ccc
Confidence            344456678999999999999999999996 45779999987543 4567899999999999999 9999998865 678


Q ss_pred             EEEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||||+.+++|..+++     .+++..+..++.||+.||.|||++|||||||||+||||+ .++.+||+|||+++.
T Consensus       337 ~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~-~~~~~kl~DFG~a~~  412 (535)
T 2h8h_A          337 YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVG-ENLVCKVADFGLARL  412 (535)
T ss_dssp             EEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC-GGGCEEECCTTSTTT
T ss_pred             eEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEc-CCCcEEEccccccee
Confidence            99999999988876653     288999999999999999999999999999999999998 667899999999974

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=8.8e-39  Score=373.18  Aligned_cols=144  Identities=22%  Similarity=0.289  Sum_probs=123.0

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEe------CC
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKC------GD  270 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~------~~  270 (728)
                      +++|++.+.||+|+||.||+|.+..+|+.||||++.....   ...+.+|+.++.+++|+| |+++++++..      ++
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~Hpn-IV~l~~v~~~~~~~~~~~   91 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPN-VVSAREVPDGLQKLAPND   91 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTT-BCCEEECCTTTCCCCTTS
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCC-CCceeeeecccccccCCC
Confidence            4789999999999999999999999999999999875432   355788999999999999 9998888654      67


Q ss_pred             eeEEEEeccCCCChHHHhh------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC--ceEEEeeecc
Q 004835          271 SDCFVLEHVKHDRPEVLKK------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV--KGYLIDFNLA  342 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~--~~kL~DFGlA  342 (728)
                      ..|+||||+.++++..+..      .+++..++.++.||+.||.|||++||+||||||+|||++.++.  .++|+|||++
T Consensus        92 ~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a  171 (676)
T 3qa8_A           92 LPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYA  171 (676)
T ss_dssp             SCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCC
T ss_pred             eEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEcccccc
Confidence            7899999999988877654      3788999999999999999999999999999999999984432  4899999998


Q ss_pred             cc
Q 004835          343 MV  344 (728)
Q Consensus       343 ~~  344 (728)
                      ..
T Consensus       172 ~~  173 (676)
T 3qa8_A          172 KE  173 (676)
T ss_dssp             CB
T ss_pred             cc
Confidence            74

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.8e-37  Score=359.62  Aligned_cols=143  Identities=19%  Similarity=0.288  Sum_probs=124.8

Q ss_pred             CCCCeeEEE-EecccCceEEEEEEEc--CCCeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          199 NFESFIVEE-EEGSGGYGTVYRARRK--NDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       199 ~~~~y~i~~-~LG~G~fG~Vy~a~~~--~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..++|.+.+ .||+|+||.||+|.+.  .++..||||+++..   ...+.+.+|+.++.+++|+| |+++++++.. +..
T Consensus       333 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpn-iv~l~~~~~~-~~~  410 (613)
T 2ozo_A          333 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPY-IVRLIGVCQA-EAL  410 (613)
T ss_dssp             CTTSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTT-BCCEEEEEES-SSE
T ss_pred             cccceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCC-EeeEEEEecc-CCe
Confidence            345677777 8999999999999886  35678999998754   24567899999999999999 9999999875 569


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||+.++++..+..    .+++..+..++.||+.||.|||++|||||||||+||||+ .++.+||+|||+++.
T Consensus       411 ~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~-~~~~vkL~DFGla~~  485 (613)
T 2ozo_A          411 MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLV-NRHYAKISDFGLSKA  485 (613)
T ss_dssp             EEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEE-ETTEEEECCCSTTTT
T ss_pred             EEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEc-CCCcEEEeeccCccc
Confidence            99999999998877653    389999999999999999999999999999999999999 667899999999975

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.9e-38  Score=345.13  Aligned_cols=142  Identities=20%  Similarity=0.262  Sum_probs=118.3

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCC---eEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEE-eCCeeE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDG---TVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFK-CGDSDC  273 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g---~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~-~~~~~~  273 (728)
                      ..|.+.+.||+|+||.||+|.+..++   ..||+|.+....   ....+.+|+.++++++|+| |+++++++. ..+..|
T Consensus        89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~~~~~~~~~~~~~~  167 (373)
T 3c1x_A           89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN-VLSLLGICLRSEGSPL  167 (373)
T ss_dssp             EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTT-BCCCCEEECCCSSCCE
T ss_pred             ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCC-cceEEEEEEcCCCCeE
Confidence            46899999999999999999975432   468999986532   2456889999999999999 999999754 456889


Q ss_pred             EEEeccCCCChHHHhhc----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~~----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+.++++..+.+.    +++..+..++.||+.||.|||++||+||||||+||||+ .++.+||+|||+++.
T Consensus       168 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~-~~~~~kL~DFG~a~~  241 (373)
T 3c1x_A          168 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLD-EKFTVKVADFGLARD  241 (373)
T ss_dssp             EEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTCCEEECCC-----
T ss_pred             EEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEEC-CCCCEEEeecccccc
Confidence            99999999888877642    78889999999999999999999999999999999999 667899999999974

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=1.8e-37  Score=362.66  Aligned_cols=141  Identities=21%  Similarity=0.262  Sum_probs=121.6

Q ss_pred             CCeeEE-EEecccCceEEEEEEE--cCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          201 ESFIVE-EEEGSGGYGTVYRARR--KNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       201 ~~y~i~-~~LG~G~fG~Vy~a~~--~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..+.+. +.||+|+||.||+|.+  ..+++.||||+++...    ....+.+|+.++.+++|+| |+++++++. .+..+
T Consensus       368 ~~~~l~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~l~~~~~-~~~~~  445 (635)
T 4fl3_A          368 KLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPY-IVRMIGICE-AESWM  445 (635)
T ss_dssp             GGEEEEEEEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTT-BCCEEEEEE-SSSEE
T ss_pred             hhccccCCEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEe-cCCEE
Confidence            345554 4899999999999965  3567899999987532    2467889999999999999 999999886 45689


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+.++++..++.   .+++..+..|+.||+.||.|||++|||||||||+||||+ .++.+||+|||+|+.
T Consensus       446 lv~E~~~~g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~-~~~~~kL~DFGla~~  518 (635)
T 4fl3_A          446 LVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLV-TQHYAKISDFGLSKA  518 (635)
T ss_dssp             EEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEE-ETTEEEECCTTHHHH
T ss_pred             EEEEccCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEe-CCCCEEEEEcCCccc
Confidence            9999999998877654   388999999999999999999999999999999999999 667899999999975

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=2.1e-38  Score=334.16  Aligned_cols=138  Identities=23%  Similarity=0.330  Sum_probs=122.2

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc------CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN------ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      |...+.||+|+||.||+|.+  +++.||||++...      .....+.+|+.++..++|+| |+++++++...+..|+||
T Consensus        33 ~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-i~~~~~~~~~~~~~~lv~  109 (307)
T 2nru_A           33 SVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN-LVELLGFSSDGDDLCLVY  109 (307)
T ss_dssp             TTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT-BCCEEEEECSSSSCEEEE
T ss_pred             cccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC-eEEEEEEEecCCceEEEE
Confidence            44557999999999999987  6889999998642      22456889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.++++..+..      .+++..+..++.||+.||.|||++||+||||||+|||++ .++.++|+|||++..
T Consensus       110 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~-~~~~~kl~Dfg~~~~  182 (307)
T 2nru_A          110 VYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLD-EAFTAKISDFGLARA  182 (307)
T ss_dssp             ECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEC-TTCCEEECCCTTCEE
T ss_pred             EecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEc-CCCcEEEeecccccc
Confidence            9999988876653      288999999999999999999999999999999999999 667899999999875

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=5.5e-38  Score=332.37  Aligned_cols=147  Identities=20%  Similarity=0.291  Sum_probs=126.4

Q ss_pred             cccccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEE
Q 004835          192 TNAKVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFK  267 (728)
Q Consensus       192 ~~~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~  267 (728)
                      .........++|++.+.||+|+||.||+|++..   .||+|++...    .....+.+|+.++.+++|+| |+++++++.
T Consensus        24 ~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~-iv~~~~~~~   99 (319)
T 2y4i_B           24 FLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHEN-VVLFMGACM   99 (319)
T ss_dssp             CGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTT-BCCCCEEEE
T ss_pred             ccccccCCHHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCC-EeEEEEEEe
Confidence            334555667899999999999999999999853   4999998643    22345678999999999999 999999999


Q ss_pred             eCCeeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                      .....++||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ + +.++|+|||++.
T Consensus       100 ~~~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~-~~~~l~Dfg~~~  177 (319)
T 2y4i_B          100 SPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-N-GKVVITDFGLFS  177 (319)
T ss_dssp             CSSCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC----CCEECCCSCCC
T ss_pred             cCCceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-C-CCEEEeecCCcc
Confidence            9999999999999988887764    388999999999999999999999999999999999997 3 579999999986


Q ss_pred             c
Q 004835          344 V  344 (728)
Q Consensus       344 ~  344 (728)
                      .
T Consensus       178 ~  178 (319)
T 2y4i_B          178 I  178 (319)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=4.1e-37  Score=328.84  Aligned_cols=139  Identities=22%  Similarity=0.312  Sum_probs=123.7

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHh--cCCCCceEEecceEEeCC----eeEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLER--FGGKNFIIKYEGCFKCGD----SDCF  274 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~--L~h~n~Ivkl~~~~~~~~----~~~L  274 (728)
                      ++|.+.+.||+|+||.||+|++  +|+.||||++.... ...+.+|+.++..  +.|+| |+++++++....    ..|+
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~-~~~~~~e~~~~~~~~l~h~n-i~~~~~~~~~~~~~~~~~~l  117 (342)
T 1b6c_B           42 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHEN-ILGFIAADNKDNGTWTQLWL  117 (342)
T ss_dssp             HHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECGGG-HHHHHHHHHHHHHSCCCCTT-BCCEEEEEECCCSSCCCEEE
T ss_pred             ccEEEEeeecCCCCcEEEEEEE--cCccEEEEEeCchh-HHHHHHHHHHHHHhhcCCCc-EEEEEeeecccCCccceeEE
Confidence            5799999999999999999998  59999999986543 4456789999888  78998 999999998775    7899


Q ss_pred             EEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHH--------hCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLH--------KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLH--------s~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.++++..+..  .+++..+..++.||+.||.|||        ++||+||||||+||||+ .++.+||+|||++..
T Consensus       118 v~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~-~~~~~kL~Dfg~~~~  196 (342)
T 1b6c_B          118 VSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVK-KNGTCCIADLGLAVR  196 (342)
T ss_dssp             EECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEEC-TTSCEEECCCTTCEE
T ss_pred             EEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEEC-CCCCEEEEECCCcee
Confidence            999999988877764  3899999999999999999999        89999999999999999 667899999999975

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.3e-37  Score=329.28  Aligned_cols=143  Identities=23%  Similarity=0.329  Sum_probs=124.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEE----cCCCeEEEEEeccCcCc--hhHHHHHHHHHHhcCCCCceEEecceEEeCC--e
Q 004835          200 FESFIVEEEEGSGGYGTVYRARR----KNDGTVVAIKCPHANAS--KHYVSNELRMLERFGGKNFIIKYEGCFKCGD--S  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~----~~~g~~VAIK~i~~~~~--~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~--~  271 (728)
                      .++|++.+.||+|+||.||+|++    ..+|+.||||++.....  ...+.+|+.++.+++|+| |+++++++...+  .
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~-iv~~~~~~~~~~~~~  118 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN-IVKYKGVCYSAGRRN  118 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTT-BCCEEEEECC----C
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCC-eeeEEEEEEecCCCc
Confidence            45799999999999999999994    56799999999875433  356889999999999999 999999876543  7


Q ss_pred             eEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .++||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||++..
T Consensus       119 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~-~~~~~kL~Dfg~~~~  194 (326)
T 2w1i_A          119 LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVE-NENRVKIGDFGLTKV  194 (326)
T ss_dssp             CEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEE-ETTEEEECCCTTCEE
T ss_pred             eEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEc-CCCcEEEecCcchhh
Confidence            899999999988877653    388999999999999999999999999999999999999 667899999999975

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=3.8e-36  Score=352.66  Aligned_cols=145  Identities=26%  Similarity=0.293  Sum_probs=126.0

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCC---CeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKND---GTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~---g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      ....++|++.+.||+|+||.||+|.+..+   +..||||++.....   .+.+.+|+.++.+++|+| |+++++++. .+
T Consensus       386 ~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~Hpn-Iv~l~~~~~-~~  463 (656)
T 2j0j_A          386 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPH-IVKLIGVIT-EN  463 (656)
T ss_dssp             BCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEC-SS
T ss_pred             ccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEe-cC
Confidence            34457899999999999999999998643   46899999875432   356889999999999999 999999885 56


Q ss_pred             eeEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          271 SDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..|+||||+.++++..+..    .+++..+..++.||+.||.|||++||+||||||+|||++ .++.+||+|||+++.
T Consensus       464 ~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~-~~~~vkL~DFG~a~~  540 (656)
T 2j0j_A          464 PVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVS-SNDCVKLGDFGLSRY  540 (656)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEE-ETTEEEECCCCCCCS
T ss_pred             ceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEe-CCCCEEEEecCCCee
Confidence            7899999999998877654    378899999999999999999999999999999999999 667899999999974

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.3e-36  Score=357.69  Aligned_cols=141  Identities=23%  Similarity=0.302  Sum_probs=123.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcC-CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCe-----
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKN-DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS-----  271 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~-~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~-----  271 (728)
                      ++|++.+.||+|+||+||+|.+.. +|+.||||++.....   ...+.+|+.++.+++|+| |+++++++...+.     
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~-iv~~~~~~~~~~~~~~~~  158 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPS-IVQIFNFVEHTDRHGDPV  158 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTT-BCCEEEEEEEECTTSCEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCC-cCeEeeeEeecCCCCCce
Confidence            689999999999999999999976 789999999865432   345789999999999999 9999999987665     


Q ss_pred             eEEEEeccCCCChHHHh-hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLK-KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~-~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      .||||||++++++..+. ..+++..++.|+.||+.||.|||++|||||||||+||||+ .+ .+||+|||+++.
T Consensus       159 ~~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~-~~-~~kl~DFG~a~~  230 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLT-EE-QLKLIDLGAVSR  230 (681)
T ss_dssp             EEEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-SS-CEEECCCTTCEE
T ss_pred             eEEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEe-CC-cEEEEecccchh
Confidence            79999999988776654 4599999999999999999999999999999999999998 43 799999999864

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=5e-35  Score=308.54  Aligned_cols=135  Identities=11%  Similarity=-0.001  Sum_probs=119.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++.+.||+|+||.||+|++..+|+.||||++.....     ...+.+|+.++.++.|+| |+++++++...+..|+|
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~-iv~~~~~~~~~~~~~lv  109 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPG-VARVLDVVHTRAGGLVV  109 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEEEETTEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCC-cceeeEEEEECCcEEEE
Confidence            579999999999999999999999999999999975432     256889999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhhc-CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEE
Q 004835          276 LEHVKHDRPEVLKKE-IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLI  337 (728)
Q Consensus       276 ~E~~~~~~l~~l~~~-l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~  337 (728)
                      |||+.++++..+.+. ....++..|+.||+.||.|||++||+||||||+||||+ .++.+||+
T Consensus       110 ~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~-~~g~~kl~  171 (286)
T 3uqc_A          110 AEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVS-IDGDVVLA  171 (286)
T ss_dssp             EECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEE-TTSCEEEC
T ss_pred             EEecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEc-CCCCEEEE
Confidence            999999888776643 56677899999999999999999999999999999998 55556554

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.95  E-value=4.7e-30  Score=296.33  Aligned_cols=136  Identities=22%  Similarity=0.139  Sum_probs=106.0

Q ss_pred             EecccCceEEEEEEEcCCCeEEEEEeccCcC------------chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          208 EEGSGGYGTVYRARRKNDGTVVAIKCPHANA------------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~------------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ..+.|++|.+..++....|+.||+|++....            ..+.+.+|+.+|+++.++.+|++++++++++...|||
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV  320 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV  320 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence            3566777777777776789999999986431            2345889999999995444499999999999999999


Q ss_pred             EeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||++|++|..++.....-....|+.||+.||+|||++|||||||||+||||+ +++.+||+|||+|+.
T Consensus       321 MEyv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~-~dg~vKL~DFGlAr~  388 (569)
T 4azs_A          321 MEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKQGFWHDDVRPWNVMVD-ARQHARLIDFGSIVT  388 (569)
T ss_dssp             EECCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCEESCCCGGGEEEC-TTSCEEECCCTTEES
T ss_pred             EecCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHCCceeccCchHhEEEC-CCCCEEEeecccCee
Confidence            99999999988875422222346899999999999999999999999999999 667899999999974

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.89  E-value=2.4e-24  Score=247.12  Aligned_cols=130  Identities=22%  Similarity=0.224  Sum_probs=102.9

Q ss_pred             eEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----------chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          204 IVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       204 ~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ...+.||+|+||.||+|..  .++.+|+|+.....          ..+++.+|+.++++++|+| |+++..++...+..|
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~--~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~n-Iv~~~~~~~~~~~~~  415 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY--LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFG-IPAPYIFDVDLDNKR  415 (540)
T ss_dssp             ---------CCEEEEEEEC--SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGT-CCCCCEEEEETTTTE
T ss_pred             CCCCEEeeCCCEEEEEEEE--CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCC-cCceEEEEEeCCccE
Confidence            3467899999999999954  67889999754321          1234789999999999999 885555566778889


Q ss_pred             EEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||||+++++|..+...     +..++.||+.||.|||++||+||||||+|||++ .  .+||+|||+|+.
T Consensus       416 lVmE~~~ggsL~~~l~~-----~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~-~--~~kL~DFGla~~  478 (540)
T 3en9_A          416 IMMSYINGKLAKDVIED-----NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFD-K--DLYIIDFGLGKI  478 (540)
T ss_dssp             EEEECCCSEEHHHHSTT-----CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEES-S--SEEECCCTTCEE
T ss_pred             EEEECCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEEC-C--eEEEEECccCEE
Confidence            99999999888877665     678999999999999999999999999999998 4  899999999985

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.83  E-value=9.4e-21  Score=199.71  Aligned_cols=130  Identities=17%  Similarity=0.244  Sum_probs=107.0

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--------------------chhHHHHHHHHHHhcCCCCceEEe
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--------------------SKHYVSNELRMLERFGGKNFIIKY  262 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--------------------~~~~~~~Ei~iL~~L~h~n~Ivkl  262 (728)
                      |.+.+.||+|+||.||+|.+ .+|+.||||+++...                    ....+.+|+.++.++.|    +++
T Consensus        92 ~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~----~~v  166 (282)
T 1zar_A           92 DAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG----LAV  166 (282)
T ss_dssp             SEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT----SSS
T ss_pred             EEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC----CCc
Confidence            44559999999999999999 789999999986421                    13457899999999984    345


Q ss_pred             cceEEeCCeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecc
Q 004835          263 EGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       263 ~~~~~~~~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                      .+++.. +..|+||||++++++..+    .......++.||+.||.|||++||+||||||+||||+  ++.+||+|||+|
T Consensus       167 ~~~~~~-~~~~lvmE~~~g~~L~~l----~~~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~--~~~vkl~DFG~a  239 (282)
T 1zar_A          167 PKVYAW-EGNAVLMELIDAKELYRV----RVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS--EEGIWIIDFPQS  239 (282)
T ss_dssp             CCEEEE-ETTEEEEECCCCEEGGGC----CCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE--TTEEEECCCTTC
T ss_pred             CeEEec-cceEEEEEecCCCcHHHc----chhhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE--CCcEEEEECCCC
Confidence            555543 567999999999887652    3345668999999999999999999999999999999  567999999999


Q ss_pred             cc
Q 004835          343 MV  344 (728)
Q Consensus       343 ~~  344 (728)
                      +.
T Consensus       240 ~~  241 (282)
T 1zar_A          240 VE  241 (282)
T ss_dssp             EE
T ss_pred             eE
Confidence            85

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.81  E-value=6.2e-20  Score=190.53  Aligned_cols=136  Identities=19%  Similarity=0.217  Sum_probs=107.5

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeE--EEEEeccCcCc--------------------------hhHHHHHHHHHHhc
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTV--VAIKCPHANAS--------------------------KHYVSNELRMLERF  253 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~--VAIK~i~~~~~--------------------------~~~~~~Ei~iL~~L  253 (728)
                      -|.+.+.||+|+||.||+|.+..+|+.  ||||+++....                          ...+.+|+.+|.++
T Consensus        48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  127 (258)
T 1zth_A           48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA  127 (258)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999778999  99998653210                          12578899999999


Q ss_pred             CCCCc-eEEecceEEeCCeeEEEEeccCC-C----ChHHHhhcCChHHHHHHHHHHHHHHHHHH-hCCcEeccCCCCceE
Q 004835          254 GGKNF-IIKYEGCFKCGDSDCFVLEHVKH-D----RPEVLKKEIDLSQLQWYGYCLFRALASLH-KQGIVHRDVKPGNFL  326 (728)
Q Consensus       254 ~h~n~-Ivkl~~~~~~~~~~~LV~E~~~~-~----~l~~l~~~l~~~~~~~i~~QIl~aL~yLH-s~gIIHRDIKPeNIL  326 (728)
                      .|+++ ++.++.+    ...+|||||+++ +    .+..+....++..+..++.||+.||.||| +.|||||||||+|||
T Consensus       128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~givHrDlkp~NIL  203 (258)
T 1zth_A          128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIM  203 (258)
T ss_dssp             HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHTSCEECSSCSTTSEE
T ss_pred             HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEE
Confidence            88752 2333322    357999999953 3    45444333445678899999999999999 999999999999999


Q ss_pred             eecCCCceEEEeeecccc
Q 004835          327 FSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       327 ld~~~~~~kL~DFGlA~~  344 (728)
                      ++ +  .++|+|||+|..
T Consensus       204 l~-~--~~~liDFG~a~~  218 (258)
T 1zth_A          204 YI-D--KVYFIDMGQAVT  218 (258)
T ss_dssp             ES-S--SEEECCCTTCEE
T ss_pred             Ec-C--cEEEEECccccc
Confidence            98 4  799999999975

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.63  E-value=3.7e-16  Score=171.62  Aligned_cols=135  Identities=15%  Similarity=0.153  Sum_probs=99.1

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----------------ch--------hHHHHHHHHHHhcCCCC
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----------------SK--------HYVSNELRMLERFGGKN  257 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----------------~~--------~~~~~Ei~iL~~L~h~n  257 (728)
                      -|.+...||.|+||.||+|.+. +|+.||||+++...                ..        -...+|+..|.++.+..
T Consensus        96 iY~I~~~IG~Gk~a~VY~a~d~-~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g  174 (397)
T 4gyi_A           96 VYSVGSRIGVGKESDIMIVADE-KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG  174 (397)
T ss_dssp             CSEEEEEEEECSSEEEEEEECT-TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEecCEeeeCCceEEEEEECC-CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3899999999999999999985 79999999875310                00        01245777888875443


Q ss_pred             c-eEEecceEEeCCeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC----
Q 004835          258 F-IIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV----  332 (728)
Q Consensus       258 ~-Ivkl~~~~~~~~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~----  332 (728)
                      . +...+++    ...+|||||+++..+..+.   .......++.||+.+|.|||++|||||||||.|||++.++.    
T Consensus       175 v~vp~p~~~----~~~~LVME~i~G~~L~~l~---~~~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~d~  247 (397)
T 4gyi_A          175 FPVPEPIAQ----SRHTIVMSLVDALPMRQVS---SVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDP  247 (397)
T ss_dssp             CSCCCEEEE----ETTEEEEECCSCEEGGGCC---CCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSSCT
T ss_pred             CCCCeeeec----cCceEEEEecCCccHhhhc---ccHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCcccc
Confidence            1 1222221    2347999999987765432   23455678899999999999999999999999999984331    


Q ss_pred             -----ceEEEeeecccc
Q 004835          333 -----KGYLIDFNLAMV  344 (728)
Q Consensus       333 -----~~kL~DFGlA~~  344 (728)
                           .+.|+||+-+..
T Consensus       248 ~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          248 SSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             TSEEEEEEECCCTTCEE
T ss_pred             cccccceEEEEeCCccc
Confidence                 378999997753

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.29  E-value=8.1e-12  Score=128.37  Aligned_cols=140  Identities=12%  Similarity=0.053  Sum_probs=112.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ++.|.+...++.|+++.||++..  .+..+++|+....  .....+.+|+.+++.+.+...++++++++...+..|+|||
T Consensus        13 l~~~~~~~~~~g~s~~~v~~~~~--~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e   90 (263)
T 3tm0_A           13 IEKYRCVKDTEGMSPAKVYKLVG--ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMS   90 (263)
T ss_dssp             HTTSEEEECCSCCSSSEEEEEEC--SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEE
T ss_pred             hccceeEeeccCCCCCeEEEEEC--CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEE
Confidence            35799999999999999999975  4789999998642  2345688999999999643337888888888889999999


Q ss_pred             ccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHh---------------------------------------------
Q 004835          278 HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHK---------------------------------------------  312 (728)
Q Consensus       278 ~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs---------------------------------------------  312 (728)
                      |++|..+.....  +......++.+++.+|+.||+                                             
T Consensus        91 ~i~G~~l~~~~~--~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (263)
T 3tm0_A           91 EADGVLCSEEYE--DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPR  168 (263)
T ss_dssp             CCSSEEHHHHCC--TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHH
T ss_pred             ecCCeehhhccC--CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHH
Confidence            999988765421  223345788999999999998                                             


Q ss_pred             --------------CCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          313 --------------QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       313 --------------~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                                    ..++|+|++|.|||++ ++..+.|+||+.+..
T Consensus       169 ~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~-~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          169 ELYDFLKTEKPEEELVFSHGDLGDSNIFVK-DGKVSGFIDLGRSGR  213 (263)
T ss_dssp             HHHHHHHHCCCCCCEEEECSSCCTTSEEEE-TTEEEEECCCTTCEE
T ss_pred             HHHHHHHhcCCCCCceEECCCCCcCcEEEE-CCcEEEEEEchhccc
Confidence                          4589999999999998 555556999998865

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.23  E-value=2e-11  Score=124.11  Aligned_cols=139  Identities=13%  Similarity=0.079  Sum_probs=105.0

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCc-eEEecceEEeCCeeEEEE
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNF-IIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~-Ivkl~~~~~~~~~~~LV~  276 (728)
                      ..+..|.+....+.|..+.||++.. .+|..+++|+.... ....+.+|+.+++.+.+.++ +++++++...++..|+||
T Consensus        17 ~~~~~~~~~~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~-~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~   94 (264)
T 1nd4_A           17 ERLFGYDWAQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSG-ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLL   94 (264)
T ss_dssp             TTTTTCEEEECSCTTSSCEEEEEEC-TTSCCEEEEEECSC-TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEE
T ss_pred             HhcCCCceEecccCCCCceEEEEec-CCCCeEEEEeCCcc-cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEE
Confidence            3456777765555677799999965 46788999987654 33557889999999876654 667888888778899999


Q ss_pred             eccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCC------------------------------------------
Q 004835          277 EHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQG------------------------------------------  314 (728)
Q Consensus       277 E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~g------------------------------------------  314 (728)
                      ||++|..+.  ....   ....++.+++..|..||+..                                          
T Consensus        95 e~i~G~~l~--~~~~---~~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (264)
T 1nd4_A           95 GEVPGQDLL--SSHL---APAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAE  169 (264)
T ss_dssp             ECCSSEETT--TSCC---CHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHH
T ss_pred             EecCCcccC--cCcC---CHhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHH
Confidence            999997764  2222   22356777888888888643                                          


Q ss_pred             ----------------cEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          315 ----------------IVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       315 ----------------IIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                                      ++|+|++|.|||++ ++..+.|+|||.+..
T Consensus       170 ~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~-~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          170 LFARLKARMPDGEDLVVTHGDACLPNIMVE-NGRFSGFIDCGRLGV  214 (264)
T ss_dssp             HHHHHHHTCCSSCCEEEECSSCCGGGEEEE-TTEEEEECCCTTCEE
T ss_pred             HHHHHHHhcCCCCCeEEECCCCCCCcEEEE-CCcEEEEEcchhccc
Confidence                            99999999999998 555556999999875

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=99.04  E-value=6e-10  Score=120.12  Aligned_cols=140  Identities=16%  Similarity=0.225  Sum_probs=105.8

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEecc--CcC---chhHHHHHHHHHHhcCCCCc-eEEecceEEeC---CeeE
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH--ANA---SKHYVSNELRMLERFGGKNF-IIKYEGCFKCG---DSDC  273 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~--~~~---~~~~~~~Ei~iL~~L~h~n~-Ivkl~~~~~~~---~~~~  273 (728)
                      ...++.|+.|.++.||++...  +..+++|+..  ...   ....+.+|+.+++.+.+... +++++.++...   +..|
T Consensus        40 ~~~~~~l~~G~sn~~y~v~~~--~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~  117 (359)
T 3dxp_A           40 PLSVEQFKGGQSNPTFKLVTP--GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAF  117 (359)
T ss_dssp             CCEEEECCC-CCSCEEEEECS--SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCE
T ss_pred             CceEEEcCCcccceEEEEEEC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeE
Confidence            334678999999999999863  5688899876  322   23467899999999985332 67777777665   4589


Q ss_pred             EEEeccCCCChH-HHhhcCChHHHHHHHHHHHHHHHHHHh----------------------------------------
Q 004835          274 FVLEHVKHDRPE-VLKKEIDLSQLQWYGYCLFRALASLHK----------------------------------------  312 (728)
Q Consensus       274 LV~E~~~~~~l~-~l~~~l~~~~~~~i~~QIl~aL~yLHs----------------------------------------  312 (728)
                      +||||++|..+. .....++......++.+++.+|+.||+                                        
T Consensus       118 ~vme~v~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (359)
T 3dxp_A          118 YIMEFVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAM  197 (359)
T ss_dssp             EEEECCCCBCCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             EEEEecCCeecCCCccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHH
Confidence            999999997663 233457788888999999999999997                                        


Q ss_pred             ------------------CCcEeccCCCCceEeecCCC-ceEEEeeecccc
Q 004835          313 ------------------QGIVHRDVKPGNFLFSCKAV-KGYLIDFNLAMV  344 (728)
Q Consensus       313 ------------------~gIIHRDIKPeNILld~~~~-~~kL~DFGlA~~  344 (728)
                                        ..++|+|++|.|||++.++. .+.|+||+.+..
T Consensus       198 ~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          198 DSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             HHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             HHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                              36999999999999985443 357999999875

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.83  E-value=5.3e-10  Score=117.85  Aligned_cols=133  Identities=20%  Similarity=0.194  Sum_probs=98.3

Q ss_pred             EEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCC-CCc-eEEecceEEeCC---eeEEEEeccCC
Q 004835          207 EEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGG-KNF-IIKYEGCFKCGD---SDCFVLEHVKH  281 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h-~n~-Ivkl~~~~~~~~---~~~LV~E~~~~  281 (728)
                      +.++.|.+..||++.     ..+++|+.........+.+|..+|+.+.+ ... +..++.......   ..|+||++++|
T Consensus        26 ~~~~~G~~n~v~~v~-----~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G  100 (304)
T 3sg8_A           26 EISGEGNDCIAYEIN-----RDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKG  100 (304)
T ss_dssp             CEEEECSSEEEEEST-----TSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCC
T ss_pred             EecCCCCcceEEEEC-----CEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCC
Confidence            358999999999863     45899987655445678899999998843 221 333433332222   45899999999


Q ss_pred             CChHH-HhhcCChHHHHHHHHHHHHHHHHHHh------------------------------------------------
Q 004835          282 DRPEV-LKKEIDLSQLQWYGYCLFRALASLHK------------------------------------------------  312 (728)
Q Consensus       282 ~~l~~-l~~~l~~~~~~~i~~QIl~aL~yLHs------------------------------------------------  312 (728)
                      ..+.. ....++..+...++.+++..|+.||+                                                
T Consensus       101 ~~l~~~~~~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  180 (304)
T 3sg8_A          101 VPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDI  180 (304)
T ss_dssp             EECCHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             eECCccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHH
Confidence            77653 34557888888899999999999886                                                


Q ss_pred             ----------CCcEeccCCCCceEeecC-CCceEEEeeecccc
Q 004835          313 ----------QGIVHRDVKPGNFLFSCK-AVKGYLIDFNLAMV  344 (728)
Q Consensus       313 ----------~gIIHRDIKPeNILld~~-~~~~kL~DFGlA~~  344 (728)
                                ..++|+|++|.|||++.+ +..+.|+||+.+..
T Consensus       181 l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~  223 (304)
T 3sg8_A          181 LENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAI  223 (304)
T ss_dssp             HTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEE
T ss_pred             HhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCcc
Confidence                      137999999999999943 55578999999875

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.49  E-value=4.9e-07  Score=95.62  Aligned_cols=134  Identities=16%  Similarity=0.133  Sum_probs=92.7

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCC-C-ceEEecceEE-eCCeeEEEEeccCCC
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGK-N-FIIKYEGCFK-CGDSDCFVLEHVKHD  282 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~-n-~Ivkl~~~~~-~~~~~~LV~E~~~~~  282 (728)
                      ++.++.|....||+.     |..+++|+.........+.+|..+|..+.+. . .+.+.+.+.. ..+..|+||||++|.
T Consensus        24 v~~l~~G~~n~v~~v-----g~~~VlR~~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~   98 (306)
T 3tdw_A           24 VESLGEGFRNYAILV-----NGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQ   98 (306)
T ss_dssp             EEEEEECSSEEEEEE-----TTTEEEEEESSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSE
T ss_pred             eeecCCCcceeEEEE-----CCEEEEEecCCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCe
Confidence            346788999999988     5678899865443456788999999999763 1 1455555543 345678999999997


Q ss_pred             ChHH-HhhcCChHHHHHHHHHHHHHHHHHHhC------------------------------------------------
Q 004835          283 RPEV-LKKEIDLSQLQWYGYCLFRALASLHKQ------------------------------------------------  313 (728)
Q Consensus       283 ~l~~-l~~~l~~~~~~~i~~QIl~aL~yLHs~------------------------------------------------  313 (728)
                      .+.. ....++......++.++...|+.||+.                                                
T Consensus        99 ~l~~~~~~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  178 (306)
T 3tdw_A           99 ILGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQS  178 (306)
T ss_dssp             ECHHHHHTTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred             ECchhhhhhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence            6654 223344455555555555555555532                                                


Q ss_pred             ------------CcEeccCCCCceEeec---CCCceEEEeeecccc
Q 004835          314 ------------GIVHRDVKPGNFLFSC---KAVKGYLIDFNLAMV  344 (728)
Q Consensus       314 ------------gIIHRDIKPeNILld~---~~~~~kL~DFGlA~~  344 (728)
                                  .++|+|++|.|||++.   ++....|+||+.+..
T Consensus       179 ~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          179 YMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             HHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             HHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence                        3599999999999984   244457999999875

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.33  E-value=3.6e-06  Score=86.30  Aligned_cols=139  Identities=16%  Similarity=0.136  Sum_probs=96.1

Q ss_pred             CeeEEEEecccCce-EEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          202 SFIVEEEEGSGGYG-TVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       202 ~y~i~~~LG~G~fG-~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      .|+.. .+..|..| .||+......+..+++|+.... ....+.+|..+|..+...--+.+++.++..++..|+|||+++
T Consensus        26 g~~~~-~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~-~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~  103 (272)
T 4gkh_A           26 GYRWA-RDNVGQSGATIYRLYGKPNAPELFLKHGKGS-VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIP  103 (272)
T ss_dssp             TCEEE-EEECSSSSCEEEEEECCTTCCCEEEEEEETH-HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCC
T ss_pred             CCeEE-EccCCCcCCeEEEEEecCCCeEEEEEECCCC-CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeC
Confidence            45543 34445444 7999888777888999986533 345578899999888643226778888888899999999999


Q ss_pred             CCChHHHhhcCChHHHHHHHHHHHHHHHHHHhC-----------------------------------------------
Q 004835          281 HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQ-----------------------------------------------  313 (728)
Q Consensus       281 ~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~-----------------------------------------------  313 (728)
                      |..+....... ......+..++...|..||..                                               
T Consensus       104 G~~~~~~~~~~-~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (272)
T 4gkh_A          104 GKTAFQVLEEY-PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKE  182 (272)
T ss_dssp             SEEHHHHHHHC-GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHH
T ss_pred             CccccccccCC-HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHH
Confidence            97765443221 122334455555555555521                                               


Q ss_pred             -----------CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          314 -----------GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       314 -----------gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                                 .++|+|+.|.|||++ ++...-|+||+.+..
T Consensus       183 l~~~~~~~~~~~l~HGDl~~~Nil~~-~~~~~~viDwe~a~~  223 (272)
T 4gkh_A          183 MHKLLPFSPDSVVTHGDFSLDNLIFD-EGKLIGCIDVGRVGI  223 (272)
T ss_dssp             HHTTCCCCCCEEEECSCCCTTSEEEE-TTEEEEECCCTTCEE
T ss_pred             HHhcccccCCcEEEcCCCCCCeEEEE-CCeEEEEEECccccc
Confidence                       269999999999998 555566999999875

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=98.14  E-value=3.7e-06  Score=90.10  Aligned_cols=80  Identities=10%  Similarity=0.099  Sum_probs=55.3

Q ss_pred             eEEEEe-cccCceEEEEEEEc--C----CCeEEEEEeccCcC-----chhHHHHHHHHHHhcCCC-C-ceEEecceEEeC
Q 004835          204 IVEEEE-GSGGYGTVYRARRK--N----DGTVVAIKCPHANA-----SKHYVSNELRMLERFGGK-N-FIIKYEGCFKCG  269 (728)
Q Consensus       204 ~i~~~L-G~G~fG~Vy~a~~~--~----~g~~VAIK~i~~~~-----~~~~~~~Ei~iL~~L~h~-n-~Ivkl~~~~~~~  269 (728)
                      ...+.| +.|....+|+....  .    ++..+++|+.....     ....+.+|+.+++.+... . .+.+++.+...+
T Consensus        23 ~~~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~  102 (357)
T 3ats_A           23 TVESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTG  102 (357)
T ss_dssp             EEEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSS
T ss_pred             EEEEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCC
Confidence            345678 88999999998753  1    16789999875432     235577899988887542 2 266677666544


Q ss_pred             ---CeeEEEEeccCCCC
Q 004835          270 ---DSDCFVLEHVKHDR  283 (728)
Q Consensus       270 ---~~~~LV~E~~~~~~  283 (728)
                         +..|+||||++|..
T Consensus       103 ~~~g~~~~v~e~l~G~~  119 (357)
T 3ats_A          103 DVLGTPFFLMDYVEGVV  119 (357)
T ss_dssp             TTTSSCEEEEECCCCBC
T ss_pred             CccCCceEEEEecCCCC
Confidence               35789999998754

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.96  E-value=1.5e-05  Score=86.84  Aligned_cols=75  Identities=17%  Similarity=0.168  Sum_probs=50.6

Q ss_pred             EEEEecccCceEEEEEEEcCCCeEEEEEeccCc---------CchhHHHHHHHHHHhcCC--CCceEEecceEEeCCeeE
Q 004835          205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---------ASKHYVSNELRMLERFGG--KNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       205 i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~---------~~~~~~~~Ei~iL~~L~h--~n~Ivkl~~~~~~~~~~~  273 (728)
                      ..+.||.|.++.||++....+++.|+||.....         ....++..|..+|..+..  +..+++++.+  +.+..+
T Consensus        34 ~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~  111 (397)
T 2olc_A           34 TCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAV  111 (397)
T ss_dssp             EEEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTE
T ss_pred             EEEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccE
Confidence            356899999999999976556789999975421         123456789999888753  2334555543  355678


Q ss_pred             EEEeccCC
Q 004835          274 FVLEHVKH  281 (728)
Q Consensus       274 LV~E~~~~  281 (728)
                      +||||+++
T Consensus       112 lvmE~l~g  119 (397)
T 2olc_A          112 TVMEDLSH  119 (397)
T ss_dssp             EEECCCTT
T ss_pred             EEEEeCCC
Confidence            99999976

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.88  E-value=7.7e-05  Score=78.51  Aligned_cols=134  Identities=14%  Similarity=0.105  Sum_probs=77.7

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCC-ceEEecc------eEEeCCeeEEEEec
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKN-FIIKYEG------CFKCGDSDCFVLEH  278 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n-~Ivkl~~------~~~~~~~~~LV~E~  278 (728)
                      ++.|+.|..+.||++...  +..+++|+....  ...+..|+.++..|.... .++.++.      +...++..++||+|
T Consensus        37 ~~~l~gG~~n~~~~v~~~--~~~~vlk~~~~~--~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~  112 (346)
T 2q83_A           37 IDVIQGNQMALVWKVHTD--SGAVCLKRIHRP--EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW  112 (346)
T ss_dssp             EEECC----CEEEEEEET--TEEEEEEEECSC--HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred             eeeccccccCcEEEEEeC--CCCEEEEecCCC--HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence            346677788999999873  445999988753  334445666665553211 1333332      12346778999999


Q ss_pred             cCCCChH-----HH----------h---hcC--C-----------hHH-------------------------------H
Q 004835          279 VKHDRPE-----VL----------K---KEI--D-----------LSQ-------------------------------L  296 (728)
Q Consensus       279 ~~~~~l~-----~l----------~---~~l--~-----------~~~-------------------------------~  296 (728)
                      ++|..+.     .+          .   ..+  +           +..                               .
T Consensus       113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  192 (346)
T 2q83_A          113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI  192 (346)
T ss_dssp             CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence            9985321     10          0   001  1           100                               0


Q ss_pred             HHHHHHHHHHHHHHH-------------hCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          297 QWYGYCLFRALASLH-------------KQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       297 ~~i~~QIl~aL~yLH-------------s~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..+..++..++.+|+             ..+++|+|+++.|||++ .+..+.|+||+.+..
T Consensus       193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~-~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLG-ENEQIWVIDLDTVSF  252 (346)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEEC-GGGCEEECCCTTCEE
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEe-CCCcEEEEehhhccc
Confidence            011122334566665             25799999999999997 445689999999864

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=97.52  E-value=0.00024  Score=74.57  Aligned_cols=138  Identities=12%  Similarity=0.056  Sum_probs=80.5

Q ss_pred             eEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCc-eEEecce------EEeCCeeEEEE
Q 004835          204 IVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNF-IIKYEGC------FKCGDSDCFVL  276 (728)
Q Consensus       204 ~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~-Ivkl~~~------~~~~~~~~LV~  276 (728)
                      .-.+.|+.|....+|++... +| .+++|+.........+..|+.++..+....+ ++.++..      ....+..++||
T Consensus        25 ~~~~~i~~G~~n~~~~v~~~-~g-~~vlk~~~~~~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~  102 (322)
T 2ppq_A           25 TSYKGIAEGVENSNFLLHTT-KD-PLILTLYEKRVEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALI  102 (322)
T ss_dssp             EEEEEECC---EEEEEEEES-SC-CEEEEEECC---CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEE
T ss_pred             eEeeccCCCcccceEEEEeC-Cc-cEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEE
Confidence            44567888988999999863 33 6889988764344566778888877754331 3333321      12345679999


Q ss_pred             eccCCCChH-----HH----------h---hcCC-----------hHHHH--------H----HHHHHHHHHHHHHh---
Q 004835          277 EHVKHDRPE-----VL----------K---KEID-----------LSQLQ--------W----YGYCLFRALASLHK---  312 (728)
Q Consensus       277 E~~~~~~l~-----~l----------~---~~l~-----------~~~~~--------~----i~~QIl~aL~yLHs---  312 (728)
                      +|++|..+.     .+          .   ..+.           |....        .    +...+...+.+++.   
T Consensus       103 ~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~  182 (322)
T 2ppq_A          103 SFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWP  182 (322)
T ss_dssp             ECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCC
T ss_pred             EeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCc
Confidence            999875421     11          0   0111           11100        0    00113344555553   


Q ss_pred             ----CCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          313 ----QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       313 ----~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                          .+++|+|+.+.|||++ ++..+.|+||+.+..
T Consensus       183 ~~~~~~liHgDl~~~Nil~~-~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          183 KDLPAGVIHADLFQDNVFFL-GDELSGLIDFYFACN  217 (322)
T ss_dssp             CSSCEEEECSCCCGGGEEEE-TTEEEEECCCTTCEE
T ss_pred             ccCCcccCCCCCCccCEEEe-CCceEEEecchhccC
Confidence                3799999999999998 444457999998874

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=97.38  E-value=0.00054  Score=72.84  Aligned_cols=76  Identities=13%  Similarity=0.111  Sum_probs=58.7

Q ss_pred             EEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCC--CCceEEecceEEeCCeeEEEEeccCCC
Q 004835          205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGG--KNFIIKYEGCFKCGDSDCFVLEHVKHD  282 (728)
Q Consensus       205 i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h--~n~Ivkl~~~~~~~~~~~LV~E~~~~~  282 (728)
                      -.+.|+.|....+|+...  ++..+++|+.... ....+..|...|+.|..  .-.+++++.+....+..|+||||+++.
T Consensus        40 ~~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~-~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~  116 (312)
T 3jr1_A           40 HKEKLYSGEMNEIWLIND--EVQTVFVKINERS-YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS  116 (312)
T ss_dssp             EEEEECCSSSSEEEEEES--SSCEEEEEEEEGG-GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred             eeEEeCCccceeeeEEEE--CCCeEEEEeCCcc-cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence            356789999999999975  5678899986543 35567889988888753  223777887777778899999999986


Q ss_pred             C
Q 004835          283 R  283 (728)
Q Consensus       283 ~  283 (728)
                      .
T Consensus       117 ~  117 (312)
T 3jr1_A          117 K  117 (312)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=97.31  E-value=0.00054  Score=75.33  Aligned_cols=72  Identities=10%  Similarity=0.016  Sum_probs=43.4

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEecc-------Cc-C---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPH-------AN-A---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~-------~~-~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      .+.||.|..+.||++..  +++.++||...       .. .   ....+..|+..+..-..+..+++++.+.  .+..++
T Consensus        39 i~~l~~G~~n~vyrv~~--~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~l  114 (420)
T 2pyw_A           39 IKEVGDGNLNFVFIVVG--SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALI  114 (420)
T ss_dssp             EEECCCSSSCEEEEEEC--SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEE
T ss_pred             EEEccCCCcEEEEEEEc--CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEE
Confidence            46789999999999964  57789999321       11 1   1222333433322211222355666554  567899


Q ss_pred             EEecc-CC
Q 004835          275 VLEHV-KH  281 (728)
Q Consensus       275 V~E~~-~~  281 (728)
                      ||||+ ++
T Consensus       115 v~e~l~~g  122 (420)
T 2pyw_A          115 GMRYLEPP  122 (420)
T ss_dssp             EECCCCTT
T ss_pred             EEeecCCc
Confidence            99999 76

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=97.09  E-value=0.00085  Score=74.33  Aligned_cols=72  Identities=11%  Similarity=0.090  Sum_probs=51.4

Q ss_pred             EEEecccCceEEEEEEEcC-------CCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          206 EEEEGSGGYGTVYRARRKN-------DGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~-------~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ++.|+.|....||++....       ++..|++|+.........+.+|..++..+....+.+++++.+.+    .+|+||
T Consensus        78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e~  153 (429)
T 1nw1_A           78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEEY  153 (429)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEECC
T ss_pred             EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEEE
Confidence            4578888889999998753       25789999885422225566899998888765545566665542    389999


Q ss_pred             cCC
Q 004835          279 VKH  281 (728)
Q Consensus       279 ~~~  281 (728)
                      ++|
T Consensus       154 l~G  156 (429)
T 1nw1_A          154 IPS  156 (429)
T ss_dssp             CCE
T ss_pred             eCC
Confidence            986

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=97.04  E-value=0.0055  Score=63.39  Aligned_cols=77  Identities=21%  Similarity=0.248  Sum_probs=54.7

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCC-C-ceEEecceEEeCCeeEEEEe
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGK-N-FIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~-n-~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ...-++.+|.|..+.||+.+. .+|+.|++|+.....  ....+..|...|+.|... . .++++++.    +..++|||
T Consensus        16 ~v~~v~~~g~G~~~~vyrv~l-~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv~e   90 (288)
T 3f7w_A           16 EVAAVAERGHSHRWHLYRVEL-ADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLAME   90 (288)
T ss_dssp             CEEEEEEEEEETTEEEEEEEE-TTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEEEE
T ss_pred             CeEEEEecCCCCCeEEEEEEE-CCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEEEE
Confidence            345677899999999999987 478999999865432  235678899999988532 1 14444433    23489999


Q ss_pred             ccCCCC
Q 004835          278 HVKHDR  283 (728)
Q Consensus       278 ~~~~~~  283 (728)
                      |+.+..
T Consensus        91 ~l~~~~   96 (288)
T 3f7w_A           91 WVDERP   96 (288)
T ss_dssp             CCCCCC
T ss_pred             eecccC
Confidence            988654

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=97.00  E-value=0.0016  Score=68.05  Aligned_cols=70  Identities=13%  Similarity=0.035  Sum_probs=44.6

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEecc-CCCC
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHV-KHDR  283 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~-~~~~  283 (728)
                      ++.|+.|....+|++      ..+++|+...... .....+|+.+++.+....+..++++.  ..+.-++|+||+ ++..
T Consensus        23 i~~l~gG~tN~~~~~------~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~~g~~   94 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA------GDLCLRIPGKGTEEYINRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIAGAQT   94 (301)
T ss_dssp             CEEEESCSSEEEEEE------TTEEEEEECC----CCCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCTTCEE
T ss_pred             eeEcCCcccccccee------eeEEEECCCCCccceeCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecCCCcc
Confidence            678899999999999      4588998764321 11234688777776544423344433  344457899999 6543

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=96.94  E-value=0.0011  Score=69.80  Aligned_cols=73  Identities=10%  Similarity=0.023  Sum_probs=48.7

Q ss_pred             EecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCc-eEEecce-----EEeCCeeEEEEeccC
Q 004835          208 EEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNF-IIKYEGC-----FKCGDSDCFVLEHVK  280 (728)
Q Consensus       208 ~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~-Ivkl~~~-----~~~~~~~~LV~E~~~  280 (728)
                      .|+ |....||++... +|+.+++|+.... .....+..|..++..+....+ ++.++..     ...++..++||+|++
T Consensus        33 ~l~-g~~n~~y~v~~~-~g~~~vlK~~~~~~~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~  110 (328)
T 1zyl_A           33 PLN-SYENRVYQFQDE-DRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVG  110 (328)
T ss_dssp             EEC-CSSSEEEEECCT-TCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCC
T ss_pred             eec-CcccceEEEEcC-CCCEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEecC
Confidence            456 788899988653 4667999998643 345667788888887753321 3444432     223556789999998


Q ss_pred             CC
Q 004835          281 HD  282 (728)
Q Consensus       281 ~~  282 (728)
                      |.
T Consensus       111 G~  112 (328)
T 1zyl_A          111 GR  112 (328)
T ss_dssp             CE
T ss_pred             CC
Confidence            74

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=96.93  E-value=0.0013  Score=69.67  Aligned_cols=32  Identities=31%  Similarity=0.378  Sum_probs=26.7

Q ss_pred             CCcEeccCCCCceEeecC---CCceEEEeeecccc
Q 004835          313 QGIVHRDVKPGNFLFSCK---AVKGYLIDFNLAMV  344 (728)
Q Consensus       313 ~gIIHRDIKPeNILld~~---~~~~kL~DFGlA~~  344 (728)
                      ..++|+|+.+.|||++.+   ...+.|+||+.+..
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            479999999999999842   15688999999876

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.71  E-value=0.0021  Score=70.15  Aligned_cols=134  Identities=14%  Similarity=0.168  Sum_probs=80.7

Q ss_pred             EEecccCceEEEEEEEcC-------CCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          207 EEEGSGGYGTVYRARRKN-------DGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~-------~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      +.|..|-...+|++....       +++.|++|+.... .....+.+|..+++.|....+..++++++..    .+||||
T Consensus        56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e~  131 (379)
T 3feg_A           56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQY  131 (379)
T ss_dssp             EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEEC
T ss_pred             EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEEE
Confidence            467778888899998742       3578999986432 2344566899998887655545666666543    299999


Q ss_pred             cCCCChH-----------HHh------hcC--------C--hHHHHHHHHHHHH-------------------HHHHHH-
Q 004835          279 VKHDRPE-----------VLK------KEI--------D--LSQLQWYGYCLFR-------------------ALASLH-  311 (728)
Q Consensus       279 ~~~~~l~-----------~l~------~~l--------~--~~~~~~i~~QIl~-------------------aL~yLH-  311 (728)
                      ++|..+.           .+.      +.+        .  +.++..+..++..                   .+..|. 
T Consensus       132 i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~  211 (379)
T 3feg_A          132 IPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRK  211 (379)
T ss_dssp             CSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHHH
T ss_pred             ecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHHH
Confidence            9874321           010      111        1  2344444443321                   233332 


Q ss_pred             ---h----CCcEeccCCCCceEeecC---CCceEEEeeecccc
Q 004835          312 ---K----QGIVHRDVKPGNFLFSCK---AVKGYLIDFNLAMV  344 (728)
Q Consensus       312 ---s----~gIIHRDIKPeNILld~~---~~~~kL~DFGlA~~  344 (728)
                         .    ..++|+|+.+.|||++.+   ...+.|+||..|..
T Consensus       212 ~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~  254 (379)
T 3feg_A          212 LLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY  254 (379)
T ss_dssp             HHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred             HHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence               2    259999999999999844   25789999998875

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=96.51  E-value=0.0039  Score=66.97  Aligned_cols=73  Identities=12%  Similarity=0.042  Sum_probs=44.5

Q ss_pred             EEEecccCceEEEEEEEcC--------CCeEEEEEeccCcCc-hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          206 EEEEGSGGYGTVYRARRKN--------DGTVVAIKCPHANAS-KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~--------~g~~VAIK~i~~~~~-~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      ...|+.|....+|++....        .+..+++|+...... ......|..+++.+....+++++++.+  .  -++||
T Consensus        38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~  113 (369)
T 3c5i_A           38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIE  113 (369)
T ss_dssp             EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGGTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEE
T ss_pred             EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccceecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEE
Confidence            4577888888999998742        126899998754321 112357888888776544344555443  2  37899


Q ss_pred             eccCCC
Q 004835          277 EHVKHD  282 (728)
Q Consensus       277 E~~~~~  282 (728)
                      ||++|.
T Consensus       114 e~i~G~  119 (369)
T 3c5i_A          114 EWLYGD  119 (369)
T ss_dssp             ECCCSE
T ss_pred             EEecCC
Confidence            999874

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=96.31  E-value=0.0086  Score=66.93  Aligned_cols=74  Identities=11%  Similarity=-0.028  Sum_probs=50.4

Q ss_pred             EEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccCCC
Q 004835          205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHD  282 (728)
Q Consensus       205 i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~~~  282 (728)
                      -++.|+.|-...+|++.....+..|++|+...... .-...+|..++..|...++.+++++++.  +  .+||||++|.
T Consensus       112 ~i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~  186 (458)
T 2qg7_A          112 EFQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEIINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGY  186 (458)
T ss_dssp             EEEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSE
T ss_pred             EEEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCc
Confidence            35678889899999999854458899998754221 1112589999999987765677777763  2  3599999863

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=95.69  E-value=0.031  Score=59.48  Aligned_cols=31  Identities=29%  Similarity=0.544  Sum_probs=26.2

Q ss_pred             CCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          313 QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       313 ~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..++|+|+.+.||+++ +++.+.|+||+.+..
T Consensus       206 ~~~~HgD~~~~N~l~~-~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVG-NEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEEC-GGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEe-CCCeEEEEECCCCee
Confidence            3699999999999998 445688999988765

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=94.57  E-value=0.054  Score=59.85  Aligned_cols=75  Identities=11%  Similarity=0.027  Sum_probs=49.7

Q ss_pred             EEEEecccCceEEEEEEEcCC-------CeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          205 VEEEEGSGGYGTVYRARRKND-------GTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       205 i~~~LG~G~fG~Vy~a~~~~~-------g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      -++.|..|-...+|++.....       +..|++|+..... ..-...+|..+++.+....+..++++.+.    -++||
T Consensus        74 ~v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~  149 (424)
T 3mes_A           74 EVKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGKFYDSKVELDVFRYLSNINIAPNIIADFP----EGRIE  149 (424)
T ss_dssp             EEEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEE
T ss_pred             EEEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcchhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEE
Confidence            345677788889999987521       5789999865432 11123578888888765554555554332    27899


Q ss_pred             eccCCCC
Q 004835          277 EHVKHDR  283 (728)
Q Consensus       277 E~~~~~~  283 (728)
                      ||++|..
T Consensus       150 efI~G~~  156 (424)
T 3mes_A          150 EFIDGEP  156 (424)
T ss_dssp             ECCCSEE
T ss_pred             EEeCCcc
Confidence            9999854

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=91.63  E-value=0.25  Score=53.76  Aligned_cols=30  Identities=33%  Similarity=0.472  Sum_probs=24.9

Q ss_pred             cEeccCCCCceEeec-----CCCceEEEeeecccc
Q 004835          315 IVHRDVKPGNFLFSC-----KAVKGYLIDFNLAMV  344 (728)
Q Consensus       315 IIHRDIKPeNILld~-----~~~~~kL~DFGlA~~  344 (728)
                      ++|+|+.+.|||+..     ++..+.++||.+|..
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            679999999999942     456689999999875

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=87.85  E-value=4.3  Score=40.78  Aligned_cols=40  Identities=15%  Similarity=0.036  Sum_probs=25.8

Q ss_pred             hcCChHHHHHHHHHHHHHHHHHH-hCCcEeccCCCCceEee
Q 004835          289 KEIDLSQLQWYGYCLFRALASLH-KQGIVHRDVKPGNFLFS  328 (728)
Q Consensus       289 ~~l~~~~~~~i~~QIl~aL~yLH-s~gIIHRDIKPeNILld  328 (728)
                      ..+++.+++.+..|.+.+|.-+- .+.-..+=+-|..|+|.
T Consensus        44 ~PlsEEqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~   84 (229)
T 2yle_A           44 QPINEEQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVW   84 (229)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEE
T ss_pred             CCcCHHHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEe
Confidence            45999999999999999886652 11111122234666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	728
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	7e-26
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-17
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-25
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-13
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	5e-25
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	1e-07
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	7e-25
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	7e-16
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	8e-25
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-18
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-24
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-17
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	4e-24
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	6e-23
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	4e-24
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-21
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	6e-24
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-17
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	8e-24
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-08
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-23
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	4e-17
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-23
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-13
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-23
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-15
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	5e-23
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-16
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	5e-22
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-12
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-21
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	4e-14
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-21
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	1e-18
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-21
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	4e-07
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	3e-21
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-08
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	5e-21
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-13
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-20
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-15
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-20
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	6e-18
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-20
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-14
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-20
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	6e-18
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-20
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-11
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-20
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-18
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	5e-20
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	7e-18
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	6e-20
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-11
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	6e-20
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-09
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	6e-20
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-09
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	1e-19
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	3e-13
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-19
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	4e-04
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-19
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	3e-17
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-19
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	8e-16
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-19
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-06
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-19
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	6e-17
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-19
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-07
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	4e-19
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	4e-08
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	6e-19
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-05
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	6e-19
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	9e-15
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-18
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-07
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-18
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-15
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-18
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	3e-11
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-18
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	3e-17
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-18
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-06
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-18
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-17
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	3e-18
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-10
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	4e-18
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	7e-18
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	5e-18
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-08
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	5e-18
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	8e-09
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	5e-18
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	8e-08
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	5e-18
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	5e-07
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	6e-18
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-06
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	7e-18
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	6e-11
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-17
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	5e-09
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-17
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	6e-17
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	8e-17
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-09
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-16
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	9e-07
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-16
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	6e-08
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	6e-16
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	4e-07
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-15
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-05
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	5e-14
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	8e-10
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	8e-14

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 7e-26
 Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 15/190 (7%)

Query: 197 LPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVSNELRMLERF 253
           +P  E + + +  G G YG V  A  +     VA+K      A      +  E+ + +  
Sbjct: 1   VPFVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML 60

Query: 254 GGKNFIIKYEGCFKCGDSDCFVLEHVKHDRP-EVLKKEIDLS--QLQWYGYCLFRALASL 310
             +N ++K+ G  + G+     LE+       + ++ +I +     Q + + L   +  L
Sbjct: 61  NHEN-VVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYL 119

Query: 311 HKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQA--TLPGT-KYVPP--V 364
           H  GI HRD+KP N L   +  +K  + DF LA V    +  +    + GT  YV P  +
Sbjct: 120 HGIGITHRDIKPENLLLDERDNLK--ISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 177

Query: 365 NGRKVPSAKS 374
             R+  +   
Sbjct: 178 KRREFHAEPV 187

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (198), Expect = 3e-17
 Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 51/181 (28%)

Query: 528 HPVPVLIIFYL---LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLY 584
                +  F L      N +++      GT  + APE+L R +     +D+WS G+ L  
Sbjct: 139 RDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTA 198

Query: 585 LMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWC 644
           ++ G  P+    +                                Y+        L  W 
Sbjct: 199 MLAGELPWDQPSDSCQ----------------------------EYSDWKEKKTYLNPWK 230

Query: 645 KLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQG 704
           K           I S+   L+ K L  NP  RI+  D  K  ++          K L++G
Sbjct: 231 K-----------IDSAPLALLHKILVENPSARITIPDIKKDRWY---------NKPLKKG 270

Query: 705 S 705
           +
Sbjct: 271 A 271

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 2e-25
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 11/171 (6%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--VSNELRMLERFGGKNF 258
           + + +  E G G +G VY+A+ K    + A K     + +       E+ +L      N 
Sbjct: 12  DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPN- 70

Query: 259 IIKYEGCFKCGDSDCFVLEHVKHDRPEVL----KKEIDLSQLQWYGYCLFRALASLHKQG 314
           I+K    F   ++   ++E       + +    ++ +  SQ+Q        AL  LH   
Sbjct: 71  IVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNK 130

Query: 315 IVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           I+HRD+K GN LF+    +K  L DF ++         + +  GT  ++ P
Sbjct: 131 IIHRDLKAGNILFTLDGDIK--LADFGVSAKNTRTIQRRDSFIGTPYWMAP 179

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (169), Expect = 2e-13
 Identities = 30/167 (17%), Positives = 50/167 (29%), Gaps = 48/167 (28%)

Query: 542 NGKQKKDGPCAGTKGFRAPEVLF----RSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE 597
               ++     GT  + APEV+     + +    K D+WS G+TL+ +     P      
Sbjct: 161 TRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNP 220

Query: 598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVI 657
             +                            L       P  L +  +            
Sbjct: 221 MRV----------------------------LLKIAKSEPPTLAQPSR-----------W 241

Query: 658 PSSLFDLVDKCLTVNPRLRISAEDALKHEFF-----APCHEMLRKQK 699
            S+  D + KCL  N   R +    L+H F       P  E++ + K
Sbjct: 242 SSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTVDSNKPIRELIAEAK 288

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  103 bits (258), Expect = 5e-25
 Identities = 35/176 (19%), Positives = 66/176 (37%), Gaps = 15/176 (8%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKY 262
           + V    G G +G ++      +   VAIK     +    + +E R  +   G   I   
Sbjct: 7   YKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNV 66

Query: 263 EGCFKCGDSDCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHKQGIVHRD 319
               + G  +  V++ +     ++L        +  +      +   + S+H++ +V+RD
Sbjct: 67  YYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRD 126

Query: 320 VKPGNFLFS----CKAVKGYLIDFNLAMVGFDGSFNQA-------TLPGT-KYVPP 363
           +KP NFL        A   Y++DF +     D    Q         L GT +Y+  
Sbjct: 127 IKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSI 182

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 18/123 (14%)

Query: 549 GPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRG 608
              +GT  + +       + Q  + D+ + G   +Y + G  P+ G      K   +  G
Sbjct: 171 KNLSGTARYMSINTH-LGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIG 229

Query: 609 SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLI--TKRPDFLEVIPSSLFDLVD 666
            +   +   L    + FPE+ Y            + + +     PD+       L  L  
Sbjct: 230 EKK--QSTPLRELCAGFPEEFY--------KYMHYARNLAFDATPDY-----DYLQGLFS 274

Query: 667 KCL 669
           K L
Sbjct: 275 KVL 277

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 7e-25
 Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 9/169 (5%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC--PHANASKHYVSNELRMLERFGGKNF 258
           + +   E+ G G  GTVY A     G  VAI+         K  + NE+ ++      N 
Sbjct: 20  KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN- 78

Query: 259 IIKYEGCFKCGDSDCFVLEHVKHD--RPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIV 316
           I+ Y   +  GD    V+E++        V +  +D  Q+        +AL  LH   ++
Sbjct: 79  IVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVI 138

Query: 317 HRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
           HRD+K  N L      VK    DF            ++T+ GT  ++ P
Sbjct: 139 HRDIKSDNILLGMDGSVKL--TDFGFCAQITPEQSKRSTMVGTPYWMAP 185

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 7e-16
 Identities = 40/193 (20%), Positives = 69/193 (35%), Gaps = 51/193 (26%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTK 555
           LHSN +        N           +LL     V +    +      +Q K     GT 
Sbjct: 132 LHSNQVIHRDIKSDN-----------ILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTP 180

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEV 615
            + APEV+ R  + GPK+DIWS G+  + ++ G  P+  +       +    G+      
Sbjct: 181 YWMAPEVVTRKAY-GPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGT------ 233

Query: 616 AKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL 675
                               P +  PE              + +   D +++CL ++   
Sbjct: 234 --------------------PELQNPEK-------------LSAIFRDFLNRCLDMDVEK 260

Query: 676 RISAEDALKHEFF 688
           R SA++ L+H+F 
Sbjct: 261 RGSAKELLQHQFL 273

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 8e-25
 Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 15/178 (8%)

Query: 198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKN 257
           P   S+   +  G+G +G VY+A+  + G +VAIK       K + + EL+++ +    N
Sbjct: 17  PQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKK--VLQDKRFKNRELQIMRKLDHCN 74

Query: 258 FIIKYEGCFKCGDSD------CFVLEHVKHDRPEVL------KKEIDLSQLQWYGYCLFR 305
            I++    F              VL++V      V       K+ + +  ++ Y Y LFR
Sbjct: 75  -IVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFR 133

Query: 306 ALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
           +LA +H  GI HRD+KP N L         L DF  A     G  N + +    Y  P
Sbjct: 134 SLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAP 191

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 1e-18
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 15/157 (9%)

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDLWE 614
            +RAPE++F +      +D+WSAG  L  L++G+  F GD   + + +I K+ G+    +
Sbjct: 187 YYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQ 246

Query: 615 VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR 674
           + +++          Y     P I    W K+   R       P     L  + L   P 
Sbjct: 247 IREMNPN--------YTEFKFPQIKAHPWTKVFRPR------TPPEAIALCSRLLEYTPT 292

Query: 675 LRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDNTT 711
            R++  +A  H FF    +   K    R   ++ N T
Sbjct: 293 ARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFT 329

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 2e-24
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 15/173 (8%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHYVSNELRMLERFGG 255
           E F +    G G +G VY AR K    ++A+K            +H +  E+ +      
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 256 KNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASLHK 312
            N I++  G F        +LE+          ++    D  +   Y   L  AL+  H 
Sbjct: 66  PN-ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHS 124

Query: 313 QGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           + ++HRD+KP N L      +K  + DF  ++          TL GT  Y+PP
Sbjct: 125 KRVIHRDIKPENLLLGSAGELK--IADFGWSVHAPSSRRT--TLCGTLDYLPP 173

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (196), Expect = 5e-17
 Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 56/193 (29%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTK 555
            HS  +             D+    +LL +       +  F   +     ++   C GT 
Sbjct: 122 CHSKRVI----------HRDIKPENLLLGSAGELK--IADFGWSVHAPSSRRTTLC-GTL 168

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEV 615
            +  PE++    H   K+D+WS GV     ++G+ PF  +  Q                 
Sbjct: 169 DYLPPEMIEGRMH-DEKVDLWSLGVLCYEFLVGKPPFEANTYQET--------------- 212

Query: 616 AKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL 675
                                      + ++      F + +     DL+ + L  NP  
Sbjct: 213 ---------------------------YKRISRVEFTFPDFVTEGARDLISRLLKHNPSQ 245

Query: 676 RISAEDALKHEFF 688
           R    + L+H + 
Sbjct: 246 RPMLREVLEHPWI 258

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 4e-24
 Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 14/172 (8%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS---NELRMLERFGGKN 257
           + F    E G+G  G V++   K  G V+A K  H        +    EL++L       
Sbjct: 6   DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY 65

Query: 258 FIIKYEGCFKCGDSDCFVLEHVKHDRPEVL---KKEIDLSQLQWYGYCLFRALASLH-KQ 313
            I+ + G F         +EH+     + +      I    L      + + L  L  K 
Sbjct: 66  -IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH 124

Query: 314 GIVHRDVKPGNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
            I+HRDVKP N L + +  +K  L DF ++    D   N  +  GT+ Y+ P
Sbjct: 125 KIMHRDVKPSNILVNSRGEIK--LCDFGVSGQLIDSMAN--SFVGTRSYMSP 172

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (244), Expect = 6e-23
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 5/141 (3%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
             GT+ + +PE L +  H   + DIWS G++L+ + +GR P      + ++ +   +   
Sbjct: 163 FVGTRSYMSPERL-QGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEG 221

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPD---FLEVIPSSLFDLVDK 667
           D  E      R    P   Y   S PP+ + E    I   P       V      D V+K
Sbjct: 222 DAAETPP-RPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNK 280

Query: 668 CLTVNPRLRISAEDALKHEFF 688
           CL  NP  R   +  + H F 
Sbjct: 281 CLIKNPAERADLKQLMVHAFI 301

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score =  101 bits (253), Expect = 4e-24
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 3/167 (1%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNF 258
           N + + +  + G G Y  V+ A    +   V +K       K  +  E+++LE   G   
Sbjct: 33  NQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILK-PVKKKKIKREIKILENLRGGPN 91

Query: 259 IIKYEGCFKCGDSD--CFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIV 316
           II      K   S     V EHV +   + L + +    +++Y Y + +AL   H  GI+
Sbjct: 92  IITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIM 151

Query: 317 HRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
           HRDVKP N +   +  K  LID+ LA     G      +    +  P
Sbjct: 152 HRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGP 198

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 93.8 bits (232), Expect = 2e-21
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 19/195 (9%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTK 555
            HS GI        N           +++   H    LI + L       ++      ++
Sbjct: 145 CHSMGIMHRDVKPHN-----------VMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASR 193

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG--DPEQNIKDIAKLRGSEDLW 613
            F+ PE+L   Q     LD+WS G  L  ++  + PFF   D    +  IAK+ G+EDL+
Sbjct: 194 YFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLY 253

Query: 614 EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNP 673
           +    +N       D      L   +   W + +    +   ++     D +DK L  + 
Sbjct: 254 DYIDKYN----IELDPRFNDILGRHSRKRWERFV--HSENQHLVSPEALDFLDKLLRYDH 307

Query: 674 RLRISAEDALKHEFF 688
           + R++A +A++H +F
Sbjct: 308 QSRLTAREAMEHPYF 322

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  101 bits (253), Expect = 6e-24
 Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 8/171 (4%)

Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC--PHANASKHYVSNELRMLERFGGKN 257
           ++ + + EE GSG +G V+R   K  G V   K         K+ V NE+ ++ +     
Sbjct: 28  YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPK 87

Query: 258 FIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQ 313
            +I     F+       +LE +      DR      ++  +++  Y       L  +H+ 
Sbjct: 88  -LINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEH 146

Query: 314 GIVHRDVKPGNFLFSC-KAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
            IVH D+KP N +    KA    +IDF LA         + T    ++  P
Sbjct: 147 SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAP 197

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 81.6 bits (201), Expect = 3e-17
 Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 49/203 (24%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTK 555
           +H + I             D+    I+  TK      +I F L       +       T 
Sbjct: 143 MHEHSIV----------HLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATA 192

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEV 615
            F APE++   +  G   D+W+ GV    L+ G +PF G+ +                 +
Sbjct: 193 EFAAPEIV-DREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLET--------------L 237

Query: 616 AKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL 675
             +   +  F ED +++                        +     D +   L   PR 
Sbjct: 238 QNVKRCDWEFDEDAFSS------------------------VSPEAKDFIKNLLQKEPRK 273

Query: 676 RISAEDALKHEFFAPCHEMLRKQ 698
           R++  DAL+H +    H  L  +
Sbjct: 274 RLTVHDALEHPWLKGDHSNLTSR 296

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (249), Expect = 8e-24
 Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 13/174 (7%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKY 262
           + +  + GSG +G +Y       G  VAIK          +  E ++ +   G   I   
Sbjct: 9   YRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTI 68

Query: 263 EGCFKCGDSDCFVLEHVK---HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRD 319
             C   GD +  V+E +     D      ++  L  +      +   +  +H +  +HRD
Sbjct: 69  RWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRD 128

Query: 320 VKPGNFLFSCKAVKGYL--IDFNLAMVGFDGSFNQA-------TLPGT-KYVPP 363
           VKP NFL         +  IDF LA    D   +Q         L GT +Y   
Sbjct: 129 VKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASI 182

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.8 bits (131), Expect = 1e-08
 Identities = 17/145 (11%), Positives = 39/145 (26%), Gaps = 38/145 (26%)

Query: 547 KDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKL 606
           ++    GT  + +         Q  + D+ S G  L+Y  +G  P+ G            
Sbjct: 169 ENKNLTGTARYASINTH-LGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATK------ 221

Query: 607 RGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD 666
                  +  ++  ++ S P                            +  PS     ++
Sbjct: 222 -----RQKYERISEKKMSTP-----------------------IEVLCKGYPSEFATYLN 253

Query: 667 KCLTVNPRLRISAE---DALKHEFF 688
            C ++    +          ++ F 
Sbjct: 254 FCRSLRFDDKPDYSYLRQLFRNLFH 278

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-23
 Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 10/183 (5%)

Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH-YVSNELRMLERFGGKNF 258
           +E +++ E+ G G +G V+R    +       K      +    V  E+ +L     +N 
Sbjct: 4   YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRN- 62

Query: 259 IIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQG 314
           I+     F+  +    + E +      +R      E++  ++  Y + +  AL  LH   
Sbjct: 63  ILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHN 122

Query: 315 IVHRDVKPGNFLFSC-KAVKGYLIDFNLAMVGFDGSFNQATLPGTK--YVPPVNGRKVPS 371
           I H D++P N ++   ++    +I+F  A        N   L      Y P V+   V S
Sbjct: 123 IGHFDIRPENIIYQTRRSSTIKIIEFGQARQ-LKPGDNFRLLFTAPEYYAPEVHQHDVVS 181

Query: 372 AKS 374
             +
Sbjct: 182 TAT 184

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 4e-17
 Identities = 38/205 (18%), Positives = 64/205 (31%), Gaps = 49/205 (23%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTK 555
           LHS+ I             D+    I+  T+      +I F                   
Sbjct: 118 LHSHNIGH----------FDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAP 167

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEV 615
            + APEV  +        D+WS G  +  L+ G  PF  +  Q I              +
Sbjct: 168 EYYAPEVH-QHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQI--------------I 212

Query: 616 AKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL 675
             + N E +F E+ +                          I     D VD+ L    + 
Sbjct: 213 ENIMNAEYTFDEEAFKE------------------------ISIEAMDFVDRLLVKERKS 248

Query: 676 RISAEDALKHEFFAPCHEMLRKQKL 700
           R++A +AL+H +     E +  + +
Sbjct: 249 RMTASEALQHPWLKQKIERVSTKVI 273

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (249), Expect = 1e-23
 Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 15/172 (8%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK-----HYVSNELRMLERFGG 255
           + F    E G G +G VY AR   +  VVAIK    +  +       +  E+R L++   
Sbjct: 15  KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRH 74

Query: 256 KNFIIKYEGCFKCGDSDCFVLEHVKH---DRPEVLKKEIDLSQLQWYGYCLFRALASLHK 312
            N  I+Y GC+    +   V+E+      D  EV KK +   ++    +   + LA LH 
Sbjct: 75  PN-TIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS 133

Query: 313 QGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
             ++HRDVK GN L S    VK  L DF  A +    +    T     ++ P
Sbjct: 134 HNMIHRDVKAGNILLSEPGLVK--LGDFGSASIMAPANSFVGTPY---WMAP 180

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.5 bits (167), Expect = 4e-13
 Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 42/160 (26%)

Query: 546 KKDGPCAGTKGFRAPEVLFRSQHQ--GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDI 603
                  GT  + APEV+          K+D+WS G+T + L   + P F     +    
Sbjct: 166 APANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA--- 222

Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD 663
                   L+ +A+  +             +L   +  E+ +                 +
Sbjct: 223 --------LYHIAQNESP------------ALQSGHWSEYFR-----------------N 245

Query: 664 LVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQ 703
            VD CL   P+ R ++E  LKH F            L+++
Sbjct: 246 FVDSCLQKIPQDRPTSEVLLKHRFVLRERPPTVIMDLIQR 285

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 98.2 bits (244), Expect = 2e-23
 Identities = 39/179 (21%), Positives = 67/179 (37%), Gaps = 18/179 (10%)

Query: 200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHY-----------VSNELR 248
           +E++  +E  G G    V R   K      A+K         +              E+ 
Sbjct: 2   YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVD 61

Query: 249 MLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH-DRPEVLKKEIDLS--QLQWYGYCLFR 305
           +L +  G   II+ +  ++       V + +K  +  + L +++ LS  + +     L  
Sbjct: 62  ILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLE 121

Query: 306 ALASLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
            + +LHK  IVHRD+KP N L      +K  L DF  +    D       + GT     
Sbjct: 122 VICALHKLNIVHRDLKPENILLDDDMNIK--LTDFGFSCQ-LDPGEKLREVCGTPSYLA 177

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 74.7 bits (183), Expect = 3e-15
 Identities = 44/198 (22%), Positives = 66/198 (33%), Gaps = 55/198 (27%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTK 555
           LH   I             DL    ILL   ++    L  F         +K     GT 
Sbjct: 126 LHKLNI----------VHRDLKPENILLDDDMNIK--LTDFGFSCQLDPGEKLREVCGTP 173

Query: 556 GFRAPEVLFRSQHQ-----GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
            + APE++  S +      G ++D+WS GV +  L+ G  PF+   +  +  +       
Sbjct: 174 SYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIM----- 228

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
                                         PEW                ++ DLV + L 
Sbjct: 229 ----------------------SGNYQFGSPEWDD-----------YSDTVKDLVSRFLV 255

Query: 671 VNPRLRISAEDALKHEFF 688
           V P+ R +AE+AL H FF
Sbjct: 256 VQPQKRYTAEEALAHPFF 273

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 99.0 bits (246), Expect = 5e-23
 Identities = 34/172 (19%), Positives = 67/172 (38%), Gaps = 12/172 (6%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNF 258
           + + + EE G+G +G V+R   +  G   A K       + K  V  E++ +        
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT- 84

Query: 259 IIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQG 314
           ++     F+  +    + E +      ++      ++   +   Y   + + L  +H+  
Sbjct: 85  LVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN 144

Query: 315 IVHRDVKPGNFLFSCK---AVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
            VH D+KP N +F+ K    +K  LIDF L          + T    ++  P
Sbjct: 145 YVHLDLKPENIMFTTKRSNELK--LIDFGLTAHLDPKQSVKVTTGTAEFAAP 194

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 80.1 bits (197), Expect = 1e-16
 Identities = 40/205 (19%), Positives = 67/205 (32%), Gaps = 49/205 (23%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTK 555
           +H N               DL    I+  TK      LI F L      ++      GT 
Sbjct: 140 MHENNYV----------HLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTA 189

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEV 615
            F APEV    +  G   D+WS GV    L+ G +PF G+ +                 +
Sbjct: 190 EFAAPEVA-EGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDET--------------L 234

Query: 616 AKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL 675
             + + + +  +  ++                         I     D + K L  +P  
Sbjct: 235 RNVKSCDWNMDDSAFSG------------------------ISEDGKDFIRKLLLADPNT 270

Query: 676 RISAEDALKHEFFAPCHEMLRKQKL 700
           R++   AL+H +  P +   R  ++
Sbjct: 271 RMTIHQALEHPWLTPGNAPGRDSQI 295

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.0 bits (238), Expect = 5e-22
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 13/151 (8%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH-----ANASKHYVSNELRMLERFGGKN 257
           F V    G GG+G VY  R+ + G + A+KC           +    NE  ML      +
Sbjct: 6   FSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGD 65

Query: 258 --FIIKYEGCFKCGDSDCFVLEHVKH-DRPEVLKKE--IDLSQLQWYGYCLFRALASLHK 312
             FI+     F   D   F+L+ +   D    L +      + +++Y   +   L  +H 
Sbjct: 66  CPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHN 125

Query: 313 QGIVHRDVKPGNFLF-SCKAVKGYLIDFNLA 342
           + +V+RD+KP N L      V+  + D  LA
Sbjct: 126 RFVVYRDLKPANILLDEHGHVR--ISDLGLA 154

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (164), Expect = 1e-12
 Identities = 40/211 (18%), Positives = 66/211 (31%), Gaps = 58/211 (27%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTK 555
           +H+  +             DL    ILL    H   V I    L  +  +KK     GT 
Sbjct: 123 MHNRFVV----------YRDLKPANILLDEHGH---VRISDLGLACDFSKKKPHASVGTH 169

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEV 615
           G+ APEVL +        D +S G  L  L+ G +PF     ++  +I +          
Sbjct: 170 GYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDR---------- 219

Query: 616 AKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL 675
                                          +T   +  +     L  L++  L  +   
Sbjct: 220 -----------------------------MTLTMAVELPDSFSPELRSLLEGLLQRDVNR 250

Query: 676 RIS-----AEDALKHEFFAPCH-EMLRKQKL 700
           R+      A++  +  FF     +M+  QK 
Sbjct: 251 RLGCLGRGAQEVKESPFFRSLDWQMVFLQKY 281

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (234), Expect = 1e-21
 Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 10/172 (5%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-----PHANASKHYVSNELRMLERFGG 255
           E FI+ +  G G +G V+ A  K      AIK         +        E R+L     
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 256 KNFIIKYEGCFKCGDSDCFVLEHVKH-DRPEVLKKE--IDLSQLQWYGYCLFRALASLHK 312
             F+      F+  ++  FV+E++   D    ++     DLS+  +Y   +   L  LH 
Sbjct: 62  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHS 121

Query: 313 QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
           +GIV+RD+K  N L         + DF +      G     T  GT  Y+ P
Sbjct: 122 KGIVYRDLKLDNILLDKDGHI-KIADFGMCKENMLGDAKTNTFCGTPDYIAP 172

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 4e-14
 Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 45/159 (28%)

Query: 544 KQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDI 603
              K     GT  + APE+L   Q     +D WS GV L  ++IG++PF G  E+ +   
Sbjct: 156 GDAKTNTFCGTPDYIAPEIL-LGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEEL--- 211

Query: 604 AKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFD 663
                                                  +  +    P +   +     D
Sbjct: 212 ---------------------------------------FHSIRMDNPFYPRWLEKEAKD 232

Query: 664 LVDKCLTVNPRLRISAEDALK-HEFFAPCH-EMLRKQKL 700
           L+ K     P  R+     ++ H  F   + E L ++++
Sbjct: 233 LLVKLFVREPEKRLGVRGDIRQHPLFREINWEELERKEI 271

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 2e-21
 Identities = 41/175 (23%), Positives = 68/175 (38%), Gaps = 17/175 (9%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS---NELRMLERFGGKNFI 259
           +      G G YG V  A    +   VAIK       + Y      E+++L RF  +N I
Sbjct: 10  YTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHEN-I 68

Query: 260 IKYEGCFKCGDSD-----CFVLEHVKHDRPEVLKKE-IDLSQLQWYGYCLFRALASLHKQ 313
           I      +    +       V   +  D  ++LK + +    + ++ Y + R L  +H  
Sbjct: 69  IGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSA 128

Query: 314 GIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQAT----LPGTKYVPP 363
            ++HRD+KP N L +    +K  + DF LA V      +       +    Y  P
Sbjct: 129 NVLHRDLKPSNLLLNTTCDLK--ICDFGLARVADPDHDHTGFLTEYVATRWYRAP 181

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (211), Expect = 1e-18
 Identities = 47/202 (23%), Positives = 72/202 (35%), Gaps = 25/202 (12%)

Query: 495 PLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHP--VPVLIIFYLLLGNGKQKKDGPCA 552
            +HS  +             DL    +LL T          +       +          
Sbjct: 124 YIHSANVLH----------RDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYV 173

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSED 611
            T+ +RAPE++  S+     +DIWS G  L  ++  R  F G      +  I  + GS  
Sbjct: 174 ATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 233

Query: 612 LWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV 671
             ++  + N ++          SLP  N   W +L            S   DL+DK LT 
Sbjct: 234 QEDLNCIINLKARNYL-----LSLPHKNKVPWNRLFPN-------ADSKALDLLDKMLTF 281

Query: 672 NPRLRISAEDALKHEFFAPCHE 693
           NP  RI  E AL H +    ++
Sbjct: 282 NPHKRIEVEQALAHPYLEQYYD 303

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.1 bits (233), Expect = 2e-21
 Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 10/207 (4%)

Query: 164 AKEKKQGKRDQISRIMALKATGNHNDDQTNAKVLPNFESFIVEEEEGSGGYGTVYRARRK 223
           A  KK  +++ +   +A          +T ++     + F   +  G+G +G V   + K
Sbjct: 4   AAAKKGSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHK 63

Query: 224 NDGTVVAIKCPHANASK-----HYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH 278
             G   A+K              +  NE R+L+       +          +    +   
Sbjct: 64  ESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYV 123

Query: 279 VKHDRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYL 336
              +    L++         ++Y   +      LH   +++RD+KP N L   +     +
Sbjct: 124 AGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGY-IQV 182

Query: 337 IDFNLAMVGFDGSFNQATLPGTKYVPP 363
            DF  A      ++     P    + P
Sbjct: 183 TDFGFAKRVKGRTWTLCGTPE--ALAP 207

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.6 bits (120), Expect = 4e-07
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 49/154 (31%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT    APE++  S+     +D W+ GV +  +  G  PFF D    I +          
Sbjct: 200 GTPEALAPEII-LSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEK--------- 249

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
                                            +++ +  F     S L DL+   L V+
Sbjct: 250 ---------------------------------IVSGKVRFPSHFSSDLKDLLRNLLQVD 276

Query: 673 P-----RLRISAEDALKHEFFAPC-HEMLRKQKL 700
                  L+    D   H++FA      + ++K+
Sbjct: 277 LTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKV 310

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (228), Expect = 3e-21
 Identities = 27/173 (15%), Positives = 64/173 (36%), Gaps = 12/173 (6%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-PHANASKHYVSNELRMLERFGGKN 257
             E+  + E  G+G +G V+        T VA+K     + S      E  ++++   + 
Sbjct: 11  PRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR 69

Query: 258 FIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQW-----YGYCLFRALASLHK 312
            +++        +    + E++++       K     +L           +   +A + +
Sbjct: 70  -LVRLYAVV-TQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127

Query: 313 QGIVHRDVKPGNFLFSCKAVKGYLIDFNLA-MVGFDGSFNQATLPGT-KYVPP 363
           +  +HRD++  N L     +   + DF LA ++  +    +       K+  P
Sbjct: 128 RNYIHRDLRAANILV-SDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAP 179

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 27/195 (13%), Positives = 49/195 (25%), Gaps = 53/195 (27%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTK 555
           +                  DL    IL+   L           L+ + +           
Sbjct: 125 IEERNYIH----------RDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPI 174

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEV 615
            + APE +        K D+WS G+ L  ++      +                      
Sbjct: 175 KWTAPEAI-NYGTFTIKSDVWSFGILLTEIVTHGRIPYPG-------------------- 213

Query: 616 AKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL 675
                   + PE +   +    +  P+ C             P  L+ L+  C    P  
Sbjct: 214 -------MTNPEVIQNLERGYRMVRPDNC-------------PEELYQLMRLCWKERPED 253

Query: 676 RISAEDALK--HEFF 688
           R + +       +FF
Sbjct: 254 RPTFDYLRSVLEDFF 268

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (227), Expect = 5e-21
 Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 10/162 (6%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH-----YVSNELRMLERFGG 255
           E F   +  G G + TV  AR        AIK              YV+ E  ++ R   
Sbjct: 8   EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 67

Query: 256 KNFIIKYEGCFKCGDSDCFVLEHVKHD---RPEVLKKEIDLSQLQWYGYCLFRALASLHK 312
               +K    F+  +   F L + K+    +        D +  ++Y   +  AL  LH 
Sbjct: 68  PF-FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHG 126

Query: 313 QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQAT 354
           +GI+HRD+KP N L +       + DF  A V    S     
Sbjct: 127 KGIIHRDLKPENILLNEDM-HIQITDFGTAKVLSPESKQARA 167

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 2e-13
 Identities = 34/165 (20%), Positives = 50/165 (30%), Gaps = 50/165 (30%)

Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIK 601
             KQ +     GT  + +PE+L   +      D+W+ G  +  L+ G  PF    E  I 
Sbjct: 161 ESKQARANSFVGTAQYVSPELL-TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIF 219

Query: 602 DIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL 661
                                                      K+I    DF E      
Sbjct: 220 Q------------------------------------------KIIKLEYDFPEKFFPKA 237

Query: 662 FDLVDKCLTVNPRLRISAEDA------LKHEFFAPCH-EMLRKQK 699
            DLV+K L ++   R+  E+         H FF     E L +Q 
Sbjct: 238 RDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWENLHQQT 282

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (223), Expect = 1e-20
 Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHY--------VSNELRMLERFG 254
           + V    GSGG+G+VY   R +D   VAIK    +    +        V  E+ +L++  
Sbjct: 6   YQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVS 65

Query: 255 GKN-FIIKYEGCFKCGDSDCFVLEHVK--HDRPEVLKKE--IDLSQLQWYGYCLFRALAS 309
                +I+    F+  DS   +LE  +   D  + + +   +     + + + +  A+  
Sbjct: 66  SGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRH 125

Query: 310 LHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
            H  G++HRD+K  N L      +  LIDF    +  D  +      GT+ Y PP
Sbjct: 126 CHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT--DFDGTRVYSPP 178

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 1e-15
 Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 51/152 (33%)

Query: 540 LGNGKQKKDGPC---AGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP 596
            G+G   KD       GT+ +  PE +   ++ G    +WS G+ L  ++ G  PF  D 
Sbjct: 155 FGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE 214

Query: 597 EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEV 656
           E                                                +I  +  F + 
Sbjct: 215 E------------------------------------------------IIRGQVFFRQR 226

Query: 657 IPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
           + S    L+  CL + P  R + E+   H + 
Sbjct: 227 VSSECQHLIRWCLALRPSDRPTFEEIQNHPWM 258

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 2e-20
 Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 10/171 (5%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS----NELRMLERFGGK 256
           + +   E+ G G YGTV++A+ +    +VA+K    +     V      E+ +L+    K
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDR---PEVLKKEIDLSQLQWYGYCLFRALASLHKQ 313
           N I++             V E    D     +    ++D   ++ + + L + L   H +
Sbjct: 62  N-IVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR 120

Query: 314 GIVHRDVKPGNFLFSCKAVKGYLIDFNLA-MVGFDGSFNQATLPGTKYVPP 363
            ++HRD+KP N L +       L +F LA   G       A +    Y PP
Sbjct: 121 NVLHRDLKPQNLLINRNGEL-KLANFGLARAFGIPVRCYSAEVVTLWYRPP 170

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 6e-18
 Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 16/153 (10%)

Query: 542 NGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG--DPEQN 599
               +       T  +R P+VLF ++     +D+WSAG     L     P F   D +  
Sbjct: 152 GIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQ 211

Query: 600 IKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS 659
           +K I +L G+                 E   +   LP           T   + +  + +
Sbjct: 212 LKRIFRLLGTPT--------------EEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNA 257

Query: 660 SLFDLVDKCLTVNPRLRISAEDALKHEFFAPCH 692
           +  DL+   L  NP  RISAE+AL+H +F+   
Sbjct: 258 TGRDLLQNLLKCNPVQRISAEEALQHPYFSDFC 290

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.9 bits (225), Expect = 2e-20
 Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 16/180 (8%)

Query: 195 KVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFG 254
            ++ +++  +  +  G G  G V +   K      A+K             E+ +  R  
Sbjct: 8   AIIDDYK--VTSQVLGLGINGKVLQIFNKRTQEKFALKMLQ---DCPKARREVELHWRAS 62

Query: 255 GKNFIIKYEGCFKCGDSD----CFVLEHVKH-DRPEVLKKE----IDLSQLQWYGYCLFR 305
               I++    ++   +       V+E +   +    ++          +       +  
Sbjct: 63  QCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGE 122

Query: 306 ALASLHKQGIVHRDVKPGNFLFSCKAVKGY--LIDFNLAMVGFDGSFNQATLPGTKYVPP 363
           A+  LH   I HRDVKP N L++ K       L DF  A      +          YV P
Sbjct: 123 AIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAP 182

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (177), Expect = 3e-14
 Identities = 37/194 (19%), Positives = 60/194 (30%), Gaps = 46/194 (23%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHP-VPVLIIFYLLLGNGKQKKDGPCAGT 554
           LHS  IA            D+    +L  +K    +  L  F                 T
Sbjct: 127 LHSINIA----------HRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYT 176

Query: 555 KGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWE 614
             + APEVL   +      D+WS GV +  L+ G  PF+ +    I    K         
Sbjct: 177 PYYVAPEVL-GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMK--------- 226

Query: 615 VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR 674
             ++   +  FP              PEW +           +   +  L+   L   P 
Sbjct: 227 -TRIRMGQYEFPN-------------PEWSE-----------VSEEVKMLIRNLLKTEPT 261

Query: 675 LRISAEDALKHEFF 688
            R++  + + H + 
Sbjct: 262 QRMTITEFMNHPWI 275

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (223), Expect = 2e-20
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 14/168 (8%)

Query: 522 LLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVT 581
           LLL +   + +             +       T+ +RAPE+LF ++  G  +D+W+ G  
Sbjct: 131 LLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCI 190

Query: 582 LLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLP 641
           L  L++      GD + +               + ++     +  E+ +      P  + 
Sbjct: 191 LAELLLRVPFLPGDSDLDQ--------------LTRIFETLGTPTEEQWPDMCSLPDYVT 236

Query: 642 EWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFA 689
                              L DL+      NP  RI+A  ALK ++F+
Sbjct: 237 FKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFS 284

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 6e-18
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVS----NELRMLERFGGKNFIIKY 262
           G G + TVY+AR KN   +VAIK     H + +K  ++     E+++L+     N II  
Sbjct: 7   GEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPN-IIGL 65

Query: 263 EGCFKCGDSDCFVLEHVKHDRPEVL---KKEIDLSQLQWYGYCLFRALASLHKQGIVHRD 319
              F    +   V + ++ D   ++      +  S ++ Y     + L  LH+  I+HRD
Sbjct: 66  LDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRD 125

Query: 320 VKPGNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTK-YVPP 363
           +KP N L      +K  L DF LA      +        T+ Y  P
Sbjct: 126 LKPNNLLLDENGVLK--LADFGLAKSFGSPNRAYTHQVVTRWYRAP 169

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 3e-20
 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 17/176 (9%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFG 254
                 V +  GSG +GTVY+ +   D   VA+K  +  A          NE+ +L +  
Sbjct: 6   PDGQITVGQRIGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 62

Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
             N I+ + G +        V +  +    +    +++ + ++ +L        + +  L
Sbjct: 63  HVN-ILLFMG-YSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYL 120

Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ--ATLPGT-KYVPP 363
           H + I+HRD+K  N           + DF LA V    S +     L G+  ++ P
Sbjct: 121 HAKSIIHRDLKSNNIFLHEDLT-VKIGDFGLATVKSRWSGSHQFEQLSGSILWMAP 175

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 38/136 (27%)

Query: 552 AGTKGFRAPEVLFRSQHQ--GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGS 609
           +G+  + APEV+          + D+++ G+ L  LM G+ P+     +           
Sbjct: 167 SGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR----------- 215

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
               ++  +  R    P+                              P ++  L+ +CL
Sbjct: 216 ---DQIIFMVGRGYLSPD----------------------LSKVRSNCPKAMKRLMAECL 250

Query: 670 TVNPRLRISAEDALKH 685
                 R      L  
Sbjct: 251 KKKRDERPLFPQILAS 266

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 3e-20
 Identities = 43/171 (25%), Positives = 66/171 (38%), Gaps = 9/171 (5%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS----NELRMLERFGGK 256
           E+F   E+ G G YG VY+AR K  G VVA+K    +     V      E+ +L+     
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHK 312
           N I+K        +    V E +  D  + +       I L  ++ Y + L + LA  H 
Sbjct: 62  N-IVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 120

Query: 313 QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
             ++HRD+KP N L + +              G         +    Y  P
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAP 171

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 1e-18
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 15/158 (9%)

Query: 544 KQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD-PEQNIKD 602
             +       T  +RAPE+L   ++    +DIWS G     ++  R  F GD     +  
Sbjct: 155 PVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFR 214

Query: 603 IAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF 662
           I +  G+ D      + +     P            + P+W +        +  +     
Sbjct: 215 IFRTLGTPDEVVWPGVTSMPDYKP------------SFPKWAR--QDFSKVVPPLDEDGR 260

Query: 663 DLVDKCLTVNPRLRISAEDALKHEFFAPCHEMLRKQKL 700
            L+ + L  +P  RISA+ AL H FF    + +   +L
Sbjct: 261 SLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL 298

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (222), Expect = 5e-20
 Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 13/160 (8%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNI-KDIAKLRGS 609
              T+ +RAPEV+         +DIWS G  +  ++ G+T F G    +  K+I K+ G+
Sbjct: 178 YVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGT 237

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
                V +L + E+         K LP +   ++  ++T              +L++K L
Sbjct: 238 PPAEFVQRLQSDEAKNYM-----KGLPELEKKDFASILTN-------ASPLAVNLLEKML 285

Query: 670 TVNPRLRISAEDALKHEFFAPCHEMLRKQKLLRQGSSIDN 709
            ++   R++A +AL H +F   H+   + ++ +   S D+
Sbjct: 286 VLDAEQRVTAGEALAHPYFESLHDTEDEPQVQKYDDSFDD 325

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (205), Expect = 7e-18
 Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 12/150 (8%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASK----HYVSNELRMLERFGGK 256
             +   +  GSG YG V  A     G  VAIK  +              ELR+L+    +
Sbjct: 18  AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHE 77

Query: 257 NFIIKYEGCFKCGDSD------CFVLEHVKHDRPEVLKKE-IDLSQLQWYGYCLFRALAS 309
           N +I     F   ++         V+  +  D  +++K E +   ++Q+  Y + + L  
Sbjct: 78  N-VIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRY 136

Query: 310 LHKQGIVHRDVKPGNFLFSCKAVKGYLIDF 339
           +H  GI+HRD+KPGN   +       L   
Sbjct: 137 IHAAGIIHRDLKPGNLAVNEDCELKILDFG 166

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.4 bits (221), Expect = 6e-20
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 14/172 (8%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH-----YVSNELRMLERFGG 255
           + F +    G+G +G V+  R +++G   A+K              + ++E  ML     
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 256 KNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVL---KKEIDLSQLQWYGYCLFRALASLHK 312
              II+  G F+       ++++++      L    +       ++Y   +  AL  LH 
Sbjct: 64  PF-IIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHS 122

Query: 313 QGIVHRDVKPGNFLF-SCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
           + I++RD+KP N L      +K  + DF  A    D ++     P   Y+ P
Sbjct: 123 KDIIYRDLKPENILLDKNGHIK--ITDFGFAKYVPDVTYTLCGTPD--YIAP 170

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.8 bits (152), Expect = 3e-11
 Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 49/154 (31%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT  + APEV+    +    +D WS G+ +  ++ G TPF+        +          
Sbjct: 163 GTPDYIAPEVVSTKPY-NKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYE---------- 211

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
                                           K++     F       + DL+ + +T +
Sbjct: 212 --------------------------------KILNAELRFPPFFNEDVKDLLSRLITRD 239

Query: 673 PRLRI-----SAEDALKHEFFAP-CHEMLRKQKL 700
              R+       ED   H +F     E L  + +
Sbjct: 240 LSQRLGNLQNGTEDVKNHPWFKEVVWEKLLSRNI 273

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (217), Expect = 6e-20
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 7/135 (5%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNF 258
           N +   + +  G G +G V     +  G  VA+KC   +A+      E  ++ +    N 
Sbjct: 5   NMKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNL 62

Query: 259 IIKYEGCFKCGDSDCFVLEHVKH-DRPEVLKKE----IDLSQLQWYGYCLFRALASLHKQ 313
           +       +       V E++      + L+      +    L  +   +  A+  L   
Sbjct: 63  VQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN 122

Query: 314 GIVHRDVKPGNFLFS 328
             VHRD+   N L S
Sbjct: 123 NFVHRDLAARNVLVS 137

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 25/191 (13%), Positives = 53/191 (27%), Gaps = 57/191 (29%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTK 555
           L  N               DL+   +L+                  + +           
Sbjct: 119 LEGNNFV----------HRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT----GKLPV 164

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM-IGRTPFFGDPEQNIKDIAKLRGSEDLWE 614
            + APE L   +    K D+WS G+ L  +   GR P+   P +++              
Sbjct: 165 KWTAPEALREKKF-STKSDVWSFGILLWEIYSFGRVPYPRIPLKDV-------------- 209

Query: 615 VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR 674
           V ++                               + D  +  P ++++++  C  ++  
Sbjct: 210 VPRVEKGY---------------------------KMDAPDGCPPAVYEVMKNCWHLDAA 242

Query: 675 LRISAEDALKH 685
           +R S     + 
Sbjct: 243 MRPSFLQLREQ 253

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (220), Expect = 6e-20
 Identities = 40/203 (19%), Positives = 65/203 (32%), Gaps = 26/203 (12%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGT--VVAIKCPHANASKHYVS---NELRMLERF 253
           ++     ++  G G +G V +AR K DG     AIK     ASK        EL +L + 
Sbjct: 8   DWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKL 67

Query: 254 GGKNFIIKYEGCFKCGDSDCFVLEHVKH-------------------DRPEVLKKEIDLS 294
           G    II   G  +        +E+  H                            +   
Sbjct: 68  GHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQ 127

Query: 295 QLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQAT 354
           QL  +   + R +  L ++  +HRD+   N L     V   + DF L+            
Sbjct: 128 QLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYV-AKIADFGLSRGQEVYVKKTMG 186

Query: 355 LPGTKYVPP-VNGRKVPSAKSLV 376
               +++        V +  S V
Sbjct: 187 RLPVRWMAIESLNYSVYTTNSDV 209

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 4e-09
 Identities = 33/204 (16%), Positives = 55/204 (26%), Gaps = 54/204 (26%)

Query: 500 GIAVAGAGLMNKG--PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGF 557
            +A     L  K     DL+   IL+    + V  +  F L  G     K         +
Sbjct: 135 DVARGMDYLSQKQFIHRDLAARNILVGE--NYVAKIADFGLSRGQEVYVKKTMGRLPVRW 192

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAK 617
            A E L          D+WS GV L  ++      +                        
Sbjct: 193 MAIESL-NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG---------------------- 229

Query: 618 LHNRESSFPEDLYAAKSLPPINLPEWCKLITK--RPDFLEVIPSSLFDLVDKCLTVNPRL 675
                               +   E  + + +  R +        ++DL+ +C    P  
Sbjct: 230 --------------------MTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYE 269

Query: 676 RISAEDALKHEFFAPCHEMLRKQK 699
           R S    L        + ML ++K
Sbjct: 270 RPSFAQILVS-----LNRMLEERK 288

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (215), Expect = 1e-19
 Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 23/183 (12%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGK 256
           E + V    G+G YG   + RRK+DG ++  K         A K  + +E+ +L      
Sbjct: 4   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 63

Query: 257 NFIIKYEGCFKCGDSD--CFVLEHVKH-------DRPEVLKKEIDLSQLQWYGYCLFRAL 307
           N I++Y        +     V+E+ +         +    ++ +D   +      L  AL
Sbjct: 64  N-IVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLAL 122

Query: 308 ASLHKQG-----IVHRDVKPGNFLFSCK-AVKGYLIDFNLA-MVGFDGSFNQATLPGTKY 360
              H++      ++HRD+KP N     K  VK  L DF LA ++  D SF +A +    Y
Sbjct: 123 KECHRRSDGGHTVLHRDLKPANVFLDGKQNVK--LGDFGLARILNHDTSFAKAFVGTPYY 180

Query: 361 VPP 363
           + P
Sbjct: 181 MSP 183

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (167), Expect = 3e-13
 Identities = 21/134 (15%), Positives = 38/134 (28%), Gaps = 42/134 (31%)

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLW 613
           T  + +PE + R  +   K DIWS G  L  L     PF    ++ +             
Sbjct: 177 TPYYMSPEQMNRMSY-NEKSDIWSLGCLLYELCALMPPFTAFSQKEL------------- 222

Query: 614 EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNP 673
                              +      +P                   L +++ + L +  
Sbjct: 223 ---------------AGKIREGKFRRIPYRY-------------SDELNEIITRMLNLKD 254

Query: 674 RLRISAEDALKHEF 687
             R S E+ L++  
Sbjct: 255 YHRPSVEEILENPL 268

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (217), Expect = 2e-19
 Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 30/185 (16%)

Query: 199 NFESFIVEEEEGSGGYGTVYRAR-----RKNDGTVVAIKCPHANAS---KHYVSNELRML 250
                   +  G+G +G V  A      + +    VA+K    +A    +  + +EL++L
Sbjct: 21  PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVL 80

Query: 251 ERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH---------------------DRPEVLKK 289
              G    I+   G    G     + E+  +                        E  + 
Sbjct: 81  SYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDEL 140

Query: 290 EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS 349
            +DL  L  + Y + + +A L  +  +HRD+   N L         + DF LA    + S
Sbjct: 141 ALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILL-THGRITKICDFGLARDIKNDS 199

Query: 350 FNQAT 354
                
Sbjct: 200 NYVVK 204

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 40/147 (27%)

Query: 538 LLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPE 597
            +  +      G       + APE +  +     + D+WS G+ L  L    +  +    
Sbjct: 194 DIKNDSNYVVKGNARLPVKWMAPESI-FNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP 252

Query: 598 QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVI 657
            + K    ++                                          R    E  
Sbjct: 253 VDSKFYKMIKEG---------------------------------------FRMLSPEHA 273

Query: 658 PSSLFDLVDKCLTVNPRLRISAEDALK 684
           P+ ++D++  C   +P  R + +  ++
Sbjct: 274 PAEMYDIMKTCWDADPLKRPTFKQIVQ 300

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 87.2 bits (215), Expect = 2e-19
 Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 11/171 (6%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS----NELRMLERFGGK 256
           E +   E+ G G YG VY+A+    G   A+K          +      E+ +L+     
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKELKHS 60

Query: 257 NFIIKYEGCFKCGDSDCFVLEHVKHDRPEVL---KKEIDLSQLQWYGYCLFRALASLHKQ 313
           N I+K             V EH+  D  ++L   +  ++    + +   L   +A  H +
Sbjct: 61  N-IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR 119

Query: 314 GIVHRDVKPGNFLFSCKAVKGYLIDFNLA-MVGFDGSFNQATLPGTKYVPP 363
            ++HRD+KP N L + +     + DF LA   G         +    Y  P
Sbjct: 120 RVLHRDLKPQNLLINREGE-LKIADFGLARAFGIPVRKYTHEIVTLWYRAP 169

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 80.3 bits (197), Expect = 3e-17
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 15/134 (11%)

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-IKDIAKLRGSEDLWE 614
            +RAP+VL  S+     +DIWS G     ++ G   F G  E + +  I ++ G+ +   
Sbjct: 165 WYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPN--- 221

Query: 615 VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR 674
                       ++      LP  +             FL+ +  S  DL+ K L ++P 
Sbjct: 222 -----------SKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPN 270

Query: 675 LRISAEDALKHEFF 688
            RI+A+ AL+H +F
Sbjct: 271 QRITAKQALEHAYF 284

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (215), Expect = 2e-19
 Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 17/180 (9%)

Query: 198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPH----ANASKHYVSNELRMLERF 253
            +      + E G G + TVY+         VA           + +     E  ML+  
Sbjct: 6   NDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL 65

Query: 254 GGKNFIIKYEGCFKCGDSD----CFVLEHVKHDRPEVL---KKEIDLSQLQWYGYCLFRA 306
              N  +++   ++           V E +     +      K + +  L+ +   + + 
Sbjct: 66  QHPNI-VRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKG 124

Query: 307 LASLHKQG--IVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           L  LH +   I+HRD+K  N   +       + D  LA +    SF +  + GT +++ P
Sbjct: 125 LQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL-KRASFAK-AVIGTPEFMAP 182

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 8e-16
 Identities = 23/167 (13%), Positives = 48/167 (28%), Gaps = 42/167 (25%)

Query: 522 LLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVT 581
           + +T       +    L              GT  F APE+    +     +D+++ G+ 
Sbjct: 145 IFITGPTGSVKIGDLGLATLKRASFAKAVI-GTPEFMAPEMY--EEKYDESVDVYAFGMC 201

Query: 582 LLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLP 641
           +L +     P+                   ++       + +SF +              
Sbjct: 202 MLEMATSEYPYSECQNA-----------AQIYRRVTSGVKPASFDKV------------- 237

Query: 642 EWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
                              + ++++ C+  N   R S +D L H FF
Sbjct: 238 ---------------AIPEVKEIIEGCIRQNKDERYSIKDLLNHAFF 269

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.1 bits (215), Expect = 2e-19
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 13/188 (6%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-PHANASKHYVSNELRMLERFGGKN 257
                 ++ + G G YG VY    K     VA+K              E  +++     N
Sbjct: 15  ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN 74

Query: 258 FIIKYEGCFKCGDSDCFVLEHVKHDRPEVL-----KKEIDLSQLQWYGYCLFRALASLHK 312
            +++  G          + E + +           ++E+    L +    +  A+  L K
Sbjct: 75  -LVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK 133

Query: 313 QGIVHRDVKPGNFLF-SCKAVKGYLIDFNLAMVGFDGSFNQATLPGTK---YVPPVNGRK 368
           +  +HRD+   N L      VK  + DF L+ +    ++              P      
Sbjct: 134 KNFIHRDLAARNCLVGENHLVK--VADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYN 191

Query: 369 VPSAKSLV 376
             S KS V
Sbjct: 192 KFSIKSDV 199

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 28/191 (14%), Positives = 47/191 (24%), Gaps = 51/191 (26%)

Query: 494 MPLHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAG 553
             L                  DL+    L+               L+             
Sbjct: 129 EYLEKKNFI----------HRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 178

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLW 613
              + APE L        K D+W+ GV L  +       +                 DL 
Sbjct: 179 PIKWTAPESL-AYNKFSIKSDVWAFGVLLWEIATYGMSPYPG--------------IDLS 223

Query: 614 EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNP 673
           +V +L  ++                           R +  E  P  +++L+  C   NP
Sbjct: 224 QVYELLEKD--------------------------YRMERPEGCPEKVYELMRACWQWNP 257

Query: 674 RLRISAEDALK 684
             R S  +  +
Sbjct: 258 SDRPSFAEIHQ 268

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.7 bits (214), Expect = 3e-19
 Identities = 37/177 (20%), Positives = 65/177 (36%), Gaps = 15/177 (8%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC--------PHANASKHYVSNELRMLER 252
           + +   EE GSG +  V + R K+ G   A K              S+  +  E+ +L+ 
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 69

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKHD---RPEVLKKEIDLSQLQWYGYCLFRALAS 309
               N +I     ++       +LE V           K+ +   +   +   +   +  
Sbjct: 70  IQHPN-VITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYY 128

Query: 310 LHKQGIVHRDVKPGNFLFSCKAVKG---YLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
           LH   I H D+KP N +   + V      +IDF LA     G+  +      ++V P
Sbjct: 129 LHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAP 185

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 6e-17
 Identities = 39/180 (21%), Positives = 66/180 (36%), Gaps = 41/180 (22%)

Query: 513 PSDLSDLQILLLTKLHPVPVLII--FYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQG 570
             DL    I+LL +  P P + I  F L        +     GT  F APE++   +  G
Sbjct: 136 HFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIV-NYEPLG 194

Query: 571 PKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLY 630
            + D+WS GV    L+ G +PF GD +Q                +A +      F     
Sbjct: 195 LEADMWSIGVITYILLSGASPFLGDTKQET--------------LANVSAVNYEFE---- 236

Query: 631 AAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAP 690
                                ++     +   D + + L  +P+ R++ +D+L+H +  P
Sbjct: 237 --------------------DEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKP 276

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (213), Expect = 3e-19
 Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 13/152 (8%)

Query: 201 ESFIVEEEE-GSGGYGTVYRA--RRKNDGTVVAIKCPHANASKHYVS---NELRMLERFG 254
           ++ ++ + E G G +G+V +   R +     VAIK       K        E +++ +  
Sbjct: 8   DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLD 67

Query: 255 GKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASL 310
               I++  G  +  ++   V+E       H      ++EI +S +    + +   +  L
Sbjct: 68  NPY-IVRLIGVCQ-AEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYL 125

Query: 311 HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA 342
            ++  VHRD+   N L   +     + DF L+
Sbjct: 126 EEKNFVHRDLAARNVLLVNRHY-AKISDFGLS 156

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 3e-07
 Identities = 19/153 (12%), Positives = 40/153 (26%), Gaps = 46/153 (30%)

Query: 541 GNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM-IGRTPFFGDPEQN 599
            +              + APE +   +    + D+WS GVT+   +  G+ P+       
Sbjct: 162 DDSYYTARSAGKWPLKWYAPECI-NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE 220

Query: 600 IKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS 659
           +              +A +                              KR +     P 
Sbjct: 221 V--------------MAFIEQG---------------------------KRMECPPECPP 239

Query: 660 SLFDLVDKCLTVNPRLRISAED---ALKHEFFA 689
            L+ L+  C       R         ++  +++
Sbjct: 240 ELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS 272

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 4e-19
 Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 10/172 (5%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC-PHANASKHYVSNELRMLERFGGKN 257
           + +     +E G+G +G V   + +     VAIK     + S+     E +++     + 
Sbjct: 2   DPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEK 60

Query: 258 FIIKYEGCFKCGDSDCFVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQ 313
            +++  G          + E++ +    +    ++      QL      +  A+  L  +
Sbjct: 61  -LVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK 119

Query: 314 GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQAT-LPGT-KYVPP 363
             +HRD+   N L + + V   + DF L+    D  +  +       ++ PP
Sbjct: 120 QFLHRDLAARNCLVNDQGV-VKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP 170

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 4e-08
 Identities = 26/191 (13%), Positives = 53/191 (27%), Gaps = 49/191 (25%)

Query: 500 GIAVAGAGLMNKG--PSDLSDLQILLLTKLHPVPVLIIFYL--LLGNGKQKKDGPCAGTK 555
            +  A   L +K     DL+    L+  +      +  F L   + + +           
Sbjct: 108 DVCEAMEYLESKQFLHRDLAARNCLVNDQGVVK--VSDFGLSRYVLDDEYTSSVGSKFPV 165

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM-IGRTPFFGDPEQNIKDIAKLRGSEDLWE 614
            +  PEVL  S+    K DIW+ GV +  +  +G+ P+                      
Sbjct: 166 RWSPPEVLMYSKF-SSKSDIWAFGVLMWEIYSLGKMPYERFTNSET-----------AEH 213

Query: 615 VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR 674
           +A+                                R     +    ++ ++  C      
Sbjct: 214 IAQ------------------------------GLRLYRPHLASEKVYTIMYSCWHEKAD 243

Query: 675 LRISAEDALKH 685
            R + +  L +
Sbjct: 244 ERPTFKILLSN 254

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.0 bits (212), Expect = 6e-19
 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 12/176 (6%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDG---TVVAIKCPHANASKHYVS---NELRMLER 252
           +     +E+  G+G +G V     K  G     VAIK   +  ++       +E  ++ +
Sbjct: 24  DISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQ 83

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALA 308
           F   N +I  EG          + E +++   +   ++      + QL      +   + 
Sbjct: 84  FDHPN-VIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMK 142

Query: 309 SLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPPV 364
            L     VHRD+   N L +   V   + DF L+    D + +           P+
Sbjct: 143 YLADMNYVHRDLAARNILVNSNLV-CKVSDFGLSRFLEDDTSDPTYTSALGGKIPI 197

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 43/136 (31%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM-IGRTPFFGDPEQNIKDIAKLRGS 609
                 + APE + + +      D+WS G+ +  +M  G  P++    Q++ +  +    
Sbjct: 193 GKIPIRWTAPEAI-QYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQD-- 249

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
                                                   R       PS+L  L+  C 
Sbjct: 250 ---------------------------------------YRLPPPMDCPSALHQLMLDCW 270

Query: 670 TVNPRLRISAEDALKH 685
             +   R      +  
Sbjct: 271 QKDRNHRPKFGQIVNT 286

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.9 bits (212), Expect = 6e-19
 Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 11/172 (6%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC---PHANASKHYVSNELRMLERFGGKN 257
           + +   +  G+G +  V  A  K    +VAIKC         +  + NE+ +L +    N
Sbjct: 9   DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPN 68

Query: 258 FIIKYEGCFKCGDSDCFVLEHVKH-DRPEVLKKE--IDLSQLQWYGYCLFRALASLHKQG 314
            I+  +  ++ G     +++ V   +  + + ++            + +  A+  LH  G
Sbjct: 69  -IVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLG 127

Query: 315 IVHRDVKPGNFLFSCKAVKG--YLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
           IVHRD+KP N L+          + DF L+ +  D     +T  GT  YV P
Sbjct: 128 IVHRDLKPENLLYYSLDEDSKIMISDFGLSKM-EDPGSVLSTACGTPGYVAP 178

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.5 bits (180), Expect = 9e-15
 Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 39/137 (28%)

Query: 553 GTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDL 612
           GT G+ APEVL +  +    +D WS GV    L+ G  PF+ + +  +            
Sbjct: 171 GTPGYVAPEVLAQKPY-SKAVDCWSIGVIAYILLCGYPPFYDENDAKL------------ 217

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
               ++   E  F                           + + I  S  D +   +  +
Sbjct: 218 --FEQILKAEYEFD------------------------SPYWDDISDSAKDFIRHLMEKD 251

Query: 673 PRLRISAEDALKHEFFA 689
           P  R + E AL+H + A
Sbjct: 252 PEKRFTCEQALQHPWIA 268

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 1e-18
 Identities = 37/199 (18%), Positives = 60/199 (30%), Gaps = 37/199 (18%)

Query: 199 NFESFIVEEEEGSGGYGTVYRAR-----RKNDGTVVAIKCPHANASKHYVS---NELRML 250
             E+    +  GSG +G V  A      +      VA+K     A         +EL+M+
Sbjct: 35  PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMM 94

Query: 251 ERFGGKNFIIKYEGCFKCGDSDCFVLEHV--------------------------KHDRP 284
            + G    I+   G          + E+                           K    
Sbjct: 95  TQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEE 154

Query: 285 EVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV 344
           E     +    L  + Y + + +  L  +  VHRD+   N L +   V   + DF LA  
Sbjct: 155 EEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKV-VKICDFGLARD 213

Query: 345 GFDGSFNQATLPGTKYVPP 363
               S     + G   +P 
Sbjct: 214 IMSDS--NYVVRGNARLPV 230

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 21/149 (14%), Positives = 43/149 (28%), Gaps = 42/149 (28%)

Query: 538 LLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM-IGRTPFFGDP 596
            ++ +      G       + APE LF   +   K D+WS G+ L  +  +G  P+ G P
Sbjct: 213 DIMSDSNYVVRGNARLPVKWMAPESLFEGIY-TIKSDVWSYGILLWEIFSLGVNPYPGIP 271

Query: 597 EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEV 656
                         + +++ +                                + D    
Sbjct: 272 VD-----------ANFYKLIQNG-----------------------------FKMDQPFY 291

Query: 657 IPSSLFDLVDKCLTVNPRLRISAEDALKH 685
               ++ ++  C   + R R S  +    
Sbjct: 292 ATEEIYIIMQSCWAFDSRKRPSFPNLTSF 320

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.2 bits (212), Expect = 1e-18
 Identities = 41/225 (18%), Positives = 81/225 (36%), Gaps = 18/225 (8%)

Query: 501 IAVAGAGLMNKGPSDLSDLQ---ILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCA--GTK 555
           + +    +  +     +D++   +L+     P  ++ I    LGN     +       T+
Sbjct: 134 LLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTR 193

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQN-------IKDIAKLRG 608
            +R+PEVL      G   DIWS    +  L+ G   F  D   +       I  I +L G
Sbjct: 194 EYRSPEVL-LGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLG 252

Query: 609 SEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC 668
                 + +      +F       +++  +       ++T++  F +     + D +   
Sbjct: 253 ELP-SYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPM 311

Query: 669 LTVNPRLRISAEDALKHEFFAPCHEM----LRKQKLLRQGSSIDN 709
           L ++PR R  A   + H +      M    +  ++L   GS I  
Sbjct: 312 LQLDPRKRADAGGLVNHPWLKDTLGMEEIRVPDRELYGSGSDIPG 356

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.0 bits (188), Expect = 1e-15
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 20/170 (11%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERF-------- 253
           +I+  + G G + TV+ A+   + T VA+K    +        +E+++L+R         
Sbjct: 15  YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKE 74

Query: 254 --GGKNFIIKYEGCFKCGDSDCFVLEHVK--------HDRPEVLKKEIDLSQLQWYGYCL 303
              G N I+K    F     +   +  V             +   + I L  ++     L
Sbjct: 75  DSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQL 134

Query: 304 FRALASL-HKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ 352
              L  +  + GI+H D+KP N L         LI   +A +G    +++
Sbjct: 135 LLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDE 184

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 84.4 bits (208), Expect = 1e-18
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 16/178 (8%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH-----YVSNELRMLERFGG 255
           + + + E  G GG   V+ AR       VA+K   A+ ++          E +       
Sbjct: 7   DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNH 66

Query: 256 KNFIIKYEGCFKCGDSD----CFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALA 308
              I+      +           V+E+V       +      +   +         +AL 
Sbjct: 67  PA-IVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALN 125

Query: 309 SLHKQGIVHRDVKPGNFLFS--CKAVKGYLIDFNLAMVGFDGSFNQATLPGT-KYVPP 363
             H+ GI+HRDVKP N + S                    +     A + GT +Y+ P
Sbjct: 126 FSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSP 183

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 62.5 bits (151), Expect = 3e-11
 Identities = 25/155 (16%), Positives = 46/155 (29%), Gaps = 39/155 (25%)

Query: 533 LIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF 592
            I   +        +     GT  + +PE   R      + D++S G  L  ++ G  PF
Sbjct: 156 GIARAIADSGNSVTQTAAVIGTAQYLSPEQA-RGDSVDARSDVYSLGCVLYEVLTGEPPF 214

Query: 593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPD 652
            GD   ++            ++  +                 +PP    E          
Sbjct: 215 TGDSPVSV-----------AYQHVR--------------EDPIPPSARHEG--------- 240

Query: 653 FLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEF 687
               + + L  +V K L  NP  R      ++ + 
Sbjct: 241 ----LSADLDAVVLKALAKNPENRYQTAAEMRADL 271

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (210), Expect = 1e-18
 Identities = 41/176 (23%), Positives = 70/176 (39%), Gaps = 17/176 (9%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS----NELRMLERFGGKNF 258
           +    + G G +G V++AR +  G  VA+K       K         E+++L+    +N 
Sbjct: 12  YEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENV 71

Query: 259 IIKYEGC-------FKCGDSDCFVLEHVKHD---RPEVLKKEIDLSQLQWYGYCLFRALA 308
           +   E C        +C  S   V +  +HD       +  +  LS+++     L   L 
Sbjct: 72  VNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLY 131

Query: 309 SLHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
            +H+  I+HRD+K  N L +    +K  L DF LA        +Q      + V  
Sbjct: 132 YIHRNKILHRDMKAANVLITRDGVLK--LADFGLARAFSLAKNSQPNRYTNRVVTL 185

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (199), Expect = 3e-17
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 12/157 (7%)

Query: 533 LIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF 592
           L   + L  N +  +      T  +R PE+L   +  GP +D+W AG  +  +       
Sbjct: 163 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM 222

Query: 593 FGDPEQN-IKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRP 651
            G+ EQ+ +  I++L GS                  ++   +    + L +  K   K  
Sbjct: 223 QGNTEQHQLALISQLCGSIT-----------PEVWPNVDNYELYEKLELVKGQKRKVKDR 271

Query: 652 DFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFF 688
               V      DL+DK L ++P  RI ++DAL H+FF
Sbjct: 272 LKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFF 308

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (206), Expect = 2e-18
 Identities = 32/180 (17%), Positives = 52/180 (28%), Gaps = 18/180 (10%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRK---NDGTVVAIKCPHANASKH-----YVSNELRML 250
             +   + E+ G G +G V R            VA+KC   +             E+  +
Sbjct: 6   GEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAM 65

Query: 251 ERFGGKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRA 306
                +N +I+  G          V E        DR    +    L  L  Y   +   
Sbjct: 66  HSLDHRN-LIRLYGVVLTPPM-KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEG 123

Query: 307 LASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV---GFDGSFNQATLPGTKYVPP 363
           +  L  +  +HRD+   N L + + +     DF L        D    Q           
Sbjct: 124 MGYLESKRFIHRDLAARNLLLATRDLVKI-GDFGLMRALPQNDDHYVMQEHRKVPFAWCA 182

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 30/193 (15%), Positives = 50/193 (25%), Gaps = 54/193 (27%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQK--KDGPCAG 553
           L S                DL+   +LL T+             L               
Sbjct: 127 LESKRFI----------HRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKV 176

Query: 554 TKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM-IGRTPFFGDPEQNIKDIAKLRGSEDL 612
              + APE L +++      D W  GVTL  +   G+ P+ G     I           L
Sbjct: 177 PFAWCAPESL-KTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQI-----------L 224

Query: 613 WEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN 672
            ++ K                               +R    E  P  +++++ +C    
Sbjct: 225 HKIDKEG-----------------------------ERLPRPEDCPQDIYNVMVQCWAHK 255

Query: 673 PRLRISAEDALKH 685
           P  R +       
Sbjct: 256 PEDRPTFVALRDF 268

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (208), Expect = 3e-18
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 13/144 (9%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGS 609
              T+ +RAPE++    H    +DIWS G  +  L+ GRT F G D    +K I +L G+
Sbjct: 178 YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGT 237

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
                + K+ +  +         +SL  +    +  +                DL++K L
Sbjct: 238 PGAELLKKISSESARNYI-----QSLTQMPKMNFANVFIG-------ANPLAVDLLEKML 285

Query: 670 TVNPRLRISAEDALKHEFFAPCHE 693
            ++   RI+A  AL H +FA  H+
Sbjct: 286 VLDSDKRITAAQALAHAYFAQYHD 309

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 3e-17
 Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 13/154 (8%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKC----PHANASKHYVSNELRMLERFGGK 256
           E +      GSG YG+V  A     G  VA+K       +         ELR+L+    +
Sbjct: 18  ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHE 77

Query: 257 NFIIKYEGCFKCGDS-----DCFVLEHVKHDRPEVLKKE--IDLSQLQWYGYCLFRALAS 309
           N +I     F    S     D +++ H+       + K   +    +Q+  Y + R L  
Sbjct: 78  N-VIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKY 136

Query: 310 LHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM 343
           +H   I+HRD+KP N   +        +DF LA 
Sbjct: 137 IHSADIIHRDLKPSNLAVNEDCELKI-LDFGLAR 169

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 3e-18
 Identities = 38/169 (22%), Positives = 60/169 (35%), Gaps = 12/169 (7%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH-----YVSNELRMLERF 253
               F   +  G G +G V   R K  G   A+K              +   E R+L+  
Sbjct: 3   TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT 62

Query: 254 GGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE---IDLSQLQWYGYCLFRALASL 310
                +   +  F+  D  CFV+E+                   + ++YG  +  AL  L
Sbjct: 63  RHPF-LTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYL 121

Query: 311 HKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGT 358
           H + +V+RD+K  N +      +K  + DF L   G        T  GT
Sbjct: 122 HSRDVVYRDIKLENLMLDKDGHIK--ITDFGLCKEGISDGATMKTFCGT 168

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 2e-10
 Identities = 32/181 (17%), Positives = 58/181 (32%), Gaps = 51/181 (28%)

Query: 515 DLSDLQILLLTKLHPVPVLIIFYLL-LGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKL 573
           D+    ++L    H    +  F L   G           GT  + APEVL  + + G  +
Sbjct: 130 DIKLENLMLDKDGHIK--ITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDY-GRAV 186

Query: 574 DIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAK 633
           D W  GV +  +M GR PF+    + + +                               
Sbjct: 187 DWWGLGVVMYEMMCGRLPFYNQDHERLFE------------------------------- 215

Query: 634 SLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRIS-----AEDALKHEFF 688
                       ++ +   F   +      L+   L  +P+ R+      A++ ++H FF
Sbjct: 216 -----------LILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFF 264

Query: 689 A 689
            
Sbjct: 265 L 265

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (205), Expect = 4e-18
 Identities = 50/205 (24%), Positives = 73/205 (35%), Gaps = 34/205 (16%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTK 555
           LHS+ +             DL    IL+ +             +     Q        T 
Sbjct: 132 LHSHRVV----------HRDLKPQNILVTSSGQIKLADFGLARIYSF--QMALTSVVVTL 179

Query: 556 GFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG-DPEQNIKDIAKLRGSEDLWE 614
            +RAPEVL +S +    +D+WS G     +   +  F G      +  I  + G      
Sbjct: 180 WYRAPEVLLQSSY-ATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPG--- 235

Query: 615 VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR 674
             +   R+ + P   + +KS  PI              F+  I     DL+ KCLT NP 
Sbjct: 236 -EEDWPRDVALPRQAFHSKSAQPI------------EKFVTDIDELGKDLLLKCLTFNPA 282

Query: 675 LRISAEDALKHEFFAPCHEMLRKQK 699
            RISA  AL H +F      L + K
Sbjct: 283 KRISAYSALSHPYFQD----LERCK 303

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (203), Expect = 7e-18
 Identities = 47/180 (26%), Positives = 69/180 (38%), Gaps = 19/180 (10%)

Query: 201 ESFIVEEEEGSGGYGTVYRAR-RKNDGTVVAIKCPHANASKHYVS-------NELRMLER 252
           + +    E G G YG V++AR  KN G  VA+K       +  +          LR LE 
Sbjct: 7   QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLET 66

Query: 253 FGGKNFIIKYEGCFKCGDSD-----CFVLEHVKHDRPEVL----KKEIDLSQLQWYGYCL 303
           F   N +++         +D       V EHV  D    L    +  +    ++   + L
Sbjct: 67  FEHPN-VVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQL 125

Query: 304 FRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
            R L  LH   +VHRD+KP N L +       L DF LA +        + +    Y  P
Sbjct: 126 LRGLDFLHSHRVVHRDLKPQNILVTSSGQI-KLADFGLARIYSFQMALTSVVVTLWYRAP 184

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (204), Expect = 5e-18
 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 14/174 (8%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKN 257
             ES  +E + G G +G V+        T VAIK       S      E +++++   + 
Sbjct: 15  PRESLRLEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 73

Query: 258 FIIKYEGCFKCGDSDCFVLEHVKHDRPEVL-----KKEIDLSQLQWYGYCLFRALASLHK 312
            +++             V E++              K + L QL      +   +A + +
Sbjct: 74  -LVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER 131

Query: 313 QGIVHRDVKPGNFLFSCKA-VKGYLIDFNLA-MVGFDGSFNQATLPGT-KYVPP 363
              VHRD++  N L       K  + DF LA ++  +    +       K+  P
Sbjct: 132 MNYVHRDLRAANILVGENLVCK--VADFGLARLIEDNEYTARQGAKFPIKWTAP 183

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 25/153 (16%), Positives = 38/153 (24%), Gaps = 43/153 (28%)

Query: 539 LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ 598
           L+ + +            + APE     +    K D+WS G+ L  L       +     
Sbjct: 162 LIEDNEYTARQGAKFPIKWTAPEAALYGRF-TIKSDVWSFGILLTELTTKGRVPYPG--- 217

Query: 599 NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP 658
                          EV     R                            R       P
Sbjct: 218 -----------MVNREVLDQVERG--------------------------YRMPCPPECP 240

Query: 659 SSLFDLVDKCLTVNPRLRISAEDALK--HEFFA 689
            SL DL+ +C    P  R + E       ++F 
Sbjct: 241 ESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT 273

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 5e-18
 Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 12/173 (6%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKN 257
           +       +E GSG +G V+      +   VAIK     A S+     E  ++ +     
Sbjct: 3   DPSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK 61

Query: 258 FIIKYEGCFKCGDSDCFVLEHVKH----DRPEVLKKEIDLSQLQWYGYCLFRALASLHKQ 313
            +++  G        C V E ++H    D     +       L      +   +A L + 
Sbjct: 62  -LVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA 120

Query: 314 GIVHRDVKPGNFLF-SCKAVKGYLIDFNLAMVGFDGSFNQA-TLPGT-KYVPP 363
            ++HRD+   N L    + +K  + DF +     D  +  +       K+  P
Sbjct: 121 CVIHRDLAARNCLVGENQVIK--VSDFGMTRFVLDDQYTSSTGTKFPVKWASP 171

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (132), Expect = 8e-09
 Identities = 17/147 (11%), Positives = 40/147 (27%), Gaps = 41/147 (27%)

Query: 539 LLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQ 598
            + + +            + +PEV   S++   K D+WS GV +  +       + +   
Sbjct: 150 FVLDDQYTSSTGTKFPVKWASPEVFSFSRY-SSKSDVWSFGVLMWEVFSEGKIPYEN--- 205

Query: 599 NIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIP 658
                                    S  E +    +   +  P                 
Sbjct: 206 ------------------------RSNSEVVEDISTGFRLYKPRLA-------------S 228

Query: 659 SSLFDLVDKCLTVNPRLRISAEDALKH 685
           + ++ +++ C    P  R +    L+ 
Sbjct: 229 THVYQIMNHCWKERPEDRPAFSRLLRQ 255

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 5e-18
 Identities = 43/167 (25%), Positives = 63/167 (37%), Gaps = 15/167 (8%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRK---NDGTVVAIKCPHANASKHYVS---NELRMLER 252
             E   +    G G +G V++       N    VAIK      S         E   + +
Sbjct: 5   QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQ 64

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALA 308
           F   + I+K  G          ++E           +V K  +DL+ L  Y Y L  ALA
Sbjct: 65  FDHPH-IVKLIGVITENPV-WIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALA 122

Query: 309 SLHKQGIVHRDVKPGNFLF-SCKAVKGYLIDFNLAMVGFDGSFNQAT 354
            L  +  VHRD+   N L  S   VK    DF L+    D ++ +A+
Sbjct: 123 YLESKRFVHRDIAARNVLVSSNDCVKL--GDFGLSRYMEDSTYYKAS 167

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 8e-08
 Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 45/189 (23%)

Query: 500 GIAVAGAGLMNKG--PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGF 557
            ++ A A L +K     D++   +L+ +              + +    K         +
Sbjct: 116 QLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKW 175

Query: 558 RAPEVLFRSQHQGPKLDIWSAGVTLLYLMI-GRTPFFGDPEQNIKDIAKLRGSEDLWEVA 616
            APE +   +      D+W  GV +  +++ G  PF G    ++              + 
Sbjct: 176 MAPESI-NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDV--------------IG 220

Query: 617 KLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLR 676
           ++ N E                           R       P +L+ L+ KC   +P  R
Sbjct: 221 RIENGE---------------------------RLPMPPNCPPTLYSLMTKCWAYDPSRR 253

Query: 677 ISAEDALKH 685
               +    
Sbjct: 254 PRFTELKAQ 262

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 5e-18
 Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 29/159 (18%)

Query: 199 NFESFIVEEEEGSGGYGTVYRAR-------RKNDGTVVAIKCPHANASKHYVS---NELR 248
             +  ++ +  G G +G V  A        + N  T VA+K   ++A++  +S   +E+ 
Sbjct: 11  PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEME 70

Query: 249 MLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH-------------------DRPEVLKK 289
           M++  G    II   G          ++E+                      +     ++
Sbjct: 71  MMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEE 130

Query: 290 EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS 328
           ++    L    Y + R +  L  +  +HRD+   N L +
Sbjct: 131 QLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVT 169

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 5e-07
 Identities = 24/157 (15%), Positives = 46/157 (29%), Gaps = 43/157 (27%)

Query: 530 VPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM-IG 588
           +    +   +      KK         + APE LF   +   + D+WS GV L  +  +G
Sbjct: 176 IADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY-THQSDVWSFGVLLWEIFTLG 234

Query: 589 RTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLIT 648
            +P+ G P + +  + K                                           
Sbjct: 235 GSPYPGVPVEELFKLLKEG----------------------------------------- 253

Query: 649 KRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKH 685
            R D      + L+ ++  C    P  R + +  ++ 
Sbjct: 254 HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED 290

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 6e-18
 Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 22/151 (14%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANAS---KHYVSNELRML 250
             E   +  E G G +G VY    K        T VAIK  +  AS   +    NE  ++
Sbjct: 18  AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 77

Query: 251 ERFGGKNFIIKYEGCFKCGDSDCFVLEHV-------------KHDRPEVLKKEIDLSQLQ 297
           + F   + +++  G    G     ++E +                    +     LS++ 
Sbjct: 78  KEFNCHH-VVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMI 136

Query: 298 WYGYCLFRALASLHKQGIVHRDVKPGNFLFS 328
                +   +A L+    VHRD+   N + +
Sbjct: 137 QMAGEIADGMAYLNANKFVHRDLAARNCMVA 167

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 48/191 (25%)

Query: 500 GIAVAGAGLMNKG--PSDLSDLQILLLTKLHP-VPVLIIFYLLLGNGKQKKDGPCAGTKG 556
            IA   A L        DL+    ++       +    +   +      +K G       
Sbjct: 141 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 200

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD--PEQNIKDIAKLRGSEDLWE 614
           + +PE L +        D+WS GV L  +       +     EQ ++ + +         
Sbjct: 201 WMSPESL-KDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVME--------- 250

Query: 615 VAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPR 674
                                                D  +  P  LF+L+  C   NP+
Sbjct: 251 ---------------------------------GGLLDKPDNCPDMLFELMRMCWQYNPK 277

Query: 675 LRISAEDALKH 685
           +R S  + +  
Sbjct: 278 MRPSFLEIISS 288

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 7e-18
 Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 13/157 (8%)

Query: 199 NFESFIVEEEEGSGGYGTVYRARR---KNDGTVVAIKC------PHANASKHYVSNELRM 249
             E+F + +  G+G YG V+  R+    + G + A+K            +  +   E ++
Sbjct: 22  GIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQV 81

Query: 250 LERFGGKNFIIKYEGCFKCGDSDCFVLEHVKH-DRPEVLKKEIDLSQLQWYGYC--LFRA 306
           LE      F++     F+       +L+++   +    L +    ++ +   Y   +  A
Sbjct: 82  LEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLA 141

Query: 307 LASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM 343
           L  LHK GI++RD+K  N L         L DF L+ 
Sbjct: 142 LEHLHKLGIIYRDIKLENILLDSNG-HVVLTDFGLSK 177

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 6e-11
 Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 45/193 (23%)

Query: 515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQ-HQGPKL 573
           D+    ILL +  H V             + ++     GT  + AP+++          +
Sbjct: 154 DIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAV 213

Query: 574 DIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAK 633
           D WS GV +  L+ G +PF  D E+N              E+++                
Sbjct: 214 DWWSLGVLMYELLTGASPFTVDGEKNS-----------QAEISR---------------- 246

Query: 634 SLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRLRIS-----AEDALKHEFF 688
                      +++   P + + + +   DL+ + L  +P+ R+      A++  +H FF
Sbjct: 247 -----------RILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFF 295

Query: 689 APCH-EMLRKQKL 700
              + + L  +K+
Sbjct: 296 QKINWDDLAAKKV 308

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 1e-17
 Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 17/182 (9%)

Query: 196 VLPNFESFIVEEEE-GSGGYGTVYRA--RRKNDGTVVAIKCPHANAS----KHYVSNELR 248
           V  + +   +E++E GSG +GTV +   + K     VA+K     A+    K  +  E  
Sbjct: 1   VYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEAN 60

Query: 249 MLERFGGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVL---KKEIDLSQLQWYGYCLFR 305
           ++++      I++  G  +  +S   V+E  +           + +    +    + +  
Sbjct: 61  VMQQLDNPY-IVRMIGICEA-ESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSM 118

Query: 306 ALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPG----TKYV 361
            +  L +   VHRD+   N L   +     + DF L+                    K+ 
Sbjct: 119 GMKYLEESNFVHRDLAARNVLLVTQHY-AKISDFGLSKALRADENYYKAQTHGKWPVKWY 177

Query: 362 PP 363
            P
Sbjct: 178 AP 179

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 5e-09
 Identities = 23/142 (16%), Positives = 39/142 (27%), Gaps = 46/142 (32%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM-IGRTPFFGDPEQNIKDIAKLRGS 609
                 + APE +        K D+WS GV +      G+ P+ G     +         
Sbjct: 170 GKWPVKWYAPECI-NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEV--------- 219

Query: 610 EDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL 669
                 A L   E                           R       P  ++DL++ C 
Sbjct: 220 -----TAMLEKGE---------------------------RMGCPAGCPREMYDLMNLCW 247

Query: 670 TVNPRLRISAED---ALKHEFF 688
           T +   R         L++ ++
Sbjct: 248 TYDVENRPGFAAVELRLRNYYY 269

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 1e-17
 Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 3/161 (1%)

Query: 534 IIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF 593
           + F L    G      P   T+ +RAPEV+         +DIWS G  +  ++  +  F 
Sbjct: 161 LDFGLARTAGTSFMMTPYVVTRYYRAPEVI-LGMGYKENVDIWSVGCIMGEMVRHKILFP 219

Query: 594 G-DPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPD 652
           G D       + +  G+     + KL     ++ E+      L    L     L     +
Sbjct: 220 GRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLF-PDSLFPADSE 278

Query: 653 FLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHE 693
             ++  S   DL+ K L ++P  RIS +DAL+H +    ++
Sbjct: 279 HNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYD 319

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 6e-17
 Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 12/171 (7%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKH----YVSNELRMLERFGGKNF 258
           +   +  GSG  G V  A        VAIK                 EL +++       
Sbjct: 19  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVN-HKN 77

Query: 259 IIKYEGCFKCGDSD------CFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHK 312
           II     F    +         V+E +  +  +V++ E+D  ++ +  Y +   +  LH 
Sbjct: 78  IISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHS 137

Query: 313 QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
            GI+HRD+KP N +          +DF LA            +    Y  P
Sbjct: 138 AGIIHRDLKPSNIVVKSDCTLKI-LDFGLARTAGTSFMMTPYVVTRYYRAP 187

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 8e-17
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 11/164 (6%)

Query: 210 GSGGYGTVYRARRKND---GTVVAIKCPHANASKHYVS---NELRMLERFGGKNFIIKYE 263
           G G +G VY     ++       A+K  +       VS    E  +++ F   N +    
Sbjct: 36  GRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLG 95

Query: 264 GCFKCGDSDCFVLEHVK----HDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRD 319
            C +   S   VL ++K     +          +  L  +G  + + +  L  +  VHRD
Sbjct: 96  ICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRD 155

Query: 320 VKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
           +   N +   K     + DF LA   +D  F+         +P 
Sbjct: 156 LAARNCMLDEKFT-VKVADFGLARDMYDKEFDSVHNKTGAKLPV 198

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 1e-09
 Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 41/135 (30%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
                 + A E L ++Q    K D+WS GV L  LM    P + D               
Sbjct: 194 AKLPVKWMALESL-QTQKFTTKSDVWSFGVLLWELMTRGAPPYPD--------------V 238

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
           + +++     +                           +R    E  P  L++++ KC  
Sbjct: 239 NTFDITVYLLQG--------------------------RRLLQPEYCPDPLYEVMLKCWH 272

Query: 671 VNPRLRISAEDALKH 685
               +R S  + +  
Sbjct: 273 PKAEMRPSFSELVSR 287

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 2e-16
 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 19/179 (10%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDG----TVVAIKCPHANASKHYVS---NELRMLERF 253
                ++  G+G +G VY+   K         VAIK   A  ++        E  ++ +F
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 66

Query: 254 GGKNFIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALAS 309
              N II+ EG          + E++++   +   +E      + QL      +   +  
Sbjct: 67  SHHN-IIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKY 125

Query: 310 LHKQGIVHRDVKPGNFLFSCKA-VKGYLIDFNLAMVGFDGSFNQATLPGTK----YVPP 363
           L     VHRD+   N L +     K  + DF L+ V  D      T  G K    +  P
Sbjct: 126 LANMNYVHRDLAARNILVNSNLVCK--VSDFGLSRVLEDDPEATYTTSGGKIPIRWTAP 182

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 9e-07
 Identities = 19/134 (14%), Positives = 35/134 (26%), Gaps = 41/134 (30%)

Query: 551 CAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKLRGSE 610
                 + APE +   +      D+WS G+ +  +M      + +   +           
Sbjct: 173 GKIPIRWTAPEAI-SYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH----------- 220

Query: 611 DLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT 670
              EV K  N                             R       PS+++ L+ +C  
Sbjct: 221 ---EVMKAINDG--------------------------FRLPTPMDCPSAIYQLMMQCWQ 251

Query: 671 VNPRLRISAEDALK 684
                R    D + 
Sbjct: 252 QERARRPKFADIVS 265

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 3e-16
 Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 21/179 (11%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVS-NELRMLERFGGKNFI 259
            + +++E  G G +G V+R + +  G  VA+K   +   + +    E+        +N I
Sbjct: 3   RTIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSSREERSWFREAEIYQTVMLRHEN-I 59

Query: 260 IKYEGCFKCGDSDCFVLEHV--------------KHDRPEVLKKEIDLSQLQWYGYCLFR 305
           + +       +     L  V              ++        ++ LS      +    
Sbjct: 60  LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHME 119

Query: 306 ALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQATLPGTKYVPP 363
            + +  K  I HRD+K  N L          + D  LA+     +      P  +    
Sbjct: 120 IVGTQGKPAIAHRDLKSKNILVKKNGTCC--IADLGLAVRHDSATDTIDIAPNHRVGTK 176

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 6e-08
 Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 25/138 (18%)

Query: 552 AGTKGFRAPEVLFRSQHQ-----GPKLDIWSAGVTLLYLMIGRTPFFGDPEQNIKDIAKL 606
            GTK + APEVL  S +        + DI++ G+    +    +      +  +     +
Sbjct: 173 VGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV 232

Query: 607 RGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD 666
                + E+ K+   +   P                    I  R    E     +  ++ 
Sbjct: 233 PSDPSVEEMRKVVCEQKLRPN-------------------IPNRWQSCEA-LRVMAKIMR 272

Query: 667 KCLTVNPRLRISAEDALK 684
           +C   N   R++A    K
Sbjct: 273 ECWYANGAARLTALRIKK 290

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.8 bits (188), Expect = 6e-16
 Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 39/198 (19%)

Query: 201 ESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANASKHYVS---NELRMLER 252
            +     + G G +G V++AR          T+VA+K     AS    +    E  ++  
Sbjct: 13  NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 72

Query: 253 FGGKNFIIKYEGCFKCGDSDCFVLEHV---------------------------KHDRPE 285
           F   N +    G    G   C + E++                           +     
Sbjct: 73  FDNPNIVKLL-GVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSS 131

Query: 286 VLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVG 345
                +  ++       +   +A L ++  VHRD+   N L   + +   + DF L+   
Sbjct: 132 PGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVG-ENMVVKIADFGLSRNI 190

Query: 346 FDGSFNQATLPGTKYVPP 363
           +   + +A   G   +P 
Sbjct: 191 YSADYYKAD--GNDAIPI 206

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 43/148 (29%)

Query: 538 LLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM-IGRTPFFGDP 596
            +      K DG  A    +  PE +F +++   + D+W+ GV L  +   G  P++G  
Sbjct: 189 NIYSADYYKADGNDAIPIRWMPPESIFYNRY-TTESDVWAYGVVLWEIFSYGLQPYYGMA 247

Query: 597 EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEV 656
            + +                            +Y  +    +  PE C            
Sbjct: 248 HEEV----------------------------IYYVRDGNILACPENC------------ 267

Query: 657 IPSSLFDLVDKCLTVNPRLRISAEDALK 684
            P  L++L+  C +  P  R S     +
Sbjct: 268 -PLELYNLMRLCWSKLPADRPSFCSIHR 294

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (185), Expect = 1e-15
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 28/158 (17%)

Query: 199 NFESFIVEEEEGSGGYGTVYRAR-----RKNDGTVVAIKCPHANASKHYVS---NELRML 250
             +   + +  G G +G V  A      +      VA+K     A+        +EL++L
Sbjct: 11  PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL 70

Query: 251 ERFGGKNFIIKYEG-CFKCGDSDCFVLEHVKHD-------------------RPEVLKKE 290
              G    ++   G C K G     ++E  K                       ++ K  
Sbjct: 71  IHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDF 130

Query: 291 IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFS 328
           + L  L  Y + + + +  L  +  +HRD+   N L S
Sbjct: 131 LTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLS 168

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 27/194 (13%), Positives = 53/194 (27%), Gaps = 57/194 (29%)

Query: 496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHP-VPVLIIFYLLLGNGKQKKDGPCAGT 554
           L S                DL+   ILL  K    +    +   +  +    + G     
Sbjct: 150 LASRKCI----------HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 199

Query: 555 KGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG-RTPFFGDPEQNIKDIAKLRGSEDLW 613
             + APE +   +    + D+WS GV L  +     +P+ G                   
Sbjct: 200 LKWMAPETI-FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-------------- 244

Query: 614 EVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITK--RPDFLEVIPSSLFDLVDKCLTV 671
                                       E+C+ + +  R    +     ++  +  C   
Sbjct: 245 ----------------------------EFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHG 276

Query: 672 NPRLRISAEDALKH 685
            P  R +  + ++H
Sbjct: 277 EPSQRPTFSELVEH 290

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 5e-14
 Identities = 34/175 (19%), Positives = 58/175 (33%), Gaps = 17/175 (9%)

Query: 203 FIVEEEEGSGGYGTVYRARRKNDGTV----VAIKCPHANASKHYVS---NELRMLERFGG 255
           F   +  GSG +GTVY+     +G      VAIK      S        +E  ++     
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 70

Query: 256 KNFIIKYEGCFKCGDSDCFVLEHVK---HDRPEVLKKEIDLSQLQWYGYCLFRALASLHK 312
            + + +  G                    D     K  I    L  +   + + +  L  
Sbjct: 71  PH-VCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLED 129

Query: 313 QGIVHRDVKPGNFLFSCKA-VKGYLIDFNLA--MVGFDGSFNQATLPGT-KYVPP 363
           + +VHRD+   N L      VK  + DF LA  +   +  ++        K++  
Sbjct: 130 RRLVHRDLAARNVLVKTPQHVK--ITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 182

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 8e-10
 Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 46/190 (24%)

Query: 500 GIAVAGAGLMNKGPS--DLSDLQILLLTKLHP-VPVLIIFYLLLGNGKQKKDGPCAGTKG 556
            IA     L ++     DL+   +L+ T  H  +    +  LL    K+           
Sbjct: 119 QIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK 178

Query: 557 FRAPEVLFRSQHQGPKLDIWSAGVTLLYLM-IGRTPFFGDPEQNIKDIAKLRGSEDLWEV 615
           + A E +    +   + D+WS GVT+  LM  G  P+ G P   I  I +          
Sbjct: 179 WMALESILHRIY-THQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKG-------- 229

Query: 616 AKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL 675
                                            +R     +    ++ ++ KC  ++   
Sbjct: 230 ---------------------------------ERLPQPPICTIDVYMIMVKCWMIDADS 256

Query: 676 RISAEDALKH 685
           R    + +  
Sbjct: 257 RPKFRELIIE 266

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 68.3 bits (166), Expect = 8e-14
 Identities = 20/146 (13%), Positives = 41/146 (28%), Gaps = 16/146 (10%)

Query: 210 GSGGYGTVYRARRKNDGTVVAIKCPHANAS------------KHYVSNELRMLERFGGKN 257
           G G    V+    +       +K      +              + S       R   + 
Sbjct: 9   GEGKESAVFNCYSE-KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRA 67

Query: 258 FIIKYEGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVH 317
            + K +G              +           + +         +   +A  + +GIVH
Sbjct: 68  -LQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRGIVH 126

Query: 318 RDVKPGNFLFSCKAVKGYLIDFNLAM 343
            D+   N L S + +   +IDF  ++
Sbjct: 127 GDLSQYNVLVSEEGIW--IIDFPQSV 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	728
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.85
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.26
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.83
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	97.49
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	96.73
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	96.7
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.57

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-54  Score=451.66  Aligned_cols=145  Identities=25%  Similarity=0.334  Sum_probs=130.7

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      |.+++|++++.||+|+||+||+|+++.+|+.||||++....   ..+.+.+|+.+|++++||| |+++++++.+++..|+
T Consensus         2 Pf~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~Hpn-Iv~~~~~~~~~~~~~i   80 (271)
T d1nvra_           2 PFVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN-VVKFYGHRREGNIQYL   80 (271)
T ss_dssp             TTTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTT-BCCEEEEEEETTEEEE
T ss_pred             CCCcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCC-EeeEeeeeccCceeEE
Confidence            56789999999999999999999999999999999986542   2356889999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+.+++|..+..   .+++..++.++.||+.||.|||++|||||||||+||||+ +++.+||+|||+|+.
T Consensus        81 vmEy~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~-~~~~~KL~DFG~a~~  152 (271)
T d1nvra_          81 FLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLD-ERDNLKISDFGLATV  152 (271)
T ss_dssp             EEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEC-TTCCEEECCCTTCEE
T ss_pred             EEeccCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEEC-CCCCEEEccchhhee
Confidence            999999988766643   489999999999999999999999999999999999999 666899999999975

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-54  Score=448.47  Aligned_cols=248  Identities=24%  Similarity=0.379  Sum_probs=212.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC-----cCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA-----NASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~-----~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +++|++++.||+|+||+||+|+++.+|+.||||++..     ......+.+|+.++++++||| |+++++++.+++..|+
T Consensus         5 l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~~~~~~~~~~~~~i   83 (263)
T d2j4za1           5 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPN-ILRLYGYFHDATRVYL   83 (263)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTT-BCCEEEEEECSSEEEE
T ss_pred             hhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCC-CCeEEEEEEECCEEEE
Confidence            5789999999999999999999999999999999863     234567889999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          275 VLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       275 V~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      ||||++++++..+..   .+++..++.|+.||+.||+|||++|||||||||+||||+ .++.+||+|||+|+.....   
T Consensus        84 vmEy~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~-~~~~~kl~DFG~a~~~~~~---  159 (263)
T d2j4za1          84 ILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLG-SAGELKIADFGWSVHAPSS---  159 (263)
T ss_dssp             EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTSCEEECCCCSCSCCCCC---
T ss_pred             EEeecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceec-CCCCEeecccceeeecCCC---
Confidence            999999998876653   489999999999999999999999999999999999999 6678999999999641100   


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (263)
T d2j4za1         160 --------------------------------------------------------------------------------  159 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (263)
T d2j4za1         160 --------------------------------------------------------------------------------  159 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                         .....+||+.|+|||++.+. .|+.++|||||||++|+|++|++|
T Consensus       160 -----------------------------------~~~~~~Gt~~Y~APE~~~~~-~~~~~~DiwSlGvilyell~G~~P  203 (263)
T d2j4za1         160 -----------------------------------RRTTLCGTLDYLPPEMIEGR-MHDEKVDLWSLGVLCYEFLVGKPP  203 (263)
T ss_dssp             -----------------------------------CCEETTEEGGGCCHHHHTTC-CCCTTHHHHHHHHHHHHHHHSSCT
T ss_pred             -----------------------------------cccccCCCCcccCHHHHcCC-CCCchhhhhhHhHHHHHHhcCCCC
Confidence                                               00123599999999999665 469999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          592 FFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       592 F~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      |.+.+...+...+.                                          ...+.+++.+++++.+||.+||..
T Consensus       204 f~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~~li~~~L~~  241 (263)
T d2j4za1         204 FEANTYQETYKRIS------------------------------------------RVEFTFPDFVTEGARDLISRLLKH  241 (263)
T ss_dssp             TCCSSHHHHHHHHH------------------------------------------TTCCCCCTTSCHHHHHHHHHHTCS
T ss_pred             CCCCCHHHHHHHHH------------------------------------------cCCCCCCccCCHHHHHHHHHHccC
Confidence            99877655443221                                          112234456789999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCcc
Q 004835          672 NPRLRISAEDALKHEFFAP  690 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~  690 (728)
                      ||++|||++|+|+||||+.
T Consensus       242 dp~~R~t~~eil~hp~~~~  260 (263)
T d2j4za1         242 NPSQRPMLREVLEHPWITA  260 (263)
T ss_dssp             SGGGSCCHHHHHTCHHHHH
T ss_pred             CHhHCcCHHHHHcCcCcCC
Confidence            9999999999999999974

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-53  Score=447.52  Aligned_cols=253  Identities=27%  Similarity=0.404  Sum_probs=213.0

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ++|++.+.||+|+||+||+|+++.+|+.||||++...  ...+.+.+|+.++++++||| |++++++|...+.+|+||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~~~~~~~~~~~~~ivmEy   98 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN-IVNYLDSYLVGDELWVVMEY   98 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTT-BCCEEEEEEETTEEEEEEEC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCC-EeeEeEEEEECCEEEEEEEe
Confidence            4799999999999999999999999999999998643  34567899999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccCC
Q 004835          279 VKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATLP  356 (728)
Q Consensus       279 ~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~~  356 (728)
                      +.++++..+..  .+++..++.|+.||+.||.|||++|||||||||+||||+ .++.+||+|||+|+......       
T Consensus        99 ~~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~-~~~~vkl~DFG~a~~~~~~~-------  170 (293)
T d1yhwa1          99 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLG-MDGSVKLTDFGFCAQITPEQ-------  170 (293)
T ss_dssp             CTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTCCEEECCCTTCEECCSTT-------
T ss_pred             cCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEEC-CCCcEeeccchhheeecccc-------
Confidence            99999887764  489999999999999999999999999999999999999 56789999999997521100       


Q ss_pred             CCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCcc
Q 004835          357 GTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTPA  436 (728)
Q Consensus       357 ~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (728)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (293)
T d1yhwa1         171 --------------------------------------------------------------------------------  170 (293)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCCc
Q 004835          437 ERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSDL  516 (728)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  516 (728)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (293)
T d1yhwa1         171 --------------------------------------------------------------------------------  170 (293)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCCC
Q 004835          517 SDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGDP  596 (728)
Q Consensus       517 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~~  596 (728)
                                                   ......+||+.|+|||++.+. .|+.++|||||||++|+|++|++||.+.+
T Consensus       171 -----------------------------~~~~~~~gt~~Y~aPE~~~~~-~~~~~~DiwSlGvilyemltG~~Pf~~~~  220 (293)
T d1yhwa1         171 -----------------------------SKRSTMVGTPYWMAPEVVTRK-AYGPKVDIWSLGIMAIEMIEGEPPYLNEN  220 (293)
T ss_dssp             -----------------------------CCBCCCCSCGGGCCHHHHSSS-CBCTHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             -----------------------------ccccccccCCCccChhhhcCC-CCCchhceehHhHHHHHHhhCCCCCCCCC
Confidence                                         011245799999999999654 46999999999999999999999998877


Q ss_pred             hHH-HHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCCCC
Q 004835          597 EQN-IKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNPRL  675 (728)
Q Consensus       597 ~~~-l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP~~  675 (728)
                      ... +..+.. .+.                                       ....++..+++.+.+||.+||..||++
T Consensus       221 ~~~~~~~~~~-~~~---------------------------------------~~~~~~~~~s~~~~~li~~~L~~dP~~  260 (293)
T d1yhwa1         221 PLRALYLIAT-NGT---------------------------------------PELQNPEKLSAIFRDFLNRCLDMDVEK  260 (293)
T ss_dssp             HHHHHHHHHH-HCS---------------------------------------CCCSSGGGSCHHHHHHHHHHTCSSTTT
T ss_pred             HHHHHHHHHh-CCC---------------------------------------CCCCCcccCCHHHHHHHHHHccCChhH
Confidence            643 333221 110                                       012234568899999999999999999


Q ss_pred             CCCHHHHhcCCCCccch
Q 004835          676 RISAEDALKHEFFAPCH  692 (728)
Q Consensus       676 Rpta~e~L~Hp~f~~~~  692 (728)
                      ||||+|+|+||||+...
T Consensus       261 R~s~~eil~Hp~~~~~~  277 (293)
T d1yhwa1         261 RGSAKELLQHQFLKIAK  277 (293)
T ss_dssp             SCCHHHHTTCGGGGGCC
T ss_pred             CcCHHHHhcCHhhCCCC
Confidence            99999999999997543

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-52  Score=452.92  Aligned_cols=264  Identities=24%  Similarity=0.361  Sum_probs=223.9

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|++++.||+|+||.||+|+++.+|+.||||++.+.     .....+.+|+.+|++++||| |++++++|.+.+.+|
T Consensus         3 ~l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~-Iv~l~~~~~~~~~~~   81 (337)
T d1o6la_           3 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF-LTALKYAFQTHDRLC   81 (337)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTT-BCCEEEEEECSSEEE
T ss_pred             chHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCC-EEEEEeeeccccccc
Confidence            467899999999999999999999999999999998742     34567889999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.++.+..+..   .+++..++.++.||+.||+|||++|||||||||+||||+ .++.+||+|||+|+.....  
T Consensus        82 iv~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~-~~g~vkl~DFG~a~~~~~~--  158 (337)
T d1o6la_          82 FVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLD-KDGHIKITDFGLCKEGISD--  158 (337)
T ss_dssp             EEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEEC-TTSCEEECCCTTCBCSCCT--
T ss_pred             cceeccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEec-CCCCEEEeecccccccccC--
Confidence            9999999999876654   389999999999999999999999999999999999999 6678999999999742100  


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (337)
T d1o6la_         159 --------------------------------------------------------------------------------  158 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (337)
T d1o6la_         159 --------------------------------------------------------------------------------  158 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                        .......+||+.|+|||++.+.. |+.++|||||||++|||++|++
T Consensus       159 ----------------------------------~~~~~~~~GT~~Y~aPE~~~~~~-y~~~~DiwSlGvilyeml~G~~  203 (337)
T d1o6la_         159 ----------------------------------GATMKTFCGTPEYLAPEVLEDND-YGRAVDWWGLGVVMYEMMCGRL  203 (337)
T ss_dssp             ----------------------------------TCCBCCCEECGGGCCGGGGSSSC-BCTTHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------------------------CcccccceeCHHHhhhhhccCCC-CChhhcccchhhHHHHHHHCCC
Confidence                                              00112457999999999996655 6999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.+...+...+.                                          ...+.++..+++++.|||.+||+
T Consensus       204 pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~dli~~~L~  241 (337)
T d1o6la_         204 PFYNQDHERLFELIL------------------------------------------MEEIRFPRTLSPEAKSLLAGLLK  241 (337)
T ss_dssp             SSCCSSHHHHHHHHH------------------------------------------HCCCCCCTTSCHHHHHHHHHHTC
T ss_pred             CCCCcCHHHHHHHHh------------------------------------------cCCCCCCccCCHHHHHHHHhhcc
Confidence            999988766544331                                          12334556789999999999999


Q ss_pred             cCCCCCCC-----HHHHhcCCCCccchhcchHhHhhhc
Q 004835          671 VNPRLRIS-----AEDALKHEFFAPCHEMLRKQKLLRQ  703 (728)
Q Consensus       671 ~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~~~  703 (728)
                      +||.+|++     ++|+++||||+++.+....++.+.+
T Consensus       242 ~dP~~R~~~~~~~~~eil~Hp~f~~i~~~~l~~~~~~~  279 (337)
T d1o6la_         242 KDPKQRLGGGPSDAKEVMEHRFFLSINWQDVVQKKLLP  279 (337)
T ss_dssp             SSTTTSTTCSTTTHHHHHTSGGGTTCCHHHHHTTCSCC
T ss_pred             CCchhhcccccccHHHHHcCcccccCCHHHHHhCCCCC
Confidence            99999994     9999999999998876555544443

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-54  Score=458.74  Aligned_cols=143  Identities=27%  Similarity=0.372  Sum_probs=130.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      -++|++++.||+|+||+||+|+++.+|+.||||+++..   .....+.+|+.+|++++||| |++++++|.+.+.+|+||
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~Hpn-Iv~l~~~~~~~~~~~iVm   83 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY-IVGFYGAFYSDGEISICM   83 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTT-BCCEEEEEECSSEEEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCEEEEEE
Confidence            36899999999999999999999999999999998753   23457889999999999999 999999999999999999


Q ss_pred             eccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.+++|..+..   .+++..++.++.||+.||.|||+ +||+||||||+||||+ +++.+||+|||+|+.
T Consensus        84 Ey~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~-~~~~vkl~DFGla~~  154 (322)
T d1s9ja_          84 EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVN-SRGEIKLCDFGVSGQ  154 (322)
T ss_dssp             ECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEEC-TTCCEEECCCCCCHH
T ss_pred             EcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeEC-CCCCEEEeeCCCccc
Confidence            9999998887653   49999999999999999999997 4999999999999999 667899999999974

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-53  Score=447.16  Aligned_cols=256  Identities=27%  Similarity=0.345  Sum_probs=214.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC-----cCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA-----NASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~-----~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      ++|++++.||+|+||+||+|+++.+|+.||||++..     ......+.+|+.++++++||| |++++++|.+.+..|+|
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~~~~~iv   86 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF-FVKLYFTFQDDEKLYFG   86 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTT-BCCEEEEEECSSEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCC-eeEEEEEEEECCEEEEE
Confidence            579999999999999999999999999999999863     234567889999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |||+.++++..+..   .+++..++.++.||+.||+|||++|||||||||+||||+ +++.+||+|||+|+......   
T Consensus        87 mEy~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~-~~~~vkl~DFG~a~~~~~~~---  162 (288)
T d1uu3a_          87 LSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLN-EDMHIQITDFGTAKVLSPES---  162 (288)
T ss_dssp             ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTSCEEECCCTTCEECC------
T ss_pred             EEccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccC-CCceEEecccccceecccCC---
Confidence            99999988866543   499999999999999999999999999999999999999 66789999999997521100   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (288)
T d1uu3a_         163 --------------------------------------------------------------------------------  162 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (288)
T d1uu3a_         163 --------------------------------------------------------------------------------  162 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                     ........+||+.|+|||++.+.. |+.++|||||||++|||++|++||
T Consensus       163 -------------------------------~~~~~~~~~GT~~Y~APE~~~~~~-~~~~~DiwSlGvilyell~g~~Pf  210 (288)
T d1uu3a_         163 -------------------------------KQARANSFVGTAQYVSPELLTEKS-ACKSSDLWALGCIIYQLVAGLPPF  210 (288)
T ss_dssp             --------------------------------------CCCCGGGCCHHHHHTCC-CCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred             -------------------------------cccccccccCCccccCceeeccCC-CCcccceehhhHHHHHHhhCCCCC
Confidence                                           000112457999999999996554 699999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       593 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      .+.+...+...+.                                          ...+.+++.+++++.+||.+||..|
T Consensus       211 ~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~~li~~~L~~d  248 (288)
T d1uu3a_         211 RAGNEYLIFQKII------------------------------------------KLEYDFPEKFFPKARDLVEKLLVLD  248 (288)
T ss_dssp             CCSSHHHHHHHHH------------------------------------------TTCCCCCTTCCHHHHHHHHTTSCSS
T ss_pred             CCcCHHHHHHHHH------------------------------------------cCCCCCCccCCHHHHHHHHHHccCC
Confidence            9877655433221                                          1223445678899999999999999


Q ss_pred             CCCCCCHHH------HhcCCCCccchhcc
Q 004835          673 PRLRISAED------ALKHEFFAPCHEML  695 (728)
Q Consensus       673 P~~Rpta~e------~L~Hp~f~~~~~~~  695 (728)
                      |++|||++|      +++||||+++.+..
T Consensus       249 P~~R~t~~e~~~~~~i~~Hpff~~i~w~~  277 (288)
T d1uu3a_         249 ATKRLGCEEMEGYGPLKAHPFFESVTWEN  277 (288)
T ss_dssp             GGGSTTSGGGTCHHHHHTSGGGTTCCCTT
T ss_pred             HhHCcCHHHHcCCHHHHcCCccCCCCHHH
Confidence            999999988      58899999998653

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-52  Score=443.42  Aligned_cols=279  Identities=27%  Similarity=0.384  Sum_probs=219.6

Q ss_pred             EEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-------chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          205 VEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-------SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       205 i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-------~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      .+++||+|+||+||+|+++.+|+.||||+++...       ....+.+|+.+|++++|+| |+++++++..++..|+|||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpn-Iv~~~~~~~~~~~~~ivmE   80 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPN-IIGLLDAFGHKSNISLVFD   80 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTT-BCCEEEEECCTTCCEEEEE
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCC-EeEEEeeeccCCceeehhh
Confidence            4689999999999999999999999999986432       1346889999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcccc
Q 004835          278 HVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQAT  354 (728)
Q Consensus       278 ~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~  354 (728)
                      |+.++++..+..   .+++..++.++.||+.||+|||++||+||||||+|||++ ..+.+||+|||+|+......     
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~-~~~~~KL~DFG~a~~~~~~~-----  154 (299)
T d1ua2a_          81 FMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLD-ENGVLKLADFGLAKSFGSPN-----  154 (299)
T ss_dssp             CCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTCCEEECCCGGGSTTTSCC-----
T ss_pred             hhcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEEec-CCCccccccCccccccCCCc-----
Confidence            999988777654   389999999999999999999999999999999999999 66789999999996421000     


Q ss_pred             CCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCC
Q 004835          355 LPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRT  434 (728)
Q Consensus       355 ~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (299)
T d1ua2a_         155 --------------------------------------------------------------------------------  154 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCC
Q 004835          435 PAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPS  514 (728)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (299)
T d1ua2a_         155 --------------------------------------------------------------------------------  154 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCC
Q 004835          515 DLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFG  594 (728)
Q Consensus       515 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~  594 (728)
                                                     ......+||+.|+|||++.+...|+.++|||||||++|||++|.+||.+
T Consensus       155 -------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~  203 (299)
T d1ua2a_         155 -------------------------------RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPG  203 (299)
T ss_dssp             -------------------------------CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             -------------------------------ccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCC
Confidence                                           0111347999999999998777789999999999999999999999998


Q ss_pred             CCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCC
Q 004835          595 DPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNP  673 (728)
Q Consensus       595 ~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP  673 (728)
                      .+. +.+..|.+.+|++.........    ..+.. ......+...   +.       .....+++++.|||.+||++||
T Consensus       204 ~~~~~~l~~i~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~---~~-------~~~~~~s~~~~dll~~~L~~dP  268 (299)
T d1ua2a_         204 DSDLDQLTRIFETLGTPTEEQWPDMC----SLPDY-VTFKSFPGIP---LH-------HIFSAAGDDLLDLIQGLFLFNP  268 (299)
T ss_dssp             SSHHHHHHHHHHHHCCCCTTTSSSTT----SSTTC-CCCCCCCCCC---HH-------HHCTTCCHHHHHHHHHHHCSST
T ss_pred             CCHHHHHHHHHHhcCCCChhhccchh----ccchh-hhhccCCCCC---hH-------HhcccCCHHHHHHHHHHccCCh
Confidence            776 6688888888865431110000    00000 0001111111   11       1224578899999999999999


Q ss_pred             CCCCCHHHHhcCCCCccchhcch
Q 004835          674 RLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       674 ~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      ++||||+|+|+||||++.+.+..
T Consensus       269 ~~R~sa~e~L~Hp~f~~~p~p~~  291 (299)
T d1ua2a_         269 CARITATQALKMKYFSNRPGPTP  291 (299)
T ss_dssp             TTSCCHHHHHTSGGGTSSSCCCC
T ss_pred             hhCcCHHHHhCCHhhCCCCCCCC
Confidence            99999999999999998765443

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-52  Score=444.14  Aligned_cols=254  Identities=22%  Similarity=0.316  Sum_probs=216.4

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC-----cCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA-----NASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~-----~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~L  274 (728)
                      +++|++++.||+|+||+||+|+++.+|+.||||+++.     ....+.+.+|+.+++.++||| |+++++++.+++.+|+
T Consensus         3 l~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~~~~~~~~~~~~~i   81 (316)
T d1fota_           3 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPF-IIRMWGTFQDAQQIFM   81 (316)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTT-BCCEEEEEECSSEEEE
T ss_pred             hhHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcC-hhheeeeEeeCCeeee
Confidence            5689999999999999999999999999999999863     234567889999999999999 9999999999999999


Q ss_pred             EEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          275 VLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       275 V~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      ||||+.++++..+..   .+++..++.++.||+.||.|||++|||||||||+||||+ .++.+||+|||+|+....    
T Consensus        82 vmE~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~-~~g~vkL~DFG~a~~~~~----  156 (316)
T d1fota_          82 IMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLD-KNGHIKITDFGFAKYVPD----  156 (316)
T ss_dssp             EECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEEC-TTSCEEECCCSSCEECSS----
T ss_pred             EeeecCCccccccccccccccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEc-CCCCEEEecCccceEecc----
Confidence            999999998877653   378899999999999999999999999999999999999 667899999999975210    


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (316)
T d1fota_         157 --------------------------------------------------------------------------------  156 (316)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       157 --------------------------------------------------------------------------------  156 (316)
T d1fota_         157 --------------------------------------------------------------------------------  156 (316)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                         .....+||+.|+|||++.+.. |+.++|||||||++|+|++|+.|
T Consensus       157 -----------------------------------~~~~~~Gt~~Y~APE~l~~~~-y~~~~DiwSlGvilyemltG~~P  200 (316)
T d1fota_         157 -----------------------------------VTYTLCGTPDYIAPEVVSTKP-YNKSIDWWSFGILIYEMLAGYTP  200 (316)
T ss_dssp             -----------------------------------CBCCCCSCTTTCCHHHHTTCC-BCTTHHHHHHHHHHHHHHHSSCT
T ss_pred             -----------------------------------ccccccCcccccCHHHHcCCC-CCchhhccccchhHHHHHhCCCC
Confidence                                               001346999999999995554 69999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          592 FFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       592 F~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      |.+.+...+...+.                                          .....++..+++++.+||.+||..
T Consensus       201 f~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~~li~~~L~~  238 (316)
T d1fota_         201 FYDSNTMKTYEKIL------------------------------------------NAELRFPPFFNEDVKDLLSRLITR  238 (316)
T ss_dssp             TCCSSHHHHHHHHH------------------------------------------HCCCCCCTTSCHHHHHHHHHHTCS
T ss_pred             CCCcCHHHHHHHHH------------------------------------------cCCCCCCCCCCHHHHHHHHHHhhh
Confidence            99877654433221                                          112334456789999999999999


Q ss_pred             CCCCCC-----CHHHHhcCCCCccchhcchH
Q 004835          672 NPRLRI-----SAEDALKHEFFAPCHEMLRK  697 (728)
Q Consensus       672 dP~~Rp-----ta~e~L~Hp~f~~~~~~~~~  697 (728)
                      ||.+|+     |++++|+||||+++.+....
T Consensus       239 dp~~R~~~~r~t~~~il~Hp~f~~i~~~~l~  269 (316)
T d1fota_         239 DLSQRLGNLQNGTEDVKNHPWFKEVVWEKLL  269 (316)
T ss_dssp             CTTTCTTSSTTTTHHHHTSGGGSSCCHHHHH
T ss_pred             CHHhccccchhhHHHHHcCcccccCCHHHHH
Confidence            999996     89999999999999865433

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-52  Score=440.37  Aligned_cols=142  Identities=25%  Similarity=0.345  Sum_probs=129.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      +.|++++.||+|+||+||+|+++.+|+.||||++...  ...+.+.+|+.+|++++||| |+++++++.+.+..|+||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~~~~~~~~~~~lvmEy   90 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPN-IVKLLDAFYYENNLWILIEF   90 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTT-BCCEEEEEEETTEEEEEEEC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCC-CCeEEEEEeeCCeEEEEEec
Confidence            4699999999999999999999999999999998653  33467889999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.++++..+..    .+++..++.++.||+.||.|||++|||||||||+||||+ .++.+||+|||+|+.
T Consensus        91 ~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~-~~~~~Kl~DFG~a~~  159 (288)
T d2jfla1          91 CAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFT-LDGDIKLADFGVSAK  159 (288)
T ss_dssp             CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTSCEEECCCTTCEE
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeEC-CCCCEEEEechhhhc
Confidence            99999877642    389999999999999999999999999999999999999 667899999999864

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-52  Score=438.11  Aligned_cols=285  Identities=27%  Similarity=0.377  Sum_probs=225.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      +++|++++.||+|+||+||+|+++.+|+.||||+++...    ....+.+|+.+|++++|+| |++++++|.+++..|+|
T Consensus         1 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~-Iv~~~~~~~~~~~~~iv   79 (298)
T d1gz8a_           1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN-IVKLLDVIHTENKLYLV   79 (298)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTT-BCCEEEEEEETTEEEEE
T ss_pred             CCCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCc-EEEeccccccccceeEE
Confidence            479999999999999999999999999999999986432    3567889999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCc
Q 004835          276 LEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFN  351 (728)
Q Consensus       276 ~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~  351 (728)
                      |||+.++++..+..    .+++..++.++.||+.||.|||++|||||||||+|||++ .++.+||+|||+|+.....   
T Consensus        80 ~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~-~~~~~kl~DFG~a~~~~~~---  155 (298)
T d1gz8a_          80 FEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLIN-TEGAIKLADFGLARAFGVP---  155 (298)
T ss_dssp             EECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTSCEEECSTTHHHHHCCC---
T ss_pred             EeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeec-ccCcceeccCCcceeccCC---
Confidence            99999887665532    389999999999999999999999999999999999999 6668999999999752100   


Q ss_pred             cccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccc
Q 004835          352 QATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATS  431 (728)
Q Consensus       352 ~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~  431 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (298)
T d1gz8a_         156 --------------------------------------------------------------------------------  155 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCC
Q 004835          432 TRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNK  511 (728)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (298)
T d1gz8a_         156 --------------------------------------------------------------------------------  155 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCC
Q 004835          512 GPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTP  591 (728)
Q Consensus       512 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~P  591 (728)
                                                       .......+||+.|+|||++.....++.++|||||||++|+|++|+.|
T Consensus       156 ---------------------------------~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~P  202 (298)
T d1gz8a_         156 ---------------------------------VRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRAL  202 (298)
T ss_dssp             ---------------------------------SBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             ---------------------------------cccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCC
Confidence                                             00112446999999999998887779999999999999999999999


Q ss_pred             CCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          592 FFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       592 F~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      |.+.+. +.+..++...|.+............    .   .....+......+       ......+++++.|||.+||.
T Consensus       203 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~-------~~~~~~~s~~~~dll~~mL~  268 (298)
T d1gz8a_         203 FPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMP----D---YKPSFPKWARQDF-------SKVVPPLDEDGRSLLSQMLH  268 (298)
T ss_dssp             CCCSSHHHHHHHHHHHHCCCCTTTSTTGGGST----T---CCTTSCCCCCCCH-------HHHSTTCCHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHhcCCCchhhcccccccc----c---cccccccccccch-------hhhccCCCHHHHHHHHHHcc
Confidence            998775 5677888877764322111111000    0   0000111111111       11224678899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccchhcch
Q 004835          671 VNPRLRISAEDALKHEFFAPCHEMLR  696 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~~~~~  696 (728)
                      +||++||||+|+|+||||++++.+..
T Consensus       269 ~dP~~R~t~~ell~H~ff~~~~~p~p  294 (298)
T d1gz8a_         269 YDPNKRISAKAALAHPFFQDVTKPVP  294 (298)
T ss_dssp             SSTTTSCCHHHHHTSGGGTTCCCCCC
T ss_pred             CChhHCcCHHHHhCCHhhccCCCCCC
Confidence            99999999999999999999877654

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.6e-52  Score=450.30  Aligned_cols=263  Identities=23%  Similarity=0.358  Sum_probs=214.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHH---HHHHHhcCCCCceEEecceEEeCCe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNE---LRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~E---i~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      +++|++++.||+|+||.||+|+++.+|+.||||++...     .....+.+|   +.+++.+.||| |++++++|...+.
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpn-Iv~l~~~~~~~~~   81 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPF-IVCMSYAFHTPDK   81 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTT-BCCEEEEEECSSE
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCc-EEEEEEEEEECCE
Confidence            67999999999999999999999999999999998632     222334444   66677778998 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          272 DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      +|+||||+.+++|..++.   .+++..++.|+.||+.||.|||++|||||||||+||||+ ..+.+||+|||+|+.....
T Consensus        82 ~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~-~~g~iKl~DFGla~~~~~~  160 (364)
T d1omwa3          82 LSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLD-EHGHVRISDLGLACDFSKK  160 (364)
T ss_dssp             EEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-SSSCEEECCCTTCEECSSS
T ss_pred             EEEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEc-CCCcEEEeeeceeeecCCC
Confidence            999999999999877654   388999999999999999999999999999999999999 6678999999999742100


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (364)
T d1omwa3         161 --------------------------------------------------------------------------------  160 (364)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (364)
T d1omwa3         161 --------------------------------------------------------------------------------  160 (364)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                            .....+||+.|+|||++.+...|+.++|||||||++|||++|
T Consensus       161 --------------------------------------~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG  202 (364)
T d1omwa3         161 --------------------------------------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG  202 (364)
T ss_dssp             --------------------------------------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------cccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhC
Confidence                                                  011346999999999997666689999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          589 RTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       589 ~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      +.||.+........+.+..                                       ....+.++..+++++.+||.+|
T Consensus       203 ~~Pf~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~s~~~~~li~~~  243 (364)
T d1omwa3         203 HSPFRQHKTKDKHEIDRMT---------------------------------------LTMAVELPDSFSPELRSLLEGL  243 (364)
T ss_dssp             SCSSCSSCSSCHHHHHHHS---------------------------------------SSCCCCCCSSSCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHhc---------------------------------------ccCCCCCCCCCCHHHHHHHHHH
Confidence            9999876543332222210                                       1122344567899999999999


Q ss_pred             cccCCCCCCC-----HHHHhcCCCCccchhcchHhHhh
Q 004835          669 LTVNPRLRIS-----AEDALKHEFFAPCHEMLRKQKLL  701 (728)
Q Consensus       669 L~~dP~~Rpt-----a~e~L~Hp~f~~~~~~~~~~~~~  701 (728)
                      |..||++|||     |+|+++||||+++.+.....+.+
T Consensus       244 L~~dP~~R~t~~~~~a~eil~Hp~f~~i~~~~~~~~~~  281 (364)
T d1omwa3         244 LQRDVNRRLGCLGRGAQEVKESPFFRSLDWQMVFLQKY  281 (364)
T ss_dssp             TCSSTTTSTTTSSSTHHHHHTSGGGTTCCHHHHHTTCS
T ss_pred             cccCHHHhCCCcccCHHHHHcCccccCCCHHHHhcCCC
Confidence            9999999999     89999999999998765544433

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=9.4e-52  Score=447.73  Aligned_cols=257  Identities=23%  Similarity=0.349  Sum_probs=213.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +++|++++.||+|+||+||+|+++.+|+.||||++....  ..+.+.+|+.+|++++||| |++++++|.+.+.+|+|||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~~~~~~~~~~~~~ivmE  103 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT-LVNLHDAFEDDNEMVMIYE  103 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTT-BCCEEEEEEETTEEEEEEC
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCEEEEEEE
Confidence            578999999999999999999999999999999987543  3456889999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHh-h---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec-CCCceEEEeeeccccccCCCCcc
Q 004835          278 HVKHDRPEVLK-K---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC-KAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       278 ~~~~~~l~~l~-~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~-~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |+.+++|..+. +   .+++..++.|+.||+.||.|||++|||||||||+||||+. .++.+||+|||+|+......   
T Consensus       104 ~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~---  180 (350)
T d1koaa2         104 FMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ---  180 (350)
T ss_dssp             CCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTS---
T ss_pred             cCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheeccccc---
Confidence            99999886654 2   3899999999999999999999999999999999999974 35689999999997521100   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (350)
T d1koaa2         181 --------------------------------------------------------------------------------  180 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (350)
T d1koaa2         181 --------------------------------------------------------------------------------  180 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                        .....+||+.|||||++.+.. |+.++||||||||+|+|++|++||
T Consensus       181 ----------------------------------~~~~~~gT~~Y~aPEv~~~~~-~~~~~DiwSlGvilyell~G~~Pf  225 (350)
T d1koaa2         181 ----------------------------------SVKVTTGTAEFAAPEVAEGKP-VGYYTDMWSVGVLSYILLSGLSPF  225 (350)
T ss_dssp             ----------------------------------CEEEECSCTTTCCHHHHHTCC-BCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred             ----------------------------------ccceecCcccccCHHHHcCCC-CChhHhhhhhhHHHHHHHhCCCCC
Confidence                                              001346899999999996654 699999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       593 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      .+.+...+...+...              ...+                        .......+++++.+||.+||.+|
T Consensus       226 ~~~~~~~~~~~i~~~--------------~~~~------------------------~~~~~~~~s~~~~~li~~~L~~d  267 (350)
T d1koaa2         226 GGENDDETLRNVKSC--------------DWNM------------------------DDSAFSGISEDGKDFIRKLLLAD  267 (350)
T ss_dssp             CCSSHHHHHHHHHHT--------------CCCS------------------------CCGGGGGCCHHHHHHHHHHCCSS
T ss_pred             CCCCHHHHHHHHHhC--------------CCCC------------------------CcccccCCCHHHHHHHHHHccCC
Confidence            988775443322110              0000                        11223467899999999999999


Q ss_pred             CCCCCCHHHHhcCCCCccchh
Q 004835          673 PRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      |++|||++|+|+||||++.+.
T Consensus       268 P~~R~t~~eil~hp~~~~~~~  288 (350)
T d1koaa2         268 PNTRMTIHQALEHPWLTPGNA  288 (350)
T ss_dssp             GGGSCCHHHHHHSTTTSCTTC
T ss_pred             hhHCcCHHHHhcCcccCCCCC
Confidence            999999999999999997654

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.9e-52  Score=441.52  Aligned_cols=253  Identities=25%  Similarity=0.412  Sum_probs=198.9

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      +.|++.+.||+|+||+||+|+++.+|+.||||++...   .....+.+|+.+|++++||| |+++++++.+++.+|+|||
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~Hpn-Iv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPN-IVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTT-BCCEEEEEECSSEEEEEEC
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCEEEEEEe
Confidence            4699999999999999999999999999999998753   23355779999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec--CCCceEEEeeeccccccCCCCcc
Q 004835          278 HVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC--KAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       278 ~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~--~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |+++++|..++.   .+++..+..++.||+.||+|||++|||||||||+|||+..  +++.+||+|||+|+.....    
T Consensus        88 ~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~----  163 (307)
T d1a06a_          88 LVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPG----  163 (307)
T ss_dssp             CCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC-------------
T ss_pred             ccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCC----
Confidence            999988876653   3999999999999999999999999999999999999963  4578999999999742100    


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (307)
T d1a06a_         164 --------------------------------------------------------------------------------  163 (307)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (307)
T d1a06a_         164 --------------------------------------------------------------------------------  163 (307)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                       ......+||+.|+|||++.+. .|+.++|||||||++|||++|++||
T Consensus       164 ---------------------------------~~~~~~~GT~~y~APE~~~~~-~~~~~~DiwSlGvilyell~g~~Pf  209 (307)
T d1a06a_         164 ---------------------------------SVLSTACGTPGYVAPEVLAQK-PYSKAVDCWSIGVIAYILLCGYPPF  209 (307)
T ss_dssp             ------------------------------------------CTTSCHHHHTTC-CCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ---------------------------------CeeeeeeeCccccCcHHHcCC-CCCcHHHhhhhhHHHHHHHhCCCCC
Confidence                                             001134699999999999655 4799999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       593 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      .+.....+...+.. +             ...+                        ....+..+++++.+||.+||..|
T Consensus       210 ~~~~~~~~~~~i~~-~-------------~~~~------------------------~~~~~~~~s~~~~~li~~~L~~d  251 (307)
T d1a06a_         210 YDENDAKLFEQILK-A-------------EYEF------------------------DSPYWDDISDSAKDFIRHLMEKD  251 (307)
T ss_dssp             CCSSHHHHHHHHHT-T-------------CCCC------------------------CTTTTTTSCHHHHHHHHHHSCSS
T ss_pred             CCCCHHHHHHHHhc-c-------------CCCC------------------------CCccccCCCHHHHHHHHHHccCC
Confidence            98776554332210 0             0000                        11223567899999999999999


Q ss_pred             CCCCCCHHHHhcCCCCcc
Q 004835          673 PRLRISAEDALKHEFFAP  690 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~~  690 (728)
                      |++|||++|+|+||||++
T Consensus       252 P~~R~s~~eil~hp~~~~  269 (307)
T d1a06a_         252 PEKRFTCEQALQHPWIAG  269 (307)
T ss_dssp             GGGSCCHHHHHHSTTTTS
T ss_pred             HhHCcCHHHHhcCHhhCC
Confidence            999999999999999985

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-51  Score=434.00  Aligned_cols=256  Identities=24%  Similarity=0.362  Sum_probs=210.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--------CchhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--------ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      +.|++++.||+|+||+||+|+++.+|+.||||++...        ...+.+.+|+.+|++++||| |++++++|.+.+.+
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~~~~~~~~~~~~   88 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPN-VITLHEVYENKTDV   88 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTT-BCCEEEEEECSSEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCEE
Confidence            4699999999999999999999999999999998632        12456889999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC---ceEEEeeecccccc
Q 004835          273 CFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV---KGYLIDFNLAMVGF  346 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~---~~kL~DFGlA~~~~  346 (728)
                      |+|||||.+++|..++.   .+++..++.++.||+.||+|||++|||||||||+|||++.++.   .+||+|||+|....
T Consensus        89 ~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~  168 (293)
T d1jksa_          89 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID  168 (293)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECT
T ss_pred             EEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcC
Confidence            99999999998877653   3999999999999999999999999999999999999984442   58999999997521


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ..                                                                              
T Consensus       169 ~~------------------------------------------------------------------------------  170 (293)
T d1jksa_         169 FG------------------------------------------------------------------------------  170 (293)
T ss_dssp             TS------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (293)
T d1jksa_         171 --------------------------------------------------------------------------------  170 (293)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                             ......+||+.|+|||++.+. .++.++|||||||++|||+
T Consensus       171 ---------------------------------------~~~~~~~~t~~y~APE~~~~~-~~~~~~DiwSlGvilyell  210 (293)
T d1jksa_         171 ---------------------------------------NEFKNIFGTPEFVAPEIVNYE-PLGLEADMWSIGVITYILL  210 (293)
T ss_dssp             ---------------------------------------CBCSCCCCCGGGCCHHHHTTC-CBCTHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------ccccccCCCCcccCHHHHcCC-CCCCcccchhhhHHHHHHH
Confidence                                                   001134689999999999554 4699999999999999999


Q ss_pred             cCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          587 IGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       587 tG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      +|+.||.+.+...+...+..              ....++                        ..++..+++.+.+||.
T Consensus       211 ~g~~Pf~~~~~~~~~~~i~~--------------~~~~~~------------------------~~~~~~~s~~~~~li~  252 (293)
T d1jksa_         211 SGASPFLGDTKQETLANVSA--------------VNYEFE------------------------DEYFSNTSALAKDFIR  252 (293)
T ss_dssp             HSSCSSCCSSHHHHHHHHHT--------------TCCCCC------------------------HHHHTTSCHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHh--------------cCCCCC------------------------chhcCCCCHHHHHHHH
Confidence            99999998877554332210              011111                        1223567899999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccchh
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      +||..||++|||++|+|+||||++..+
T Consensus       253 ~~L~~dP~~R~s~~eil~hp~~~~~~~  279 (293)
T d1jksa_         253 RLLVKDPKKRMTIQDSLQHPWIKPKDT  279 (293)
T ss_dssp             TTSCSSGGGSCCHHHHHHSTTTCC---
T ss_pred             HHccCChhHCcCHHHHhcCcccCCCCh
Confidence            999999999999999999999987653

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-51  Score=445.92  Aligned_cols=262  Identities=23%  Similarity=0.312  Sum_probs=220.9

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      .+++|++++.||+|+||.||+|+++.+|+.||||++...     ...+.+.+|+.+|+.++||| |+++++++......+
T Consensus        39 ~ld~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~~~~~~~~~~~~~  117 (350)
T d1rdqe_          39 QLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPF-LVKLEFSFKDNSNLY  117 (350)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEE
T ss_pred             CccCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCc-Eeecccccccccccc
Confidence            357999999999999999999999999999999998632     34466889999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.++.+..+..   .+++..++.|+.||+.||.|||++|||||||||+||||+ .++.+||+|||+|+....   
T Consensus       118 ~v~e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~-~~g~ikL~DFG~a~~~~~---  193 (350)
T d1rdqe_         118 MVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLID-QQGYIQVTDFGFAKRVKG---  193 (350)
T ss_dssp             EEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTSCEEECCCTTCEECSS---
T ss_pred             cccccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccC-CCCCEEeeeceeeeeccc---
Confidence            9999999998866643   499999999999999999999999999999999999999 567899999999975210   


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (350)
T d1rdqe_         194 --------------------------------------------------------------------------------  193 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (350)
T d1rdqe_         194 --------------------------------------------------------------------------------  193 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                          .....+||+.|||||++.+.. |+.++||||||||+|||++|++
T Consensus       194 ------------------------------------~~~~~~Gt~~Y~APE~~~~~~-~~~~~DiwSlGvilyemltG~~  236 (350)
T d1rdqe_         194 ------------------------------------RTWTLCGTPEALAPEIILSKG-YNKAVDWWALGVLIYEMAAGYP  236 (350)
T ss_dssp             ------------------------------------CBCCCEECGGGCCHHHHTTCC-BCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ------------------------------------ccccccCccccCCHHHHcCCC-CCccccccchhHHHHHHHhCCC
Confidence                                                001346999999999996654 6999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.+...+...+.                                          ...+.++..+++++.+||.+||.
T Consensus       237 Pf~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~~li~~~L~  274 (350)
T d1rdqe_         237 PFFADQPIQIYEKIV------------------------------------------SGKVRFPSHFSSDLKDLLRNLLQ  274 (350)
T ss_dssp             SSCCSSHHHHHHHHH------------------------------------------HCCCCCCTTCCHHHHHHHHHHSC
T ss_pred             CCCCcCHHHHHHHHh------------------------------------------cCCCCCCccCCHHHHHHHHHHhh
Confidence            999877654433221                                          11233445688999999999999


Q ss_pred             cCCCCCC-----CHHHHhcCCCCccchhcchHhHhhhcc
Q 004835          671 VNPRLRI-----SAEDALKHEFFAPCHEMLRKQKLLRQG  704 (728)
Q Consensus       671 ~dP~~Rp-----ta~e~L~Hp~f~~~~~~~~~~~~~~~~  704 (728)
                      .||.+|+     |++++|+||||+++.+....++.+.+.
T Consensus       275 ~dP~kR~~~~r~t~~ell~Hp~f~~~~~~~~~~~~~~~p  313 (350)
T d1rdqe_         275 VDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAP  313 (350)
T ss_dssp             SCTTTCTTSSTTTTHHHHTSGGGTTCCHHHHHTTCSCCS
T ss_pred             hCHHhccccccccHHHHHcCccccCCCHHHHHhcCCCcC
Confidence            9999995     899999999999998766655554443

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-51  Score=431.09  Aligned_cols=141  Identities=21%  Similarity=0.293  Sum_probs=124.8

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEe----CCeeEE
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKC----GDSDCF  274 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~----~~~~~L  274 (728)
                      |++.++||+|+||+||+|++..+++.||+|++....    ..+.+.+|+.+|++++||| |++++++|..    ...+|+
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~~~~~~~~~~~~~~~~~i   89 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPN-IVRFYDSWESTVKGKKCIVL   89 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTT-BCCEEEEEEEESSSCEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCC-eeeEEEEEeeccccCCEEEE
Confidence            478889999999999999999999999999986432    2356889999999999999 9999999875    356899


Q ss_pred             EEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCC--cEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQG--IVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~g--IIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||+++++|..+..   .+++..++.++.||+.||+|||+++  ||||||||+||||+.+++.+||+|||+|+.
T Consensus        90 vmE~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~  164 (270)
T d1t4ha_          90 VTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL  164 (270)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred             EEeCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCccee
Confidence            999999999877653   3899999999999999999999998  999999999999975677899999999974

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=5.3e-51  Score=436.08  Aligned_cols=290  Identities=27%  Similarity=0.449  Sum_probs=230.1

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcC-CCCceEEecceEEe--CCeeEEE
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFG-GKNFIIKYEGCFKC--GDSDCFV  275 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~~--~~~~~LV  275 (728)
                      +.++|+++++||+|+||+||+|+++.+|+.||||+++.. ...++.+|+.+|+.+. |+| |++++++|..  ....|+|
T Consensus        33 ~~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~-~~~~~~~Ei~il~~l~~hpn-Iv~~~~~~~~~~~~~~~~v  110 (328)
T d3bqca1          33 NQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV-KKKKIKREIKILENLRGGPN-IITLADIVKDPVSRTPALV  110 (328)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS-CHHHHHHHHHHHHHHTTSTT-BCCEEEEEECTTTCSEEEE
T ss_pred             CCcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH-HHHHHHHHHHHHHhccCCCC-CcEEEEEEEecCCCceeEE
Confidence            346899999999999999999999999999999998754 3566889999999996 777 9999999974  4568999


Q ss_pred             EeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCccccC
Q 004835          276 LEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQATL  355 (728)
Q Consensus       276 ~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~~~~  355 (728)
                      |||+.++++..+.+.+++..++.++.||+.||.|||++|||||||||+||||+.++..+||+|||+|......       
T Consensus       111 ~e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~-------  183 (328)
T d3bqca1         111 FEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG-------  183 (328)
T ss_dssp             EECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTT-------
T ss_pred             EeecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccCC-------
Confidence            9999999998888889999999999999999999999999999999999999966777999999999752110       


Q ss_pred             CCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccCCc
Q 004835          356 PGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTRTP  435 (728)
Q Consensus       356 ~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (728)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (328)
T d3bqca1         184 --------------------------------------------------------------------------------  183 (328)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCCCC
Q 004835          436 AERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGPSD  515 (728)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  515 (728)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (328)
T d3bqca1         184 --------------------------------------------------------------------------------  183 (328)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCCCC
Q 004835          516 LSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFFGD  595 (728)
Q Consensus       516 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~~~  595 (728)
                                                    ......+||+.|+|||++.+...++.++||||+||++|+|++|+.||...
T Consensus       184 ------------------------------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~  233 (328)
T d3bqca1         184 ------------------------------QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHG  233 (328)
T ss_dssp             ------------------------------CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             ------------------------------CcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCC
Confidence                                          00113468999999999988777899999999999999999999999765


Q ss_pred             Ch--HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccCC
Q 004835          596 PE--QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVNP  673 (728)
Q Consensus       596 ~~--~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~dP  673 (728)
                      ..  .+...+...+|.+..+...........  ....  ..........|...  ........+++++.|||.+||++||
T Consensus       234 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~--~~~~~~~~~s~~~~dli~~mL~~dP  307 (328)
T d3bqca1         234 HDNYDQLVRIAKVLGTEDLYDYIDKYNIELD--PRFN--DILGRHSRKRWERF--VHSENQHLVSPEALDFLDKLLRYDH  307 (328)
T ss_dssp             SSHHHHHHHHHHHHCHHHHHHHHHHTTCCCC--GGGG--GTCCCCCCCCGGGG--CCTTTGGGCCHHHHHHHHHHSCSSG
T ss_pred             chhHHHHHHHHHHHCCchhhhhhhhcccccC--cccc--hhcccccccchhhc--ccccccccCCHHHHHHHHHHccCCh
Confidence            43  567778888887665554433221111  0000  11111111122111  1223345688999999999999999


Q ss_pred             CCCCCHHHHhcCCCCccchh
Q 004835          674 RLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       674 ~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      ++||||+|||+||||+++.+
T Consensus       308 ~~R~ta~e~L~Hp~F~~v~~  327 (328)
T d3bqca1         308 QSRLTAREAMEHPYFYTVVK  327 (328)
T ss_dssp             GGSCCHHHHHTSGGGTTSCC
T ss_pred             hHCcCHHHHhcCcccCCCCC
Confidence            99999999999999999865

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-52  Score=432.52  Aligned_cols=249  Identities=24%  Similarity=0.306  Sum_probs=198.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEe--CCeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKC--GDSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~--~~~~~  273 (728)
                      .++|++.+.||+|+||+||+|+++.+|+.||||++....    ..+.+.+|+.++++++||| |+++++++.+  ++.+|
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~~~~~~~~~~~~~~~   81 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN-IVRYYDRIIDRTNTTLY   81 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTT-BCCEEEEEEC----CEE
T ss_pred             chhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCC-EeeEEEEEEeCCCCEEE
Confidence            368999999999999999999999999999999987543    2345789999999999999 9999998854  46689


Q ss_pred             EEEeccCCCChHHHhh-------cCChHHHHHHHHHHHHHHHHHHhCC-----cEeccCCCCceEeecCCCceEEEeeec
Q 004835          274 FVLEHVKHDRPEVLKK-------EIDLSQLQWYGYCLFRALASLHKQG-----IVHRDVKPGNFLFSCKAVKGYLIDFNL  341 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~-------~l~~~~~~~i~~QIl~aL~yLHs~g-----IIHRDIKPeNILld~~~~~~kL~DFGl  341 (728)
                      +||||+++++|..+..       .+++..++.++.||+.||.|||++|     ||||||||+||||+ .++.+||+|||+
T Consensus        82 ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~-~~~~vkl~DFG~  160 (269)
T d2java1          82 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLD-GKQNVKLGDFGL  160 (269)
T ss_dssp             EEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEEC-TTSCEEECCHHH
T ss_pred             EEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcC-CCCcEEEeeccc
Confidence            9999999998877653       3899999999999999999999976     99999999999999 667899999999


Q ss_pred             cccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCC
Q 004835          342 AMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGS  421 (728)
Q Consensus       342 A~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~  421 (728)
                      |+......                                                                        
T Consensus       161 a~~~~~~~------------------------------------------------------------------------  168 (269)
T d2java1         161 ARILNHDT------------------------------------------------------------------------  168 (269)
T ss_dssp             HHHC----------------------------------------------------------------------------
T ss_pred             eeecccCC------------------------------------------------------------------------
Confidence            97521100                                                                        


Q ss_pred             CccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCc
Q 004835          422 GITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGI  501 (728)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (728)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (269)
T d2java1         169 --------------------------------------------------------------------------------  168 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHH
Q 004835          502 AVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVT  581 (728)
Q Consensus       502 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~i  581 (728)
                                                                  ......+||+.|+|||++.+. .|+.++|||||||+
T Consensus       169 --------------------------------------------~~~~~~~gt~~Y~APE~l~~~-~~~~~~DIwSlGvi  203 (269)
T d2java1         169 --------------------------------------------SFAKAFVGTPYYMSPEQMNRM-SYNEKSDIWSLGCL  203 (269)
T ss_dssp             ---------------------------------------------------CCCSCCCHHHHTTC-CCCHHHHHHHHHHH
T ss_pred             --------------------------------------------CccccCCCCcccCCHHHHcCC-CCChHHHHHhhCHH
Confidence                                                        001134699999999999554 47999999999999


Q ss_pred             HHHHhcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhH
Q 004835          582 LLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSL  661 (728)
Q Consensus       582 l~eLltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  661 (728)
                      +|||++|++||.+.+...+...+.. |                                        ..+.++..+++++
T Consensus       204 lyel~tg~~Pf~~~~~~~~~~~i~~-~----------------------------------------~~~~~~~~~s~~l  242 (269)
T d2java1         204 LYELCALMPPFTAFSQKELAGKIRE-G----------------------------------------KFRRIPYRYSDEL  242 (269)
T ss_dssp             HHHHHHSSCSCCCSSHHHHHHHHHH-T----------------------------------------CCCCCCTTSCHHH
T ss_pred             HHHHhhCCCCCCCCCHHHHHHHHHc-C----------------------------------------CCCCCCcccCHHH
Confidence            9999999999998777655433310 0                                        0112334678999


Q ss_pred             HHHHHHhcccCCCCCCCHHHHhcCCCC
Q 004835          662 FDLVDKCLTVNPRLRISAEDALKHEFF  688 (728)
Q Consensus       662 ~dLi~~~L~~dP~~Rpta~e~L~Hp~f  688 (728)
                      .+||.+||..||.+|||++|+|+|||.
T Consensus       243 ~~li~~~L~~dp~~Rps~~ell~hp~i  269 (269)
T d2java1         243 NEIITRMLNLKDYHRPSVEEILENPLI  269 (269)
T ss_dssp             HHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             HHHHHHHcCCChhHCcCHHHHHhCCcC
Confidence            999999999999999999999999995

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.8e-51  Score=438.17  Aligned_cols=141  Identities=30%  Similarity=0.441  Sum_probs=128.3

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~  276 (728)
                      .|++++.||+|+||+||+|++..+|+.||||++.....     .+.+.+|+.+|++++||| |+++++++.+++..|+||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~Hpn-Iv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN-TIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTT-BCCEEEEEEETTEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCC-EeeEEEEEEECCEEEEEE
Confidence            59999999999999999999999999999999875432     245789999999999999 999999999999999999


Q ss_pred             eccCCCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||.++++..+.   ..+++..++.|+.||+.||.|||++|||||||||+||||+ +++.+||+|||+|..
T Consensus        95 E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~-~~~~~Kl~DFG~a~~  164 (309)
T d1u5ra_          95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLS-EPGLVKLGDFGSASI  164 (309)
T ss_dssp             ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEE-TTTEEEECCCTTCBS
T ss_pred             EecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEC-CCCCEEEeecccccc
Confidence            999999887654   2489999999999999999999999999999999999999 677899999999864

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=3.1e-51  Score=443.98  Aligned_cols=257  Identities=26%  Similarity=0.367  Sum_probs=212.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ++.|++++.||+|+||+||+|+++.+|+.||||++....  ....+.+|+.+|++++||| |++++++|.+++.+|||||
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn-Iv~~~~~~~~~~~~~ivmE  106 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPK-LINLHDAFEDKYEMVLILE  106 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTT-BCCEEEEEECSSEEEEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCC-CCcEEEEEEECCEEEEEEE
Confidence            568999999999999999999999999999999987543  2456789999999999999 9999999999999999999


Q ss_pred             ccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec-CCCceEEEeeeccccccCCCCcc
Q 004835          278 HVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC-KAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       278 ~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~-~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      ||.++.|.....    .+++.+++.|+.||+.||.|||++|||||||||+||||+. ..+.+||+|||+|.......   
T Consensus       107 ~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~---  183 (352)
T d1koba_         107 FLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE---  183 (352)
T ss_dssp             CCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS---
T ss_pred             cCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCC---
Confidence            999998865432    3899999999999999999999999999999999999973 45789999999997521100   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (352)
T d1koba_         184 --------------------------------------------------------------------------------  183 (352)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (352)
T d1koba_         184 --------------------------------------------------------------------------------  183 (352)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                        ......||+.|+|||++.+.. |+.++|||||||++|+|++|++||
T Consensus       184 ----------------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlGvilyelltG~~Pf  228 (352)
T d1koba_         184 ----------------------------------IVKVTTATAEFAAPEIVDREP-VGFYTDMWAIGVLGYVLLSGLSPF  228 (352)
T ss_dssp             ----------------------------------CEEEECSSGGGCCHHHHTTCC-BCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             ----------------------------------ceeeccCcccccCHHHHcCCC-CCCccchHHHHHHHHHHHhCCCCC
Confidence                                              011345899999999996554 699999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          593 FGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       593 ~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      .+.+...+...+.. +             ...++                        ...+..+++++.+||.+||++|
T Consensus       229 ~~~~~~~~~~~i~~-~-------------~~~~~------------------------~~~~~~~s~~~~~li~~~L~~d  270 (352)
T d1koba_         229 AGEDDLETLQNVKR-C-------------DWEFD------------------------EDAFSSVSPEAKDFIKNLLQKE  270 (352)
T ss_dssp             CCSSHHHHHHHHHH-C-------------CCCCC------------------------SSTTTTSCHHHHHHHHTTSCSS
T ss_pred             CCCCHHHHHHHHHh-C-------------CCCCC------------------------cccccCCCHHHHHHHHHHccCC
Confidence            98777544332211 0             11111                        1223467899999999999999


Q ss_pred             CCCCCCHHHHhcCCCCccchh
Q 004835          673 PRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      |.+|||++|+|+||||+....
T Consensus       271 p~~R~s~~eil~Hp~~~~~~~  291 (352)
T d1koba_         271 PRKRLTVHDALEHPWLKGDHS  291 (352)
T ss_dssp             GGGSCCHHHHHTSTTTSSCCT
T ss_pred             hhHCcCHHHHhcCHhhCCCcc
Confidence            999999999999999986543

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-51  Score=436.99  Aligned_cols=255  Identities=26%  Similarity=0.396  Sum_probs=215.0

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccC-----cCchhHHHHHHHHHH-hcCCCCceEEecceEEeCCeeE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHA-----NASKHYVSNELRMLE-RFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~-----~~~~~~~~~Ei~iL~-~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      +++|++++.||+|+||+||+|+++.+|+.||||++++     ....+.+.+|..++. .++||| |+++++++.+++..|
T Consensus         1 iddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~-Iv~~~~~~~~~~~~y   79 (320)
T d1xjda_           1 IEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPF-LTHMFCTFQTKENLF   79 (320)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTT-BCCEEEEEECSSEEE
T ss_pred             CCCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCc-EEEEEEEEccCCcee
Confidence            4789999999999999999999999999999999864     233455667777765 689999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          274 FVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      +||||+.+|++..++.   .+++..++.++.||+.||.|||++||+||||||+|||++ +.+.+||+|||+|+...... 
T Consensus        80 ivmEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~-~~~~~kl~DFG~a~~~~~~~-  157 (320)
T d1xjda_          80 FVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLD-KDGHIKIADFGMCKENMLGD-  157 (320)
T ss_dssp             EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEEC-TTSCEEECCCTTCBCCCCTT-
T ss_pred             EEEeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeec-CCCceeccccchhhhccccc-
Confidence            9999999999887763   489999999999999999999999999999999999999 67789999999997421000 


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (320)
T d1xjda_         158 --------------------------------------------------------------------------------  157 (320)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (320)
T d1xjda_         158 --------------------------------------------------------------------------------  157 (320)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                         ...+..+||+.|+|||++.+.. |+.++|||||||++|+|++|+.
T Consensus       158 -----------------------------------~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwSlGvilyemltG~~  201 (320)
T d1xjda_         158 -----------------------------------AKTNTFCGTPDYIAPEILLGQK-YNHSVDWWSFGVLLYEMLIGQS  201 (320)
T ss_dssp             -----------------------------------CCBCCCCSCGGGCCHHHHTTCC-BCTHHHHHHHHHHHHHHHHSSC
T ss_pred             -----------------------------------ccccccCCCCCcCCHHHHcCCC-CCchhhhhhhhHHHHHHHhCCC
Confidence                                               0112346999999999996655 6999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          591 PFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       591 PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      ||.+.+...+...+.                                          ...+.++..+++++.+||.+||.
T Consensus       202 PF~~~~~~~~~~~i~------------------------------------------~~~~~~p~~~s~~~~dli~~~L~  239 (320)
T d1xjda_         202 PFHGQDEEELFHSIR------------------------------------------MDNPFYPRWLEKEAKDLLVKLFV  239 (320)
T ss_dssp             SSCCSSHHHHHHHHH------------------------------------------HCCCCCCTTSCHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHH------------------------------------------cCCCCCCccCCHHHHHHHHHhcc
Confidence            999988766544332                                          12234455688999999999999


Q ss_pred             cCCCCCCCHH-HHhcCCCCccchhcc
Q 004835          671 VNPRLRISAE-DALKHEFFAPCHEML  695 (728)
Q Consensus       671 ~dP~~Rpta~-e~L~Hp~f~~~~~~~  695 (728)
                      .||++|||+. ++++||||+++.+..
T Consensus       240 ~dP~~R~s~~~~l~~hpff~~~~~~~  265 (320)
T d1xjda_         240 REPEKRLGVRGDIRQHPLFREINWEE  265 (320)
T ss_dssp             SSGGGSBTTBSCGGGSGGGTTCCHHH
T ss_pred             cCCCCCcCHHHHHHhCchhccCCHHH
Confidence            9999999996 899999999987543

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-50  Score=436.98  Aligned_cols=279  Identities=27%  Similarity=0.464  Sum_probs=223.7

Q ss_pred             CeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeC------CeeEEE
Q 004835          202 SFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCG------DSDCFV  275 (728)
Q Consensus       202 ~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~------~~~~LV  275 (728)
                      +|..+++||+|+||+||+|++..+|+.||||++.....  ...+|+.+|++++|+| |++++++|...      .++|||
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~--~~~~Ei~il~~l~h~n-iv~~~~~~~~~~~~~~~~~~~lv   97 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR--FKNRELQIMRKLDHCN-IVRLRYFFYSSGEKKDEVYLNLV   97 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS--SCCHHHHHHHHCCCTT-BCCEEEEEEEC--CCSCCEEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch--HHHHHHHHHHhcCCCC-CCcEEEEEEecCccCCceEEEEE
Confidence            79999999999999999999999999999999875432  2347999999999999 99999988542      357999


Q ss_pred             EeccCCCChHHHhh------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          276 LEHVKHDRPEVLKK------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       276 ~E~~~~~~l~~l~~------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      |||++++++..+..      .+++..++.++.||+.||+|||++||+||||||+||||+.++..+||+|||++...... 
T Consensus        98 ~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~-  176 (350)
T d1q5ka_          98 LDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG-  176 (350)
T ss_dssp             EECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTT-
T ss_pred             EeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhccCC-
Confidence            99999886655432      38999999999999999999999999999999999999966678999999998752110 


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (350)
T d1q5ka_         177 --------------------------------------------------------------------------------  176 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (350)
T d1q5ka_         177 --------------------------------------------------------------------------------  176 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                          ......+||+.|+|||++.+...|+.++||||+||++|||++|+
T Consensus       177 ------------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~  220 (350)
T d1q5ka_         177 ------------------------------------EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQ  220 (350)
T ss_dssp             ------------------------------------SCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTS
T ss_pred             ------------------------------------cccccccccccccChHHhhcccCCCcceeecccceEEEehhhCC
Confidence                                                00113468999999999988777899999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          590 TPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       590 ~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      +||.+.+. +.+..+++.+|++....+.........        ...+......|.+.      ....+++++.|||.+|
T Consensus       221 ~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~------~~~~~s~~~~dLl~~m  286 (350)
T d1q5ka_         221 PIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTE--------FKFPQIKAHPWTKV------FRPRTPPEAIALCSRL  286 (350)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---C--------CCCCCCCCCCGGGT------SCTTSCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhh--------ccccccccCchhhh------cccCCCHHHHHHHHHH
Confidence            99988766 678889999998765555443322111        11222222223221      2245788999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCccchhc
Q 004835          669 LTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      |.+||++||||.|+|+||||+++.+.
T Consensus       287 L~~dP~~R~ta~e~L~Hp~f~~~~~~  312 (350)
T d1q5ka_         287 LEYTPTARLTPLEACAHSFFDELRDP  312 (350)
T ss_dssp             SCSSGGGSCCHHHHHTSGGGGGGGCT
T ss_pred             ccCChhHCcCHHHHhcCHhhccccCC
Confidence            99999999999999999999988764

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-50  Score=427.30  Aligned_cols=276  Identities=27%  Similarity=0.397  Sum_probs=213.8

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCC-CeEEEEEeccCc----CchhHHHHHHHHHHhc---CCCCceEEecceEEe----
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKND-GTVVAIKCPHAN----ASKHYVSNELRMLERF---GGKNFIIKYEGCFKC----  268 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~-g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L---~h~n~Ivkl~~~~~~----  268 (728)
                      ++|++++.||+|+||+||+|++..+ ++.||||+++..    .....+.+|+.+|+.|   +||| |++++++|..    
T Consensus         7 ~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~Hpn-Iv~~~~~~~~~~~~   85 (305)
T d1blxa_           7 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPN-VVRLFDVCTVSRTD   85 (305)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTT-BCCEEEEEEEEECS
T ss_pred             CCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCC-cceeeeeecccccc
Confidence            5899999999999999999999655 678999998642    2234566888887766   6898 9999998853    


Q ss_pred             -CCeeEEEEeccCCCChHHHh----hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          269 -GDSDCFVLEHVKHDRPEVLK----KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       269 -~~~~~LV~E~~~~~~l~~l~----~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                       ....|++|||+.++.+....    ..+++..++.++.||+.||+|||++|||||||||+|||++ +.+.+||+|||++.
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~-~~~~~kl~dfg~~~  164 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVT-SSGQIKLADFGLAR  164 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTCCEEECSCCSCC
T ss_pred             cCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEc-CCCCeeecchhhhh
Confidence             34789999999998776543    2388999999999999999999999999999999999999 66789999999986


Q ss_pred             cccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCc
Q 004835          344 VGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGI  423 (728)
Q Consensus       344 ~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~  423 (728)
                      .....                                                                           
T Consensus       165 ~~~~~---------------------------------------------------------------------------  169 (305)
T d1blxa_         165 IYSFQ---------------------------------------------------------------------------  169 (305)
T ss_dssp             CCCGG---------------------------------------------------------------------------
T ss_pred             hhccc---------------------------------------------------------------------------
Confidence            41100                                                                           


Q ss_pred             cccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccc
Q 004835          424 TSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAV  503 (728)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (728)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (305)
T d1blxa_         170 --------------------------------------------------------------------------------  169 (305)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHH
Q 004835          504 AGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLL  583 (728)
Q Consensus       504 ~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~  583 (728)
                                                                ......+||+.|+|||++.+.. |+.++||||+||++|
T Consensus       170 ------------------------------------------~~~~~~~gT~~Y~APE~~~~~~-y~~~~DiwSlG~il~  206 (305)
T d1blxa_         170 ------------------------------------------MALTSVVVTLWYRAPEVLLQSS-YATPVDLWSVGCIFA  206 (305)
T ss_dssp             ------------------------------------------GGGCCCCCCCTTCCHHHHTTCC-CCTHHHHHHHHHHHH
T ss_pred             ------------------------------------------ccCCCcccChhhcCcchhcCCC-CChhehhhchHHHHH
Confidence                                                      0011346999999999996655 699999999999999


Q ss_pred             HHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHH
Q 004835          584 YLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF  662 (728)
Q Consensus       584 eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (728)
                      ||++|++||.+.+. +.+..+++..|.+.......    ....+....  .....          .....+...+++.+.
T Consensus       207 ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~----------~~~~~~~~~~s~~~~  270 (305)
T d1blxa_         207 EMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPR----DVALPRQAF--HSKSA----------QPIEKFVTDIDELGK  270 (305)
T ss_dssp             HHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCT----TCSSCGGGS--CCCCC----------CCGGGTCCSCCHHHH
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccc----cccchhhhh--ccccc----------cchhhccccCCHHHH
Confidence            99999999998776 56788888888643221100    000111000  00000          011234567889999


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCccch
Q 004835          663 DLVDKCLTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       663 dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      |||.+||.+||++||||+|+|+||||+++.
T Consensus       271 dli~~mL~~dP~~R~sa~e~L~Hpff~~i~  300 (305)
T d1blxa_         271 DLLLKCLTFNPAKRISAYSALSHPYFQDLE  300 (305)
T ss_dssp             HHHHHHSCSSTTTSCCHHHHHTSGGGTTCC
T ss_pred             HHHHHHCcCChhHCcCHHHHhcChhhcCch
Confidence            999999999999999999999999999875

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.4e-50  Score=424.56  Aligned_cols=278  Identities=26%  Similarity=0.378  Sum_probs=220.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      +++|+++++||+|+||+||+|+++ +|+.||||+++...    ....+.+|+.+|++++|+| |++++++|...+..|++
T Consensus         1 ~~~Y~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpn-Iv~~~~~~~~~~~~~i~   78 (286)
T d1ob3a_           1 MEKYHGLEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN-IVKLYDVIHTKKRLVLV   78 (286)
T ss_dssp             CCSEEEEEEEEEETTEEEEEEEET-TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTT-BCCEEEEEECSSCEEEE
T ss_pred             CCCceeccEEecCCCcEEEEEEeC-CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCc-EEeeeeecccCCceeEE
Confidence            479999999999999999999996 78999999986532    3467889999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      |||+.++++..+..   .+++..++.|+.||+.||+|||++|||||||||+||||+ .++.+||+|||+|.......   
T Consensus        79 ~e~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~-~~~~~kl~DfG~a~~~~~~~---  154 (286)
T d1ob3a_          79 FEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLIN-REGELKIADFGLARAFGIPV---  154 (286)
T ss_dssp             EECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTSCEEECCTTHHHHHCC-----
T ss_pred             EEeehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEc-CCCCEEecccccceecccCc---
Confidence            99999998877754   389999999999999999999999999999999999999 66789999999997521100   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (286)
T d1ob3a_         155 --------------------------------------------------------------------------------  154 (286)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (286)
T d1ob3a_         155 --------------------------------------------------------------------------------  154 (286)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                       ......+||+.|+|||++.+...++.++|||||||++|||++|++||
T Consensus       155 ---------------------------------~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf  201 (286)
T d1ob3a_         155 ---------------------------------RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLF  201 (286)
T ss_dssp             ----------------------------------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ---------------------------------cccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCC
Confidence                                             00113358999999999988777899999999999999999999999


Q ss_pred             CCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhccc
Q 004835          593 FGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTV  671 (728)
Q Consensus       593 ~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~  671 (728)
                      .+.+. +++..++..+|.+..........    .+...   ..........       ...+...+++.+.|||.+||.+
T Consensus       202 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~-------~~~~~~~~s~~~~dli~~~L~~  267 (286)
T d1ob3a_         202 PGVSEADQLMRIFRILGTPNSKNWPNVTE----LPKYD---PNFTVYEPLP-------WESFLKGLDESGIDLLSKMLKL  267 (286)
T ss_dssp             CCSSHHHHHHHHHHHHCCCCTTTSTTGGG----STTCC---TTCCCCCCCC-------GGGTCCSCCHHHHHHHHHHTCS
T ss_pred             CCCCHHHHHHHHHHhhCCCChhhccchhh----hhhcc---cccccccCcc-------hhhhcccCCHHHHHHHHHHccC
Confidence            88765 56788888888643221111000    00000   0000011111       1234567889999999999999


Q ss_pred             CCCCCCCHHHHhcCCCCcc
Q 004835          672 NPRLRISAEDALKHEFFAP  690 (728)
Q Consensus       672 dP~~Rpta~e~L~Hp~f~~  690 (728)
                      ||++||||+|+|+||||++
T Consensus       268 dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         268 DPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             STTTSCCHHHHHTSGGGGC
T ss_pred             ChhHCcCHHHHhcCcccCc
Confidence            9999999999999999985

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-51  Score=424.40  Aligned_cols=245  Identities=24%  Similarity=0.350  Sum_probs=204.9

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC--------chhHHHHHHHHHHhcC--CCCceEEecceEEeCC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA--------SKHYVSNELRMLERFG--GKNFIIKYEGCFKCGD  270 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~--------~~~~~~~Ei~iL~~L~--h~n~Ivkl~~~~~~~~  270 (728)
                      ++|++.+.||+|+||+||+|++..+|+.||||++....        ...++.+|+.++++++  |+| |++++++|...+
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~n-Iv~~~~~~~~~~   82 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG-VIRLLDWFERPD   82 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCS-BCCEEEEEECSS
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCC-ccEEEEEEeeCC
Confidence            58999999999999999999999999999999986431        1234668999999997  777 999999999999


Q ss_pred             eeEEEEeccCC-CChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccccc
Q 004835          271 SDCFVLEHVKH-DRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGF  346 (728)
Q Consensus       271 ~~~LV~E~~~~-~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~  346 (728)
                      ..|+||||+.+ +++..+.   ..+++..++.++.||+.||.|||++|||||||||+|||++.+++.+||+|||+|+...
T Consensus        83 ~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~  162 (273)
T d1xwsa_          83 SFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLK  162 (273)
T ss_dssp             EEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred             eEEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceecc
Confidence            99999999976 4554443   2489999999999999999999999999999999999999666789999999997411


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ..                                                                              
T Consensus       163 ~~------------------------------------------------------------------------------  164 (273)
T d1xwsa_         163 DT------------------------------------------------------------------------------  164 (273)
T ss_dssp             SS------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (273)
T d1xwsa_         165 --------------------------------------------------------------------------------  164 (273)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHh
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLM  586 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLl  586 (728)
                                                              ..+..+||+.|+|||++.+...++.++|||||||++|||+
T Consensus       165 ----------------------------------------~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell  204 (273)
T d1xwsa_         165 ----------------------------------------VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMV  204 (273)
T ss_dssp             ----------------------------------------CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------cccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHh
Confidence                                                    0113469999999999977776688899999999999999


Q ss_pred             cCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHH
Q 004835          587 IGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       587 tG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      +|+.||.+..  .   +++                                           ....++..+|+++.+||.
T Consensus       205 ~g~~Pf~~~~--~---i~~-------------------------------------------~~~~~~~~~s~~~~~li~  236 (273)
T d1xwsa_         205 CGDIPFEHDE--E---IIR-------------------------------------------GQVFFRQRVSSECQHLIR  236 (273)
T ss_dssp             HSSCSCCSHH--H---HHH-------------------------------------------CCCCCSSCCCHHHHHHHH
T ss_pred             hCCCCCCCch--H---Hhh-------------------------------------------cccCCCCCCCHHHHHHHH
Confidence            9999997531  1   110                                           112234567899999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccch
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCH  692 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~  692 (728)
                      +||..||++|||++|+|+||||+++.
T Consensus       237 ~~L~~dp~~R~s~~eil~hp~~~~~~  262 (273)
T d1xwsa_         237 WCLALRPSDRPTFEEIQNHPWMQDVL  262 (273)
T ss_dssp             HHTCSSGGGSCCHHHHHTSGGGSSCC
T ss_pred             HHccCCHhHCcCHHHHhcCHhhCCCC
Confidence            99999999999999999999999864

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=6.8e-50  Score=419.55  Aligned_cols=255  Identities=25%  Similarity=0.384  Sum_probs=211.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----------hhHHHHHHHHHHhcC-CCCceEEecceEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----------KHYVSNELRMLERFG-GKNFIIKYEGCFK  267 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----------~~~~~~Ei~iL~~L~-h~n~Ivkl~~~~~  267 (728)
                      .++|++.+.||+|+||+||+|++..+|+.||||++.....           .+.+.+|+.+++++. |+| |+++++++.
T Consensus         2 ~~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpn-Iv~~~~~~~   80 (277)
T d1phka_           2 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPN-IIQLKDTYE   80 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTT-BCCEEEEEE
T ss_pred             cccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEEeecc
Confidence            4689999999999999999999999999999999865321           235789999999997 888 999999999


Q ss_pred             eCCeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +++..||||||+++++|..+++   .+++..++.++.||+.||+|||++||+||||||+||||+ .++.+||+|||+++.
T Consensus        81 ~~~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~-~~~~~kl~DFG~a~~  159 (277)
T d1phka_          81 TNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLD-DDMNIKLTDFGFSCQ  159 (277)
T ss_dssp             CSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTCCEEECCCTTCEE
T ss_pred             cCcceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEc-CCCCeEEccchheeE
Confidence            9999999999999988877653   389999999999999999999999999999999999999 677899999999975


Q ss_pred             ccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcc
Q 004835          345 GFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGIT  424 (728)
Q Consensus       345 ~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~  424 (728)
                      ....                                                                            
T Consensus       160 ~~~~----------------------------------------------------------------------------  163 (277)
T d1phka_         160 LDPG----------------------------------------------------------------------------  163 (277)
T ss_dssp             CCTT----------------------------------------------------------------------------
T ss_pred             ccCC----------------------------------------------------------------------------
Confidence            2110                                                                            


Q ss_pred             ccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccc
Q 004835          425 SAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVA  504 (728)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  504 (728)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (277)
T d1phka_         164 --------------------------------------------------------------------------------  163 (277)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhc-----cCCCCCchhHHHHH
Q 004835          505 GAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFR-----SQHQGPKLDIWSAG  579 (728)
Q Consensus       505 ~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~-----~~~~~~~~DIWSlG  579 (728)
                                                               ......+||+.|+|||++.+     ...++.++||||+|
T Consensus       164 -----------------------------------------~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslG  202 (277)
T d1phka_         164 -----------------------------------------EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTG  202 (277)
T ss_dssp             -----------------------------------------CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHH
T ss_pred             -----------------------------------------CceeeeeccCCCCCHHHhhccccccCCCCCchheEcccc
Confidence                                                     00113469999999999853     23468899999999


Q ss_pred             HHHHHHhcCCCCCCCCChHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCch
Q 004835          580 VTLLYLMIGRTPFFGDPEQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPS  659 (728)
Q Consensus       580 ~il~eLltG~~PF~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (728)
                      |++|+|++|+.||.+.+...+...+. .|             ...+                        .......+|+
T Consensus       203 vilyeml~g~~Pf~~~~~~~~~~~i~-~~-------------~~~~------------------------~~~~~~~~s~  244 (277)
T d1phka_         203 VIMYTLLAGSPPFWHRKQMLMLRMIM-SG-------------NYQF------------------------GSPEWDDYSD  244 (277)
T ss_dssp             HHHHHHHHSSCSSCCSSHHHHHHHHH-HT-------------CCCC------------------------CTTTGGGSCH
T ss_pred             hhhhhhccCCCCCCCCCHHHHHHHHH-hC-------------CCCC------------------------CCcccccCCH
Confidence            99999999999999887755443221 01             0000                        1112246889


Q ss_pred             hHHHHHHHhcccCCCCCCCHHHHhcCCCCccc
Q 004835          660 SLFDLVDKCLTVNPRLRISAEDALKHEFFAPC  691 (728)
Q Consensus       660 ~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~  691 (728)
                      ++.+||.+||..||++|||++|+|+||||+..
T Consensus       245 ~~~~li~~~L~~~p~~R~s~~eil~h~~~~~~  276 (277)
T d1phka_         245 TVKDLVSRFLVVQPQKRYTAEEALAHPFFQQY  276 (277)
T ss_dssp             HHHHHHHHHCCSSGGGSCCHHHHTTSGGGCTT
T ss_pred             HHHHHHHHHccCChhHCcCHHHHHcCHHHHHh
Confidence            99999999999999999999999999999863

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-50  Score=429.76  Aligned_cols=254  Identities=23%  Similarity=0.366  Sum_probs=211.5

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-hhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      +++|++.+.||+|+||+||+|+++.+|+.||||+++.... ...+.+|+.+|..++|+| |++++++|.+.+.+|+||||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~Hpn-Iv~~~~~~~~~~~~~lvmE~   82 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRN-ILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTT-BCCEEEEEEETTEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCC-CCeEEEEEEECCEEEEEEec
Confidence            5789999999999999999999999999999999986543 345789999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC-CCceEEEeeeccccccCCCCccc
Q 004835          279 VKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK-AVKGYLIDFNLAMVGFDGSFNQA  353 (728)
Q Consensus       279 ~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~-~~~~kL~DFGlA~~~~~~~~~~~  353 (728)
                      |.++.|..++.    .+++.+++.|+.||+.||.|||++||+||||||+|||++.+ ...+||+|||+++......    
T Consensus        83 ~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~----  158 (321)
T d1tkia_          83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD----  158 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC----
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccCC----
Confidence            99988876653    38999999999999999999999999999999999999843 4578999999987521100    


Q ss_pred             cCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccccccC
Q 004835          354 TLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATSTR  433 (728)
Q Consensus       354 ~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  433 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (321)
T d1tkia_         159 --------------------------------------------------------------------------------  158 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCCC
Q 004835          434 TPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKGP  513 (728)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (728)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (321)
T d1tkia_         159 --------------------------------------------------------------------------------  158 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCCC
Q 004835          514 SDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPFF  593 (728)
Q Consensus       514 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF~  593 (728)
                                                       ......||+.|+|||++.+.. |+.++|||||||++|+|++|.+||.
T Consensus       159 ---------------------------------~~~~~~~t~~y~ape~~~~~~-~~~~~DiWSlGvily~ll~G~~Pf~  204 (321)
T d1tkia_         159 ---------------------------------NFRLLFTAPEYYAPEVHQHDV-VSTATDMWSLGTLVYVLLSGINPFL  204 (321)
T ss_dssp             ---------------------------------EEEEEESCGGGSCHHHHTTCE-ECHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ---------------------------------cccccccccccccchhccCCC-CCchhhcccHHHHHHHHHhCCCCCC
Confidence                                             001235899999999985554 6999999999999999999999999


Q ss_pred             CCChHHHHH-HHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcccC
Q 004835          594 GDPEQNIKD-IAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLTVN  672 (728)
Q Consensus       594 ~~~~~~l~~-i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~~d  672 (728)
                      +.+...+.. |+.               ....|+.                        ..+..+++++.+||.+||..|
T Consensus       205 ~~~~~~~~~~i~~---------------~~~~~~~------------------------~~~~~~s~~~~~li~~~L~~d  245 (321)
T d1tkia_         205 AETNQQIIENIMN---------------AEYTFDE------------------------EAFKEISIEAMDFVDRLLVKE  245 (321)
T ss_dssp             CSSHHHHHHHHHH---------------TCCCCCH------------------------HHHTTSCHHHHHHHHTTSCSS
T ss_pred             CCCHHHHHHHHHh---------------CCCCCCh------------------------hhccCCCHHHHHHHHHHccCC
Confidence            887755433 221               1111111                        122457899999999999999


Q ss_pred             CCCCCCHHHHhcCCCCccc
Q 004835          673 PRLRISAEDALKHEFFAPC  691 (728)
Q Consensus       673 P~~Rpta~e~L~Hp~f~~~  691 (728)
                      |.+|||++|+|+||||++-
T Consensus       246 p~~R~s~~eil~hp~~~~~  264 (321)
T d1tkia_         246 RKSRMTASEALQHPWLKQK  264 (321)
T ss_dssp             GGGSCCHHHHHHSHHHHSC
T ss_pred             hhHCcCHHHHhcCHhhccC
Confidence            9999999999999999753

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-49  Score=426.19  Aligned_cols=281  Identities=27%  Similarity=0.427  Sum_probs=214.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc----hhHHHHHHHHHHhcCCCCceEEecceEEeCC------
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS----KHYVSNELRMLERFGGKNFIIKYEGCFKCGD------  270 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~------  270 (728)
                      ++|++++.||+|+||+||+|+++.+|+.||||+++....    .+.+.+|+.+|+.++|+| |++++++|...+      
T Consensus        18 ~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpn-iv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          18 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHEN-VIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTT-BCCCSEEECSCSSTTTCC
T ss_pred             CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCC-eeEEEEEeccCccccccc
Confidence            689999999999999999999999999999999875422    346789999999999999 999999997654      


Q ss_pred             eeEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCC
Q 004835          271 SDCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDG  348 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~  348 (728)
                      .+|+||||++.. +..+.+  .+++..++.++.||+.||.|||++|||||||||+|||++ .++.+||+|||+|+.... 
T Consensus        97 ~~~lv~e~~~~~-l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~-~~~~~kl~Dfg~a~~~~~-  173 (346)
T d1cm8a_          97 DFYLVMPFMGTD-LGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVN-EDCELKILDFGLARQADS-  173 (346)
T ss_dssp             CCEEEEECCSEE-HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTCCEEECCCTTCEECCS-
T ss_pred             eEEEEEeccccc-HHHHHHhccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcc-cccccccccccceeccCC-
Confidence            579999999544 444433  499999999999999999999999999999999999999 677899999999974110 


Q ss_pred             CCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccc
Q 004835          349 SFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKE  428 (728)
Q Consensus       349 ~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~  428 (728)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (346)
T d1cm8a_         174 --------------------------------------------------------------------------------  173 (346)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCC
Q 004835          429 ATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGL  508 (728)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (728)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (346)
T d1cm8a_         174 --------------------------------------------------------------------------------  173 (346)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcC
Q 004835          509 MNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIG  588 (728)
Q Consensus       509 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG  588 (728)
                                                            ..+..+||+.|+|||++.+...++.++||||+||++|+|++|
T Consensus       174 --------------------------------------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g  215 (346)
T d1cm8a_         174 --------------------------------------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITG  215 (346)
T ss_dssp             --------------------------------------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHS
T ss_pred             --------------------------------------ccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHC
Confidence                                                  011346899999999998877789999999999999999999


Q ss_pred             CCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHH
Q 004835          589 RTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDK  667 (728)
Q Consensus       589 ~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~  667 (728)
                      ++||.+.+. +.+..+....|.+..........     ..........+......|.       .....+++.+.|||.+
T Consensus       216 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~~~~~s~~~~dli~~  283 (346)
T d1cm8a_         216 KTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQS-----DEAKNYMKGLPELEKKDFA-------SILTNASPLAVNLLEK  283 (346)
T ss_dssp             SCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSC-----HHHHHHHHHSCCCCCCCGG-------GTCTTCCHHHHHHHHH
T ss_pred             cCCCCCCChHHHHHHHHhccCCCcHHHHhhhcc-----hhhhhhhccCCcccccchH-------HhccCCCHHHHHHHHH
Confidence            999998776 56777788888755433221110     0000000111111111121       2234678899999999


Q ss_pred             hcccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          668 CLTVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       668 ~L~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      ||.+||.+||||+|+|+||||++++...
T Consensus       284 mL~~dP~~R~ta~eiL~Hp~f~~~~~~~  311 (346)
T d1cm8a_         284 MLVLDAEQRVTAGEALAHPYFESLHDTE  311 (346)
T ss_dssp             HSCSSTTTSCCHHHHHHSGGGTTTC---
T ss_pred             HCcCChhHCcCHHHHhcChhhCcCCCcc
Confidence            9999999999999999999999987544

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-49  Score=417.06  Aligned_cols=287  Identities=25%  Similarity=0.352  Sum_probs=212.7

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEe------
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKC------  268 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~------  268 (728)
                      .+++|+++++||+|+||+||+|++..+|+.||||++...    .....+.+|+.+|++++|+| |+++++.+..      
T Consensus         8 ~~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~n-ii~~~~~~~~~~~~~~   86 (318)
T d3blha1           8 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN-VVNLIEICRTKASPYN   86 (318)
T ss_dssp             BGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTT-BCCEEEEEEC------
T ss_pred             ccCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCC-ccceEeeeeccccccc
Confidence            468999999999999999999999999999999998643    23456889999999999999 8888888754      


Q ss_pred             --CCeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccc
Q 004835          269 --GDSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAM  343 (728)
Q Consensus       269 --~~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~  343 (728)
                        ....|+||||+.++++..+..   .+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||++.
T Consensus        87 ~~~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~-~~~~~kl~dfg~~~  165 (318)
T d3blha1          87 RCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLIT-RDGVLKLADFGLAR  165 (318)
T ss_dssp             ----CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTSCEEECCCTTCE
T ss_pred             ccCceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeec-CCCcEEeeecceee
Confidence              356899999999988776643   488999999999999999999999999999999999999 66789999999997


Q ss_pred             cccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCc
Q 004835          344 VGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGI  423 (728)
Q Consensus       344 ~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~  423 (728)
                      ........                                                                        
T Consensus       166 ~~~~~~~~------------------------------------------------------------------------  173 (318)
T d3blha1         166 AFSLAKNS------------------------------------------------------------------------  173 (318)
T ss_dssp             ECCC----------------------------------------------------------------------------
T ss_pred             eccccccc------------------------------------------------------------------------
Confidence            52111000                                                                        


Q ss_pred             cccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCccc
Q 004835          424 TSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAV  503 (728)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (728)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (318)
T d3blha1         174 --------------------------------------------------------------------------------  173 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHH
Q 004835          504 AGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLL  583 (728)
Q Consensus       504 ~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~  583 (728)
                                                              ........+||+.|+|||++.+...|+.++||||+||++|
T Consensus       174 ----------------------------------------~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~  213 (318)
T d3blha1         174 ----------------------------------------QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMA  213 (318)
T ss_dssp             -----------------------------------------CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHH
T ss_pred             ----------------------------------------ccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceee
Confidence                                                    0001113469999999999987777899999999999999


Q ss_pred             HHhcCCCCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHH
Q 004835          584 YLMIGRTPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLF  662 (728)
Q Consensus       584 eLltG~~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (728)
                      ||++|++||.+.++ ..+..+.+..|+...............  ...   .............+      -....++.++
T Consensus       214 el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~------~~~~~~~~~~  282 (318)
T d3blha1         214 EMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELY--EKL---ELVKGQKRKVKDRL------KAYVRDPYAL  282 (318)
T ss_dssp             HHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC------------CCSSCCBCHHHHH------HHHHCCHHHH
T ss_pred             eHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhh--hhh---cccccccccchhhh------ccccCCHHHH
Confidence            99999999998776 456667777775331100000000000  000   00000000000000      0113467889


Q ss_pred             HHHHHhcccCCCCCCCHHHHhcCCCCcc
Q 004835          663 DLVDKCLTVNPRLRISAEDALKHEFFAP  690 (728)
Q Consensus       663 dLi~~~L~~dP~~Rpta~e~L~Hp~f~~  690 (728)
                      |||.+||.+||++||||+|+|+||||+.
T Consensus       283 dLl~~mL~~dP~~R~sa~elL~Hpff~~  310 (318)
T d3blha1         283 DLIDKLLVLDPAQRIDSDDALNHDFFWS  310 (318)
T ss_dssp             HHHHHHSCSSTTTSCCHHHHHHSGGGSS
T ss_pred             HHHHHHCcCChhHCcCHHHHHcChhhcc
Confidence            9999999999999999999999999985

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-49  Score=410.74  Aligned_cols=282  Identities=25%  Similarity=0.383  Sum_probs=220.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEE
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFV  275 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV  275 (728)
                      +++|+++++||+|+||+||+|++..+|+.||||+++...    ...++.+|+.+|+.++|+| |+++++++......++|
T Consensus         1 ~~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~n-iv~~~~~~~~~~~~~iv   79 (292)
T d1unla_           1 MQKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN-IVRLHDVLHSDKKLTLV   79 (292)
T ss_dssp             CCSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTT-BCCEEEEEECSSEEEEE
T ss_pred             CCCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCC-EEeeccccccccceeEE
Confidence            468999999999999999999999999999999986432    2456889999999999999 99999999999999999


Q ss_pred             EeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCCcc
Q 004835          276 LEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSFNQ  352 (728)
Q Consensus       276 ~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~~~  352 (728)
                      ++++.++.+..+..   .+++..++.++.|++.||+|||++|||||||||+||||+ .++.+||+|||.|+......   
T Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~-~~~~~kl~DFG~a~~~~~~~---  155 (292)
T d1unla_          80 FEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLIN-RNGELKLANFGLARAFGIPV---  155 (292)
T ss_dssp             EECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC-TTCCEEECCCTTCEECCSCC---
T ss_pred             eeeccccccccccccccccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccc-cCCceeeeecchhhcccCCC---
Confidence            99999988877653   488999999999999999999999999999999999999 56689999999997521100   


Q ss_pred             ccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccccc
Q 004835          353 ATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEATST  432 (728)
Q Consensus       353 ~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~~~  432 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (292)
T d1unla_         156 --------------------------------------------------------------------------------  155 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCCCC
Q 004835          433 RTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMNKG  512 (728)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (728)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (292)
T d1unla_         156 --------------------------------------------------------------------------------  155 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCCCC
Q 004835          513 PSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRTPF  592 (728)
Q Consensus       513 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~PF  592 (728)
                                                       .......+++.|+|||++.+...++.++||||+||++|||++|+.||
T Consensus       156 ---------------------------------~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~  202 (292)
T d1unla_         156 ---------------------------------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPL  202 (292)
T ss_dssp             ---------------------------------SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCS
T ss_pred             ---------------------------------ccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCC
Confidence                                             00112346888999999977776799999999999999999999987


Q ss_pred             CC-CCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhcc
Q 004835          593 FG-DPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCLT  670 (728)
Q Consensus       593 ~~-~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L~  670 (728)
                      +. .+. +.+..+....|.+..........        .......+      ..............+++.+.|||.+||.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~------~~~~~~~~~~~~~~~s~~~~dll~~mL~  268 (292)
T d1unla_         203 FPGNDVDDQLKRIFRLLGTPTEEQWPSMTK--------LPDYKPYP------MYPATTSLVNVVPKLNATGRDLLQNLLK  268 (292)
T ss_dssp             CCCSSHHHHHHHHHHHHCCCCTTTCTTGGG--------STTCCCCC------CCCTTCCCTTTSTTCCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHhhcCCCChhhhhhhhh--------cccccccc------cccccchhhhccccCCHHHHHHHHHHcc
Confidence            54 333 45666666666533211110000        00000000      0011112233446678899999999999


Q ss_pred             cCCCCCCCHHHHhcCCCCccchh
Q 004835          671 VNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       671 ~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      +||.+||||+|+|+||||+++..
T Consensus       269 ~dP~~R~sa~e~L~Hp~f~~~~~  291 (292)
T d1unla_         269 CNPVQRISAEEALQHPYFSDFCP  291 (292)
T ss_dssp             SSGGGSCCHHHHTTSGGGSSCSC
T ss_pred             CChhHCcCHHHHhcChhhcCCCC
Confidence            99999999999999999998653

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-49  Score=427.05  Aligned_cols=141  Identities=21%  Similarity=0.209  Sum_probs=122.6

Q ss_pred             CCCeeEEE-EecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhc-CCCCceEEecceEEe----CCeeE
Q 004835          200 FESFIVEE-EEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERF-GGKNFIIKYEGCFKC----GDSDC  273 (728)
Q Consensus       200 ~~~y~i~~-~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~----~~~~~  273 (728)
                      +++|.+.. .||+|+||+||+|++..+|+.||||+++.   ...+.+|+.++.++ +|+| |++++++|.+    ...+|
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~---~~~~~~E~~~~~~~~~hpn-Iv~l~~~~~~~~~~~~~~~   85 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD---CPKARREVELHWRASQCPH-IVRIVDVYENLYAGRKCLL   85 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC---SHHHHHHHHHHHHHTTSTT-BCCEEEEEEEEETTEEEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC---cHHHHHHHHHHHHhcCCCC-CCeEEEEEeecccCCCEEE
Confidence            57899875 59999999999999999999999999864   34577899987665 6888 9999999875    46789


Q ss_pred             EEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecC--CCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCK--AVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~--~~~~kL~DFGlA~~  344 (728)
                      +|||||++|+|..++.     .+++.+++.|+.||+.||+|||++||+||||||+|||++..  .+.+||+|||+|+.
T Consensus        86 ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~  163 (335)
T d2ozaa1          86 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKE  163 (335)
T ss_dssp             EEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred             EEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccceeee
Confidence            9999999988876653     38899999999999999999999999999999999999842  35699999999975

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-49  Score=424.24  Aligned_cols=291  Identities=24%  Similarity=0.315  Sum_probs=213.4

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEe------C
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKC------G  269 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~------~  269 (728)
                      +++|+++++||+|+||+||+|++..+|+.||||++....    ...++.+|+.+|++++|+| |++++++|..      .
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpn-Iv~~~~~f~~~~~~~~~   94 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN-IISLLNVFTPQKTLEEF   94 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTT-BCCCSEEECSCCSTTTC
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCC-eeEEEEEEecccccccC
Confidence            368999999999999999999999999999999987542    2345789999999999998 9999999963      3


Q ss_pred             CeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          270 DSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      .++|+||||+.++++..+...+++..++.++.||+.||.|||++||+||||||+|||++ .++.++++|||+++..... 
T Consensus        95 ~~~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~-~~~~~kl~df~~~~~~~~~-  172 (355)
T d2b1pa1          95 QDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVK-SDCTLKILDFGLARTAGTS-  172 (355)
T ss_dssp             CEEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTCCEEECCCCC--------
T ss_pred             ceeEEEEeccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccc-cccceeeechhhhhccccc-
Confidence            68899999999999988888899999999999999999999999999999999999999 5567899999998641100 


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (355)
T d2b1pa1         173 --------------------------------------------------------------------------------  172 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       173 --------------------------------------------------------------------------------  172 (355)
T d2b1pa1         173 --------------------------------------------------------------------------------  172 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                          ...+..+||+.|+|||++.+. .++.++||||+||++|+|++|+
T Consensus       173 ------------------------------------~~~~~~~~t~~y~aPE~l~~~-~~~~~~DiwSlG~~l~ell~g~  215 (355)
T d2b1pa1         173 ------------------------------------FMMTPYVVTRYYRAPEVILGM-GYKENVDIWSVGCIMGEMVRHK  215 (355)
T ss_dssp             --------------------------------------------CCTTCCHHHHTTC-CCCTTHHHHHHHHHHHHHHHSS
T ss_pred             ------------------------------------cccccccccccccChhhhcCC-CCCCCcccccccchHHHHhhCC
Confidence                                                011234689999999999765 4699999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhh--hhhccCCcccccCchhHHHHHH
Q 004835          590 TPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWC--KLITKRPDFLEVIPSSLFDLVD  666 (728)
Q Consensus       590 ~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~dLi~  666 (728)
                      +||.+.+. ..+..++...+.+....+.......   ..-................  ............+++++.|||.
T Consensus       216 ~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~  292 (355)
T d2b1pa1         216 ILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTV---RNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLS  292 (355)
T ss_dssp             CSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHH---HHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhH---HHHhhcCccccccccccccccccccccccccccCCHHHHHHHH
Confidence            99998876 4566677766653222211110000   0000000000000000000  0111112233456788999999


Q ss_pred             HhcccCCCCCCCHHHHhcCCCCccchh
Q 004835          667 KCLTVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       667 ~~L~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      +||.+||++||||+|||+||||+...+
T Consensus       293 ~mL~~dP~~R~ta~elL~Hpw~~~~~~  319 (355)
T d2b1pa1         293 KMLVIDPAKRISVDDALQHPYINVWYD  319 (355)
T ss_dssp             HHSCSSTTTSCCHHHHHTSTTTGGGCC
T ss_pred             HHCcCChhHCcCHHHHhcCcccCCCCC
Confidence            999999999999999999999997543

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.4e-48  Score=407.52  Aligned_cols=148  Identities=19%  Similarity=0.236  Sum_probs=133.8

Q ss_pred             ccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          195 KVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       195 ~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ++..+.++|++.+.||+|+||+||+|++..+|+.||||+++.. ...+.+.+|+.+|++++||| |+++++++.+++..|
T Consensus        11 ~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~Hpn-Iv~~~~~~~~~~~~~   89 (287)
T d1opja_          11 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN-LVQLLGVCTREPPFY   89 (287)
T ss_dssp             TTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTT-BCCEEEEECSSSSCE
T ss_pred             ccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCC-EecCCccEeeCCeeE
Confidence            3455667999999999999999999999999999999998754 34567899999999999999 999999999999999


Q ss_pred             EEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+++|++..+..     .+++..++.|+.||+.||+|||++|||||||||+||||+ .++.+||+|||+|+.
T Consensus        90 iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~-~~~~~Kl~DFG~a~~  164 (287)
T d1opja_          90 IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVG-ENHLVKVADFGLSRL  164 (287)
T ss_dssp             EEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC-GGGCEEECCCCCTTT
T ss_pred             EEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEEC-CCCcEEEccccceee
Confidence            9999999998776642     378999999999999999999999999999999999999 667899999999975

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-48  Score=404.26  Aligned_cols=146  Identities=18%  Similarity=0.271  Sum_probs=128.9

Q ss_pred             ccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          195 KVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       195 ~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ++....++|++.+.||+|+||+||+|++. +++.||||+++.. ...+.+.+|+.++.+++|+| |+++++++. .+..|
T Consensus         7 ~wei~~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~Hpn-Iv~~~g~~~-~~~~~   83 (272)
T d1qpca_           7 EWEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR-LVRLYAVVT-QEPIY   83 (272)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTT-BCCEEEEEC-SSSCE
T ss_pred             CeecCHHHeEEeEEEecCCCcEEEEEEEC-CCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCC-EeEEEeeec-cCCeE
Confidence            34445679999999999999999999985 6789999998754 34567899999999999999 999999875 45679


Q ss_pred             EEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+++|++..+..     .+++..+..|+.||+.||.|||+++|+||||||+||||+ +++.+||+|||+|+.
T Consensus        84 iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~-~~~~~Kl~DFGla~~  158 (272)
T d1qpca_          84 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVS-DTLSCKIADFGLARL  158 (272)
T ss_dssp             EEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-TTSCEEECCCTTCEE
T ss_pred             EEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeee-cccceeeccccceEE
Confidence            9999999999876542     389999999999999999999999999999999999999 677899999999985

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-47  Score=412.93  Aligned_cols=287  Identities=26%  Similarity=0.356  Sum_probs=213.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCC-----ee
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGD-----SD  272 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~-----~~  272 (728)
                      ++|++++.||+|+||+||+|+++.+|+.||||++.....   ...+.+|+.+|++++|++ |+++++++....     ..
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~-iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHEN-IIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTT-BCCCCEEECCSSTTTCCCE
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCC-CCcEEEEEeeccccccceE
Confidence            479999999999999999999999999999999875433   346789999999999999 999999987543     34


Q ss_pred             EEEEeccCCCChHHHh--hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCCC
Q 004835          273 CFVLEHVKHDRPEVLK--KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGSF  350 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~--~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~~  350 (728)
                      |++ +|+.+++|..+.  +.+++..++.++.||+.||+|||++|||||||||+||||+ +++.+||+|||+|........
T Consensus        87 ~l~-~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~-~~~~~kl~DfG~a~~~~~~~~  164 (345)
T d1pmea_          87 YLV-THLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLN-TTCDLKICDFGLARVADPDHD  164 (345)
T ss_dssp             EEE-EECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEC-TTCCEEECCCTTCEECCGGGC
T ss_pred             EEE-EeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEEC-CCCCEEEcccCceeeccCCCc
Confidence            555 455566666554  3599999999999999999999999999999999999999 667899999999975211000


Q ss_pred             ccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccccccc
Q 004835          351 NQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEAT  430 (728)
Q Consensus       351 ~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~~  430 (728)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (345)
T d1pmea_         165 --------------------------------------------------------------------------------  164 (345)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCCC
Q 004835          431 STRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLMN  510 (728)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (728)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (345)
T d1pmea_         165 --------------------------------------------------------------------------------  164 (345)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCCC
Q 004835          511 KGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGRT  590 (728)
Q Consensus       511 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~~  590 (728)
                                                       ........+||+.|+|||++.....++.++||||+||++|+|++|++
T Consensus       165 ---------------------------------~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~  211 (345)
T d1pmea_         165 ---------------------------------HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRP  211 (345)
T ss_dssp             ---------------------------------BCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSC
T ss_pred             ---------------------------------cceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCC
Confidence                                             00011245799999999999777677999999999999999999999


Q ss_pred             CCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHhc
Q 004835          591 PFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKCL  669 (728)
Q Consensus       591 PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~L  669 (728)
                      ||.+.+. +....+....+.+.........     +..........+......|..       ....++.++.+||.+||
T Consensus       212 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~li~~~L  279 (345)
T d1pmea_         212 IFPGKHYLDQLNHILGILGSPSQEDLNCII-----NLKARNYLLSLPHKNKVPWNR-------LFPNADSKALDLLDKML  279 (345)
T ss_dssp             SCCCSSHHHHHHHHHHHHCSCCHHHHHTCC-----CHHHHHHHHTSCCCCCCCHHH-------HCTTSCHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHhhhccCCChhhhhhhh-----hhhhhcccccCCccCCCCHHH-------hCCCCCHHHHHHHHHHc
Confidence            9988776 4555666666654433221100     000001111122222222322       22457789999999999


Q ss_pred             ccCCCCCCCHHHHhcCCCCccchhcc
Q 004835          670 TVNPRLRISAEDALKHEFFAPCHEML  695 (728)
Q Consensus       670 ~~dP~~Rpta~e~L~Hp~f~~~~~~~  695 (728)
                      .+||.+||||+|+|+||||+......
T Consensus       280 ~~dP~~R~ta~e~L~hpf~~~~~~~~  305 (345)
T d1pmea_         280 TFNPHKRIEVEQALAHPYLEQYYDPS  305 (345)
T ss_dssp             CSSTTTSCCHHHHHTSGGGTTTCCGG
T ss_pred             cCChhHCcCHHHHhcCHhhccCCCCc
Confidence            99999999999999999999766544

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-47  Score=397.74  Aligned_cols=142  Identities=19%  Similarity=0.225  Sum_probs=125.6

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      -++|++.+.||+|+||+||+|++. +++.||||+++.. ...+.+.+|+.++.+++||| |+++++++..++..|+||||
T Consensus         4 p~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~Hpn-Iv~~~g~~~~~~~~~lv~E~   81 (263)
T d1sm2a_           4 PSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK-LVQLYGVCLEQAPICLVFEF   81 (263)
T ss_dssp             CSCEEEEEEEECCSSCCEEEEEET-TTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTT-BCCEEEEECSSSSCEEEEEC
T ss_pred             hHHcEEEEEEeeCCCeEEEEEEEC-CCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCC-cccccceeccCCceEEEEEe
Confidence            458999999999999999999986 6788999998754 34567899999999999999 99999999999999999999


Q ss_pred             cCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.++++..+..    .+++..+..|+.||+.||.|||+++|+||||||+||||+ .++.+||+|||+|+.
T Consensus        82 ~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~-~~~~~Kl~DFGla~~  150 (263)
T d1sm2a_          82 MEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVG-ENQVIKVSDFGMTRF  150 (263)
T ss_dssp             CTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEEC-GGGCEEECSCC----
T ss_pred             cCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeec-CCCCeEecccchhee
Confidence            99999877643    278899999999999999999999999999999999999 667899999999975

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-47  Score=405.63  Aligned_cols=144  Identities=21%  Similarity=0.303  Sum_probs=122.8

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCCCe---EEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKNDGT---VVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~---~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      ..+.|++.++||+|+||+||+|+++.+|+   .||||++.....   .+.+.+|+.+|++++||| |+++++++..++..
T Consensus        24 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~Hpn-Iv~l~g~~~~~~~~  102 (299)
T d1jpaa_          24 DISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPN-VIHLEGVVTKSTPV  102 (299)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTT-BCCEEEEECSSSSC
T ss_pred             ChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCC-CccEEEEEeeCCEE
Confidence            34689999999999999999999986664   689998865433   356889999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||++++++..+..    .+++.++..|+.||+.||+|||++|||||||||+||||+ .++.+||+|||+|+.
T Consensus       103 ~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~-~~~~~Kl~DFGla~~  177 (299)
T d1jpaa_         103 MIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVN-SNLVCKVSDFGLSRF  177 (299)
T ss_dssp             EEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTCCEEECCC-----
T ss_pred             EEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEEC-CCCcEEECCcccceE
Confidence            99999999999887543    389999999999999999999999999999999999999 677899999999975

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-47  Score=411.19  Aligned_cols=269  Identities=23%  Similarity=0.371  Sum_probs=214.3

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEc---CCCeEEEEEeccCc------CchhHHHHHHHHHHhcCCCCceEEecceEEeC
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRK---NDGTVVAIKCPHAN------ASKHYVSNELRMLERFGGKNFIIKYEGCFKCG  269 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~---~~g~~VAIK~i~~~------~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~  269 (728)
                      .+++|++++.||+|+||+||+|++.   .+|+.||||+++..      ...+.+.+|+.++++++|+++|+++++++...
T Consensus        22 ~l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~  101 (322)
T d1vzoa_          22 GIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE  101 (322)
T ss_dssp             CGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET
T ss_pred             chhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccC
Confidence            4688999999999999999999974   46899999998642      23456789999999999976699999999999


Q ss_pred             CeeEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccccc
Q 004835          270 DSDCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGF  346 (728)
Q Consensus       270 ~~~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~  346 (728)
                      ...++||||+.++++..+..   .+++..++.++.||+.||.|||++|||||||||+||||+ .++.+||+|||+|+...
T Consensus       102 ~~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~-~~~~vkL~DFG~a~~~~  180 (322)
T d1vzoa_         102 TKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLD-SNGHVVLTDFGLSKEFV  180 (322)
T ss_dssp             TEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTSCEEESCSSEEEECC
T ss_pred             CceeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeec-CCCCEEEeeccchhhhc
Confidence            99999999999998877653   378899999999999999999999999999999999999 56789999999997521


Q ss_pred             CCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCcccc
Q 004835          347 DGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSA  426 (728)
Q Consensus       347 ~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~  426 (728)
                      ....                                                                            
T Consensus       181 ~~~~----------------------------------------------------------------------------  184 (322)
T d1vzoa_         181 ADET----------------------------------------------------------------------------  184 (322)
T ss_dssp             GGGG----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            1000                                                                            


Q ss_pred             ccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccC
Q 004835          427 KEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGA  506 (728)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (728)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (322)
T d1vzoa_         185 --------------------------------------------------------------------------------  184 (322)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccC-CCCCchhHHHHHHHHHHH
Q 004835          507 GLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQ-HQGPKLDIWSAGVTLLYL  585 (728)
Q Consensus       507 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~-~~~~~~DIWSlG~il~eL  585 (728)
                                                             .......||+.|+|||++.+.. .++.++|||||||+||+|
T Consensus       185 ---------------------------------------~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyel  225 (322)
T d1vzoa_         185 ---------------------------------------ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYEL  225 (322)
T ss_dssp             ---------------------------------------GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------ccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHH
Confidence                                                   0011335899999999996543 468899999999999999


Q ss_pred             hcCCCCCCCCChHH-HHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHH
Q 004835          586 MIGRTPFFGDPEQN-IKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDL  664 (728)
Q Consensus       586 ltG~~PF~~~~~~~-l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dL  664 (728)
                      ++|..||.+..... ...+.+                                       ......+.++..+++++.+|
T Consensus       226 ltG~~PF~~~~~~~~~~~i~~---------------------------------------~~~~~~~~~~~~~s~~~~~l  266 (322)
T d1vzoa_         226 LTGASPFTVDGEKNSQAEISR---------------------------------------RILKSEPPYPQEMSALAKDL  266 (322)
T ss_dssp             HHSSCTTSCTTSCCCHHHHHH---------------------------------------HHHHCCCCCCTTSCHHHHHH
T ss_pred             HhCCCCCCCCCHHHHHHHHHH---------------------------------------hcccCCCCCcccCCHHHHHH
Confidence            99999998765422 222111                                       01112334456789999999


Q ss_pred             HHHhcccCCCCCC-----CHHHHhcCCCCccchhcchHhHhhh
Q 004835          665 VDKCLTVNPRLRI-----SAEDALKHEFFAPCHEMLRKQKLLR  702 (728)
Q Consensus       665 i~~~L~~dP~~Rp-----ta~e~L~Hp~f~~~~~~~~~~~~~~  702 (728)
                      |.+||.+||++||     ||+|+|+||||+++++.--.++.++
T Consensus       267 i~~~l~~dP~~R~s~~~~t~~eil~Hpff~~i~~~~l~~~~~~  309 (322)
T d1vzoa_         267 IQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVP  309 (322)
T ss_dssp             HHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHHHTTCSC
T ss_pred             HHHHcccCHHHcCCCCcccHHHHHcCHhhcCCCHHHHHhCCCC
Confidence            9999999999999     5999999999999886433333333

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-47  Score=408.68  Aligned_cols=146  Identities=21%  Similarity=0.262  Sum_probs=126.8

Q ss_pred             CCCCCCeeEEEEecccCceEEEEEEEcCCC-----eEEEEEeccCc---CchhHHHHHHHHHHhc-CCCCceEEecceEE
Q 004835          197 LPNFESFIVEEEEGSGGYGTVYRARRKNDG-----TVVAIKCPHAN---ASKHYVSNELRMLERF-GGKNFIIKYEGCFK  267 (728)
Q Consensus       197 ~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g-----~~VAIK~i~~~---~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~  267 (728)
                      ....++|+++++||+|+||+||+|++..++     ..||+|++...   .....+.+|+.++.++ +||| |+++++++.
T Consensus        33 ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~Hpn-Iv~l~~~~~  111 (325)
T d1rjba_          33 EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHEN-IVNLLGACT  111 (325)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTT-BCCEEEEEC
T ss_pred             cCCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCc-EeEEEEEEe
Confidence            344578999999999999999999987554     37999988643   3345688999999998 7888 999999999


Q ss_pred             eCCeeEEEEeccCCCChHHHhh--------------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCC
Q 004835          268 CGDSDCFVLEHVKHDRPEVLKK--------------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVK  321 (728)
Q Consensus       268 ~~~~~~LV~E~~~~~~l~~l~~--------------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIK  321 (728)
                      ..+..|+||||+++|++..+++                          .+++..++.|+.||+.||+|||+++|||||||
T Consensus       112 ~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlK  191 (325)
T d1rjba_         112 LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLA  191 (325)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCS
T ss_pred             eCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCc
Confidence            9999999999999999877652                          27888999999999999999999999999999


Q ss_pred             CCceEeecCCCceEEEeeecccc
Q 004835          322 PGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       322 PeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+|||++ .++.+||+|||+|+.
T Consensus       192 p~Nill~-~~~~~Kl~DFGla~~  213 (325)
T d1rjba_         192 ARNVLVT-HGKVVKICDFGLARD  213 (325)
T ss_dssp             GGGEEEE-TTTEEEECCCGGGSC
T ss_pred             hhccccc-cCCeEEEeecccccc
Confidence            9999999 677899999999975

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-47  Score=409.96  Aligned_cols=280  Identities=27%  Similarity=0.408  Sum_probs=212.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeC-----Ce
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCG-----DS  271 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~-----~~  271 (728)
                      ++|+++++||+|+||+||+|++..+|+.||||++....    ...++.+|+.+|++++|+| |+++++++...     ..
T Consensus        18 ~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~-iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          18 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHEN-VIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             TTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTT-BCCCSEEECSCSSTTTCC
T ss_pred             CCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCC-eeeEEEEEeeccccccCc
Confidence            58999999999999999999999999999999987542    2346789999999999999 99999998643     23


Q ss_pred             eEEEEeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeeccccccCCC
Q 004835          272 DCFVLEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMVGFDGS  349 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~~~~~~  349 (728)
                      .++||+|+.+++|..+..  .+++..++.++.||+.||+|||++||+||||||+|||++ .++.+|++|||+|.....  
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~-~~~~~kl~dfg~a~~~~~--  173 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVN-EDCELKILDFGLARHTDD--  173 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEC-TTCCEEECCC----CCTG--
T ss_pred             eEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCcccccc-ccccccccccchhcccCc--
Confidence            456666777777777653  499999999999999999999999999999999999999 667899999999863100  


Q ss_pred             CccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCcccccccCCCCCCCccccccc
Q 004835          350 FNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINSQGADGSGITSAKEA  429 (728)
Q Consensus       350 ~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~~~~~~~~~~~~~~~  429 (728)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (348)
T d2gfsa1         174 --------------------------------------------------------------------------------  173 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCCCCCCCcccccCCCC
Q 004835          430 TSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMPLHSNGIAVAGAGLM  509 (728)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (728)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (348)
T d2gfsa1         174 --------------------------------------------------------------------------------  173 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhHHHHHHHHHHHhcCC
Q 004835          510 NKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDIWSAGVTLLYLMIGR  589 (728)
Q Consensus       510 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DIWSlG~il~eLltG~  589 (728)
                                                           ......||+.|+|||++.+...++.++|||||||++|+|++|+
T Consensus       174 -------------------------------------~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~  216 (348)
T d2gfsa1         174 -------------------------------------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR  216 (348)
T ss_dssp             -------------------------------------GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------------------------ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCC
Confidence                                                 0013458899999999888877899999999999999999999


Q ss_pred             CCCCCCCh-HHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhccCCcccccCchhHHHHHHHh
Q 004835          590 TPFFGDPE-QNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLITKRPDFLEVIPSSLFDLVDKC  668 (728)
Q Consensus       590 ~PF~~~~~-~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dLi~~~  668 (728)
                      +||.+.+. .....+....|.+..........     ..........+......|..       ....++++++|||.+|
T Consensus       217 ~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~~~dli~~m  284 (348)
T d2gfsa1         217 TLFPGTDHIDQLKLILRLVGTPGAELLKKISS-----ESARNYIQSLTQMPKMNFAN-------VFIGANPLAVDLLEKM  284 (348)
T ss_dssp             CSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCC-----HHHHHHHTTSCCCCCCCHHH-------HSTTCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhcCCCChHHhhhccc-----hhhhhhhhhcccCCCcchhh-------hcCCCCHHHHHHHHHH
Confidence            99998876 45666677666543322111000     00000000111111111111       1245789999999999


Q ss_pred             cccCCCCCCCHHHHhcCCCCccchh
Q 004835          669 LTVNPRLRISAEDALKHEFFAPCHE  693 (728)
Q Consensus       669 L~~dP~~Rpta~e~L~Hp~f~~~~~  693 (728)
                      |.+||.+||||+|+|+||||++++.
T Consensus       285 L~~dP~~R~ta~elL~Hp~f~~~~~  309 (348)
T d2gfsa1         285 LVLDSDKRITAAQALAHAYFAQYHD  309 (348)
T ss_dssp             SCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             CcCChhhCcCHHHHhcCHhhCCCCC
Confidence            9999999999999999999998764

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-47  Score=402.53  Aligned_cols=143  Identities=22%  Similarity=0.278  Sum_probs=124.0

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc----CchhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      +....++|++.+.||+|+||+||+|++.   ..||||+++..    ...+.+.+|+.++.+++|+| |+++++++. .+.
T Consensus         3 wei~~~~~~~~~~lG~G~fg~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~Hpn-Iv~~~~~~~-~~~   77 (276)
T d1uwha_           3 WEIPDGQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN-ILLFMGYST-APQ   77 (276)
T ss_dssp             CBCCTTCCCCCSEEEECSSCEEEEEESS---SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTT-BCCEEEEEC-SSS
T ss_pred             cccccccEEEEEEEeeCCCcEEEEEEEC---CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCC-EeeeeEEEe-ccE
Confidence            3445678999999999999999999863   35999998743    23456889999999999999 999998765 567


Q ss_pred             eEEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +|+||||+++++|..+..    .+++..+..|+.||+.||+|||++|||||||||+||||+ .++.+||+|||+|+.
T Consensus        78 ~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~-~~~~~Kl~DFGla~~  153 (276)
T d1uwha_          78 LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLH-EDLTVKIGDFGLATV  153 (276)
T ss_dssp             CEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEE-TTSSEEECCCCCSCC
T ss_pred             EEEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEc-CCCCEEEccccceee
Confidence            899999999988877652    389999999999999999999999999999999999999 677899999999975

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-47  Score=401.03  Aligned_cols=143  Identities=18%  Similarity=0.267  Sum_probs=124.1

Q ss_pred             CCCCeeEEEE-ecccCceEEEEEEEcC--CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          199 NFESFIVEEE-EGSGGYGTVYRARRKN--DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       199 ~~~~y~i~~~-LG~G~fG~Vy~a~~~~--~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .-++|.+.+. ||+|+||+||+|.++.  ++..||||+++....   .+.+.+|+.+|++++||| |+++++++.. +.+
T Consensus         6 ~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~l~g~~~~-~~~   83 (285)
T d1u59a_           6 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPY-IVRLIGVCQA-EAL   83 (285)
T ss_dssp             CGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTT-BCCEEEEEES-SSE
T ss_pred             cccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCC-EeeEeeeecc-CeE
Confidence            3467888885 9999999999998754  456899999875432   356889999999999999 9999999864 568


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||+++++|..+..    .+++..+..|+.||+.||+|||++|||||||||+||||+ .++.+||+|||+|+.
T Consensus        84 ~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~-~~~~~Kl~DFGla~~  158 (285)
T d1u59a_          84 MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLV-NRHYAKISDFGLSKA  158 (285)
T ss_dssp             EEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEE-ETTEEEECCCTTCEE
T ss_pred             EEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhheeec-cCCceeeccchhhhc
Confidence            99999999999877642    389999999999999999999999999999999999999 667899999999985

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-47  Score=400.10  Aligned_cols=135  Identities=21%  Similarity=0.247  Sum_probs=117.3

Q ss_pred             EEecccCceEEEEEEEcC--CCeEEEEEeccCcC----chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          207 EEEGSGGYGTVYRARRKN--DGTVVAIKCPHANA----SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       207 ~~LG~G~fG~Vy~a~~~~--~g~~VAIK~i~~~~----~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      ++||+|+||+||+|.+..  +++.||||+++...    ..+.+.+|+.+|++++||| |+++++++.. +..||||||++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~Hpn-Iv~~~g~~~~-~~~~lvmE~~~   90 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPY-IVRMIGICEA-ESWMLVMEMAE   90 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTT-BCCEEEEEES-SSEEEEEECCT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCC-CceEEEEecc-CCEEEEEEcCC
Confidence            469999999999998753  45789999986432    2356889999999999999 9999999864 56799999999


Q ss_pred             CCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          281 HDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++++..+.+   .+++..+..|+.||+.||+|||+++||||||||+||||+ .++.+||+|||+|+.
T Consensus        91 ~g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~-~~~~~kl~DFGla~~  156 (277)
T d1xbba_          91 LGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLV-TQHYAKISDFGLSKA  156 (277)
T ss_dssp             TEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEE-ETTEEEECCCTTCEE
T ss_pred             CCcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhccc-ccCcccccchhhhhh
Confidence            999877654   389999999999999999999999999999999999999 667899999999975

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.3e-47  Score=396.77  Aligned_cols=142  Identities=23%  Similarity=0.200  Sum_probs=126.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc-----hhHHHHHHHHHHhcCCCCceEEecceEEeCC----e
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS-----KHYVSNELRMLERFGGKNFIIKYEGCFKCGD----S  271 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~-----~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~----~  271 (728)
                      ++|++.+.||+|+||+||+|++..+|+.||||+++....     ...+.+|+.+++.++||| |+++++++...+    .
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpn-iv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPA-IVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEEEEECSSSEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCC-CCcccceeeeccCCCce
Confidence            579999999999999999999999999999999875422     345789999999999999 999999987644    4


Q ss_pred             eEEEEeccCCCChHHHhh---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          272 DCFVLEHVKHDRPEVLKK---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +|+||||+.++.+..+..   .+++.+++.|+.||+.||+|||++|||||||||+||||+ .++..+|+|||++..
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~-~~~~~~l~d~~~~~~  160 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMIS-ATNAVKVMDFGIARA  160 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEE-TTSCEEECCCTTCEE
T ss_pred             EEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccC-ccccceeehhhhhhh
Confidence            899999999998876543   489999999999999999999999999999999999999 667799999999864

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-47  Score=392.48  Aligned_cols=142  Identities=18%  Similarity=0.181  Sum_probs=128.8

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc-CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN-ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~-~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      .++|++.++||+|+||+||+|+++ +++.||||+++.. ...+.+.+|+.++.+++|+| |+++++++.+.+.+++||||
T Consensus         3 ~~~~~~~~~iG~G~fg~Vy~~~~~-~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~Hpn-Iv~~~g~~~~~~~~~iv~Ey   80 (258)
T d1k2pa_           3 PKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEK-LVQLYGVCTKQRPIFIITEY   80 (258)
T ss_dssp             CCCCCCCCCCCEETTEEEEEEEET-TTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTT-BCCEEEEECCSSSEEEEEEC
T ss_pred             hHHCEEeEEEecCCCeEEEEEEEC-CCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCc-eeeEEEEEeeCCceEEEEEc
Confidence            368999999999999999999985 7889999998754 35677899999999999999 99999999999999999999


Q ss_pred             cCCCChHHHh----hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          279 VKHDRPEVLK----KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       279 ~~~~~l~~l~----~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +.+|++..+.    ..+++..+..++.||+.||+|||++||+||||||+||||+ .++.+||+|||+|+.
T Consensus        81 ~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~-~~~~~kl~DfG~a~~  149 (258)
T d1k2pa_          81 MANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVN-DQGVVKVSDFGLSRY  149 (258)
T ss_dssp             CTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEEC-TTCCEEECCCSSCCB
T ss_pred             cCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEc-CCCcEEECcchhhee
Confidence            9998877663    2388999999999999999999999999999999999999 667899999999975

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-46  Score=395.51  Aligned_cols=146  Identities=21%  Similarity=0.253  Sum_probs=127.4

Q ss_pred             ccCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          195 KVLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       195 ~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ++....++|++.+.||+|+||+||+|++.. ++.||||++.... ..+.+.+|+.++++++|+| |+++++++. .+..|
T Consensus        11 ~~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~-~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~n-Iv~~~g~~~-~~~~~   87 (285)
T d1fmka3          11 AWEIPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK-LVQLYAVVS-EEPIY   87 (285)
T ss_dssp             CSBCCGGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTT-BCCEEEEEC-SSSCE
T ss_pred             ceEcCHHHEEEeeEEeeCCCeEEEEEEECC-CCEEEEEEECcccCCHHHHHHHHHHHHhcccCC-EeEEEEEEe-cCCeE
Confidence            334456899999999999999999999964 4679999987543 4567899999999999999 999999985 45689


Q ss_pred             EEEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +||||+.+|++..+..     .+++.+++.|+.||+.||+|||++||+||||||+||||+ +++.+||+|||+|+.
T Consensus        88 lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~-~~~~~kl~DfGla~~  162 (285)
T d1fmka3          88 IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVG-ENLVCKVADFGLARL  162 (285)
T ss_dssp             EEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC-GGGCEEECCCCTTC-
T ss_pred             EEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEEC-CCCcEEEcccchhhh
Confidence            9999999998776542     389999999999999999999999999999999999999 667899999999975

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-46  Score=392.02  Aligned_cols=143  Identities=26%  Similarity=0.308  Sum_probs=119.6

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCC---CeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKND---GTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~---g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .-++|++.+.||+|+||+||+|++..+   +..||||.++....   ...+.+|+.++++++||| |+++++++. .+..
T Consensus         5 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~Hpn-Iv~l~~~~~-~~~~   82 (273)
T d1mp8a_           5 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPH-IVKLIGVIT-ENPV   82 (273)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTT-BCCEEEEEC-SSSC
T ss_pred             CHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEe-cCeE
Confidence            346899999999999999999998654   35799998864332   356889999999999999 999999986 5678


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |+||||+.++.+..+..    .+++..++.++.||+.||.|||+++||||||||+|||++ ..+.+||+|||+|+.
T Consensus        83 ~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~-~~~~~Kl~DfG~a~~  157 (273)
T d1mp8a_          83 WIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVS-SNDCVKLGDFGLSRY  157 (273)
T ss_dssp             EEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEE-ETTEEEECC------
T ss_pred             EEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeec-CCCcEEEccchhhee
Confidence            99999999998876532    388999999999999999999999999999999999999 667899999999975

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-45  Score=388.16  Aligned_cols=143  Identities=23%  Similarity=0.291  Sum_probs=123.9

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCC----eEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDG----TVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g----~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~  272 (728)
                      .+.|++.++||+|+||+||+|.++.++    ..||||++.....   ...+.+|+.++.+++|+| |+++++++...+..
T Consensus         6 ~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~n-Iv~~~g~~~~~~~~   84 (283)
T d1mqba_           6 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHN-IIRLEGVISKYKPM   84 (283)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEECSSSSE
T ss_pred             HHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCC-EeeeeEEEecCCce
Confidence            357999999999999999999987654    4799999875432   345789999999999999 99999999999999


Q ss_pred             EEEEeccCCCChHHHhh----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          273 CFVLEHVKHDRPEVLKK----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       273 ~LV~E~~~~~~l~~l~~----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ++||||+.++++..+..    .+++..+..++.||+.||.|||+++||||||||+||||+ .++.+||+|||+|+.
T Consensus        85 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~-~~~~~Kl~DFGla~~  159 (283)
T d1mqba_          85 MIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVN-SNLVCKVSDFGLSRV  159 (283)
T ss_dssp             EEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-TTCCEEECCCCC---
T ss_pred             EEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccccccCccccceEEEC-CCCeEEEcccchhhc
Confidence            99999999998776542    389999999999999999999999999999999999999 677899999999975

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-45  Score=384.42  Aligned_cols=145  Identities=20%  Similarity=0.252  Sum_probs=125.9

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEe-CCeeEE
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKC-GDSDCF  274 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~-~~~~~L  274 (728)
                      +....++|++++.||+|+||.||+|++  .|+.||||+++.....+.+.+|+.++++++|+| |+++++++.. .+.+|+
T Consensus         2 w~i~~~~~~~~~~lG~G~fg~Vy~~~~--~~~~vAvK~i~~~~~~~~~~~E~~~l~~l~Hpn-Iv~~~g~~~~~~~~~~l   78 (262)
T d1byga_           2 WALNMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSN-LVQLLGVIVEEKGGLYI   78 (262)
T ss_dssp             CBCCGGGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCCC--HHHHHTHHHHTTCCCTT-BCCEEEEECCC--CCEE
T ss_pred             CccCHHHeEEeEEEecCCCeEEEEEEE--CCeEEEEEEECcHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEEecCCcEEE
Confidence            345677999999999999999999998  488999999988877888999999999999999 9999998854 467899


Q ss_pred             EEeccCCCChHHHhh-----cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          275 VLEHVKHDRPEVLKK-----EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       275 V~E~~~~~~l~~l~~-----~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||||++++++..+..     .+++..++.|+.||+.||.|||+++|+||||||+|||++ .++.+||+|||+++.
T Consensus        79 v~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~-~~~~~kl~dfg~s~~  152 (262)
T d1byga_          79 VTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVS-EDNVAKVSDFGLTKE  152 (262)
T ss_dssp             EECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC-TTSCEEECCCCC---
T ss_pred             EEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheec-CCCCEeeccccccee
Confidence            999999998877642     289999999999999999999999999999999999999 667899999999874

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=389.07  Aligned_cols=146  Identities=21%  Similarity=0.296  Sum_probs=116.1

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcC-----CCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEe-
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKC-  268 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~-----~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~-  268 (728)
                      ...++|++.+.||+|+||.||+|++..     +++.||||+++....   ...+.+|..++.++.|+++|+.+++++.. 
T Consensus        10 i~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~   89 (299)
T d1ywna1          10 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKP   89 (299)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST
T ss_pred             ccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccC
Confidence            344789999999999999999999754     457899999875432   34577888888888766668888887665 


Q ss_pred             CCeeEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec
Q 004835          269 GDSDCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC  329 (728)
Q Consensus       269 ~~~~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~  329 (728)
                      +...++||||++++++..+.+                   .+++..++.++.||+.||.|||++|||||||||+||||+ 
T Consensus        90 ~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~-  168 (299)
T d1ywna1          90 GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLS-  168 (299)
T ss_dssp             TSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEC-
T ss_pred             CCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeEC-
Confidence            456899999999999877652                   278899999999999999999999999999999999999 


Q ss_pred             CCCceEEEeeecccc
Q 004835          330 KAVKGYLIDFNLAMV  344 (728)
Q Consensus       330 ~~~~~kL~DFGlA~~  344 (728)
                      +++.+||+|||+|+.
T Consensus       169 ~~~~~Kl~DFGla~~  183 (299)
T d1ywna1         169 EKNVVKICDFGLARD  183 (299)
T ss_dssp             GGGCEEECC------
T ss_pred             CCCcEEEccCcchhh
Confidence            667899999999975

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-45  Score=391.61  Aligned_cols=141  Identities=20%  Similarity=0.256  Sum_probs=119.5

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCe----EEEEEeccCc---CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGT----VVAIKCPHAN---ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDC  273 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~----~VAIK~i~~~---~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~  273 (728)
                      ++|+++++||+|+||+||+|++..+|+    .||+|.+...   ...+.+.+|+.++++++||| |+++++++.++ ..+
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~Hpn-Iv~l~g~~~~~-~~~   86 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH-VCRLLGICLTS-TVQ   86 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTT-BCCEEEEEESS-SEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCC-EeeEEEEEecC-Cee
Confidence            579999999999999999999988776    5888887643   34567899999999999999 99999999865 567


Q ss_pred             EEEeccCCCChHHHh-h---cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          274 FVLEHVKHDRPEVLK-K---EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       274 LV~E~~~~~~l~~l~-~---~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      +++||+.++.+.... .   .+++..++.|+.||+.||+|||++|||||||||+||||+ .++.+||+|||+|+.
T Consensus        87 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~-~~~~~kl~DFGla~~  160 (317)
T d1xkka_          87 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVK-TPQHVKITDFGLAKL  160 (317)
T ss_dssp             EEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEE-ETTEEEECCCSHHHH
T ss_pred             EEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeC-CCCCeEeecccccee
Confidence            778888877665443 2   388999999999999999999999999999999999999 667899999999985

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.7e-45  Score=385.65  Aligned_cols=145  Identities=25%  Similarity=0.393  Sum_probs=129.6

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      ++|++++.||+|+||+||+|++..+|+.||||++........+.+|+++++.+.|+++|+.+.+++..++..++||||++
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~   86 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG   86 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC
Confidence            47999999999999999999999999999999988766666788999999999999988888888899999999999998


Q ss_pred             CCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec--CCCceEEEeeeccccc
Q 004835          281 HDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC--KAVKGYLIDFNLAMVG  345 (728)
Q Consensus       281 ~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~--~~~~~kL~DFGlA~~~  345 (728)
                      +++...+.   +.+++..+..++.|++.||+|||++|||||||||+|||++.  .+..++|+|||+|+..
T Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~  156 (299)
T d1ckia_          87 PSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKY  156 (299)
T ss_dssp             CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEEC
T ss_pred             CchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceec
Confidence            87666554   34999999999999999999999999999999999999863  3457999999999863

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.5e-45  Score=385.63  Aligned_cols=143  Identities=22%  Similarity=0.335  Sum_probs=127.7

Q ss_pred             CCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcCc---hhHHHHHHHHHHhcCCCCceEEecceEEeCCe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANAS---KHYVSNELRMLERFGGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~  271 (728)
                      .++|++++.||+|+||+||+|+++     .+++.||||++.....   ..++.+|+.+|++++|+| |+++++++...+.
T Consensus        12 ~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~n-iv~~~~~~~~~~~   90 (301)
T d1lufa_          12 RNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPN-IVKLLGVCAVGKP   90 (301)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTT-BCCEEEEECSSSS
T ss_pred             HHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCC-cccceeeeccCCc
Confidence            468999999999999999999985     3568999999875432   356889999999999999 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh---------------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCc
Q 004835          272 DCFVLEHVKHDRPEVLKK---------------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGN  324 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~---------------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeN  324 (728)
                      .++||||+.++++..+..                           .+++..+..|+.||+.||+|||+++||||||||+|
T Consensus        91 ~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~N  170 (301)
T d1lufa_          91 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRN  170 (301)
T ss_dssp             CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             eEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEcccc
Confidence            999999999998877653                           26788999999999999999999999999999999


Q ss_pred             eEeecCCCceEEEeeecccc
Q 004835          325 FLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       325 ILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+ .++.+||+|||+|+.
T Consensus       171 ILld-~~~~~Kl~DFGls~~  189 (301)
T d1lufa_         171 CLVG-ENMVVKIADFGLSRN  189 (301)
T ss_dssp             EEEC-GGGCEEECCCSCHHH
T ss_pred             eEEC-CCCcEEEccchhhee
Confidence            9999 667899999999975

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-45  Score=387.08  Aligned_cols=145  Identities=23%  Similarity=0.323  Sum_probs=127.0

Q ss_pred             CCCCCeeEEEEecccCceEEEEEEEcCCCe--EEEEEeccCc---CchhHHHHHHHHHHhc-CCCCceEEecceEEeCCe
Q 004835          198 PNFESFIVEEEEGSGGYGTVYRARRKNDGT--VVAIKCPHAN---ASKHYVSNELRMLERF-GGKNFIIKYEGCFKCGDS  271 (728)
Q Consensus       198 ~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g~--~VAIK~i~~~---~~~~~~~~Ei~iL~~L-~h~n~Ivkl~~~~~~~~~  271 (728)
                      .++++|++.++||+|+||+||+|+++.+|.  .||||.+...   ...+.+.+|+.+|.++ +|+| |+++++++..++.
T Consensus         7 i~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~Hpn-Iv~~~~~~~~~~~   85 (309)
T d1fvra_           7 LDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPN-IINLLGACEHRGY   85 (309)
T ss_dssp             CCGGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTT-BCCEEEEEEETTE
T ss_pred             cCHHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCC-EeeEEEEEecCCe
Confidence            356899999999999999999999988876  4777876532   2345688999999999 6888 9999999999999


Q ss_pred             eEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC
Q 004835          272 DCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV  332 (728)
Q Consensus       272 ~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~  332 (728)
                      .|+||||+++|.+..++.                   .+++..+..++.||+.||.|||+++||||||||+|||++ .++
T Consensus        86 ~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~-~~~  164 (309)
T d1fvra_          86 LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVG-ENY  164 (309)
T ss_dssp             EEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-GGG
T ss_pred             eEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEc-CCC
Confidence            999999999999877652                   378999999999999999999999999999999999999 667


Q ss_pred             ceEEEeeecccc
Q 004835          333 KGYLIDFNLAMV  344 (728)
Q Consensus       333 ~~kL~DFGlA~~  344 (728)
                      .+||+|||+|+.
T Consensus       165 ~~kl~DfG~a~~  176 (309)
T d1fvra_         165 VAKIADFGLSRG  176 (309)
T ss_dssp             CEEECCTTCEES
T ss_pred             ceEEcccccccc
Confidence            899999999974

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-44  Score=378.61  Aligned_cols=147  Identities=21%  Similarity=0.254  Sum_probs=122.7

Q ss_pred             cCCCCCCeeEEEEecccCceEEEEEEEcCCC-------eEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecc
Q 004835          196 VLPNFESFIVEEEEGSGGYGTVYRARRKNDG-------TVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEG  264 (728)
Q Consensus       196 ~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~~g-------~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~  264 (728)
                      +....++|++++.||+|+||.||+|++..++       ..||||+++....   ...+.+|...+.++ +|+| |+++++
T Consensus         8 ~~i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~Hpn-Iv~~~~   86 (299)
T d1fgka_           8 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN-IINLLG   86 (299)
T ss_dssp             TBCCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTT-BCCEEE
T ss_pred             CcccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCe-EEeccc
Confidence            3344579999999999999999999976544       4799999976543   34577899999888 6887 999999


Q ss_pred             eEEeCCeeEEEEeccCCCChHHHhh-------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCce
Q 004835          265 CFKCGDSDCFVLEHVKHDRPEVLKK-------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNF  325 (728)
Q Consensus       265 ~~~~~~~~~LV~E~~~~~~l~~l~~-------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNI  325 (728)
                      ++.+++..|+||||+.+|.+..++.                   .+++..++.++.||+.||+|||+++||||||||+||
T Consensus        87 ~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~Ni  166 (299)
T d1fgka_          87 ACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNV  166 (299)
T ss_dssp             EECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             ccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccce
Confidence            9999999999999999999877652                   378999999999999999999999999999999999


Q ss_pred             EeecCCCceEEEeeecccc
Q 004835          326 LFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       326 Lld~~~~~~kL~DFGlA~~  344 (728)
                      |++ .++.+||+|||+++.
T Consensus       167 Ll~-~~~~~kl~dfg~~~~  184 (299)
T d1fgka_         167 LVT-EDNVMKIADFGLARD  184 (299)
T ss_dssp             EEC-TTCCEEECSTTCCCC
T ss_pred             eec-CCCCeEeccchhhcc
Confidence            999 667899999999975

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-44  Score=377.41  Aligned_cols=143  Identities=20%  Similarity=0.271  Sum_probs=117.0

Q ss_pred             CCCCeeEEEEecccCceEEEEEEEcCC-C--eEEEEEeccCc-----CchhHHHHHHHHHHhcCCCCceEEecceEEeCC
Q 004835          199 NFESFIVEEEEGSGGYGTVYRARRKND-G--TVVAIKCPHAN-----ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGD  270 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~-g--~~VAIK~i~~~-----~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~  270 (728)
                      +.++|++.+.||+|+||.||+|++..+ +  ..||||++...     ...+.+.+|+.+|++++|+| |+++++++.+ .
T Consensus         6 ~~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~n-Iv~~~g~~~~-~   83 (273)
T d1u46a_           6 GEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN-LIRLYGVVLT-P   83 (273)
T ss_dssp             CGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTT-BCCEEEEECS-S
T ss_pred             chHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCC-EEEEEEEEee-c
Confidence            346899999999999999999987533 3  47899998643     12356889999999999999 9999999975 5


Q ss_pred             eeEEEEeccCCCChHHHh----hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          271 SDCFVLEHVKHDRPEVLK----KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       271 ~~~LV~E~~~~~~l~~l~----~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ..++||||+.++.+....    ..+++..++.++.||+.||.|||++||+||||||+||||+ .++.+||+|||+++.
T Consensus        84 ~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~-~~~~vkl~DfGl~~~  160 (273)
T d1u46a_          84 PMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLA-TRDLVKIGDFGLMRA  160 (273)
T ss_dssp             SCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEE-ETTEEEECCCTTCEE
T ss_pred             chheeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccc-cccceeeccchhhhh
Confidence            779999999988876543    2499999999999999999999999999999999999999 567899999999985

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-44  Score=381.78  Aligned_cols=149  Identities=21%  Similarity=0.279  Sum_probs=130.7

Q ss_pred             cccCCCCCCeeEEEEecccCceEEEEEEEcC-----CCeEEEEEeccCcCch---hHHHHHHHHHHhcCCCCceEEecce
Q 004835          194 AKVLPNFESFIVEEEEGSGGYGTVYRARRKN-----DGTVVAIKCPHANASK---HYVSNELRMLERFGGKNFIIKYEGC  265 (728)
Q Consensus       194 ~~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~~-----~g~~VAIK~i~~~~~~---~~~~~Ei~iL~~L~h~n~Ivkl~~~  265 (728)
                      +++....++|++.+.||+|+||+||+|.+..     +++.||||+++.....   ..+.+|+.++++++|+| |++++++
T Consensus        13 ~~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~n-Iv~~~~~   91 (308)
T d1p4oa_          13 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHH-VVRLLGV   91 (308)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTT-BCCEEEE
T ss_pred             cceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCC-EeeeeeE
Confidence            4456667899999999999999999998852     3578999999754332   35789999999999999 9999999


Q ss_pred             EEeCCeeEEEEeccCCCChHHHhh-------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCC
Q 004835          266 FKCGDSDCFVLEHVKHDRPEVLKK-------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAV  332 (728)
Q Consensus       266 ~~~~~~~~LV~E~~~~~~l~~l~~-------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~  332 (728)
                      +...+..++||||+.+|++..+..             .+++..+..++.|++.||.|||+++|+||||||+||||+ .++
T Consensus        92 ~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld-~~~  170 (308)
T d1p4oa_          92 VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVA-EDF  170 (308)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEEC-TTC
T ss_pred             EecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeec-CCc
Confidence            999999999999999998877642             157888999999999999999999999999999999999 777


Q ss_pred             ceEEEeeecccc
Q 004835          333 KGYLIDFNLAMV  344 (728)
Q Consensus       333 ~~kL~DFGlA~~  344 (728)
                      .+||+|||+|+.
T Consensus       171 ~~Kl~DFGla~~  182 (308)
T d1p4oa_         171 TVKIGDFGMTRD  182 (308)
T ss_dssp             CEEECCTTCCCG
T ss_pred             eEEEeeccccee
Confidence            899999999975

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7e-44  Score=384.19  Aligned_cols=293  Identities=22%  Similarity=0.312  Sum_probs=217.2

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCC----------ceEEecceEEe-
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKN----------FIIKYEGCFKC-  268 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n----------~Ivkl~~~~~~-  268 (728)
                      ++|+++++||+|+||+||+|++..+|+.||||+++... ..+.+.+|+.+++.+.|++          +|+++++++.. 
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~   92 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK   92 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred             CcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeec
Confidence            35999999999999999999999999999999997653 3456778999998887532          38888888754 


Q ss_pred             -CCeeEEEEeccCCCChHH--Hh----hcCChHHHHHHHHHHHHHHHHHHh-CCcEeccCCCCceEeecCCC-----ceE
Q 004835          269 -GDSDCFVLEHVKHDRPEV--LK----KEIDLSQLQWYGYCLFRALASLHK-QGIVHRDVKPGNFLFSCKAV-----KGY  335 (728)
Q Consensus       269 -~~~~~LV~E~~~~~~l~~--l~----~~l~~~~~~~i~~QIl~aL~yLHs-~gIIHRDIKPeNILld~~~~-----~~k  335 (728)
                       ....+++|+++.......  ..    ..+++..++.++.||+.||.|||+ +||+||||||+||||+.++.     .++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~k  172 (362)
T d1q8ya_          93 GPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIK  172 (362)
T ss_dssp             ETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEE
T ss_pred             cccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceee
Confidence             356677777766543221  11    238889999999999999999998 89999999999999984432     478


Q ss_pred             EEeeeccccccCCCCccccCCCCcCCCCCCCCCCCCcccccccccccccCCCCCccccchhhhhccccccCCCccccccc
Q 004835          336 LIDFNLAMVGFDGSFNQATLPGTKYVPPVNGRKVPSAKSLVAVKQDTRKGSNLEPKDLKRKVVRQTNVHNDLGSRNIINS  415 (728)
Q Consensus       336 L~DFGlA~~~~~~~~~~~~~~~t~yipPe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfg~~~~~~~  415 (728)
                      |+|||.|.....                                                                    
T Consensus       173 l~dfg~s~~~~~--------------------------------------------------------------------  184 (362)
T d1q8ya_         173 IADLGNACWYDE--------------------------------------------------------------------  184 (362)
T ss_dssp             ECCCTTCEETTB--------------------------------------------------------------------
T ss_pred             Eeeccccccccc--------------------------------------------------------------------
Confidence            899988763100                                                                    


Q ss_pred             CCCCCCCccccccccccCCcccccCCCCCccchhHHHHHHHhhhcCCCCCCCCCCCCccccccCCCCCCCccccccCCCC
Q 004835          416 QGADGSGITSAKEATSTRTPAERLREPLPCQGRKELISLLQKALRNPNYEASDCPAPRRKRVVAPPGKVGKELVYITPMP  495 (728)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~  495 (728)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (362)
T d1q8ya_         185 --------------------------------------------------------------------------------  184 (362)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcccccCCCCCCCCCCchhHHHHHhhcCCCCchhhhhhhhccCCCCCCCCCCcCCCCcccchhhhccCCCCCchhH
Q 004835          496 LHSNGIAVAGAGLMNKGPSDLSDLQILLLTKLHPVPVLIIFYLLLGNGKQKKDGPCAGTKGFRAPEVLFRSQHQGPKLDI  575 (728)
Q Consensus       496 ~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~~DI  575 (728)
                                                                         .....+||+.|+|||++.+.. ++.++||
T Consensus       185 ---------------------------------------------------~~~~~~gt~~y~aPE~~~~~~-~~~~~Di  212 (362)
T d1q8ya_         185 ---------------------------------------------------HYTNSIQTREYRSPEVLLGAP-WGCGADI  212 (362)
T ss_dssp             ---------------------------------------------------CCCSCCSCGGGCCHHHHHTCC-CCTHHHH
T ss_pred             ---------------------------------------------------ccccccccccccChhhccccC-CCccccc
Confidence                                                               001346899999999997654 6999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCC-------hHHHHHHHHHhCCchHHHHHHhccCCCCCcchhhcccCCCCCCchhhhhhhc
Q 004835          576 WSAGVTLLYLMIGRTPFFGDP-------EQNIKDIAKLRGSEDLWEVAKLHNRESSFPEDLYAAKSLPPINLPEWCKLIT  648 (728)
Q Consensus       576 WSlG~il~eLltG~~PF~~~~-------~~~l~~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  648 (728)
                      ||+||++++|++|+.||....       ...+..++..+|............. ..+.........+.......+.....
T Consensus       213 wSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (362)
T d1q8ya_         213 WSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYT-RTFFNSRGLLRNISKLKFWPLEDVLT  291 (362)
T ss_dssp             HHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTH-HHHBCC--CBSSCCCCCBCCHHHHHH
T ss_pred             cchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhccccc-ccccccchhhhccccccCCchhhhcc
Confidence            999999999999999997543       2457777888887544333221111 11111112223344444555666666


Q ss_pred             cCCcccccCchhHHHHHHHhcccCCCCCCCHHHHhcCCCCccchhc
Q 004835          649 KRPDFLEVIPSSLFDLVDKCLTVNPRLRISAEDALKHEFFAPCHEM  694 (728)
Q Consensus       649 ~~~~~~~~~~~~l~dLi~~~L~~dP~~Rpta~e~L~Hp~f~~~~~~  694 (728)
                      ....+....++.+.|||.+||.+||.+||||+|||+||||+++...
T Consensus       292 ~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~~~  337 (362)
T d1q8ya_         292 EKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGM  337 (362)
T ss_dssp             HTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTTC
T ss_pred             cccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCCCc
Confidence            6677778889999999999999999999999999999999976533

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-43  Score=374.36  Aligned_cols=148  Identities=22%  Similarity=0.303  Sum_probs=129.1

Q ss_pred             ccCCCCCCeeEEEEecccCceEEEEEEEc-----CCCeEEEEEeccCcCc---hhHHHHHHHHHHhc-CCCCceEEecce
Q 004835          195 KVLPNFESFIVEEEEGSGGYGTVYRARRK-----NDGTVVAIKCPHANAS---KHYVSNELRMLERF-GGKNFIIKYEGC  265 (728)
Q Consensus       195 ~~~~~~~~y~i~~~LG~G~fG~Vy~a~~~-----~~g~~VAIK~i~~~~~---~~~~~~Ei~iL~~L-~h~n~Ivkl~~~  265 (728)
                      .+....++|++.++||+|+||.||+|++.     .+++.||||+++....   ...+.+|+.++.++ +|+| |++++++
T Consensus        17 ~~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~Hpn-Iv~~~g~   95 (311)
T d1t46a_          17 KWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMN-IVNLLGA   95 (311)
T ss_dssp             GGBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT-BCCEEEE
T ss_pred             cccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCC-EEEEEEE
Confidence            34445579999999999999999999873     4568999999975432   34578999999999 5777 9999999


Q ss_pred             EEeCCeeEEEEeccCCCChHHHhh---------------------cCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCc
Q 004835          266 FKCGDSDCFVLEHVKHDRPEVLKK---------------------EIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGN  324 (728)
Q Consensus       266 ~~~~~~~~LV~E~~~~~~l~~l~~---------------------~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeN  324 (728)
                      +..+...|+||||++++++..+.+                     .+++..+..|+.||+.||+|||+++||||||||+|
T Consensus        96 ~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~N  175 (311)
T d1t46a_          96 CTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARN  175 (311)
T ss_dssp             ECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             EeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccccc
Confidence            999999999999999998877643                     27889999999999999999999999999999999


Q ss_pred             eEeecCCCceEEEeeecccc
Q 004835          325 FLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       325 ILld~~~~~~kL~DFGlA~~  344 (728)
                      ||++ ..+.++|+|||+++.
T Consensus       176 Il~~-~~~~~ki~DfG~~~~  194 (311)
T d1t46a_         176 ILLT-HGRITKICDFGLARD  194 (311)
T ss_dssp             EEEE-TTTEEEECCCGGGSC
T ss_pred             cccc-ccCcccccccchhee
Confidence            9999 667899999999975

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=6.5e-43  Score=368.43  Aligned_cols=144  Identities=20%  Similarity=0.334  Sum_probs=128.4

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEeccC
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEHVK  280 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~~~  280 (728)
                      ++|++++.||+|+||+||+|++..+|+.||||++........+.+|++++..+.|+++++.+++++..+...|+||||++
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~~   84 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLG   84 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECCC
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEecC
Confidence            58999999999999999999999999999999987766666788999999999997779999999999999999999997


Q ss_pred             CCChHHHh---hcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeec----CCCceEEEeeecccc
Q 004835          281 HDRPEVLK---KEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSC----KAVKGYLIDFNLAMV  344 (728)
Q Consensus       281 ~~~l~~l~---~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~----~~~~~kL~DFGlA~~  344 (728)
                      +++...+.   ..+++..+..++.|++.||.|||++|||||||||+||||+.    ..+.+||+|||+|+.
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~  155 (293)
T d1csna_          85 PSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF  155 (293)
T ss_dssp             CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEE
T ss_pred             CCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEE
Confidence            65544443   24899999999999999999999999999999999999973    246799999999986

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-42  Score=370.44  Aligned_cols=139  Identities=21%  Similarity=0.273  Sum_probs=119.7

Q ss_pred             eEEEEecccCceEEEEEEEcCCC---eEEEEEeccCcC---chhHHHHHHHHHHhcCCCCceEEecceEEe-CCeeEEEE
Q 004835          204 IVEEEEGSGGYGTVYRARRKNDG---TVVAIKCPHANA---SKHYVSNELRMLERFGGKNFIIKYEGCFKC-GDSDCFVL  276 (728)
Q Consensus       204 ~i~~~LG~G~fG~Vy~a~~~~~g---~~VAIK~i~~~~---~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~-~~~~~LV~  276 (728)
                      .+.++||+|+||+||+|++..++   ..||||+++...   ..+.+.+|+.+|.+++|+| |+++++++.. ....++||
T Consensus        30 ~~~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~Hpn-Iv~~~g~~~~~~~~~~lv~  108 (311)
T d1r0pa_          30 HFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN-VLSLLGICLRSEGSPLVVL  108 (311)
T ss_dssp             EEEEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTT-BCCCCEEEEETTTEEEEEE
T ss_pred             ccceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCC-EeEEeEEEEecCCceEEEE
Confidence            44689999999999999987543   369999986432   2356899999999999999 9999998765 56899999


Q ss_pred             eccCCCChHHHhhc----CChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          277 EHVKHDRPEVLKKE----IDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       277 E~~~~~~l~~l~~~----l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ||+.++++..+...    +++..+..++.|++.||.|||+.+|+||||||+||||+ +++.+||+|||+++.
T Consensus       109 E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~-~~~~~kL~DFG~~~~  179 (311)
T d1r0pa_         109 PYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLD-EKFTVKVADFGLARD  179 (311)
T ss_dssp             ECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC-TTCCEEECSSGGGCC
T ss_pred             EEeecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeEC-CCCCEEEecccchhh
Confidence            99999999876542    66788999999999999999999999999999999999 777899999999975

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-43  Score=369.43  Aligned_cols=140  Identities=21%  Similarity=0.303  Sum_probs=119.1

Q ss_pred             CCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhH-HHHHHHHHHhcCCCCceEEecceEEeCC----eeEEE
Q 004835          201 ESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHY-VSNELRMLERFGGKNFIIKYEGCFKCGD----SDCFV  275 (728)
Q Consensus       201 ~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~-~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~----~~~LV  275 (728)
                      ..|.+.+.||+|+||+||+|++  +|+.||||+++....... ...|+..+..++|+| |+++++++...+    .+|+|
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~--~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~Hpn-Iv~~~~~~~~~~~~~~~~~lv   79 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREERSWFREAEIYQTVMLRHEN-ILGFIAADNKDNGTWTQLWLV   79 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE--TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTT-BCCEEEEEEEECSSSEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccchhHHHHHHHHHHHhhCCCCc-CcceEEEEEeCCCcceEEEEE
Confidence            3689999999999999999997  689999999875533222 234555556789999 999999987653    58999


Q ss_pred             EeccCCCChHHHhh--cCChHHHHHHHHHHHHHHHHHHh--------CCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          276 LEHVKHDRPEVLKK--EIDLSQLQWYGYCLFRALASLHK--------QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       276 ~E~~~~~~l~~l~~--~l~~~~~~~i~~QIl~aL~yLHs--------~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      |||+.++++..+++  .+++..+..++.|++.||+|||+        +|||||||||+||||+ +++.+||+|||+++.
T Consensus        80 ~Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~-~~~~~Kl~DFGl~~~  157 (303)
T d1vjya_          80 SDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVK-KNGTCCIADLGLAVR  157 (303)
T ss_dssp             EECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEEC-TTSCEEECCCTTCEE
T ss_pred             EecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEc-CCCCeEEEecCcccc
Confidence            99999999987765  48899999999999999999996        5999999999999999 677899999999975

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.85  E-value=1.4e-21  Score=191.47  Aligned_cols=130  Identities=18%  Similarity=0.229  Sum_probs=104.7

Q ss_pred             eeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCc--------------------hhHHHHHHHHHHhcCCCCceEEe
Q 004835          203 FIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANAS--------------------KHYVSNELRMLERFGGKNFIIKY  262 (728)
Q Consensus       203 y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~--------------------~~~~~~Ei~iL~~L~h~n~Ivkl  262 (728)
                      +.+.++||+|+||+||+|++. +|+.||||+++....                    .....+|+..+.++.|.+ ++..
T Consensus         2 ~~vg~~IG~G~~g~Vy~a~~~-~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~-v~~~   79 (191)
T d1zara2           2 DAIGKLMGEGKESAVFNCYSE-KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLA-VPKV   79 (191)
T ss_dssp             SEEEEEEEECSSEEEEEEEET-TTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSS-SCCE
T ss_pred             chhCCEeeeCcceEEEEEECC-CCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCC-cceE
Confidence            568999999999999999985 799999998753110                    122456888999999988 7666


Q ss_pred             cceEEeCCeeEEEEeccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHHhCCcEeccCCCCceEeecCCCceEEEeeecc
Q 004835          263 EGCFKCGDSDCFVLEHVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLHKQGIVHRDVKPGNFLFSCKAVKGYLIDFNLA  342 (728)
Q Consensus       263 ~~~~~~~~~~~LV~E~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLHs~gIIHRDIKPeNILld~~~~~~kL~DFGlA  342 (728)
                      +++.    ..++||||+++....    .++...+..++.|++.||.|||++||+||||||+|||++ ++ .++|+|||+|
T Consensus        80 ~~~~----~~~lvme~~~~~~~~----~l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~-~~-~~~liDFG~a  149 (191)
T d1zara2          80 YAWE----GNAVLMELIDAKELY----RVRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EE-GIWIIDFPQS  149 (191)
T ss_dssp             EEEE----TTEEEEECCCCEEGG----GCCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TT-EEEECCCTTC
T ss_pred             EEec----CCEEEEEeecccccc----chhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeee-CC-CEEEEECCCc
Confidence            5442    238999999986543    356667788999999999999999999999999999998 44 4899999999


Q ss_pred             cc
Q 004835          343 MV  344 (728)
Q Consensus       343 ~~  344 (728)
                      ..
T Consensus       150 ~~  151 (191)
T d1zara2         150 VE  151 (191)
T ss_dssp             EE
T ss_pred             cc
Confidence            75

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.26  E-value=2.1e-06  Score=85.12  Aligned_cols=140  Identities=12%  Similarity=0.061  Sum_probs=92.3

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCc--CchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEe
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHAN--ASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLE  277 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~--~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E  277 (728)
                      ++.|++.+..+-++.+.||+...  ++..++||+....  .....+.+|..++..+...--+.+++.+...++..|+||+
T Consensus        13 ~~~~~~~~~~~G~s~~~v~rv~~--~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~   90 (263)
T d1j7la_          13 IEKYRCVKDTEGMSPAKVYKLVG--ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMS   90 (263)
T ss_dssp             HTTSEEEECSCCCSSSEEEEEEC--SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEE
T ss_pred             hhceEEEEcCCCCCCCcEEEEEe--CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEE
Confidence            34677777655555678998864  5677888886543  2344577899888877543226777888888899999999


Q ss_pred             ccCCCChHHHhhcCChHHHHHHHHHHHHHHHHHH----------------------------------------------
Q 004835          278 HVKHDRPEVLKKEIDLSQLQWYGYCLFRALASLH----------------------------------------------  311 (728)
Q Consensus       278 ~~~~~~l~~l~~~l~~~~~~~i~~QIl~aL~yLH----------------------------------------------  311 (728)
                      +++|..+.....  +......++.++...|+.||                                              
T Consensus        91 ~l~G~~~~~~~~--~~~~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (263)
T d1j7la_          91 EADGVLCSEEYE--DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPR  168 (263)
T ss_dssp             CCSSEEHHHHTT--TCSCHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSHH
T ss_pred             eccccccccccc--ccccHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHHH
Confidence            999876533211  11111222333333333333                                              


Q ss_pred             -------hC------CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          312 -------KQ------GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       312 -------s~------gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                             ..      .++|+|+.|.|||++ ++...-|+||+.+..
T Consensus       169 ~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~-~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         169 ELYDFLKTEKPEEELVFSHGDLGDSNIFVK-DGKVSGFIDLGRSGR  213 (263)
T ss_dssp             HHHHHHHHSCCCCCEEEECSCCCTTSEEEE-TTEEEEECCCTTCEE
T ss_pred             HHHHHHHhcCCcCCcEEEEeeccCcceeec-CCceEEEeechhccc
Confidence                   11      279999999999998 555556999998875

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.83  E-value=2.3e-05  Score=76.96  Aligned_cols=142  Identities=14%  Similarity=0.105  Sum_probs=86.6

Q ss_pred             CCCCeeEEEEecccC-ceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCc-eEEecceEEeCCeeEEEE
Q 004835          199 NFESFIVEEEEGSGG-YGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNF-IIKYEGCFKCGDSDCFVL  276 (728)
Q Consensus       199 ~~~~y~i~~~LG~G~-fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~-Ivkl~~~~~~~~~~~LV~  276 (728)
                      .+..+.+. .+..|. -+.||+... .++..+++|...... ...+..|...++.+..... +.+++.+..+++..++||
T Consensus         9 ~l~g~~~~-~~~~G~s~~~v~r~~~-~~~~~~vlK~~~~~~-~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~   85 (255)
T d1nd4a_           9 RLFGYDWA-QQTIGCSDAAVFRLSA-QGRPVLFVKTDLSGA-LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLL   85 (255)
T ss_dssp             TTTTCEEE-ECSCTTSSCEEEEEEC-TTSCCEEEEEECSCT-TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEE
T ss_pred             hccCCceE-EcCCcccCCeEEEEEe-CCCCEEEEEeCCccC-HhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEE
Confidence            34455554 344444 468999886 356778999765443 3446788888887765442 566777777888899999


Q ss_pred             eccCCCChHH-----------H---h---hcCC---------hHHHH-----HHH---------------HHHHHHHHHH
Q 004835          277 EHVKHDRPEV-----------L---K---KEID---------LSQLQ-----WYG---------------YCLFRALASL  310 (728)
Q Consensus       277 E~~~~~~l~~-----------l---~---~~l~---------~~~~~-----~i~---------------~QIl~aL~yL  310 (728)
                      ++++|..+..           +   .   +.++         .....     .+.               ......+..+
T Consensus        86 ~~i~G~~~~~~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  165 (255)
T d1nd4a_          86 GEVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARL  165 (255)
T ss_dssp             ECCSSEETTTSCCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHH
T ss_pred             EeeeccccccccccHHHHHHHHHHHHHHHccCChhhCCCcccchhhHHHHHHHHHHhhhccccccchhhhhHHHHHHHHH
Confidence            9998743311           0   0   0010         00000     000               0012233344


Q ss_pred             HhC-------CcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          311 HKQ-------GIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       311 Hs~-------gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      ...       .++|+|+.|.|||++ ++..+-|+||+.+..
T Consensus       166 ~~~~~~~~~~~liHgD~~~~Nvl~~-~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         166 KARMPDGEDLVVTHGDACLPNIMVE-NGRFSGFIDCGRLGV  205 (255)
T ss_dssp             HHTCCSSCCEEEECSSCCGGGEEEE-TTEEEEECCCTTCEE
T ss_pred             HHhCCccCCceEEeCCCCCcceEEe-CCceEEEEEchhccc
Confidence            332       379999999999998 555567999999875

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=97.49  E-value=0.00014  Score=77.10  Aligned_cols=75  Identities=17%  Similarity=0.161  Sum_probs=49.1

Q ss_pred             EEEecccCceEEEEEEEcCCCeEEEEEeccC------c---CchhHHHHHHHHHHhcCC--CCceEEecceEEeCCeeEE
Q 004835          206 EEEEGSGGYGTVYRARRKNDGTVVAIKCPHA------N---ASKHYVSNELRMLERFGG--KNFIIKYEGCFKCGDSDCF  274 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~------~---~~~~~~~~Ei~iL~~L~h--~n~Ivkl~~~~~~~~~~~L  274 (728)
                      .+.||.|....||++....+++.|+||.-..      .   ....+...|..+|..+..  |..+++++.+  ++...++
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~l  108 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  108 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEE
Confidence            4568999999999999877788999996431      1   123456678888876642  2335555533  4566789


Q ss_pred             EEeccCCC
Q 004835          275 VLEHVKHD  282 (728)
Q Consensus       275 V~E~~~~~  282 (728)
                      |||++.+.
T Consensus       109 vmE~L~~~  116 (392)
T d2pula1         109 VMEDLSHL  116 (392)
T ss_dssp             EECCCTTS
T ss_pred             EEeccCCc
Confidence            99999764

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.73  E-value=0.0014  Score=68.79  Aligned_cols=73  Identities=11%  Similarity=0.087  Sum_probs=53.0

Q ss_pred             EEEecccCceEEEEEEEcC-------CCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceEEecceEEeCCeeEEEEec
Q 004835          206 EEEEGSGGYGTVYRARRKN-------DGTVVAIKCPHANASKHYVSNELRMLERFGGKNFIIKYEGCFKCGDSDCFVLEH  278 (728)
Q Consensus       206 ~~~LG~G~fG~Vy~a~~~~-------~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Ivkl~~~~~~~~~~~LV~E~  278 (728)
                      ++.|+.|-.-.+|++....       ..+.|.+++.-.........+|..+++.+...++.+++++++..    .+|+||
T Consensus        47 v~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~----g~I~ef  122 (395)
T d1nw1a_          47 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEEY  122 (395)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEECC
T ss_pred             EEEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcchhhHHHHHHHHHHHHHhCCCCCeEEEEcCC----ceEEEE
Confidence            3578888888999998753       24678888876433344456899999888766656778777642    689999


Q ss_pred             cCCC
Q 004835          279 VKHD  282 (728)
Q Consensus       279 ~~~~  282 (728)
                      +.|.
T Consensus       123 i~g~  126 (395)
T d1nw1a_         123 IPSR  126 (395)
T ss_dssp             CCEE
T ss_pred             eccc
Confidence            9874

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.70  E-value=0.0015  Score=65.88  Aligned_cols=142  Identities=13%  Similarity=0.054  Sum_probs=76.2

Q ss_pred             CCCeeEEEEecccCceEEEEEEEcCCCeEEEEEeccCcCchhHHHHHHHHHHhcCCCCceE-Eec----c--eEEeCCee
Q 004835          200 FESFIVEEEEGSGGYGTVYRARRKNDGTVVAIKCPHANASKHYVSNELRMLERFGGKNFII-KYE----G--CFKCGDSD  272 (728)
Q Consensus       200 ~~~y~i~~~LG~G~fG~Vy~a~~~~~g~~VAIK~i~~~~~~~~~~~Ei~iL~~L~h~n~Iv-kl~----~--~~~~~~~~  272 (728)
                      ++...-.+.|..|---+.|+....  +..+++|+.........+..|+.++..|....+-+ ...    +  ...-....
T Consensus        17 lg~~~~~~~i~~G~~N~ny~v~t~--~g~yVLri~~~~~~~~~l~~~~~~l~~L~~~g~pvp~pi~~~~g~~~~~~~~~~   94 (316)
T d2ppqa1          17 VGSLTSYKGIAEGVENSNFLLHTT--KDPLILTLYEKRVEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRP   94 (316)
T ss_dssp             CCCEEEEEEECC---EEEEEEEES--SCCEEEEEECC---CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEE
T ss_pred             CCCceEeecCCCCcccCeEEEEEC--CCcEEEEEcCCCCCHHHHHHHHHHHHhhhhccccccccceecCCCcceeeeccc
Confidence            344555566778888889999874  34589999876555566677888887776443111 111    1  11123455


Q ss_pred             EEEEeccCCCChH-----HH------h-------hc--------C------------------ChHHHHHHHHHHHHHHH
Q 004835          273 CFVLEHVKHDRPE-----VL------K-------KE--------I------------------DLSQLQWYGYCLFRALA  308 (728)
Q Consensus       273 ~LV~E~~~~~~l~-----~l------~-------~~--------l------------------~~~~~~~i~~QIl~aL~  308 (728)
                      +.++.++.+....     ..      .       ..        .                  ........+..+...+.
T Consensus        95 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  174 (316)
T d2ppqa1          95 AALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLA  174 (316)
T ss_dssp             EEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHH
T ss_pred             ceeeeecccccccccchhHHHHHHHHHHhhhhhhhhcccccccccchhhcchhhhHHHHhhhhcchhHHHHHHHHHHhhh
Confidence            6666666553211     00      0       00        0                  00111112222222222


Q ss_pred             HHHh----CCcEeccCCCCceEeecCCCceEEEeeecccc
Q 004835          309 SLHK----QGIVHRDVKPGNFLFSCKAVKGYLIDFNLAMV  344 (728)
Q Consensus       309 yLHs----~gIIHRDIKPeNILld~~~~~~kL~DFGlA~~  344 (728)
                      -.+.    .||||+|+.++||+++ ++...-|+||+.+..
T Consensus       175 ~~~~~~L~~giIHgDl~~dNvl~~-~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         175 AHWPKDLPAGVIHADLFQDNVFFL-GDELSGLIDFYFACN  213 (316)
T ss_dssp             HHCCCSSCEEEECSCCCGGGEEEE-TTEEEEECCCTTCEE
T ss_pred             ccCccccccccccCCcchhhhhcc-cccceeEeccccccc
Confidence            2222    4799999999999998 554457999999875

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0012  Score=67.64  Aligned_cols=67  Identities=10%  Similarity=0.072  Sum_probs=45.7

Q ss_pred             eEEEEEEEcCCCeEEEEEeccCcC-chhHHHHHHHHHHhcCCCCc-eEEec-----ceEEeCCeeEEEEeccCCC
Q 004835          215 GTVYRARRKNDGTVVAIKCPHANA-SKHYVSNELRMLERFGGKNF-IIKYE-----GCFKCGDSDCFVLEHVKHD  282 (728)
Q Consensus       215 G~Vy~a~~~~~g~~VAIK~i~~~~-~~~~~~~Ei~iL~~L~h~n~-Ivkl~-----~~~~~~~~~~LV~E~~~~~  282 (728)
                      -.||++.. .+|..|++|+.+... ..+++..|+..+..|..... ++...     ..+...+..+.|++++.|.
T Consensus        36 N~vy~v~~-~dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~  109 (325)
T d1zyla1          36 NRVYQFQD-EDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGR  109 (325)
T ss_dssp             SEEEEECC-TTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCE
T ss_pred             ceeEEEEc-CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCc
Confidence            58999987 478899999987653 45678889988887754321 11111     1234566788999998863