Citrus Sinensis ID: 004854
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 727 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VY10 | 907 | Probable ubiquitin-conjug | yes | no | 0.950 | 0.761 | 0.496 | 0.0 | |
| Q9ZVX1 | 1102 | Probable ubiquitin-conjug | no | no | 0.940 | 0.620 | 0.330 | 1e-113 | |
| Q9LUQ5 | 609 | Probable ubiquitin-conjug | no | no | 0.127 | 0.152 | 0.6 | 1e-29 | |
| Q8GY87 | 543 | Probable ubiquitin-conjug | no | no | 0.126 | 0.169 | 0.606 | 2e-26 | |
| Q6ZPJ3 | 1288 | Ubiquitin-conjugating enz | yes | no | 0.236 | 0.133 | 0.297 | 4e-14 | |
| Q9C0C9 | 1292 | Ubiquitin-conjugating enz | yes | no | 0.235 | 0.132 | 0.296 | 2e-13 | |
| Q11076 | 728 | Probable ubiquitin-conjug | no | no | 0.090 | 0.090 | 0.428 | 3e-07 | |
| Q9NR09 | 4857 | Baculoviral IAP repeat-co | no | no | 0.132 | 0.019 | 0.327 | 4e-07 | |
| O88738 | 4882 | Baculoviral IAP repeat-co | no | no | 0.132 | 0.019 | 0.327 | 4e-07 | |
| Q7ZY08 | 192 | Ubiquitin-conjugating enz | N/A | no | 0.086 | 0.328 | 0.365 | 2e-05 |
| >sp|Q8VY10|UBC24_ARATH Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1 | Back alignment and function desciption |
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Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/717 (49%), Positives = 487/717 (67%), Gaps = 26/717 (3%)
Query: 23 HEENDFLYGGQATSILSSLEESIGKIDDFLSFDRGFTHGDIVRSVTDPSGQMGRVININM 82
HEE +F YGG+A +I S+LEE+IGKID+FLSF+RGF +GDIVRS T+PSGQ GRVINI+M
Sbjct: 21 HEEVEFSYGGRAQNIFSNLEETIGKIDEFLSFERGFMYGDIVRSATEPSGQSGRVINIDM 80
Query: 83 LVDLEGIPGYIIKDVNSKNILKIRSISVGDFVVLGAWLGRVDKVIDSVNIVLDDGSKYEV 142
V+LE G I+K+V++K + K+RSIS+ D+V+ G W+GRVDK+++ V++ LDDG+ YEV
Sbjct: 81 FVNLESTHGKIMKEVDTKRLQKLRSISLSDYVINGPWVGRVDKIVERVSVTLDDGTNYEV 140
Query: 143 TAVDHEKLLPISPSLLEDSQYPYYPGQRVKVRLSTV-KSVSWLCGTGRENQVEGTVCKVD 201
+KL+ I P+LLEDSQY YYPGQRV+V+L+ +S +WLCGT R QV GTVC V+
Sbjct: 141 LVDGQDKLVAIPPNLLEDSQYSYYPGQRVQVKLAHAPRSTTWLCGTWRGTQVMGTVCTVE 200
Query: 202 AGLVYVDWLASALMGSDLNLAAPPRLQDSKNLTLLSGFSHANWQLGDWCMLPTADDKVIT 261
AGLVYVDW+AS +M D NL AP LQ+ ++LTLL SHA+WQLGDWC+LP + I
Sbjct: 201 AGLVYVDWVASIVMEGDRNLTAPQALQNPESLTLLPCVSHASWQLGDWCILPGSSHCDIA 260
Query: 262 EPTFINSSTCD----NKKLERGLRRRNPGSSLAEVFVIVKTKTKFDVVWQDGSCSVGLDS 317
E N + + +K ++G R S L E+FVI KTK K V+WQDGSCS+G+DS
Sbjct: 261 ERQTPNVAAYNLNECHKTFQKGFNRNMQNSGLDELFVITKTKMKVAVMWQDGSCSLGVDS 320
Query: 318 QALLPVNVVNSHEFWPDQFVLEKGISDDPHIPSGQRWGVVQGVDAKERTVTVQWRAKANS 377
Q LLPV VN+H+FWP+QFV+EK + ++WGVV+ V+AKE+TV VQW +
Sbjct: 321 QQLLPVGAVNAHDFWPEQFVVEKETCN------SKKWGVVKAVNAKEQTVKVQWTIQVEK 374
Query: 378 DSDANQSE-----VSAYELVEHPDYSYCYGDVVFKLV-QNQFGMCKDAALEGTISD-WEQ 430
++ E VSAYEL+EHPD+ +C+ DVV KL+ + +F D + +
Sbjct: 375 EATGCVDEVMEEIVSAYELLEHPDFGFCFSDVVVKLLPEGKFDPNADTIVATEAKHLLTE 434
Query: 431 NDCPDTHYSSCIGIVTGFKDGAVEVRWATGFTTKVGPNEIYGVEKYEGSATTPGTNEGNI 490
+D ++ S IG+VTGFK+G+V+V+WA G T+KV P EI+ +E+ E S ++ ++EG++
Sbjct: 435 SDYSGAYFLSSIGVVTGFKNGSVKVKWANGSTSKVAPCEIWKMERSEYSNSSTVSSEGSV 494
Query: 491 EELNREL--HGKQYSSHGGENLPSFDGSGEGCKKYPWESSSFSLACAAIGFFTSIVTSLF 548
++L++++ + S+H L GE C + E SSF L AAIGF T++ +SLF
Sbjct: 495 QDLSQKISQSDEASSNHQETGLVKLYSVGESCNENIPECSSFFLPKAAIGFITNLASSLF 554
Query: 549 GPLGSTSQSDSVSSGHIPEDANETEILLEKEVFEAKNICCEPHPSELQTRGKTNLIQEVE 608
G GSTS S S + ED +++E+L+++ N E + E+ T ++
Sbjct: 555 GYQGSTSVISSHSRCNDSEDQSDSEVLVQETAESYDN--SETNSGEVDM--TTTMVNIPI 610
Query: 609 EDPEKEEFKAFTACENSEDQ--FRQFDMVSDSSDHHFLGASKGLALSQVKRAWVKKVQQE 666
E + T ENS +Q FRQFDMV+D SDHHFL + KGLA SQV ++WVKKVQQE
Sbjct: 611 EGKGINKTLDSTLLENSRNQVRFRQFDMVNDCSDHHFLSSDKGLAQSQVTKSWVKKVQQE 670
Query: 667 WSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPV 723
WS LE +LP TIYVR+ E+R+DL+RAA+VGA GTPYHDGLFFFDI LPP+YPHEPP+
Sbjct: 671 WSNLEANLPNTIYVRVCEERMDLLRAALVGAPGTPYHDGLFFFDIMLPPQYPHEPPM 727
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Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9 |
| >sp|Q9ZVX1|UBC23_ARATH Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9LUQ5|UBC25_ARATH Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8GY87|UBC26_ARATH Probable ubiquitin-conjugating enzyme E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6ZPJ3|UBE2O_MOUSE Ubiquitin-conjugating enzyme E2 O OS=Mus musculus GN=Ube2o PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3 | Back alignment and function description |
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| >sp|Q11076|UBC17_CAEEL Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=3 SV=3 | Back alignment and function description |
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| >sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|O88738|BIRC6_MOUSE Baculoviral IAP repeat-containing protein 6 OS=Mus musculus GN=Birc6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q7ZY08|UBE2T_XENLA Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 727 | ||||||
| 359496174 | 944 | PREDICTED: probable ubiquitin-conjugatin | 0.986 | 0.759 | 0.598 | 0.0 | |
| 224125510 | 924 | predicted protein [Populus trichocarpa] | 0.982 | 0.772 | 0.593 | 0.0 | |
| 356549329 | 919 | PREDICTED: probable ubiquitin-conjugatin | 0.975 | 0.771 | 0.545 | 0.0 | |
| 356519588 | 927 | PREDICTED: probable ubiquitin-conjugatin | 0.987 | 0.774 | 0.543 | 0.0 | |
| 224077108 | 925 | predicted protein [Populus trichocarpa] | 0.987 | 0.776 | 0.567 | 0.0 | |
| 255556063 | 925 | ubiquitin conjugating enzyme, putative [ | 0.955 | 0.751 | 0.564 | 0.0 | |
| 356548723 | 933 | PREDICTED: probable ubiquitin-conjugatin | 0.987 | 0.769 | 0.544 | 0.0 | |
| 356555289 | 924 | PREDICTED: probable ubiquitin-conjugatin | 0.980 | 0.771 | 0.534 | 0.0 | |
| 357446597 | 954 | Ubiquitin-conjugating enzyme family prot | 0.965 | 0.735 | 0.528 | 0.0 | |
| 449433838 | 910 | PREDICTED: probable ubiquitin-conjugatin | 0.968 | 0.773 | 0.510 | 0.0 |
| >gi|359496174|ref|XP_002267490.2| PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Vitis vinifera] gi|297735992|emb|CBI23966.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/755 (59%), Positives = 547/755 (72%), Gaps = 38/755 (5%)
Query: 2 MDALFSDSDWESFSESGSSEGHEENDFLYGGQATSILSSLEESIGKIDDFLSFDRGFTHG 61
MD L SDSDWESFSESGSSE E+ D +YGG+A SILSSLEE+IGKIDDFLSF+RGF HG
Sbjct: 1 MDMLLSDSDWESFSESGSSEDQEDIDSMYGGKAQSILSSLEETIGKIDDFLSFERGFIHG 60
Query: 62 DIVRSVTDPSGQMGRVININMLVDLEGIPGYIIKDVNSKNILKIRSISVGDFVVLGAWLG 121
DIV SV DPSGQMGRV++++MLVDLE + G +IKDVNSK +LKIRSIS+GD+VVLG WLG
Sbjct: 61 DIVCSVADPSGQMGRVVDVDMLVDLENVYGKVIKDVNSKKLLKIRSISIGDYVVLGPWLG 120
Query: 122 RVDKVIDSVNIVLDDGSKYEVTAVDHEKLLPISPSLLEDSQYPYYPGQRVKVRLSTV-KS 180
RV KV+DSV I+ DDG+K EVTA DH+K+ PISP LLED QY YYPGQRV+VRLST+ KS
Sbjct: 121 RVSKVVDSVTILFDDGAKCEVTATDHKKIFPISPDLLEDPQYQYYPGQRVQVRLSTLSKS 180
Query: 181 VSWLCGTGRENQVEGTVCKVDAGLVYVDWLASALMGSDLNLAAPPRLQDSKNLTLLSGFS 240
WLCG +EN+ +GTVC V+AGLV VDWLASAL+GS L+L APP QDSK LTLLS FS
Sbjct: 181 ARWLCGAWKENRTDGTVCAVEAGLVSVDWLASALVGSGLSLPAPPCWQDSKKLTLLSCFS 240
Query: 241 HANWQLGDWCMLPTADDKVITEPTFINSSTCD----NKKLERGLRRRNPGSSLAEVFVIV 296
HANWQLGDWCMLP +D K + E ++ STC+ + KLERG +R N +FV+V
Sbjct: 241 HANWQLGDWCMLPVSDRKGVMEKNCLSVSTCEHILGHMKLERGFKRMNLSFERENIFVMV 300
Query: 297 KTKTKFDVVWQDGSCSVGLDSQALLPVNVVNSHEFWPDQFVLEKGISDDPHIPSGQRWGV 356
K KTK DV WQDGSCSVGLD Q+L P+N+V++HEFWP+QFVLEKG DDP++ S QRWGV
Sbjct: 301 KIKTKVDVQWQDGSCSVGLDPQSLFPINIVDAHEFWPEQFVLEKGTCDDPNVSSSQRWGV 360
Query: 357 VQGVDAKERTVTVQWRAKA-NSDSDAN----QSEVSAYELVEHPDYSYCYGDVVFKLVQN 411
V+ VDAKER V V+W+ A N +D + VSAYELVEHPDYSYC GD VF+L +N
Sbjct: 361 VEVVDAKERIVKVKWKNFALNEGNDLEEGLMEETVSAYELVEHPDYSYCLGDFVFRLERN 420
Query: 412 QF-----------------GMCKDAALEGTISDWEQNDCPDTHYSSCIGIVTGFKDGAVE 454
Q GM K+ L+G +QN+ D +YSS IG V GFKDG V+
Sbjct: 421 QLVDQADGQNFNNNAIAEMGMGKEIPLKGETCSKDQNEYSDKYYSSHIGNVVGFKDGGVK 480
Query: 455 VRWATGFTTKVGPNEIYGVEKYEGSATTPGTNEGNIEELNREL-HGKQYSSHGGE-NLPS 512
V+WATG TT+V PNEI+ ++K+EGS+TTP E NIEELN EL SS G E ++
Sbjct: 481 VKWATGLTTQVAPNEIFRIDKFEGSSTTP---EENIEELNHELIEDDNQSSPGKEKDVSD 537
Query: 513 FDGSGEGCKKYPWESSSFSLACAAIGFFTSIVTSLFGPLGSTSQSDSVSSGHIPEDANET 572
+ + C KYPW+S+S L A IGFF SI SLFG S S +SS H ED NE+
Sbjct: 538 LNIVDKDCTKYPWQSTSSLLPRAVIGFFLSIAASLFGSPDSALLSGQLSSSHCSEDENES 597
Query: 573 EILLEKEVFEAKNICCEPHP---SELQTRGKTNLIQEVEEDPEKEEFKAFTACENSEDQF 629
L K V + N C E +LQ G+T++ +E++E ++ F++ + +QF
Sbjct: 598 GTHL-KGVLNSCNPCTEEQHIVVDDLQASGETSVKEEIKEIGGDKDL-PFSSGSKNPEQF 655
Query: 630 RQFDMVSDSSDHHFL-GASKGLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVD 688
QFDMV D SDHHF+ A KGLALSQVK W+KKVQQEWS+LEK+LPETIYVRI+E+R+D
Sbjct: 656 SQFDMVCDCSDHHFVDSAGKGLALSQVKIGWLKKVQQEWSMLEKNLPETIYVRIYEERMD 715
Query: 689 LIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPV 723
L+RAAIVG TPYHDGLFFFDIFLPPEYPHEPP+
Sbjct: 716 LLRAAIVGPSATPYHDGLFFFDIFLPPEYPHEPPL 750
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125510|ref|XP_002329823.1| predicted protein [Populus trichocarpa] gi|222870885|gb|EEF08016.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356549329|ref|XP_003543046.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356519588|ref|XP_003528454.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224077108|ref|XP_002305135.1| predicted protein [Populus trichocarpa] gi|222848099|gb|EEE85646.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255556063|ref|XP_002519066.1| ubiquitin conjugating enzyme, putative [Ricinus communis] gi|223541729|gb|EEF43277.1| ubiquitin conjugating enzyme, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356548723|ref|XP_003542749.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356555289|ref|XP_003545966.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357446597|ref|XP_003593574.1| Ubiquitin-conjugating enzyme family protein [Medicago truncatula] gi|355482622|gb|AES63825.1| Ubiquitin-conjugating enzyme family protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449433838|ref|XP_004134704.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 727 | ||||||
| TAIR|locus:2057589 | 907 | PHO2 "AT2G33770" [Arabidopsis | 0.943 | 0.756 | 0.490 | 5.9e-176 | |
| TAIR|locus:2039380 | 1102 | UBC23 "AT2G16920" [Arabidopsis | 0.309 | 0.204 | 0.478 | 1e-113 | |
| UNIPROTKB|F1M403 | 1287 | Ube2o "Protein Ube2o" [Rattus | 0.246 | 0.139 | 0.297 | 1.7e-39 | |
| UNIPROTKB|Q9C0C9 | 1292 | UBE2O "Ubiquitin-conjugating e | 0.301 | 0.169 | 0.290 | 3.5e-39 | |
| UNIPROTKB|F1N3I3 | 1287 | UBE2O "Uncharacterized protein | 0.301 | 0.170 | 0.286 | 4.3e-39 | |
| MGI|MGI:2444266 | 1288 | Ube2o "ubiquitin-conjugating e | 0.301 | 0.170 | 0.290 | 4.5e-39 | |
| RGD|1310297 | 1289 | Ube2o "ubiquitin-conjugating e | 0.246 | 0.138 | 0.297 | 2.4e-38 | |
| UNIPROTKB|I3L6C1 | 1294 | UBE2O "Uncharacterized protein | 0.246 | 0.138 | 0.292 | 3.3e-38 | |
| UNIPROTKB|F1PG13 | 1138 | UBE2O "Uncharacterized protein | 0.246 | 0.157 | 0.292 | 1.5e-36 | |
| TAIR|locus:2090096 | 609 | UBC25 "ubiquitin-conjugating e | 0.127 | 0.152 | 0.6 | 9e-26 |
| TAIR|locus:2057589 PHO2 "AT2G33770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1709 (606.7 bits), Expect = 5.9e-176, P = 5.9e-176
Identities = 350/714 (49%), Positives = 479/714 (67%)
Query: 27 DFLYGGQATSILSSLEESIGKIDDFLSFDRGFTHGDIVRSVTDPSGQMGRVININMLVDL 86
+F YGG+A +I S+LEE+IGKID+FLSF+RGF +GDIVRS T+PSGQ GRVINI+M V+L
Sbjct: 25 EFSYGGRAQNIFSNLEETIGKIDEFLSFERGFMYGDIVRSATEPSGQSGRVINIDMFVNL 84
Query: 87 EGIPGYIIKDVNSKNILKIRSISVGDFVVLGAWLGRVDKVIDSVNIVLDDGSKYEVTAVD 146
E G I+K+V++K + K+RSIS+ D+V+ G W+GRVDK+++ V++ LDDG+ YEV
Sbjct: 85 ESTHGKIMKEVDTKRLQKLRSISLSDYVINGPWVGRVDKIVERVSVTLDDGTNYEVLVDG 144
Query: 147 HEKLLPISPSLLEDSQYPYYPGQRVKVRLSTV-KSVSWLCGTGRENQVEGTVCKVDAGLV 205
+KL+ I P+LLEDSQY YYPGQRV+V+L+ +S +WLCGT R QV GTVC V+AGLV
Sbjct: 145 QDKLVAIPPNLLEDSQYSYYPGQRVQVKLAHAPRSTTWLCGTWRGTQVMGTVCTVEAGLV 204
Query: 206 YVDWLASALMGSDLNLAAPPRLQDSKNLTLLSGFSHANWQLGDWCMLPTADDKVITE--- 262
YVDW+AS +M D NL AP LQ+ ++LTLL SHA+WQLGDWC+LP + I E
Sbjct: 205 YVDWVASIVMEGDRNLTAPQALQNPESLTLLPCVSHASWQLGDWCILPGSSHCDIAERQT 264
Query: 263 PTFI--NSSTCDNKKLERGLRRRNPGSSLAEVFVIVKTKTKFDVVWQDGSCSVGLDSQAL 320
P N + C +K ++G R S L E+FVI KTK K V+WQDGSCS+G+DSQ L
Sbjct: 265 PNVAAYNLNEC-HKTFQKGFNRNMQNSGLDELFVITKTKMKVAVMWQDGSCSLGVDSQQL 323
Query: 321 LPVNVVNSHEFWPDQFVLEKGISDDPHIPSGQRWGVVQGVDAKERTVTVQWRAKANSDS- 379
LPV VN+H+FWP+QFV+EK + ++WGVV+ V+AKE+TV VQW + ++
Sbjct: 324 LPVGAVNAHDFWPEQFVVEKETCNS------KKWGVVKAVNAKEQTVKVQWTIQVEKEAT 377
Query: 380 ---DANQSE-VSAYELVEHPDYSYCYGDVVFKLV-QNQFGMCKDAALEGTISDW-EQNDC 433
D E VSAYEL+EHPD+ +C+ DVV KL+ + +F D + ++D
Sbjct: 378 GCVDEVMEEIVSAYELLEHPDFGFCFSDVVVKLLPEGKFDPNADTIVATEAKHLLTESDY 437
Query: 434 PDTHYSSCIGIVTGFKDGAVEVRWATGFTTKVGPNEIYGVEKYEGSATTPGTNEGNIEEL 493
++ S IG+VTGFK+G+V+V+WA G T+KV P EI+ +E+ E S ++ ++EG++++L
Sbjct: 438 SGAYFLSSIGVVTGFKNGSVKVKWANGSTSKVAPCEIWKMERSEYSNSSTVSSEGSVQDL 497
Query: 494 NRELH--GKQYSSHGGENLPSFDGSGEGCKKYPWESSSFSLACAAIGFFTSIVTSLFGPL 551
++++ + S+H L GE C + E SSF L AAIGF T++ +SLFG
Sbjct: 498 SQKISQSDEASSNHQETGLVKLYSVGESCNENIPECSSFFLPKAAIGFITNLASSLFGYQ 557
Query: 552 GXXXXXXXXXXGHIPEDANETEILLEKEVFEAKNICCEPHPSELQTRGKTNLIQXXXXXX 611
G + ED +++E+L+++ N E + E+ T ++
Sbjct: 558 GSTSVISSHSRCNDSEDQSDSEVLVQETAESYDN--SETNSGEVDMT--TTMVNIPIEGK 613
Query: 612 XXXXFKAFTACENSEDQ--FRQFDMVSDSSDHHFLGASKGLALSQVKRAWVKKVQQEWSI 669
T ENS +Q FRQFDMV+D SDHHFL + KGLA SQV ++WVKKVQQEWS
Sbjct: 614 GINKTLDSTLLENSRNQVRFRQFDMVNDCSDHHFLSSDKGLAQSQVTKSWVKKVQQEWSN 673
Query: 670 LEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPV 723
LE +LP TIYVR+ E+R+DL+RAA+VGA GTPYHDGLFFFDI LPP+YPHEPP+
Sbjct: 674 LEANLPNTIYVRVCEERMDLLRAALVGAPGTPYHDGLFFFDIMLPPQYPHEPPM 727
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| TAIR|locus:2039380 UBC23 "AT2G16920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1M403 Ube2o "Protein Ube2o" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9C0C9 UBE2O "Ubiquitin-conjugating enzyme E2 O" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1N3I3 UBE2O "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| MGI|MGI:2444266 Ube2o "ubiquitin-conjugating enzyme E2O" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1310297 Ube2o "ubiquitin-conjugating enzyme E2O" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|I3L6C1 UBE2O "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PG13 UBE2O "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| TAIR|locus:2090096 UBC25 "ubiquitin-conjugating enzyme 25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 727 | |||
| cd00195 | 141 | cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca | 4e-17 | |
| pfam00179 | 139 | pfam00179, UQ_con, Ubiquitin-conjugating enzyme | 3e-15 | |
| smart00212 | 145 | smart00212, UBCc, Ubiquitin-conjugating enzyme E2, | 5e-11 | |
| COG5078 | 153 | COG5078, COG5078, Ubiquitin-protein ligase [Posttr | 3e-07 | |
| PTZ00390 | 152 | PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; | 8e-05 | |
| PLN00172 | 147 | PLN00172, PLN00172, ubiquitin conjugating enzyme; | 1e-04 |
| >gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 4e-17
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
K++Q+E L+K P I E+ + I G TPY G+F DI P +YP
Sbjct: 1 SKRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPF 60
Query: 720 EPP 722
+PP
Sbjct: 61 KPP 63
|
This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141 |
| >gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme | Back alignment and domain information |
|---|
| >gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues | Back alignment and domain information |
|---|
| >gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 727 | |||
| KOG0895 | 1101 | consensus Ubiquitin-conjugating enzyme [Posttransl | 100.0 | |
| KOG0417 | 148 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.76 | |
| COG5078 | 153 | Ubiquitin-protein ligase [Posttranslational modifi | 99.74 | |
| PTZ00390 | 152 | ubiquitin-conjugating enzyme; Provisional | 99.68 | |
| PLN00172 | 147 | ubiquitin conjugating enzyme; Provisional | 99.67 | |
| KOG0419 | 152 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.67 | |
| KOG0426 | 165 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.65 | |
| KOG0894 | 244 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.64 | |
| PF00179 | 140 | UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP | 99.57 | |
| cd00195 | 141 | UBCc Ubiquitin-conjugating enzyme E2, catalytic (U | 99.54 | |
| KOG0418 | 200 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.53 | |
| KOG0421 | 175 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.47 | |
| smart00212 | 145 | UBCc Ubiquitin-conjugating enzyme E2, catalytic do | 99.47 | |
| KOG0425 | 171 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.45 | |
| KOG0895 | 1101 | consensus Ubiquitin-conjugating enzyme [Posttransl | 99.33 | |
| KOG0428 | 314 | consensus Non-canonical ubiquitin conjugating enzy | 99.33 | |
| KOG0424 | 158 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.3 | |
| KOG0427 | 161 | consensus Ubiquitin conjugating enzyme [Posttransl | 99.25 | |
| KOG0422 | 153 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.2 | |
| KOG0423 | 223 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.15 | |
| KOG0416 | 189 | consensus Ubiquitin-protein ligase [Posttranslatio | 98.89 | |
| KOG0420 | 184 | consensus Ubiquitin-protein ligase [Posttranslatio | 98.45 | |
| KOG0896 | 138 | consensus Ubiquitin-conjugating enzyme E2 [Posttra | 98.05 | |
| KOG0429 | 258 | consensus Ubiquitin-conjugating enzyme-related pro | 97.76 | |
| PF05773 | 113 | RWD: RWD domain; InterPro: IPR006575 The RWD eukar | 92.34 | |
| smart00591 | 107 | RWD domain in RING finger and WD repeat containing | 91.33 | |
| PF15057 | 124 | DUF4537: Domain of unknown function (DUF4537) | 85.12 | |
| KOG1999 | 1024 | consensus RNA polymerase II transcription elongati | 82.87 | |
| PF08694 | 161 | UFC1: Ubiquitin-fold modifier-conjugating enzyme 1 | 81.6 |
| >KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=345.59 Aligned_cols=675 Identities=21% Similarity=0.195 Sum_probs=453.6
Q ss_pred CCCCcEEEEeccCceeeeccCceEEeeccccCCCeeeecCCCCCCeEEEEEEe---EEEEEEecCCeeee-C-CCccccc
Q 004854 29 LYGGQATSILSSLEESIGKIDDFLSFDRGFTHGDIVRSVTDPSGQMGRVININ---MLVDLEGIPGYIIK-D-VNSKNIL 103 (727)
Q Consensus 29 l~~g~vrv~w~~g~e~i~~e~~l~L~DR~~~~GDvVr~~~d~~gQ~G~V~~V~---~~vdL~~~~g~vi~-~-V~s~~L~ 103 (727)
...+.+++-|.+-..++..++.++..+|.+..+..+...++++|+.++|+.++ ++++|-.-++.+.+ + .....|.
T Consensus 121 ~~~v~~~v~W~~ns~si~~~~~l~sser~~i~~~~~~~~seats~t~vvq~~~~~~it~dl~~k~~a~y~~~~fst~~l~ 200 (1101)
T KOG0895|consen 121 PTGVPVSVRWTDNSNSIETANSLKSSERLWIALLYLGKASEATSSTNVVQGANAGPITVDLPQKSIAIYKKVLFSTQNLP 200 (1101)
T ss_pred cccCceeeeccccccchhhhcccccccccccccccccccccccCccceeecccccccccccccccccccccchhhcccCC
Confidence 34788999999999999999999999999999999999999999999999999 77888765655555 2 4558889
Q ss_pred cCCCcCCCCEEEeC----Ceee-EEEEEEeeEEEEeCCCCeEEEcccCccccccCCC-CCCCCCCCCcCC--CceeEeec
Q 004854 104 KIRSISVGDFVVLG----AWLG-RVDKVIDSVNIVLDDGSKYEVTAVDHEKLLPISP-SLLEDSQYPYYP--GQRVKVRL 175 (727)
Q Consensus 104 ~i~~f~~GDyVv~g----~WlG-~V~~V~~~v~v~~~dGs~c~v~~~d~~~L~~~~~-~~~~d~~~~~yP--GQ~V~~~~ 175 (727)
+...+..|++...+ .||+ ++..+.++..+.+.+++.|.+....+.+|.++.. .+.++..+.+|+ |+....-.
T Consensus 201 ~t~d~~sg~~~~P~~~~~~~i~sr~~~v~e~~~~lv~d~~~~k~~~~~plrl~~i~kf~~~ed~~~~~~~~k~~~~k~hs 280 (1101)
T KOG0895|consen 201 PTPDTVSGTIRRPFPPNYPGIHSRSHVVKDEPYELVPDFSMLKVETEEPLRLDLIPKFKLVEDKSFHHYAKKGKSSKPHS 280 (1101)
T ss_pred CCCCccccccCCCCCCcccchhccccccccccccccccccccccccccCccccchhhhccccccccccccccCCCCCccc
Confidence 99999999999988 9999 9999999999999999999988888888877664 344677888898 99999888
Q ss_pred Ccc-cccccccCCCCCceeeeEEEEEEeE---EEEEEEEEecccCCCCCCCCCCcccCCCCCcccccccccceecC-Cee
Q 004854 176 STV-KSVSWLCGTGRENQVEGTVCKVDAG---LVYVDWLASALMGSDLNLAAPPRLQDSKNLTLLSGFSHANWQLG-DWC 250 (727)
Q Consensus 176 ~~~-~~~~Wl~g~~~~~r~~gtV~~V~~~---~v~V~Wla~~~~g~~~~~~~P~~~~d~~~L~ll~~f~~~~~qiG-D~~ 250 (727)
.+. ++.+|..+.|.+..++|+......+ .+.+.|++....... .-.-+..+|-|. ++..++.|++|+.| ++|
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~-~glf~Fdiq~P~--~yPa~pp~v~~lt~~~~R 357 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYA-DGLFLFDIQFPD--TYPAVPPHVKYLTGGGVR 357 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCc-CCceeeEeecCC--CCCCCCceeEEeecccee
Confidence 888 9999999999999999998887776 999999998763221 111234556655 99999999999999 999
Q ss_pred eccCC--CCccccCC-----c-cc----cCCCC--------------------Cc-----h----hhc----cc------
Q 004854 251 MLPTA--DDKVITEP-----T-FI----NSSTC--------------------DN-----K----KLE----RG------ 279 (727)
Q Consensus 251 ~lp~~--~~k~~~~~-----~-~~----~~~~~--------------------d~-----~----~~~----~g------ 279 (727)
++|.- +-|-.-++ . .. ..++. .+ + .+. .+
T Consensus 358 ~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~Py~ne~ga~~~~~~a~~~qvs~cv~~~aii~ 437 (1101)
T KOG0895|consen 358 LNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEPYFNEPGALQKRTSADPYQVSKCVSEEAIIE 437 (1101)
T ss_pred ecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcccCcccccccccccccCCCccccccccccchhhh
Confidence 99863 11100000 0 00 00000 00 0 000 00
Q ss_pred ------ccccCC---------C--CCCcceEEEEeeEEEEEEEe---CCCceeeCcCCCceeecccCCCcccCCCcEEEe
Q 004854 280 ------LRRRNP---------G--SSLAEVFVIVKTKTKFDVVW---QDGSCSVGLDSQALLPVNVVNSHEFWPDQFVLE 339 (727)
Q Consensus 280 ------~k~r~~---------~--~~~~~~~~V~~t~T~vdV~W---QDGt~~~~i~st~L~P~~~~d~~Ef~PGd~V~~ 339 (727)
++.|+. . ..+...++|....+.++.-| +||....-..+...+++-.+-++.++=.+.+.+
T Consensus 438 vl~~~~~~Irrpp~~fe~~vqeh~s~~~~~vvievs~y~a~~tl~~~~~~~p~~r~ea~gs~~~~~~~dL~~~~Eq~lee 517 (1101)
T KOG0895|consen 438 VLPMMVYEIRRPPEPFESTVQEHYSSREHDVVIEVSAYRAGATLGAKVDGIPSGREEAAGSIELKFPTDLAGFAEQVLEE 517 (1101)
T ss_pred hhhhhhhhhcCCccccchHHhhhhcccchhhhhhhhhcccCcChhhcCCCcccccccccccccccchhhhhhHHHHHHHh
Confidence 111111 0 12335556666689999999 999988777788888888888888777777766
Q ss_pred cCCCCCCCCCCCCceEEEEeecCCCCEEE-EEceecCCCC--CC-CCceeeeeeecccCCCCccccCcEEEEeccCCccc
Q 004854 340 KGISDDPHIPSGQRWGVVQGVDAKERTVT-VQWRAKANSD--SD-ANQSEVSAYELVEHPDYSYCYGDVVFKLVQNQFGM 415 (727)
Q Consensus 340 k~~~~~~~~~~~~~~GVVqsvd~~eRta~-V~W~~~~~~~--~~-~~~e~VSvYel~~hpd~~~~~GD~V~r~~~~~~~~ 415 (727)
+..+......+.++-|+.+++++.-|+.. .+|+...+.. +. .++++-. ..||++.+++||.|+++.......
T Consensus 518 e~~~~gels~gs~~sg~~ss~na~~rs~~~t~~~t~ldra~eps~~~kkd~~----~~e~~~~~~i~~~l~~lS~~~~al 593 (1101)
T KOG0895|consen 518 EFQCLGELSLGSRDSGETSSLNASIRSSKLTRSLTVLDRAFEPSPVEKKDGV----ALEPGRDHLILDCLSDLSKHSPAL 593 (1101)
T ss_pred hcccccccccCcCccccccccccccccCcccccccccccccCCcccchhhcc----ccCCCcccceeeehhhcccccccc
Confidence 66666666778899999999999999999 8998764332 22 2222222 899999999999999998764300
Q ss_pred -----cc---cccccCCCC-C-CcCCCCCCCCCCCeeEEEeeecCCcEEEEEcCCCeeEeecceeeeeeecCCCCCCCCC
Q 004854 416 -----CK---DAALEGTIS-D-WEQNDCPDTHYSSCIGIVTGFKDGAVEVRWATGFTTKVGPNEIYGVEKYEGSATTPGT 485 (727)
Q Consensus 416 -----~~---~~~~~~~~~-~-~~~~~~~~~~~ls~vG~V~~~~dG~v~V~W~dg~~s~v~p~~l~~v~~~~d~~s~~~~ 485 (727)
.+ +.-+.|-.. . ..+......+..+|++...++..|...|.|.+|..+.|.|.-+|..+ .+.++....+
T Consensus 594 ~~s~~tq~~~e~~~kg~p~~~~e~~~~~~~~t~~s~~~~~s~~~~~~~~~~~~~~~~stv~p~~~~~~g-d~~s~~~~~~ 672 (1101)
T KOG0895|consen 594 PRSSVTQFFPELSFKGNPTCTEEQQLEPATGTGFSTGSTASGLDVEQELVKQRDGTASTVNPVVSYVNG-DAQSEHETGG 672 (1101)
T ss_pred cCCcccccHHHHhhcCCCcCChhhcccccccccccccccccceeeccccccccCCccCccCCeeEEecC-CCcchhhhcc
Confidence 00 011111110 0 01111122256889999999999999999999999999999999997 2222222222
Q ss_pred CCCcccccchhh-cCCcCCCCCCCCCCCCCCCC---CCC-CCCCC--CCccchhhhhhhhhhhhhhhccccCCCCCCCCC
Q 004854 486 NEGNIEELNREL-HGKQYSSHGGENLPSFDGSG---EGC-KKYPW--ESSSFSLACAAIGFFTSIVTSLFGPLGSTSQSD 558 (727)
Q Consensus 486 ~e~~~~~~swEt-~d~~~~~~~~~d~~~~~~~~---~~~-~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~ 558 (727)
-+.. +.-+|++ .+++---...|.+.-.-++. .+. .+.+. .....+++.++|.|.+.+++++| +++.+.+..
T Consensus 673 ~~~~-~~~s~~~~~~e~~~~~~~~~~~l~~s~~~~i~~~~~~e~~~~~~~~~~~~~~ti~~~~~~~s~~~-~~~~~~v~~ 750 (1101)
T KOG0895|consen 673 VESS-ALPSWLLLLREQRCLIEAMSSYLRRSSVLDIANHVPNELGELLRGIASLNLETIEFQSELQSSVF-TRLAKMVTC 750 (1101)
T ss_pred eehh-hccccchhhhhhccCchhHHHHHhHHHHHHHhccCCcccchhhcccccCCcchhhHHHHHHHHHH-hhhhhhhhh
Confidence 2222 2346777 33311111111100000000 000 01111 12334456789999999999999 788777655
Q ss_pred CCCCCCCCCCCchhh--------------hhHHHHHhhhhccCCCCCCccccccccccccccccCCcchhhhhhhccccC
Q 004854 559 SVSSGHIPEDANETE--------------ILLEKEVFEAKNICCEPHPSELQTRGKTNLIQEVEEDPEKEEFKAFTACEN 624 (727)
Q Consensus 559 s~~~~~~~~d~~e~~--------------~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 624 (727)
..+...+ +-++-+. +..+.+..++|++..- . ......+..+.-.+-+....+-...
T Consensus 751 ~~~y~~i-k~~~~~~~~~~~~~~~~~e~~s~~~~~i~~~~e~~~~-~--------a~~~n~~~~d~~~~l~~~s~~~~~~ 820 (1101)
T KOG0895|consen 751 VDTYTNI-KRENVKTGVKPDASKQEPEDLSLLKPDIQKTAEIVYA-S--------ANQANQLKGDVMKKLAFDSFSVVSE 820 (1101)
T ss_pred hhceeee-cceeeecccCCCccccCccccchhhhHHHHHHHHhhh-h--------hhhhhhhhhhhhchhccCCcccccC
Confidence 4443332 2221110 1111111222222110 0 0000000000000000000000000
Q ss_pred CCCCcceeEeccCCCCCccccccccccccccchHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCC
Q 004854 625 SEDQFRQFDMVSDSSDHHFLGASKGLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHD 704 (727)
Q Consensus 625 ~~~~f~~f~~~~~~~dhhf~~~~~~~~~~~~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYeg 704 (727)
+...-.+|++++.+++|||....... ...+.+++..+.|++.|..++|.||+||.+|+||++++++|+||.+|||++
T Consensus 821 ~d~~~~~F~v~~~~~~~h~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~ 897 (1101)
T KOG0895|consen 821 DDDGSLRFDVNYDYMDHHKNANDGNK---AAEAQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQD 897 (1101)
T ss_pred CCchhccccccCchHHHhhhhccccc---HHHHHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCcccc
Confidence 11111689999999999998654432 223388999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCCCCCCCCCeeEe
Q 004854 705 GLFFFDIFLPPEYPHEPPVSFR 726 (727)
Q Consensus 705 G~F~f~I~fP~~YP~~PP~V~F 726 (727)
|+|+|+|+||++||..||.|+|
T Consensus 898 ~~f~fd~~~~~~yp~~pp~~~~ 919 (1101)
T KOG0895|consen 898 GLFFFDFQFPQDYPSSPPLVHY 919 (1101)
T ss_pred ceEEEEeecCCCCCCCCCceEe
Confidence 9999999999999999999987
|
|
| >KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PTZ00390 ubiquitin-conjugating enzyme; Provisional | Back alignment and domain information |
|---|
| >PLN00172 ubiquitin conjugating enzyme; Provisional | Back alignment and domain information |
|---|
| >KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ] | Back alignment and domain information |
|---|
| >cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain | Back alignment and domain information |
|---|
| >KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues | Back alignment and domain information |
|---|
| >KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO) | Back alignment and domain information |
|---|
| >smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain | Back alignment and domain information |
|---|
| >PF15057 DUF4537: Domain of unknown function (DUF4537) | Back alignment and domain information |
|---|
| >KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] | Back alignment and domain information |
|---|
| >PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 727 | ||||
| 3ceg_A | 323 | Crystal Structure Of The Ubc Domain Of Baculoviral | 2e-06 | ||
| 1yh2_A | 169 | Ubiquitin-Conjugating Enzyme Hspc150 Length = 169 | 1e-05 | ||
| 3bzh_A | 194 | Crystal Structure Of Human Ubiquitin-Conjugating En | 9e-05 | ||
| 1qcq_A | 148 | Ubiquitin Conjugating Enzyme Length = 148 | 1e-04 | ||
| 2f4z_A | 193 | Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw | 2e-04 | ||
| 1y6l_A | 149 | Human Ubiquitin Conjugating Enzyme E2e2 Length = 14 | 3e-04 | ||
| 3l1z_A | 157 | Crystal Structure Of The U-Box Domain Of Human E4b | 7e-04 | ||
| 2oxq_A | 152 | Structure Of The Ubch5 :chip U-Box Complex Length = | 8e-04 | ||
| 3ugb_A | 147 | Ubch5c~ubiquitin Conjugate Length = 147 | 9e-04 | ||
| 2fuh_A | 146 | Solution Structure Of The Ubch5cUB NON-Covalent Com | 9e-04 |
| >pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323 | Back alignment and structure |
|
| >pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169 | Back alignment and structure |
| >pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194 | Back alignment and structure |
| >pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148 | Back alignment and structure |
| >pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193 | Back alignment and structure |
| >pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149 | Back alignment and structure |
| >pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157 | Back alignment and structure |
| >pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152 | Back alignment and structure |
| >pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147 | Back alignment and structure |
| >pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 7e-30
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 592 PSELQTRGKTNLIQEVEEDPEKEEFKAFTACENSEDQFRQFDMVSDSSD--------HHF 643
+ K + + + E K + QF F+MVS+ D +H+
Sbjct: 5 KKLGEYSKKAAMKPKPLSVLKSLEEKYVAVMKKL--QFDTFEMVSEDEDGKLGFKVNYHY 62
Query: 644 LGASKGLALSQVKRAWVKKVQQEWSILEKSLPET----IYVRIFEDRVDLIRAAIVGAKG 699
+ K A +++ QE L SLP + ++VR E+R+D+++ I G
Sbjct: 63 MSQVKNAN-DANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPAD 121
Query: 700 TPYHDGLFFFDIFLPPEYPHEPP-VSFR 726
TPY +G F FD++ P +YP PP V+
Sbjct: 122 TPYANGCFEFDVYFPQDYPSSPPLVNLE 149
|
| >1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158 | Back alignment and structure |
|---|
| >3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167 | Back alignment and structure |
|---|
| >2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216 | Back alignment and structure |
|---|
| >2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149 | Back alignment and structure |
|---|
| >1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155 | Back alignment and structure |
|---|
| >1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169 | Back alignment and structure |
|---|
| >2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154 | Back alignment and structure |
|---|
| >2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136 | Back alignment and structure |
|---|
| >3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201 | Back alignment and structure |
|---|
| >2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166 | Back alignment and structure |
|---|
| >1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150 | Back alignment and structure |
|---|
| >2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125 | Back alignment and structure |
|---|
| >2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152 | Back alignment and structure |
|---|
| >2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159 | Back alignment and structure |
|---|
| >2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165 | Back alignment and structure |
|---|
| >2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136 | Back alignment and structure |
|---|
| >2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193 | Back alignment and structure |
|---|
| >3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194 | Back alignment and structure |
|---|
| >3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190 | Back alignment and structure |
|---|
| >3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253 | Back alignment and structure |
|---|
| >1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179 | Back alignment and structure |
|---|
| >2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156 | Back alignment and structure |
|---|
| >2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160 | Back alignment and structure |
|---|
| >2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187 | Back alignment and structure |
|---|
| >1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149 | Back alignment and structure |
|---|
| >1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155 | Back alignment and structure |
|---|
| >1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169 | Back alignment and structure |
|---|
| >2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161 | Back alignment and structure |
|---|
| >4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399 | Back alignment and structure |
|---|
| >1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215 | Back alignment and structure |
|---|
| >2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
| >2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152 | Back alignment and structure |
|---|
| >1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138 | Back alignment and structure |
|---|
| >2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179 | Back alignment and structure |
|---|
| >1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169 | Back alignment and structure |
|---|
| >2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157 | Back alignment and structure |
|---|
| >2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156 | Back alignment and structure |
|---|
| >2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172 | Back alignment and structure |
|---|
| >1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171 | Back alignment and structure |
|---|
| >2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180 | Back alignment and structure |
|---|
| >3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163 | Back alignment and structure |
|---|
| >3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164 | Back alignment and structure |
|---|
| >1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154 | Back alignment and structure |
|---|
| >3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183 | Back alignment and structure |
|---|
| >2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165 | Back alignment and structure |
|---|
| >2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172 | Back alignment and structure |
|---|
| >1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160 | Back alignment and structure |
|---|
| >4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 727 | |||
| 3ceg_A | 323 | Baculoviral IAP repeat-containing protein 6; apopt | 99.75 | |
| 2ayv_A | 166 | Ubiquitin-conjugating enzyme E2; structural genomi | 99.74 | |
| 1zdn_A | 158 | Ubiquitin-conjugating enzyme E2S; structural genom | 99.74 | |
| 2h2y_A | 136 | Ubiquitin-conjugating enzyme; structural genomics, | 99.74 | |
| 2fo3_A | 125 | Ubiquitin-conjugating enzyme; SGC, UBC, structural | 99.74 | |
| 1yrv_A | 169 | Ubiquitin-conjugating ligase MGC351130; structural | 99.73 | |
| 4gpr_A | 151 | Ubiquitin-conjugating enzyme family protein; ubiqu | 99.73 | |
| 2e2c_A | 156 | Ubiquitin conjugating enzyme; ubiquitin conjugatio | 99.72 | |
| 2pwq_A | 216 | Ubiquitin conjugating enzyme; structural genomics | 99.72 | |
| 2a7l_A | 136 | Hypothetical ubiquitin-conjugating enzyme LOC55284 | 99.72 | |
| 2c4o_A | 165 | Ubiquitin-conjugating enzyme E2 D2; thioesterifica | 99.72 | |
| 1yh2_A | 169 | HSPC150 protein similar to ubiquitin-conjugating e | 99.72 | |
| 3h8k_A | 164 | Ubiquitin-conjugating enzyme E2 G2; alpha beta, al | 99.71 | |
| 2c2v_B | 154 | Ubiquitin-conjugating enzyme E2 N; chaperone, heat | 99.71 | |
| 2awf_A | 172 | Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co | 99.71 | |
| 1z2u_A | 150 | Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro | 99.71 | |
| 1ayz_A | 169 | UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin | 99.71 | |
| 2f4w_A | 187 | Ubiquitin-conjugating enzyme E2, J2; endoplasmic r | 99.71 | |
| 3rcz_B | 163 | SUMO-conjugating enzyme UBC9; SUMO-like domain, pr | 99.71 | |
| 2ucz_A | 165 | UBC7, ubiquitin conjugating enzyme; ubiquitin conj | 99.71 | |
| 2q0v_A | 156 | Ubiquitin-conjugating enzyme E2, putative; malaria | 99.7 | |
| 1fxt_A | 149 | Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM | 99.7 | |
| 3rz3_A | 183 | Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj | 99.7 | |
| 2aak_A | 152 | UBC1, ubiquitin conjugating enzyme; ubiquitin conj | 99.7 | |
| 2r0j_A | 149 | Ubiquitin carrier protein; ubiquitin conjugating, | 99.69 | |
| 3bzh_A | 194 | Ubiquitin-conjugating enzyme E2 E1; structural gen | 99.69 | |
| 1jat_A | 155 | Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig | 99.69 | |
| 2a4d_A | 160 | Ubiquitin-conjugating enzyme E2 variant 1; alterna | 99.69 | |
| 1i7k_A | 179 | Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A | 99.68 | |
| 2f4z_A | 193 | Tgtwinscan_2721 - E2 domain; ubiquitin conjugating | 99.67 | |
| 2grr_A | 161 | Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj | 99.67 | |
| 2gjd_A | 157 | Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT | 99.67 | |
| 2bep_A | 159 | Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 | 99.67 | |
| 1jat_B | 138 | Ubiquitin-conjugating enzyme variant MMS2; UEV, li | 99.66 | |
| 2hlw_A | 170 | Ubiquitin-conjugating enzyme E2 variant 1; ubiquit | 99.65 | |
| 3k9o_A | 201 | Ubiquitin-conjugating enzyme E2 K; E2-25K, complex | 99.65 | |
| 2y9m_A | 172 | Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra | 99.63 | |
| 3fn1_B | 167 | NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin | 99.63 | |
| 3e46_A | 253 | Ubiquitin-conjugating enzyme E2-25 kDa; huntington | 99.63 | |
| 1wzv_A | 155 | Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A | 99.63 | |
| 1y8x_A | 160 | Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju | 99.6 | |
| 1tte_A | 215 | Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq | 99.6 | |
| 4ds2_A | 167 | Ubiquitin-conjugating enzyme E2, putative; structu | 99.59 | |
| 2onu_A | 152 | Ubiquitin-conjugating enzyme, putative; UBC, plasm | 99.59 | |
| 2nvu_C | 180 | NEDD8-conjugating enzyme UBC12; multifunction macr | 99.59 | |
| 2z5d_A | 179 | Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig | 99.58 | |
| 4ddg_A | 399 | Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI | 99.58 | |
| 1zuo_A | 186 | Hypothetical protein LOC92912; ligase, ubiquitin-c | 99.56 | |
| 1c4z_D | 154 | UBCH7, ubiquitin conjugating enzyme E2; bilobal st | 99.55 | |
| 1yf9_A | 171 | Ubiquitin carrier protein 4; SGPP, structural geno | 99.52 | |
| 3o2u_A | 190 | NEDD8-conjugating enzyme UBC12; E2 conjugase, liga | 99.51 | |
| 2z6o_A | 172 | UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p | 99.23 | |
| 3kpa_A | 168 | Probable ubiquitin fold modifier conjugating ENZY; | 98.33 | |
| 3r3q_A | 162 | Suppressor protein STP22 of temperature-sensitive | 97.52 | |
| 3obq_A | 146 | Tumor susceptibility gene 101 protein; protein tra | 94.95 | |
| 2ebm_A | 128 | RWD domain-containing protein 1; alpha+beta sandwi | 91.91 | |
| 2day_A | 128 | Ring finger protein 25; ligase, metal-binding, UB1 | 90.61 | |
| 2yz0_A | 138 | Serine/threonine-protein kinase GCN2; A-B-B-B-B-A- | 89.61 | |
| 1ukx_A | 137 | GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple | 84.48 |
| >3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-18 Score=184.71 Aligned_cols=103 Identities=34% Similarity=0.630 Sum_probs=87.5
Q ss_pred CCCCCcceeEeccCCCC--------CccccccccccccccchHHHHHHHHHHHHHHhCCCC----CEEEEEcCCCCceEE
Q 004854 624 NSEDQFRQFDMVSDSSD--------HHFLGASKGLALSQVKRAWVKKVQQEWSILEKSLPE----TIYVRIFEDRVDLIR 691 (727)
Q Consensus 624 ~~~~~f~~f~~~~~~~d--------hhf~~~~~~~~~~~~~~~~~kRL~kEl~~L~~~~p~----gI~v~~~ednl~~w~ 691 (727)
.+..+|.+|+++.+.+| |||.+..... ....+..+.+||+||++.|++++|+ ++++.+.++||++|+
T Consensus 35 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~ 113 (323)
T 3ceg_A 35 MKKLQFDTFEMVSEDEDGKLGFKVNYHYMSQVKNA-NDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMK 113 (323)
T ss_dssp HHTTSEEEECCEEECTTSCEEESSCCTTHHHHHTC-CCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEE
T ss_pred HHHhcCceeeecccccccccccccchHHHhhhhcc-CCCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccE
Confidence 46789999999987665 6775432221 1245678899999999999999887 567888999999999
Q ss_pred EEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 692 AAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 692 ~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
++|.||.+|||+||+|+|+|.||++||++||+|+|+
T Consensus 114 ~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~ 149 (323)
T 3ceg_A 114 VLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE 149 (323)
T ss_dssp EEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred EEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence 999999999999999999999999999999999995
|
| >2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
| >2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica} | Back alignment and structure |
|---|
| >2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} | Back alignment and structure |
|---|
| >2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A | Back alignment and structure |
|---|
| >1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A | Back alignment and structure |
|---|
| >2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A | Back alignment and structure |
|---|
| >1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... | Back alignment and structure |
|---|
| >1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C | Back alignment and structure |
|---|
| >1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A | Back alignment and structure |
|---|
| >3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A | Back alignment and structure |
|---|
| >2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A | Back alignment and structure |
|---|
| >2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A | Back alignment and structure |
|---|
| >3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A | Back alignment and structure |
|---|
| >1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F | Back alignment and structure |
|---|
| >2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A | Back alignment and structure |
|---|
| >1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A | Back alignment and structure |
|---|
| >2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B | Back alignment and structure |
|---|
| >2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A | Back alignment and structure |
|---|
| >1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B | Back alignment and structure |
|---|
| >2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A | Back alignment and structure |
|---|
| >2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A | Back alignment and structure |
|---|
| >3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A | Back alignment and structure |
|---|
| >3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* | Back alignment and structure |
|---|
| >1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A | Back alignment and structure |
|---|
| >1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 | Back alignment and structure |
|---|
| >4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} | Back alignment and structure |
|---|
| >2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A | Back alignment and structure |
|---|
| >1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A | Back alignment and structure |
|---|
| >1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C | Back alignment and structure |
|---|
| >1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 | Back alignment and structure |
|---|
| >3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C | Back alignment and structure |
|---|
| >2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A | Back alignment and structure |
|---|
| >3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4 | Back alignment and structure |
|---|
| >3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A* | Back alignment and structure |
|---|
| >3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A | Back alignment and structure |
|---|
| >2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A | Back alignment and structure |
|---|
| >2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 727 | ||||
| d1z2ua1 | 147 | d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U | 5e-13 | |
| d1yh2a1 | 154 | d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U | 5e-11 | |
| d1ayza_ | 153 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B | 7e-10 | |
| d1y6la_ | 148 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H | 1e-09 | |
| d1s1qa_ | 141 | d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10 | 2e-09 | |
| d1wzva1 | 150 | d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U | 2e-09 | |
| d1zdna1 | 151 | d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U | 2e-09 | |
| d1jata_ | 152 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B | 3e-09 | |
| d2e2ca_ | 156 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C | 7e-09 | |
| d1z3da1 | 149 | d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U | 1e-08 | |
| d1j7db_ | 149 | d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H | 3e-08 | |
| d2fo3a1 | 109 | d.20.1.1 (A:9-117) Putative ubiquitin-conjugating | 3e-08 | |
| d2uyza1 | 156 | d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U | 4e-08 | |
| d2f4wa1 | 157 | d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, | 1e-07 | |
| d2a7la1 | 117 | d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 | 2e-07 | |
| d2a4da1 | 139 | d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, | 3e-07 | |
| d1yrva1 | 148 | d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U | 4e-07 | |
| d1i7ka_ | 146 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H | 5e-07 | |
| d2ucza_ | 164 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B | 8e-07 | |
| d1fzya_ | 149 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B | 9e-07 | |
| d2awfa1 | 125 | d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U | 1e-06 | |
| d2bepa1 | 154 | d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2 | 2e-06 | |
| d2z5da1 | 152 | d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, | 2e-06 | |
| d1yf9a1 | 158 | d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, | 3e-06 | |
| d1y8xa1 | 157 | d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, | 7e-06 | |
| d1pzva_ | 161 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N | 9e-06 | |
| d1jatb_ | 136 | d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B | 1e-05 | |
| d2f4za1 | 161 | d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca | 2e-05 | |
| d1c4zd_ | 144 | d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H | 8e-05 | |
| d1uzxa_ | 152 | d.20.1.2 (A:) Vacuolar protein sorting-associated | 6e-04 |
| >d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: UBC-like superfamily: UBC-like family: UBC-related domain: Ubiquitin conjugating enzyme, UBC species: Caenorhabditis elegans, E2 2 [TaxId: 6239]
Score = 64.8 bits (157), Expect = 5e-13
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++Q+E L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 3 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 62
Query: 720 EPPV 723
+PP
Sbjct: 63 KPPK 66
|
| >d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154 | Back information, alignment and structure |
|---|
| >d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153 | Back information, alignment and structure |
|---|
| >d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148 | Back information, alignment and structure |
|---|
| >d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141 | Back information, alignment and structure |
|---|
| >d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150 | Back information, alignment and structure |
|---|
| >d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151 | Back information, alignment and structure |
|---|
| >d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152 | Back information, alignment and structure |
|---|
| >d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156 | Back information, alignment and structure |
|---|
| >d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149 | Back information, alignment and structure |
|---|
| >d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149 | Back information, alignment and structure |
|---|
| >d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109 | Back information, alignment and structure |
|---|
| >d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
| >d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157 | Back information, alignment and structure |
|---|
| >d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
| >d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
| >d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148 | Back information, alignment and structure |
|---|
| >d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146 | Back information, alignment and structure |
|---|
| >d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164 | Back information, alignment and structure |
|---|
| >d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149 | Back information, alignment and structure |
|---|
| >d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
| >d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154 | Back information, alignment and structure |
|---|
| >d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158 | Back information, alignment and structure |
|---|
| >d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157 | Back information, alignment and structure |
|---|
| >d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161 | Back information, alignment and structure |
|---|
| >d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136 | Back information, alignment and structure |
|---|
| >d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161 | Back information, alignment and structure |
|---|
| >d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144 | Back information, alignment and structure |
|---|
| >d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 727 | |||
| d1yh2a1 | 154 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.73 | |
| d2e2ca_ | 156 | Ubiquitin conjugating enzyme, UBC {Clam (Spisula s | 99.72 | |
| d2f4wa1 | 157 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.72 | |
| d1z2ua1 | 147 | Ubiquitin conjugating enzyme, UBC {Caenorhabditis | 99.72 | |
| d2ucza_ | 164 | Ubiquitin conjugating enzyme, UBC {Baker's yeast ( | 99.72 | |
| d2fo3a1 | 109 | Putative ubiquitin-conjugating enzyme, E2 domain { | 99.72 | |
| d1ayza_ | 153 | Ubiquitin conjugating enzyme, UBC {Baker's yeast ( | 99.71 | |
| d1zdna1 | 151 | Ubiquitin conjugating enzyme, UBC {Human(Homo sapi | 99.71 | |
| d1y6la_ | 148 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.7 | |
| d1z3da1 | 149 | Ubiquitin conjugating enzyme, UBC {Nematode (Caeno | 99.7 | |
| d1j7db_ | 149 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.69 | |
| d2a7la1 | 117 | Ubiquitin-protein ligase W (E2 W) {Human (Homo sap | 99.69 | |
| d2awfa1 | 125 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.68 | |
| d1jata_ | 152 | Ubiquitin conjugating enzyme, UBC {Baker's yeast ( | 99.68 | |
| d1i7ka_ | 146 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.68 | |
| d1yrva1 | 148 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.67 | |
| d2uyza1 | 156 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.67 | |
| d1fzya_ | 149 | Ubiquitin conjugating enzyme, UBC {Baker's yeast ( | 99.67 | |
| d2a4da1 | 139 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.64 | |
| d2bepa1 | 154 | Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain | 99.62 | |
| d1pzva_ | 161 | Ubiquitin conjugating enzyme, UBC {Nematode (Caeno | 99.62 | |
| d2f4za1 | 161 | Hypothetical protein Tgtwinscan_2721, E2 domain {T | 99.61 | |
| d1wzva1 | 150 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.6 | |
| d1c4zd_ | 144 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.59 | |
| d1jatb_ | 136 | Ubiquitin conjugating enzyme, UBC {Baker's yeast ( | 99.55 | |
| d2z5da1 | 152 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.51 | |
| d1y8xa1 | 157 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.45 | |
| d1yf9a1 | 158 | Ubiquitin conjugating enzyme, UBC {Leishmania majo | 99.43 | |
| d1zuoa1 | 162 | Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom | 99.42 | |
| d1s1qa_ | 141 | Tumor susceptibility gene 101 (TSG101) {Human (Hom | 98.45 | |
| d1uzxa_ | 152 | Vacuolar protein sorting-associated {Baker's yeast | 97.61 | |
| d2daya1 | 115 | E3 ubiquitin-protein ligase RNF25 {Human (Homo sap | 91.42 |
| >d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: UBC-like superfamily: UBC-like family: UBC-related domain: Ubiquitin conjugating enzyme, UBC species: Human (Homo sapiens), E2 T [TaxId: 9606]
Probab=99.73 E-value=5.3e-18 Score=160.97 Aligned_cols=69 Identities=30% Similarity=0.594 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCCceEEEEEEcCCCCCCCCcEEEEEEECCCCCCCCCCeeEeC
Q 004854 659 WVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPVSFRI 727 (727)
Q Consensus 659 ~~kRL~kEl~~L~~~~p~gI~v~~~ednl~~w~~~I~GP~~TPYegG~F~f~I~fP~~YP~~PP~V~Fl 727 (727)
+++||+||++.|++++|+||++.+.++|+++|+++|.||+||||+||+|+|.|.||++||++||+|+|+
T Consensus 3 ~~~Rl~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~ 71 (154)
T d1yh2a1 3 RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFL 71 (154)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred HHHHHHHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeecc
Confidence 578999999999999999999999999999999999999999999999999999999999999999995
|
| >d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} | Back information, alignment and structure |
|---|
| >d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} | Back information, alignment and structure |
|---|
| >d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} | Back information, alignment and structure |
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| >d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} | Back information, alignment and structure |
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| >d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} | Back information, alignment and structure |
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| >d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} | Back information, alignment and structure |
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| >d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} | Back information, alignment and structure |
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| >d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} | Back information, alignment and structure |
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| >d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} | Back information, alignment and structure |
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| >d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} | Back information, alignment and structure |
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| >d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} | Back information, alignment and structure |
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| >d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
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| >d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} | Back information, alignment and structure |
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| >d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} | Back information, alignment and structure |
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| >d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} | Back information, alignment and structure |
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| >d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
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| >d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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