Citrus Sinensis ID: 004860
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 727 | 2.2.26 [Sep-21-2011] | |||||||
| Q84P17 | 727 | Probable acyl-activating | yes | no | 0.995 | 0.995 | 0.701 | 0.0 | |
| F4KBF3 | 721 | Probable acyl-activating | no | no | 0.971 | 0.979 | 0.504 | 0.0 | |
| A1U2S9 | 649 | Acetyl-coenzyme A synthet | yes | no | 0.773 | 0.865 | 0.260 | 1e-41 | |
| Q88EH6 | 653 | Acetyl-coenzyme A synthet | yes | no | 0.779 | 0.868 | 0.261 | 2e-41 | |
| A8FUF1 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.788 | 0.881 | 0.259 | 8e-41 | |
| Q54Z60 | 674 | Acetyl-coenzyme A synthet | yes | no | 0.815 | 0.879 | 0.260 | 2e-40 | |
| A9KY56 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.790 | 0.884 | 0.25 | 4e-40 | |
| A6WM52 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.790 | 0.884 | 0.25 | 9e-40 | |
| A3D3E8 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.790 | 0.884 | 0.25 | 9e-40 | |
| A4Y7Y7 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.790 | 0.884 | 0.246 | 1e-39 |
| >sp|Q84P17|AEE18_ARATH Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana GN=AAE18 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/730 (70%), Positives = 605/730 (82%), Gaps = 6/730 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 477
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 478 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 537
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE GVPYPDDQPC GEVGLFP +LGA+DRLLNA+H+EVYF+GMPMYK LRRHGDI+KR
Sbjct: 538 DENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRHGDIVKR 597
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
TVGGY VQGRADDTMNLGGIKTSS+EIERVCDQADE I ETAA++++P GGPE+LVIF
Sbjct: 598 TVGGYYNVQGRADDTMNLGGIKTSSIEIERVCDQADECISETAAVTLTPPNGGPELLVIF 657
Query: 660 VVLKKGFTSQP-DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 718
VLK+GF Q ++LKM FS+ IQ LNPLFKVS VK+VPEFPRTAS+KLLRRVLRDQIK
Sbjct: 658 AVLKEGFKQQSGEELKMKFSRTIQKDLNPLFKVSFVKIVPEFPRTASSKLLRRVLRDQIK 717
Query: 719 HE-LSVRSRI 727
E LS+RSRI
Sbjct: 718 QELLSLRSRI 727
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May be involved in the peroxisomal activation of 2,4-dichlorophenoxybutyric acid (2,4-DB), a precursor of active auxins that inhibit root growth. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|F4KBF3|AAE17_ARATH Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana GN=AAE17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/722 (50%), Positives = 477/722 (66%), Gaps = 16/722 (2%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K++ + D+ +G+ + +E+ + L+ +I S E W + ++R++L P P
Sbjct: 4 KSLNSITKSDIEALGISGDVSEKLLRDLEDIIHGSS--TPPETWIQ-ISRRILHPNLPFS 60
Query: 63 LHQLVYYSVYNDWDASIKGPPL-YWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSF 121
HQ++YY Y D+ GP L W P + LTN+G LE G + LG YK+P++SF
Sbjct: 61 FHQMMYYGCYKDF-----GPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSF 115
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDR-TDKSKHGGTWLPGSVLNIAECCL 180
FQ+F+V +PE YW+ L E++++F PKCIL++ T GG WLPG+ LN A CL
Sbjct: 116 SSFQEFSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDNPGGKWLPGAYLNPARNCL 175
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
RR +D + I WR++ D+ VN MT ELR QV L A+AL + + AIA+D
Sbjct: 176 TNGFKRRLDD--IVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVD 233
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V +VIIYLAI+LAG+VVVSIADSF+ REI+TRL++SKAK IFTQD I+RG + PL
Sbjct: 234 MPMNVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPL 293
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
Y +V+ A AIV+PA G+ + LRE+DLSW +FL + + R Y P A
Sbjct: 294 YRRVVDAEAPLAIVVPARGSSCRMKLREKDLSWNNFLGNA-RNLRGVEYVAAEKPAGAYT 352
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWT +S ++ A+ W H+D++ GDV WPTNLGW+MGP ++++S
Sbjct: 353 NILFSSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYASL 412
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
+NGA + LY GSPL +F KFVQDA V+VLG +PS+V+ W+N+N G DW++IR F ST
Sbjct: 413 INGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGST 472
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SN+D+ LWL +A Y +IE CGGTE+ ++I GSLLQPQ+ AFSTA M L IL
Sbjct: 473 GEASNIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFIL 532
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE P P VGE+ L P GAS LLN +H +VYF+GMP ++G LRRHGD+ +R
Sbjct: 533 DEDSNPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFER 592
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
T GY GRADDTMNLGGIK S+EIERVC+ D+S+LETAAI V P GGPE LVI
Sbjct: 593 TSKGYYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPEQLVIA 652
Query: 660 VVLKKGFTSQPD--KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI 717
VV K S PD LK F+ IQ KLNPLFKVS V +P PRTA+NK++RRVLR Q+
Sbjct: 653 VVFKSPEFSNPDLNLLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRRVLRQQL 712
Query: 718 KH 719
Sbjct: 713 TQ 714
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|A1U2S9|ACSA_MARAV Acetyl-coenzyme A synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 164/630 (26%), Positives = 270/630 (42%), Gaps = 68/630 (10%)
Query: 119 TSFRLFQKFTVEHPEAYWEIALKEISVV--FREAPKCILDRTDKSKHGGTWLPGSVLNIA 176
+ + + +VE P +W K I + F + D + S W VLN +
Sbjct: 22 SQYEEMYRQSVEDPNTFWGEHGKRIDWIKPFTKVKNSTYDYNNLSIK---WFEDGVLNAS 78
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDA 235
CL H + + AI++ D D S +TY+EL E+ AN L D KGD
Sbjct: 79 ANCL--DRHLEQRGDQTAIIFEGD--DPSVSRNVTYRELYEETCKFANVLKDQGVKKGDV 134
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+ I MPM V + LA G + + F+ +A R+ K++ + T D LRGGR
Sbjct: 135 VTIYMPMIVETAVAMLACARIGAIHSVVFGGFSPEALAARIVNGKSRFVITADEGLRGGR 194
Query: 296 KFPLYSKVLGAAPL-------KAIVLPAIGNDVGIPLRE-QDLSWKDFL--SSVDYHPRP 345
PL V A K IV+ GND +P E +DL ++D + +S + P P
Sbjct: 195 AIPLKKNVDSALKHEDDAKVDKVIVVSRTGNDQ-VPWTEGRDLRYEDLMKNASAECQPEP 253
Query: 346 -NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWP 403
N P++ +L++SG+TG PK + T + + ++ D GDVY
Sbjct: 254 MNAEDPLF--------MLYTSGSTGAPKGVLHTTGGYMVYASMTHQYVFDYHDGDVYWCT 305
Query: 404 TNLGWVMG-PVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAW 459
+ GWV G IL+ NGA L++G P G+ V V +L T P+ ++A
Sbjct: 306 ADFGWVTGHSYILYGPLANGAITLLFEGVPNYPDSSRMGQVVDKHKVNILYTAPTAIRAL 365
Query: 460 --RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS 517
+ +C++G ++ S GE ++ + W WY+ +I + S I +
Sbjct: 366 MAQGESCMDGTTRGSLKLLGSVGEP--INPEAW----EWYHRVIGN------SKCPIVDT 413
Query: 518 LLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV-------------GEVGLFPLYLG 564
Q + G + A + +P+ QP + G + + + G
Sbjct: 414 WWQTETGGILISPLPGAVDLKPGSATLPFFGVQPALVDNEGNILEGKTEGNLVILDSWPG 473
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
R + DHE YKGM GD +R GY + GR DD +N+ G + +
Sbjct: 474 QM-RTIYGDHERFVQTYFSTYKGMYFT--GDGARRDEDGYYWITGRVDDVLNVSGHRLGT 530
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
E+E D+ + AA+ P + + ++V L +G D+LK + ++ +
Sbjct: 531 AEVESALVAHDK--VAEAAVVGYPHDIKGQGIYVYVTLVQG-EEPSDELKKELVQWVRKE 587
Query: 685 LNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714
+ P+ +++ P P+T S K++RR+LR
Sbjct: 588 IGPIASPDVIQWAPGLPKTRSGKIMRRILR 617
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Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q88EH6|ACSA1_PSEPK Acetyl-coenzyme A synthetase 1 OS=Pseudomonas putida (strain KT2440) GN=acsA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 169/647 (26%), Positives = 282/647 (43%), Gaps = 80/647 (12%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGG- 165
P++ D T ++Q+ +V +P+ +W + I + P + +T H
Sbjct: 11 PEVAATTLTDEATYKAMYQQ-SVINPDGFWREQAQRIDWI---KPFTKVKQTSFDDHHVD 66
Query: 166 -TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224
W LN++ CL H + + +AI+W D D S +TY+EL EQV AN
Sbjct: 67 IKWFADGTLNVSSNCL--DRHLEERGDQLAIIWEGD--DPSEHRNITYRELHEQVCKFAN 122
Query: 225 ALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKG 283
AL +GD + I MPM AV+ LA G + + F+ +A R+ K+K
Sbjct: 123 ALRGQDVHRGDVVTIYMPMIPEAVVAMLACARIGAIHSVVFGGFSPEALAGRIIDCKSKV 182
Query: 284 IFTQDFILRGGRKFPLYSKV-------LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL 336
+ T D +RGGR+ PL + V ++ K IV G D+ + +D+ ++D +
Sbjct: 183 VITADEGVRGGRRTPLKANVDLALTNPETSSVQKIIVCKRTGGDIAW-HQHRDIWYEDLM 241
Query: 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLK 395
H P + + IL++SG+TG+PK + T + A + D +
Sbjct: 242 KVASSHCAPKEMG-----AEEALFILYTSGSTGKPKGVLHTTGGYLVYAALTHERVFDYR 296
Query: 396 VGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP----LERSFGKFVQDAGVTVLG 450
G+VY ++GWV G I++ NGAT L++G P + R K V V +L
Sbjct: 297 PGEVYWCTADVGWVTGHSYIVYGPLANGATTLLFEGVPNYPDITR-VSKIVDKHKVNILY 355
Query: 451 TVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESC-- 504
T P+ ++A +EG D + +R S GE ++ + W WY + E C
Sbjct: 356 TAPTAIRAMMAEGQAAVEGADGSSLRLLGSVGEP--INPEAW----NWYYKTVGKERCPI 409
Query: 505 ---------GGTELS-----SAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQ 550
GG +S + GS +P FG G +I D
Sbjct: 410 VDTWWQTETGGILISPLPGATGLKPGSATRP-FFGVVPALVDNLGNLI----------DG 458
Query: 551 PCVGEVGLFPLYLGASDRLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 607
G + + + G S R L DH+ + YF+ ++GM GD +R GY +
Sbjct: 459 AAEGNLVILDSWPGQS-RSLYGDHDRFVDTYFK---TFRGMYFT--GDGARRDEDGYYWI 512
Query: 608 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 667
GR DD +N+ G + + EIE A + E A + V P + + ++V L G
Sbjct: 513 TGRVDDVLNVSGHRMGTAEIESAM-VAHSKVAEAAVVGV-PHDIKGQGIYVYVTLNAGIE 570
Query: 668 SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714
+ ++L++ ++ ++ P+ +++ P P+T S K++RR+LR
Sbjct: 571 AS-EQLRLELKNWVRKEIGPIASPDVIQWAPGLPKTRSGKIMRRILR 616
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Pseudomonas putida (strain KT2440) (taxid: 160488) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A8FUF1|ACSA_SHESH Acetyl-coenzyme A synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 163/627 (25%), Positives = 272/627 (43%), Gaps = 54/627 (8%)
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAECC 179
+++Q+ ++ +PE +W + I + P + +T H + W LN + C
Sbjct: 26 KMYQE-SIVNPEGFWREHGQRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASANC 81
Query: 180 LLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238
L H K+ + VAI+W D D +TY EL V ANAL + +GD + +
Sbjct: 82 L--DRHLEKDSDKVAIIWEGD--DAKDQRTITYGELHSDVCKFANALRSQGVRRGDIVTV 137
Query: 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP 298
MPM A ++ LA G V + F+ IA+R+ K+K I T D +RGGR P
Sbjct: 138 YMPMVPEAAVVMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITADEGVRGGRIIP 197
Query: 299 LYSKVLGAAPL-------KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
L + + A K IVL G DV + +D+ W+ + + H P
Sbjct: 198 LKANIDEALSHPDVDCVEKVIVLERTGGDVNW-VEGRDIKWESLMDTASEHCIPEEMG-- 254
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVM 410
+ + +L++SG+TG PK + T + A ++ D K G+VY ++GW+
Sbjct: 255 ---AEDPLFLLYTSGSTGNPKGVLHTTGGYMVYAAMTHEYVFDYKDGEVYWCTADVGWIT 311
Query: 411 G-PVILFSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAW--RNTNC 464
G +++ NGAT+ +++G P G+ V V +L T P+L++A
Sbjct: 312 GHSYMVYGPLANGATVLIHEGVPNYPTPARLGEMVDRHKVNILYTAPTLIRALMAEGKEQ 371
Query: 465 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQPQ 522
D + +R S GE ++ + W WYN +I E C + G +L
Sbjct: 372 FADFDGSSLRIMGSVGEP--INPEAW----RWYNEVIGHEHCPIVDTWWQTETGGILISP 425
Query: 523 AFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE 575
GA T +A ++D G D G + + + G R + DH+
Sbjct: 426 LPGATDTKPGSATRPFFGVQPALVDNMGNII--DGATEGNLVILDSWPGQM-RTVFGDHD 482
Query: 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635
++GM GD KR GY + GR DD +N+ G + + E+E A
Sbjct: 483 RFALTYFKTFRGMYFT--GDGAKRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL-VAH 539
Query: 636 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK 695
E + E A + P + + +V L KG T + ++L+ K ++ ++ L L++
Sbjct: 540 EHVAEAAVVGY-PHDIKGQGIYAYVTLTKG-TIETEELRQELRKWVRKEIGALATPDLIQ 597
Query: 696 VVPEFPRTASNKLLRRVLRDQIKHELS 722
P+T S K++RR LR +E++
Sbjct: 598 WAGGLPKTRSGKIMRRFLRKIAANEVT 624
|
Shewanella sediminis (strain HAW-EB3) (taxid: 425104) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q54Z60|ACSA_DICDI Acetyl-coenzyme A synthetase OS=Dictyostelium discoideum GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 168/646 (26%), Positives = 285/646 (44%), Gaps = 53/646 (8%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT 166
P + + + + K ++E P +W+ KE F + + K +
Sbjct: 21 PSFSTKCHISSVEQYNEMYKESIESPNQFWDKKAKEFLTWFSDY--TTVQHGSFEKGDIS 78
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W +N++ C+ H ++ + VAI++ D +E+ V +TY+E+ E+V ++N L
Sbjct: 79 WFLNGKINVSYNCI--DRHLKENADKVAILFEGD--EETMVKKVTYREMFEEVCRLSNLL 134
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
++ KGD +AI +P T A+ LA G + I F I +R+ +K + I
Sbjct: 135 ISLGVGKGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFAGFGYESIVSRVHDAKCRVII 194
Query: 286 TQDFILRGGRKFPLYSK---VLGAAPLKAIVLPAIGNDVGIPLREQDLS---WKDFLSSV 339
T D LRGGR PL K V+ L VL + + G P + S W D + +
Sbjct: 195 TADEGLRGGRYIPLKEKIDQVVQHCKLVQHVL--VFKNTGRPTITFNPSIDIWAD-EAML 251
Query: 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGD 398
D+ P Y PV+ + + IL++SG+TG PK + TQ + A ++ D D
Sbjct: 252 DHRP---YCPPVWLDSEDPLFILYTSGSTGTPKGLVHTQAGYLLYAAMTHRYVFDYHDSD 308
Query: 399 VYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPS 454
VY ++GW+ G I++ NGAT +++G+PL + ++ VQ +T T P+
Sbjct: 309 VYACMADVGWITGHSYIVYGPLANGATTFIFEGTPLYPTPARYWEMVQRHKITQFYTAPT 368
Query: 455 LVKAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELS 510
+++ + + D + +R S GE N + W ++ AI+++ TE
Sbjct: 369 AIRSLMKFPISFTQQSDKSSLRVLGSVGEPINPEAWRWFNTNVGEGRCAIVDTYWQTESG 428
Query: 511 SAYIQGSLLQPQAFGAFSTATMTAG-------LVILD----ECGVPYPDDQPCVGEVGLF 559
G L+ P G ST +A L +LD E PD C G+
Sbjct: 429 -----GHLITPLP-GVTSTKPGSATKPFFGIELQVLDSKTGERLYINPDINGCKEISGVL 482
Query: 560 PL---YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN 616
+ + G + R + H M YKG GD +K GY ++GR DD +N
Sbjct: 483 AISKPWPGIA-RSVYRSHGRYLQTYMTQYKGHYFT--GDGVKLDSDGYYWIEGRVDDVIN 539
Query: 617 LGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI 676
+ G + + E+E SI AA+ P + ++ F LK+G+ + M+
Sbjct: 540 VSGHRLGTAELESAL--VGCSICAEAAVVGYPHDIKGQGILAFCTLKEGYQEDESNVIMM 597
Query: 677 FSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722
K +++ + P ++ + P P+T S K++RR+LR HE S
Sbjct: 598 LKKEVRNVIGPFATPDVIVITPSLPKTRSGKIMRRILRKIGCHESS 643
|
Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A9KY56|ACSA_SHEB9 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS195) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 157/628 (25%), Positives = 270/628 (42%), Gaps = 53/628 (8%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL +V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHAEVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + ++D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGIVDW-VEDRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634
E ++GM GD +R GY + GR DD +N+ G + + E+E
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL--V 537
Query: 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV 694
++ AA+ P + + +V L +G T + ++L+ + ++ ++ L L+
Sbjct: 538 SHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEETEELRQELRQWVRKEIGALATPDLI 596
Query: 695 KVVPEFPRTASNKLLRRVLRDQIKHELS 722
+ P+T S K++RR LR +E++
Sbjct: 597 QWATGLPKTRSGKIMRRFLRKIAANEVT 624
|
Shewanella baltica (strain OS195) (taxid: 399599) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A6WM52|ACSA_SHEB8 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS185) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 157/628 (25%), Positives = 268/628 (42%), Gaps = 53/628 (8%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + +D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGKVDW-VEGRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634
E ++GM GD +R GY + GR DD +N+ G + + E+E
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL--V 537
Query: 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV 694
++ AA+ P + + +V L +G T + ++L+ + ++ ++ L L+
Sbjct: 538 SHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEETEELRQELRQWVRKEIGALATPDLI 596
Query: 695 KVVPEFPRTASNKLLRRVLRDQIKHELS 722
+ P+T S K++RR LR +E++
Sbjct: 597 QWATGLPKTRSGKIMRRFLRKIAANEVT 624
|
Shewanella baltica (strain OS185) (taxid: 402882) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A3D3E8|ACSA_SHEB5 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 157/628 (25%), Positives = 268/628 (42%), Gaps = 53/628 (8%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + +D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGKVDW-VEGRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634
E ++GM GD +R GY + GR DD +N+ G + + E+E
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL--V 537
Query: 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV 694
++ AA+ P + + +V L +G T + ++L+ + ++ ++ L L+
Sbjct: 538 SHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEETEELRQELRQWVRKEIGALATPDLI 596
Query: 695 KVVPEFPRTASNKLLRRVLRDQIKHELS 722
+ P+T S K++RR LR +E++
Sbjct: 597 QWATGLPKTRSGKIMRRFLRKIAANEVT 624
|
Shewanella baltica (strain OS155 / ATCC BAA-1091) (taxid: 325240) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A4Y7Y7|ACSA_SHEPC Acetyl-coenzyme A synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 155/628 (24%), Positives = 268/628 (42%), Gaps = 53/628 (8%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 81 CL--DRHLSEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K + T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVVITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A + K IVL G + + +D+ W L + H +P
Sbjct: 197 PLKRNIDDALNHPDVTSVEKVIVLKRTGGKIDW-VEGRDVWWHSLLETASEHCQPEEMG- 254
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+ + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 255 ----AEDPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V +L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVNILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDQFDGSTLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634
E ++GM GD +R GY + GR DD +N+ G + + E+E
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL--V 537
Query: 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV 694
++ AA+ P + + +V L +G T + ++L+ + ++ ++ L L+
Sbjct: 538 SHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEESEELRQELRQWVRKEIGALATPDLI 596
Query: 695 KVVPEFPRTASNKLLRRVLRDQIKHELS 722
+ P+T S K++RR LR +E++
Sbjct: 597 QWASGLPKTRSGKIMRRFLRKIAANEVT 624
|
Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) (taxid: 319224) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 727 | ||||||
| 225435726 | 727 | PREDICTED: acetyl-coenzyme A synthetase | 1.0 | 1.0 | 0.757 | 0.0 | |
| 380042388 | 727 | acyl-activating enzyme 14 [Cannabis sati | 0.994 | 0.994 | 0.760 | 0.0 | |
| 380042368 | 723 | acyl-activating enzyme 4, partial [Canna | 0.993 | 0.998 | 0.736 | 0.0 | |
| 380042386 | 715 | acyl-activating enzyme 13 [Cannabis sati | 0.979 | 0.995 | 0.72 | 0.0 | |
| 297746452 | 685 | unnamed protein product [Vitis vinifera] | 0.942 | 1.0 | 0.708 | 0.0 | |
| 449503439 | 725 | PREDICTED: probable acyl-activating enzy | 0.997 | 1.0 | 0.694 | 0.0 | |
| 449448834 | 725 | PREDICTED: probable acyl-activating enzy | 0.997 | 1.0 | 0.694 | 0.0 | |
| 449503441 | 725 | PREDICTED: probable acyl-activating enzy | 0.997 | 1.0 | 0.685 | 0.0 | |
| 449448832 | 725 | PREDICTED: probable acyl-activating enzy | 0.997 | 1.0 | 0.683 | 0.0 | |
| 356525251 | 728 | PREDICTED: acetyl-coenzyme A synthetase- | 0.997 | 0.995 | 0.708 | 0.0 |
| >gi|225435726|ref|XP_002285701.1| PREDICTED: acetyl-coenzyme A synthetase [Vitis vinifera] gi|297746451|emb|CBI16507.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1176 bits (3041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/727 (75%), Positives = 638/727 (87%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MG + EVGV +L+K GL +EEA+EF++ILK + ++G D E+WRE+VAR+VL P HP
Sbjct: 1 MGMRVAEVGVGELVKAGLSMEEAQEFERILKAAVGGARGSDPSEVWREVVARRVLSPSHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
HGLH+LV++SVY +WD SI+GPPLYWFPSL +S TNLG +E +GP+LLG +YKDPITS
Sbjct: 61 HGLHRLVFHSVYAEWDESIRGPPLYWFPSLYESMHTNLGRLMETYGPRLLGLSYKDPITS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
+ LFQKF+V++ E YW + LKE+SV+F AP+CILD TDKSKHGGTWLPG+VLNIAECCL
Sbjct: 121 YSLFQKFSVQNLEVYWSMVLKELSVLFHRAPRCILDTTDKSKHGGTWLPGAVLNIAECCL 180
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LP ++ RK DN++A+VWR++ D+S VN +T KELREQVM+VAN LD FSKGDAIAIDM
Sbjct: 181 LPVSYPRKHDNSLAVVWRDEGNDDSPVNRLTLKELREQVMMVANVLDATFSKGDAIAIDM 240
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAI+LAG+VVVSIADSFAA+EIATRL VSKAKGIFTQDFI+RGGRKFPLY
Sbjct: 241 PMTVHAVIIYLAIVLAGFVVVSIADSFAAKEIATRLHVSKAKGIFTQDFIVRGGRKFPLY 300
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ AAP K IVLPAIG DV + LREQDLSWKDFLS D+ PRPN YSPVY P+DAV N
Sbjct: 301 SRVVEAAPHKVIVLPAIGTDVDVQLREQDLSWKDFLSHADHLPRPNNYSPVYQPIDAVTN 360
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTG+PKAIPWTQ+S IR +A+ WA I+++VGDV+CWPTNLGWVMGP IL++SFL
Sbjct: 361 ILFSSGTTGDPKAIPWTQVSPIRSSADAWAQINIQVGDVFCWPTNLGWVMGPTILYASFL 420
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GA LALY GSPL+R FGKFVQDAGVTVLGTVPSLVK W+NT C+EGLDWTKI+SFASTG
Sbjct: 421 TGAALALYHGSPLDRGFGKFVQDAGVTVLGTVPSLVKTWKNTGCMEGLDWTKIKSFASTG 480
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+A+Y IIE CGGTEL+S+YIQGS+LQPQAFG FSTA MT G VILD
Sbjct: 481 ETSNVDDDLWLSSRAYYKPIIECCGGTELASSYIQGSVLQPQAFGTFSTAAMTTGFVILD 540
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E GVPYPDDQPCVGEVGLFPL +GA+D LLNADHEEVYF+GMPMYKGM LRRHGDIIKRT
Sbjct: 541 ENGVPYPDDQPCVGEVGLFPLIMGATDWLLNADHEEVYFKGMPMYKGMHLRRHGDIIKRT 600
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY +VQGRADDTMNLGGIKTSSVEIERVCD+ADES+LE+AAIS +P GGPE+LV+FV
Sbjct: 601 VGGYFVVQGRADDTMNLGGIKTSSVEIERVCDKADESVLESAAISTAPLNGGPELLVVFV 660
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720
VLKKG+ +P++LKM FSKAIQ LNPLFKV+ VK+VPEFPRTASNK+LRRVLRDQIKHE
Sbjct: 661 VLKKGYDCEPNELKMKFSKAIQRNLNPLFKVNFVKIVPEFPRTASNKILRRVLRDQIKHE 720
Query: 721 LSVRSRI 727
LSVRSRI
Sbjct: 721 LSVRSRI 727
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042388|gb|AFD33358.1| acyl-activating enzyme 14 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1159 bits (2998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/726 (76%), Positives = 626/726 (86%), Gaps = 3/726 (0%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K+I EVGVEDL++ GL EEA F ++LK +SC+KG D E+WR LVAR+VLKPWHPHG
Sbjct: 4 KSISEVGVEDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRVLKPWHPHG 63
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
LHQLVYYSVY WD S KGPP YWFPSL +SK TN+G +E HG LLG YKDPITS+
Sbjct: 64 LHQLVYYSVYAHWDVSSKGPPPYWFPSLYESKHTNMGGIMEKHGSSLLGPLYKDPITSYS 123
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTD-KSKHGGTWLPGSVLNIAECCLL 181
LFQKF+ +HPEAYW I LKE+SV F+E PKCILDR+D KSKHGG+WLPGSVLNIAECCLL
Sbjct: 124 LFQKFSAQHPEAYWSIVLKELSVSFQEEPKCILDRSDLKSKHGGSWLPGSVLNIAECCLL 183
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP 241
P+ + RK+D+++AIVWR++ CD+S +N++T K+LREQV+ VA ALD MFSKGDAIAIDMP
Sbjct: 184 PTAYPRKDDDSLAIVWRDEGCDDSGINIITLKQLREQVISVAKALDAMFSKGDAIAIDMP 243
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
MT AVIIYLAIIL+G VVVSIADSFA +EI+ RLRVS+AK IFTQDFILRG RKFPLYS
Sbjct: 244 MTANAVIIYLAIILSGLVVVSIADSFAPKEISIRLRVSQAKAIFTQDFILRGSRKFPLYS 303
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+V+ AAP K IVLPAIG++VGI LREQD+SW DFLSSV R YSP Y PVD ++NI
Sbjct: 304 RVVEAAPDKVIVLPAIGSNVGIQLREQDMSWGDFLSSVG--TRSRNYSPCYQPVDTLINI 361
Query: 362 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
LFSSGTTGEPKAIPWTQLS IRC AE WAH+D++VGDV+CWPTNLGWVMGP+++FSSFL+
Sbjct: 362 LFSSGTTGEPKAIPWTQLSPIRCAAESWAHMDMQVGDVFCWPTNLGWVMGPILIFSSFLS 421
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GATLALY GSPL FGKFVQDAGVT LGTVPSLVKAW+NT C+ GLDWTKI+ FASTGE
Sbjct: 422 GATLALYHGSPLGYGFGKFVQDAGVTKLGTVPSLVKAWKNTQCMNGLDWTKIKCFASTGE 481
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE 541
TSNVDDDLWLSS+A+Y +IE CGGTELSS+YIQGSLLQPQAFGAFST +MT LVILDE
Sbjct: 482 TSNVDDDLWLSSRAYYKPVIECCGGTELSSSYIQGSLLQPQAFGAFSTTSMTTSLVILDE 541
Query: 542 CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601
G P+PDDQ C+GEVGLFPLYLGA+DRLLNADHEEVYF+GMP+YKGM LRRHGDIIKRTV
Sbjct: 542 HGNPFPDDQACIGEVGLFPLYLGATDRLLNADHEEVYFKGMPLYKGMRLRRHGDIIKRTV 601
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 661
GGY IVQGRADDTMNLGGIKTSSVEIERVCD+ADESI+ETAA+SVSP GGPE LV+FVV
Sbjct: 602 GGYFIVQGRADDTMNLGGIKTSSVEIERVCDRADESIVETAAVSVSPVDGGPEQLVMFVV 661
Query: 662 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721
LK G+ S+ + L+ FSKAIQS LNPLFKV VK+VPEFPRTASNKLLRRVLRDQIKHEL
Sbjct: 662 LKNGYNSEAENLRTKFSKAIQSNLNPLFKVRFVKIVPEFPRTASNKLLRRVLRDQIKHEL 721
Query: 722 SVRSRI 727
S SRI
Sbjct: 722 SAHSRI 727
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042368|gb|AFD33348.1| acyl-activating enzyme 4, partial [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1115 bits (2885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/726 (73%), Positives = 610/726 (84%), Gaps = 4/726 (0%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
+I EVGVEDL++ GL EEA F ++LK +SC+KG D E+WR LVAR+ LKPWHPHG
Sbjct: 1 NSISEVGVEDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRALKPWHPHG 60
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
LHQLVYYSVY WD S KGPP YWFPSL +SK TN+G +E HG LLG YKDPITS+
Sbjct: 61 LHQLVYYSVYAHWDVSSKGPPPYWFPSLYESKHTNMGGIMEKHGSSLLGPLYKDPITSYS 120
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTD-KSKHGGTWLPGSVLNIAECCLL 181
LFQKF+ +HPEAYW I LKE+SV F+E PKCILDR+D KSKHGG+WLPGSVLN+AECCLL
Sbjct: 121 LFQKFSAQHPEAYWSIVLKELSVSFQEEPKCILDRSDLKSKHGGSWLPGSVLNVAECCLL 180
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP 241
P+ + RK+D+++AIVWR++ CD+S +N++T K+LREQV+ VA ALD MFSKGDAIAIDMP
Sbjct: 181 PTAYPRKDDDSLAIVWRDEGCDDSGINIITLKQLREQVISVAKALDAMFSKGDAIAIDMP 240
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
MT AVIIYLAIIL+G VVVSIADSFA +EI+ RLRVS+AK IFTQDFILRG RKFPLYS
Sbjct: 241 MTANAVIIYLAIILSGLVVVSIADSFAPKEISIRLRVSQAKAIFTQDFILRGSRKFPLYS 300
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+V+ AAP K IVLPAIG++VGI LREQD+SW DFLSSV R YSP Y PVD ++NI
Sbjct: 301 RVVEAAPDKVIVLPAIGSNVGIQLREQDMSWGDFLSSVG--TRSRNYSPCYQPVDTLINI 358
Query: 362 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
LFSSGTTGEPKAIPWTQLS IRC AE WAH+D++VGDV+CWPTNLGWVMGP+++FSSFL+
Sbjct: 359 LFSSGTTGEPKAIPWTQLSPIRCAAESWAHMDMQVGDVFCWPTNLGWVMGPILIFSSFLS 418
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GATLALY GSPL FGKFVQDAGVT LGTVPSLVKAW+NT C+ GLDWTKI+ FASTGE
Sbjct: 419 GATLALYHGSPLGYGFGKFVQDAGVTKLGTVPSLVKAWKNTQCMNGLDWTKIKCFASTGE 478
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE 541
TSNVDDDLWLSS+A+Y +IE CGGTELSS+YIQGSLLQPQAFGAFST +MT LVILDE
Sbjct: 479 TSNVDDDLWLSSRAYYKPVIECCGGTELSSSYIQGSLLQPQAFGAFSTTSMTTSLVILDE 538
Query: 542 CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601
G P+PDDQ C+GEVGLFPLYLGA+DRLLNADHEEVYF+ Y C +RTV
Sbjct: 539 HGNPFPDDQACIGEVGLFPLYLGATDRLLNADHEEVYFKEC-HYTKECASETWRYYQRTV 597
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 661
GGY IVQGRADDTMNLGGIKTSSVEIERVCD+ADESI+ETAA+SVSP GGPE LV+FVV
Sbjct: 598 GGYFIVQGRADDTMNLGGIKTSSVEIERVCDRADESIVETAAVSVSPVDGGPEQLVMFVV 657
Query: 662 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721
LK G+ S+ + L+ FSKAIQS LNPLFKV VK+VPEFPRTASNKLLRRVLRDQIKHEL
Sbjct: 658 LKNGYNSEAENLRTKFSKAIQSNLNPLFKVRFVKIVPEFPRTASNKLLRRVLRDQIKHEL 717
Query: 722 SVRSRI 727
S SRI
Sbjct: 718 SAHSRI 723
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042386|gb|AFD33357.1| acyl-activating enzyme 13 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1091 bits (2822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/725 (72%), Positives = 608/725 (83%), Gaps = 13/725 (1%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K+I EVGV+DL++ GL EEA F ++LK +SC+KG D E+WR LVAR+VLKPW
Sbjct: 4 KSISEVGVDDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRVLKPW---- 59
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
SVY WD S KGPP YWFPSL SK TNLG +E HGP LLG YKDPITS+
Sbjct: 60 -------SVYAHWDVSSKGPPPYWFPSLYHSKDTNLGRLMEKHGPSLLGPLYKDPITSYS 112
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLP 182
LFQKF+VEHPE YW IALKE+SV F+E PKCILD++DKSKHGG+WLPG+VLNIAECCLLP
Sbjct: 113 LFQKFSVEHPEVYWSIALKELSVSFQEEPKCILDKSDKSKHGGSWLPGAVLNIAECCLLP 172
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPM 242
+++ RK+D+++AIVWR++ D+S+VNL+T K+LREQV+ VA +LD MFSKGDAIA+DMPM
Sbjct: 173 TSYPRKDDDSLAIVWRDEGSDDSSVNLITLKQLREQVISVAKSLDAMFSKGDAIAMDMPM 232
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
T AVIIYLAIIL+G VVVSIADSFA +EIA+RL VS+AK IFTQDFILRGGRKFPLYS+
Sbjct: 233 TANAVIIYLAIILSGLVVVSIADSFAPKEIASRLHVSQAKAIFTQDFILRGGRKFPLYSR 292
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
V+ AAP + IVLPA G+++GI LREQD+SW DFLSSV R YSP Y PVD+++NIL
Sbjct: 293 VVEAAPDRVIVLPATGSNIGIQLREQDMSWGDFLSSVGTRSRK--YSPCYQPVDSLINIL 350
Query: 363 FSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422
FSSGTTGEPKAIPWT LS IRC+++ WA++D+KVGDV CWPTNLGW +GP ILF+ FL+G
Sbjct: 351 FSSGTTGEPKAIPWTHLSPIRCSSDFWAYMDIKVGDVVCWPTNLGWALGPFILFTCFLSG 410
Query: 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482
A LALY GSPL R FGKFVQDA VT LGTVPSLVK W+NT C++GLDWTKI+SFASTGET
Sbjct: 411 AVLALYHGSPLGRGFGKFVQDASVTKLGTVPSLVKTWKNTQCMKGLDWTKIKSFASTGET 470
Query: 483 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC 542
SNVDDDLWLSS+A+Y +IE CGGTEL+S+YIQGSLLQPQAFGAF+TATMT VI+DE
Sbjct: 471 SNVDDDLWLSSQAYYKPVIECCGGTELASSYIQGSLLQPQAFGAFNTATMTTSFVIIDEH 530
Query: 543 GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 602
G PYPDDQ C GEVGL PLYLGASDRLLNADHEEVYF+GMP+YKGM LRRHGDII RTVG
Sbjct: 531 GNPYPDDQACTGEVGLIPLYLGASDRLLNADHEEVYFKGMPLYKGMRLRRHGDIINRTVG 590
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
GY IVQGRADDTMNLGGIKTSS EIE VCD+AD+SILETAA+SVSP GGGPE LV+FVVL
Sbjct: 591 GYFIVQGRADDTMNLGGIKTSSFEIEHVCDRADDSILETAAVSVSPIGGGPEQLVMFVVL 650
Query: 663 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722
K G+ ++ + L+ FSKAIQS LNPLFKV+ VK+V EFPRT SNKLLRRVLRDQ+ E S
Sbjct: 651 KNGYDAEAENLRTKFSKAIQSNLNPLFKVTAVKIVHEFPRTMSNKLLRRVLRDQLNREFS 710
Query: 723 VRSRI 727
++S+I
Sbjct: 711 IQSKI 715
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746452|emb|CBI16508.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1075 bits (2780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/727 (70%), Positives = 594/727 (81%), Gaps = 42/727 (5%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MG + EVGV +L+K GL +EEA+EF +ILK + ++G D E+W E+VAR+VL P HP
Sbjct: 1 MGMRVAEVGVGELVKAGLSMEEAQEFKRILKAAVGGARGSDPSEVWCEVVARRVLSPSHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
HGLHQLV++SVY +WD S +GPPLYWFPSL +SK TNLG +E +GP+LLG +YKDPITS
Sbjct: 61 HGLHQLVFHSVYAEWDESTRGPPLYWFPSLYESKHTNLGRLMETYGPRLLGLSYKDPITS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
LFQKF+V++PE YW + LKE+S
Sbjct: 121 HSLFQKFSVQNPEVYWSMVLKELS------------------------------------ 144
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+K DN++A+VWR+ D+S VN MT KELREQVMLVANALD F+KGDAIAIDM
Sbjct: 145 ------KKHDNSLAVVWRDKGNDDSPVNQMTLKELREQVMLVANALDATFTKGDAIAIDM 198
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAI+LAG+VVVSIADSFAA+EI TRLRVSKAKGIFTQDFI+R GRKFPLY
Sbjct: 199 PMTVYAVIIYLAIVLAGFVVVSIADSFAAKEITTRLRVSKAKGIFTQDFIVRRGRKFPLY 258
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ AAP K I+LPAIG DV + LREQDLSWKDFLS D+ PRPNYYSPVY P+DAV N
Sbjct: 259 SRVVEAAPHKVILLPAIGKDVNVQLREQDLSWKDFLSRADHLPRPNYYSPVYQPIDAVTN 318
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTG+PKAIPWTQ+S IR A+ WA +++VGDV CWPTNLGW+MGP I+++SFL
Sbjct: 319 ILFSSGTTGDPKAIPWTQVSPIRSAADAWAQSNIQVGDVLCWPTNLGWMMGPFIIYASFL 378
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GA LALY GSPL+R FGKFVQDAGVT+LGTVPSLVK W+NT C+EGLDWTKI+SFASTG
Sbjct: 379 TGAALALYHGSPLDRGFGKFVQDAGVTILGTVPSLVKTWKNTGCMEGLDWTKIKSFASTG 438
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+A Y IIE CGGTEL+S+YIQGS+ QPQAFGAFS+ MT G VILD
Sbjct: 439 ETSNVDDDLWLSSRAHYKPIIECCGGTELASSYIQGSMFQPQAFGAFSSTAMTTGFVILD 498
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E GVPYPDDQPCVGEVGLFPL +GA+DRLLNADHEEVYF+GMP+YKGM LR+HGDIIKRT
Sbjct: 499 ENGVPYPDDQPCVGEVGLFPLIMGATDRLLNADHEEVYFKGMPIYKGMHLRKHGDIIKRT 558
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY +VQGRADDTMNLGGIKTSSVEIERVCD+ADESILE+AAIS +P GGPE+LV+FV
Sbjct: 559 VGGYFVVQGRADDTMNLGGIKTSSVEIERVCDKADESILESAAISTAPLNGGPEMLVVFV 618
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720
VLKKG+ +PD+LKM FSKAIQ LNPLFKVS VK+VPEFPRTASNK+LRRVLRDQIKHE
Sbjct: 619 VLKKGYNCEPDELKMKFSKAIQRNLNPLFKVSFVKIVPEFPRTASNKILRRVLRDQIKHE 678
Query: 721 LSVRSRI 727
LSV SRI
Sbjct: 679 LSVWSRI 685
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503439|ref|XP_004162003.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1075 bits (2779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/727 (69%), Positives = 603/727 (82%), Gaps = 2/727 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK++ E+ +EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSVWELDIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH L+YYSVY +W+ S GPP YWFPS++QSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHHLLYYSVYANWNISSNGPPPYWFPSINQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQK + + PE YW I L E+SV F++ P+CILDRT+KS WLP S+LNIAECCL
Sbjct: 121 FSLFQKLSYQSPEIYWSIVLHELSVTFQKPPRCILDRTEKSN--VRWLPDSILNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LPS+ K+DN+ AIVWR + CD S VN MT K+LRE+V LVANALD FSKGDAIAIDM
Sbjct: 179 LPSSRPLKDDNSSAIVWRNEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDAIAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RLR+SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLRISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++FLS+ PR N YSPVY+ D V N
Sbjct: 299 SRVIQGGSCKAIVIPATGNRLDVDLREQDLSWEEFLSTAKEFPRSNRYSPVYHSSDGVTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQLS IRC A+ WAH+D++ GDV+CWPTNLGWVMGPV ++SS L
Sbjct: 359 ILFSSGTTGEPKAIPWTQLSPIRCAADSWAHMDVQPGDVFCWPTNLGWVMGPVSVYSSLL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 AGATLALYHGSPLGHGFGKFVQDAGVTLLGTVPSLVKTWKDTRCMEGLNWTKIRHFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y I E CGGTEL+S+YI G+ LQPQAFGAF+TA+MT VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPIFEFCGGTELASSYINGTPLQPQAFGAFTTASMTTEFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+PYP+DQPC+GE+GLFP+YLGAS+ LLNADH++VYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPYPEDQPCIGEIGLFPIYLGASNELLNADHDKVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY +VQGRADDTMNLGGIKTSSVEIER+CD DESILETAA+S+SP GGPE LVI V
Sbjct: 599 VGGYFVVQGRADDTMNLGGIKTSSVEIERICDHVDESILETAAVSLSPIEGGPEQLVILV 658
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720
VL+K + P +LK+ FSKAIQ LNPLFKV VK+VP FPRTASNKLLRRVLR Q+K E
Sbjct: 659 VLRKEYERSPQELKVKFSKAIQKNLNPLFKVGFVKIVPSFPRTASNKLLRRVLRKQMKDE 718
Query: 721 LSVRSRI 727
L++RS++
Sbjct: 719 LALRSQL 725
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448834|ref|XP_004142170.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1073 bits (2776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/727 (69%), Positives = 604/727 (83%), Gaps = 2/727 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK++ E+ +EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSVWELDIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQK + + PE YW I L E+SV F++ P+CILDRT+KS WLP S+LNIAECCL
Sbjct: 121 FSLFQKLSYQSPEIYWSIVLHELSVTFQKPPRCILDRTEKSNV--RWLPDSILNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LPS+ K+DN+ AIVWR + CD S VN MT K+LRE+V LVANALD FSKGDAIAIDM
Sbjct: 179 LPSSRPLKDDNSSAIVWRNEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDAIAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RLR+SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLRISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++FLS+ PR N YSPVY+ D V N
Sbjct: 299 SRVIQGGSCKAIVIPATGNRLDVDLREQDLSWEEFLSTAKEFPRSNRYSPVYHSSDGVTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGWVMGPV ++SS L
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWVMGPVSVYSSLL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 AGATLALYHGSPLGYGFGKFVQDAGVTLLGTVPSLVKTWKDTRCMEGLNWTKIRHFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y I E CGGTEL+S+YI G+ LQPQAFGAF+TA+MT VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPIFEFCGGTELASSYINGTPLQPQAFGAFTTASMTTEFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+PYP+DQPC+GE+GLFP+YLGAS+ LLNADH++VYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPYPEDQPCIGEIGLFPIYLGASNELLNADHDKVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY++VQGRADDTMNLGGIKTSSVEIER+CD DESILETAA+S+SP GGPE LVI V
Sbjct: 599 VGGYLVVQGRADDTMNLGGIKTSSVEIERICDHVDESILETAAVSLSPIEGGPEQLVILV 658
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720
VL+K + P +LK+ FSKAIQ LNPLFKV VK+VP FPRTASNKLLRRVLR Q+K E
Sbjct: 659 VLRKEYERSPQELKVKFSKAIQKNLNPLFKVGFVKIVPSFPRTASNKLLRRVLRKQMKDE 718
Query: 721 LSVRSRI 727
L++RS++
Sbjct: 719 LALRSQL 725
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503441|ref|XP_004162004.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/727 (68%), Positives = 610/727 (83%), Gaps = 2/727 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK+I E+G+EDL+K GLKL EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSIWELGIEDLVKTGLKLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQKF++++PE YW I L+E+S+ F++AP+CILDRT+K G WLP S+LNIAECCL
Sbjct: 121 FSLFQKFSIQNPEIYWSIVLQELSITFQKAPRCILDRTEKPN--GRWLPDSMLNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
S+ ++DN++AIVWR++ CD S VN MT K+LRE+V LVANALD FSKGD +AIDM
Sbjct: 179 RSSSRLLRDDNSLAIVWRDEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDVVAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RL +SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLLISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++F+S+ PR N YSP+Y+ +DA+ N
Sbjct: 299 SRVIEGGSCKAIVIPASGNRLEVDLREQDLSWEEFISTAKEFPRSNCYSPMYHSIDAMTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGW MGPV ++S+FL
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWAMGPVSVYSAFL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 TGATLALYHGSPLGYGFGKFVQDAGVTMLGTVPSLVKTWKDTRCMEGLNWTKIRYFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y + E CGGTEL S++I GS +QPQAFGAFSTA+MT G VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPLFECCGGTELGSSFIVGSPVQPQAFGAFSTASMTTGFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+P PDDQPC+GE+GLFP YLGAS LLNADH+EVYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPSPDDQPCIGEIGLFPTYLGASSELLNADHDEVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY++VQGRADDTMNLGGIKTSSVE+ER+CD DES+LETAA++VSP GGPE LVI V
Sbjct: 599 VGGYLVVQGRADDTMNLGGIKTSSVELERICDHVDESLLETAAVAVSPIQGGPEQLVILV 658
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720
VL++G+ P +LK+ FSKAIQS LNPLFKV VK+VP FPRTASNKLLRRVLR Q+K E
Sbjct: 659 VLREGYKKSPQELKIKFSKAIQSNLNPLFKVGFVKIVPSFPRTASNKLLRRVLRKQMKDE 718
Query: 721 LSVRSRI 727
++++S++
Sbjct: 719 IALQSQL 725
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448832|ref|XP_004142169.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1069 bits (2765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/727 (68%), Positives = 609/727 (83%), Gaps = 2/727 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK+I E+G+EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSIWELGIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQKF++++PE YW I L+E+S+ F++AP+CILDRT+K G WLP S+LNIAECCL
Sbjct: 121 FSLFQKFSIQNPEIYWSIVLQELSITFQKAPRCILDRTEKPN--GRWLPDSMLNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
S+ ++DN++AIVWR++ CD S VN MT K+LRE+V LVANALD FSKGD +AIDM
Sbjct: 179 RSSSRLLRDDNSLAIVWRDEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDVVAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RL +SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLLISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++F+S+ PR N YSP+Y+ +DA+ N
Sbjct: 299 SRVIEGGSCKAIVIPASGNRLEVDLREQDLSWEEFISTAKEFPRSNCYSPMYHSIDAMTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGW MGPV ++S+FL
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWAMGPVSVYSAFL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 TGATLALYHGSPLGYGFGKFVQDAGVTMLGTVPSLVKTWKDTRCMEGLNWTKIRYFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y + E CGGTEL S++I GS +QPQAFGAFSTA+MT G VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPLFECCGGTELGSSFIVGSPVQPQAFGAFSTASMTTGFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+P PDDQPC+GE+GLFP YLGAS LLNADH+EVYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPSPDDQPCIGEIGLFPTYLGASSELLNADHDEVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY++VQGRADDTMNLGGIKTSSVE+ER+CD DES+LETAA++VSP GGPE LVI V
Sbjct: 599 VGGYLVVQGRADDTMNLGGIKTSSVELERICDHVDESLLETAAVAVSPIQGGPEQLVILV 658
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720
VL++G+ P +LK+ FSKAIQS LNPLFKV VK+VP FPRTASNKLLRRVLR Q+K E
Sbjct: 659 VLREGYKKSPQELKIKFSKAIQSNLNPLFKVGFVKIVPSFPRTASNKLLRRVLRKQMKDE 718
Query: 721 LSVRSRI 727
++++S++
Sbjct: 719 IALQSQL 725
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525251|ref|XP_003531240.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/730 (70%), Positives = 605/730 (82%), Gaps = 5/730 (0%)
Query: 1 MGKNIREVGVEDLMKVG-LKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWH 59
M K++RE+GV+DL+ G L L EA E +L ++S S+ IW ++V R++LKP
Sbjct: 1 MEKSVRELGVQDLVNAGGLTLAEANELYHVLTDILSQSQS--PSHIWHQIVTRRLLKPSF 58
Query: 60 PHGLHQLVYYSVYND-WDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPI 118
PH LHQL+YYSVY+ + + P YWFPS++QSK TNLG +E H PKLLG +YKDPI
Sbjct: 59 PHSLHQLLYYSVYHSAFHSQHASLPHYWFPSIEQSKRTNLGRLMETHAPKLLGASYKDPI 118
Query: 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILD-RTDKSKHGGTWLPGSVLNIAE 177
TSF LF KF+V+HP+ YW + LKE+SV F E PKCILD +D SKHGGTWLPGSVLNIA+
Sbjct: 119 TSFHLFHKFSVQHPQVYWSLILKELSVSFVEPPKCILDTSSDPSKHGGTWLPGSVLNIAD 178
Query: 178 CCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIA 237
CCL P+ + K D+T+A+VWR++ D+S VN MT K+LR QVMLVANA+D FSKGDAIA
Sbjct: 179 CCLQPTPYPHKTDDTLAVVWRDEGFDDSEVNGMTLKQLRHQVMLVANAIDATFSKGDAIA 238
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
IDM MTV AVIIYLAI+LAG VVVSIADSFA +EIATRLRVSKAKGIFTQDFI RGGRKF
Sbjct: 239 IDMQMTVNAVIIYLAIVLAGCVVVSIADSFAPKEIATRLRVSKAKGIFTQDFISRGGRKF 298
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA 357
PLYS+V+ AA K IVLP IG+D+G+ LR+ D+SWK FLSS HPR ++YSP+ +D
Sbjct: 299 PLYSRVIEAAACKVIVLPVIGDDLGVQLRDCDISWKVFLSSSRQHPRSHHYSPIIQSIDT 358
Query: 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417
V NILFSSGTTGEPKAIPWTQLS IR A+ WA ID++ GDVYCWPTNLGWVMGP +++S
Sbjct: 359 VTNILFSSGTTGEPKAIPWTQLSPIRSAADAWAFIDIQPGDVYCWPTNLGWVMGPTLIYS 418
Query: 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477
FL+GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGLDWTKI+ F
Sbjct: 419 CFLSGATLALYHGSPLGHGFGKFVQDAGVTILGTVPSLVKTWKSTQCMEGLDWTKIKIFC 478
Query: 478 STGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV 537
STGETSNVDDDLWLSSK++Y IIE CGGTEL+S+YI GS LQPQAFGAFSTA+MT GLV
Sbjct: 479 STGETSNVDDDLWLSSKSYYKPIIECCGGTELASSYIIGSPLQPQAFGAFSTASMTTGLV 538
Query: 538 ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII 597
ILDE GVPYP+D CVGEVGLFP+Y+GA+DRLLNAD+EEVYF+GMP+YKG LRRHGDII
Sbjct: 539 ILDENGVPYPEDVACVGEVGLFPIYMGATDRLLNADNEEVYFKGMPIYKGKVLRRHGDII 598
Query: 598 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657
KRTVGG+ +VQGRADDTMN+GGIKTSSVEIERVCD+ADE ILETAAISV+PA GGPE LV
Sbjct: 599 KRTVGGHFVVQGRADDTMNIGGIKTSSVEIERVCDRADEGILETAAISVAPANGGPEQLV 658
Query: 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI 717
IF VLKKG+ S + LK FSKAIQS LNPLFKVSLVK+VP+FPRTASNKLLRRVLRDQ+
Sbjct: 659 IFAVLKKGYNSNAETLKRKFSKAIQSNLNPLFKVSLVKIVPDFPRTASNKLLRRVLRDQM 718
Query: 718 KHELSVRSRI 727
K ELS++SR+
Sbjct: 719 KRELSIQSRL 728
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 727 | ||||||
| TAIR|locus:2035721 | 727 | AAE18 "acyl-activating enzyme | 0.995 | 0.995 | 0.701 | 4.3e-283 | |
| TAIR|locus:2178277 | 721 | AAE17 "acyl-activating enzyme | 0.966 | 0.975 | 0.509 | 5.6e-187 | |
| TIGR_CMR|BA_2553 | 646 | BA_2553 "acetoacetyl-CoA synth | 0.818 | 0.921 | 0.274 | 7e-49 | |
| DICTYBASE|DDB_G0277815 | 674 | acsA "acetyl-CoA synthetase" [ | 0.818 | 0.882 | 0.259 | 1.1e-41 | |
| TIGR_CMR|CPS_3955 | 648 | CPS_3955 "acetyl-CoA synthetas | 0.801 | 0.899 | 0.257 | 9.6e-38 | |
| TIGR_CMR|SO_2743 | 650 | SO_2743 "acetyl-coenzyme A syn | 0.786 | 0.88 | 0.252 | 5e-37 | |
| UNIPROTKB|P27550 | 652 | acs [Escherichia coli K-12 (ta | 0.726 | 0.809 | 0.265 | 9.8e-36 | |
| UNIPROTKB|F1SAS2 | 672 | ACSS1 "Uncharacterized protein | 0.801 | 0.867 | 0.269 | 2.6e-35 | |
| TIGR_CMR|SPO_1813 | 654 | SPO_1813 "acetyl-coenzyme A sy | 0.790 | 0.879 | 0.253 | 2.9e-35 | |
| MGI|MGI:1915988 | 682 | Acss1 "acyl-CoA synthetase sho | 0.768 | 0.819 | 0.261 | 8.2e-35 |
| TAIR|locus:2035721 AAE18 "acyl-activating enzyme 18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2720 (962.5 bits), Expect = 4.3e-283, P = 4.3e-283
Identities = 512/730 (70%), Positives = 605/730 (82%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 477
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 478 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 537
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE GVPYPDDQPC GEVGLFP +LGA+DRLLNA+H+EVYF+GMPMYK LRRHGDI+KR
Sbjct: 538 DENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRHGDIVKR 597
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
TVGGY VQGRADDTMNLGGIKTSS+EIERVCDQADE I ETAA++++P GGPE+LVIF
Sbjct: 598 TVGGYYNVQGRADDTMNLGGIKTSSIEIERVCDQADECISETAAVTLTPPNGGPELLVIF 657
Query: 660 VVLKKGFTSQP-DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 718
VLK+GF Q ++LKM FS+ IQ LNPLFKVS VK+VPEFPRTAS+KLLRRVLRDQIK
Sbjct: 658 AVLKEGFKQQSGEELKMKFSRTIQKDLNPLFKVSFVKIVPEFPRTASSKLLRRVLRDQIK 717
Query: 719 HEL-SVRSRI 727
EL S+RSRI
Sbjct: 718 QELLSLRSRI 727
|
|
| TAIR|locus:2178277 AAE17 "acyl-activating enzyme 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1813 (643.3 bits), Expect = 5.6e-187, P = 5.6e-187
Identities = 367/721 (50%), Positives = 480/721 (66%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K++ + D+ +G+ + +E+ + L+ +I S E W + ++R++L P P
Sbjct: 4 KSLNSITKSDIEALGISGDVSEKLLRDLEDIIHGSS--TPPETWIQ-ISRRILHPNLPFS 60
Query: 63 LHQLVYYSVYNDWDASIKGPPL-YWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSF 121
HQ++YY Y D+ GP L W P + LTN+G LE G + LG YK+P++SF
Sbjct: 61 FHQMMYYGCYKDF-----GPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSF 115
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDR-TDKSKHGGTWLPGSVLNIAECCL 180
FQ+F+V +PE YW+ L E++++F PKCIL++ T GG WLPG+ LN A CL
Sbjct: 116 SSFQEFSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDNPGGKWLPGAYLNPARNCL 175
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
RR +D + I WR++ D+ VN MT ELR QV L A+AL + + AIA+D
Sbjct: 176 TNGFKRRLDD--IVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVD 233
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V +VIIYLAI+LAG+VVVSIADSF+ REI+TRL++SKAK IFTQD I+RG + PL
Sbjct: 234 MPMNVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPL 293
Query: 300 YSKVLGA-APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV 358
Y +V+ A APL AIV+PA G+ + LRE+DLSW +FL + + R Y P A
Sbjct: 294 YRRVVDAEAPL-AIVVPARGSSCRMKLREKDLSWNNFLGNAR-NLRGVEYVAAEKPAGAY 351
Query: 359 VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418
NILFSSGTTGEPKAIPWT +S ++ A+ W H+D++ GDV WPTNLGW+MGP ++++S
Sbjct: 352 TNILFSSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYAS 411
Query: 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+NGA + LY GSPL +F KFVQDA V+VLG +PS+V+ W+N+N G DW++IR F S
Sbjct: 412 LINGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGS 471
Query: 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVI 538
TGE SN+D+ LWL +A Y +IE CGGTE+ ++I GSLLQPQ+ AFSTA M L I
Sbjct: 472 TGEASNIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFI 531
Query: 539 LDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIK 598
LDE P P VGE+ L P GAS LLN +H +VYF+GMP ++G LRRHGD+ +
Sbjct: 532 LDEDSNPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFE 591
Query: 599 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658
RT GY GRADDTMNLGGIK S+EIERVC+ D+S+LETAAI V P GGPE LVI
Sbjct: 592 RTSKGYYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPEQLVI 651
Query: 659 FVVLKKGFTSQPDK--LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 716
VV K S PD LK F+ IQ KLNPLFKVS V +P PRTA+NK++RRVLR Q
Sbjct: 652 AVVFKSPEFSNPDLNLLKKSFNSEIQKKLNPLFKVSSVVTLPSLPRTATNKVMRRVLRQQ 711
Query: 717 I 717
+
Sbjct: 712 L 712
|
|
| TIGR_CMR|BA_2553 BA_2553 "acetoacetyl-CoA synthase, putative" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 7.0e-49, P = 7.0e-49
Identities = 177/644 (27%), Positives = 296/644 (45%)
Query: 86 WFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISV 145
WFP+ + + T L + K LG Y+D + F ++E +W A K +
Sbjct: 6 WFPTEEYKEKTRLYGWM-----KSLG--YED----YETFYNKSIEETAWFWGEAEKVVGY 54
Query: 146 VFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDES 205
+ + +LD + + W G N+ E L + +D T + +
Sbjct: 55 QWMKPYTEVLDLQNGTPFA-QWYNGGTCNVVESVL---SRWLADDETRTQPALQYEGENG 110
Query: 206 AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264
TY+EL V AN L KGD + I MPM V+ LA++ G ++ I
Sbjct: 111 TSKSFTYEELDSWVSRAANGLKHAGIEKGDRVTIYMPMIPETVVAMLAVMKIGAIISPIF 170
Query: 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PL--KAIVLPAIGN 319
FA+ + TR++ + +K I T D R G+ L +V A P K +++ GN
Sbjct: 171 SGFASDAVMTRVQAAGSKMIITADGFSRRGKIVSLKDEVDKACEHCPTVEKVVIVRHAGN 230
Query: 320 DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQL 379
D P D SW S+++ +P ++ + D ++ ++++SGTTG+PK T
Sbjct: 231 DF-TP-HNYDFSW----STLEKE-KPFVHAEEMHSDDPLM-LIYTSGTTGKPKGTVHTHA 282
Query: 380 S-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP----LE 434
++ + +++K GD W T++GW+MGP +LF S +NGAT+ +Y+G P +
Sbjct: 283 GFPLKAAFDAGFGMNIKQGDRVLWVTDMGWMMGPFLLFGSLINGATMVMYEGVPDFPKAD 342
Query: 435 RSFGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLS 492
R + + V +T LG P+L++A + + + FASTGE N D +WL
Sbjct: 343 RLW-ETVDKYEITHLGISPTLIRALMAKGDEYVNKHSLKSLEVFASTGEPWNPDPWMWLF 401
Query: 493 SKAWYN--AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQ 550
+ I GGTE+S L++P A +F+ + V+LD+ G P D+
Sbjct: 402 ETVGKSNVPICNYSGGTEISGGIFGNVLIKPIAPISFNASLPGMAAVVLDDQGNPIRDE- 460
Query: 551 PCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 610
VGE+ L ++G + D E ++ + HGD + YII GR
Sbjct: 461 --VGELCLEKPWVGMTKSFWE-DDERYVNTYWSRFENKWV--HGDWVVYDGEQYIIT-GR 514
Query: 611 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP 670
+DDT+N+ G + E E + + ++ ++E AAI V G EV FVVL+ T
Sbjct: 515 SDDTLNIAGKRIGPAEYESILVKHND-VIEAAAIGVPDDVKG-EVCHCFVVLRDNVTFTG 572
Query: 671 DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714
+ K + S + S + + VV + P+T ++K++RRV++
Sbjct: 573 ELKKELMS-LVNSHIGKALCPKDIHVVEDLPKTRNSKVMRRVIK 615
|
|
| DICTYBASE|DDB_G0277815 acsA "acetyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 167/644 (25%), Positives = 286/644 (44%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT 166
P + + + + K ++E P +W+ KE F + + K +
Sbjct: 21 PSFSTKCHISSVEQYNEMYKESIESPNQFWDKKAKEFLTWFSDYTT--VQHGSFEKGDIS 78
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W +N++ C+ H ++ + VAI++ D +E+ V +TY+E+ E+V ++N L
Sbjct: 79 WFLNGKINVSYNCI--DRHLKENADKVAILFEGD--EETMVKKVTYREMFEEVCRLSNLL 134
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
++ KGD +AI +P T A+ LA G + I F I +R+ +K + I
Sbjct: 135 ISLGVGKGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFAGFGYESIVSRVHDAKCRVII 194
Query: 286 TQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLS---WKDFLSSVDY 341
T D LRGGR PL K+ K + + + G P + S W D + +D+
Sbjct: 195 TADEGLRGGRYIPLKEKIDQVVQHCKLVQHVLVFKNTGRPTITFNPSIDIWADE-AMLDH 253
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVY 400
P Y PV+ + + IL++SG+TG PK + TQ + A ++ D DVY
Sbjct: 254 RP---YCPPVWLDSEDPLFILYTSGSTGTPKGLVHTQAGYLLYAAMTHRYVFDYHDSDVY 310
Query: 401 CWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLV 456
++GW+ G I++ NGAT +++G+PL + + + VQ +T T P+ +
Sbjct: 311 ACMADVGWITGHSYIVYGPLANGATTFIFEGTPLYPTPARYWEMVQRHKITQFYTAPTAI 370
Query: 457 KAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSA 512
++ + + D + +R S GE N + W ++ AI+++ TE
Sbjct: 371 RSLMKFPISFTQQSDKSSLRVLGSVGEPINPEAWRWFNTNVGEGRCAIVDTYWQTESG-- 428
Query: 513 YIQGSLLQPQAFGAFSTATMTA-----G--LVILD-ECGVP-Y--PDDQPCVGEVGLFPL 561
G L+ P G ST +A G L +LD + G Y PD C G+ +
Sbjct: 429 ---GHLITPLP-GVTSTKPGSATKPFFGIELQVLDSKTGERLYINPDINGCKEISGVLAI 484
Query: 562 ---YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618
+ G + R + H M YKG GD +K GY ++GR DD +N+
Sbjct: 485 SKPWPGIA-RSVYRSHGRYLQTYMTQYKGHYFT--GDGVKLDSDGYYWIEGRVDDVINVS 541
Query: 619 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS 678
G + + E+E SI AA+ P + ++ F LK+G+ + M+
Sbjct: 542 GHRLGTAELESALVGC--SICAEAAVVGYPHDIKGQGILAFCTLKEGYQEDESNVIMMLK 599
Query: 679 KAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722
K +++ + P ++ + P P+T S K++RR+LR HE S
Sbjct: 600 KEVRNVIGPFATPDVIVITPSLPKTRSGKIMRRILRKIGCHESS 643
|
|
| TIGR_CMR|CPS_3955 CPS_3955 "acetyl-CoA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 9.6e-38, P = 9.6e-38
Identities = 161/626 (25%), Positives = 263/626 (42%)
Query: 108 KLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTW 167
K + D T +++K ++E P+ +W KE ++ P + + D W
Sbjct: 13 KAKAHTHIDAATYDAMYKK-SIEQPDEFWGEQAKEFIDWYK--PWDSVSKVDLKNSEINW 69
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWR-EDRCDESAVNLMTYKELREQVMLVANAL 226
G LN++ C+ H + N AI++ +D D+S V TY+EL + V AN L
Sbjct: 70 FSGGKLNVSYNCI--DRHLATKANDTAIIFEGDDPNDDSKV---TYQELHDHVCRFANLL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
+ KGD + I MPM LA G + + F+ I R+ + K +
Sbjct: 125 KERGVKKGDRVCIYMPMIPEVGYAMLACARIGAIHSVVFGGFSTESIKARVLDADCKVVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
T D LRGG++ PL S V A I P + + + + D++W D + ++Y
Sbjct: 185 TADQSLRGGKRIPLKSNVDAAV----IDCPNVHSVIVVARTGGDVAWNDKVD-INYEEAV 239
Query: 346 NYYSPVYNP--VDAV--VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVY 400
S + P +DA + +L++SG+TG PK + T I A ++ D K G+VY
Sbjct: 240 AKQSAICEPEVMDAEDPLFVLYTSGSTGTPKGVVHTCGGYILYAAMTHKYVFDYKEGEVY 299
Query: 401 CWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAG---VTVLGTVPSLV 456
+ GW+ G I + NGAT +++G P G+F Q V V T P+ +
Sbjct: 300 WCTADAGWITGHSYIFYGPLANGATTLVFEGVPTYPDAGRFWQVCEKHKVNVFYTAPTAI 359
Query: 457 KAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSA 512
+A + + + D + +R + GE N + W WY ++ +C +
Sbjct: 360 RALMSIGDDLVNQADLSSLRLLGTVGEPIN--PEAW----HWYYEVVGKSNCPIVDTWWQ 413
Query: 513 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV-GE-VGLFPLYLGASDRL- 569
G +L GA AG + D + GE GL + +L
Sbjct: 414 TETGGILITSLPGAVDMKPGCAGKPFFGVQPALFDKDGNTLEGENAGLLVMTASWPGQLR 473
Query: 570 -LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628
+ DH Y + Y G GD KR GY + GR DD +N+ G + + EIE
Sbjct: 474 TVYGDHNRFYQTYLGQYPGNYFT--GDGAKRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 531
Query: 629 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
++ E A + G V +V L G ++ D+L + + + +L
Sbjct: 532 SAL-VLHPAVAEAAVVGYPHEIKGQGVYC-YVTLM-GNATESDELNVELREFVAKELGRF 588
Query: 689 FKVSLVKVVPEFPRTASNKLLRRVLR 714
K ++ P P+T S K++RR+LR
Sbjct: 589 AKPDYIQWSPGLPKTRSGKIMRRILR 614
|
|
| TIGR_CMR|SO_2743 SO_2743 "acetyl-coenzyme A synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 5.0e-37, P = 5.0e-37
Identities = 158/626 (25%), Positives = 271/626 (43%)
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAECCL 180
++Q+ ++ +PE +W K I + P + +T H + W LN + CL
Sbjct: 27 MYQE-SIVNPEGFWREHGKRIDWI---KPYTKIKKTTFDDHNLSINWFYDGTLNASANCL 82
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
H + VAI+W D +E +TY EL QV ANAL + +GD + I
Sbjct: 83 --DRHLAAHSDRVAIIWEGDNANEQ--RKITYGELHTQVCKFANALRSQGVRRGDIVTIY 138
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM A + LA G V + F+ IA+R+ K+K + T D +RGGR PL
Sbjct: 139 MPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKIVITSDEGMRGGRAIPL 198
Query: 300 YSKVLGAA--P-----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352
+ A P K IVL G + + +D+ W + + H
Sbjct: 199 KRNIDDALKHPDVTSVEKVIVLKRTGGKIDW-VEGRDVWWHSLVETASEHCAVEEMG-AE 256
Query: 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG 411
+P+ +L++SG+TG PK + T + + ++ D K G++Y ++GW+ G
Sbjct: 257 DPLF----LLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKPGEIYWCTADVGWITG 312
Query: 412 -PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTNCL 465
+++ NGAT+ +++G P S G+ + V +L T P+L++A
Sbjct: 313 HSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVNILYTAPTLIRALMAEGKQHF 372
Query: 466 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQPQA 523
+ + + +R S GE N + W WY+ +I E C + G +L
Sbjct: 373 DKYNGSSLRIMGSVGEPIN--PEAW----RWYHEVIGHEHCPIVDTWWQTETGGILITPL 426
Query: 524 FGAFSTATMTA-----GL--VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEE 576
GA T +A G+ ++D G + G + L + G R + DHE
Sbjct: 427 PGATDTKPGSATRPFFGVQPALVDNMGNIL--EGATEGNLVLLDSWPGQM-RTVYGDHER 483
Query: 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE 636
++GM GD +R GY + GR DD +N+ G + + E+E + E
Sbjct: 484 FVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL-VSHE 540
Query: 637 SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKV 696
+ E A + P + + +V L +G T + ++L+ + ++ ++ L L++
Sbjct: 541 LVAEAAVVGY-PHDIKGQGIYAYVTLTRG-TEESEELRQELRQWVRKEIGALATPDLIQW 598
Query: 697 VPEFPRTASNKLLRRVLRDQIKHELS 722
P+T S K++RR LR +E++
Sbjct: 599 ATGLPKTRSGKIMRRFLRKIAANEVT 624
|
|
| UNIPROTKB|P27550 acs [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 9.8e-36, P = 9.8e-36
Identities = 151/568 (26%), Positives = 238/568 (41%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++YKEL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DASQSKHISYKELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
+ KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGAA--PL-----KAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A P +VL G + +DL W D +
Sbjct: 185 TSDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQ-EGRDLWWHDLVEQ 243
Query: 339 V-DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKV 396
D H N D + IL++SG+TG+PK + T + A + ++ D
Sbjct: 244 ASDQHQAEEM-----NAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHP 297
Query: 397 GDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTV 452
GD+Y ++GWV G +L+ GAT +++G P + V V +L T
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTA 357
Query: 453 PSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA--IIESCGGTE 508
P+ ++A +EG D + +R S GE N + W K ++++ TE
Sbjct: 358 PTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTE 417
Query: 509 LSSAYIQGSLLQPQAFGAFSTATMTAGL--VILDECGVPYPDDQPCVGEVGLFPLYLGAS 566
+ ++ L A S G+ ++D G P + G + + + G +
Sbjct: 418 -TGGFMITPLPGATELKAGSATRPFFGVQPALVDNEGNPL--EGATEGSLVITDSWPGQA 474
Query: 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626
R L DHE +K M GD +R GY + GR DD +N+ G + + E
Sbjct: 475 -RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAE 531
Query: 627 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN 686
IE A I E A + + P + + +V L G P+ + ++ ++
Sbjct: 532 IESAL-VAHPKIAEAAVVGI-PHNIKGQAIYAYVTLNHGEEPSPELYAEV-RNWVRKEIG 588
Query: 687 PLFKVSLVKVVPEFPRTASNKLLRRVLR 714
PL ++ P+T S K++RR+LR
Sbjct: 589 PLATPDVLHWTDSLPKTRSGKIMRRILR 616
|
|
| UNIPROTKB|F1SAS2 ACSS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 408 (148.7 bits), Expect = 2.6e-35, P = 2.6e-35
Identities = 170/631 (26%), Positives = 276/631 (43%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT 166
P+L A P ++ P A+W K++ +V+ + D +S G
Sbjct: 28 PRLWSSAPAAPPGFYQERIALAAREPAAFWGPLAKDV-LVWDTPYHTVSDCDFRSGKIG- 85
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W G LN++ CL H +K +VA++W D +AV + TY+EL E +AN L
Sbjct: 86 WFLGGQLNVSVNCL--DQHVQKSPESVALIWERDE-PGTAVRI-TYRELLETTCRLANTL 141
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
+GD +AI MP++ AV LA G V I F+A +A R+ +K K +
Sbjct: 142 KRHGVCRGDRVAIYMPVSPMAVAAMLACARIGAVHTVIFAGFSAGSLAGRINDAKCKVLI 201
Query: 286 TQDFILRGGRKFPLYSKVLGAAPL-KAI--VLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342
T + LRGGR L V A L +I VL A D +P+ D+ + ++ +
Sbjct: 202 TFNQGLRGGRVVELKRIVDEAVKLCPSIQHVLVAHRTDNKVPMGNLDIPLEQEMAKEE-- 259
Query: 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 401
P +P + + +L++SG+TG+PK + TQ + A + D + GD++
Sbjct: 260 --P-VCAPESMGSEDTLFLLYTSGSTGKPKGLVHTQAGYLLYAALTHRLVFDYRPGDIFG 316
Query: 402 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVK 457
++GW+ G +++ NGAT L++ +P+ G++ VQ + P+ +
Sbjct: 317 CMADIGWITGHSYVVYGPLCNGATSVLFESTPVYPDAGRYWETVQRLKINQFYGAPTAFR 376
Query: 458 AWR--NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAY 513
+ + ++ D + +R+ S GE N + WL ++++ TE
Sbjct: 377 LLLKYSDSWVKKYDRSSLRTLGSVGEPINHEAWEWLHQVVGDGRCTLVDTWWQTETGGIC 436
Query: 514 IQGSLLQPQAFGAFSTATMTA----GLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASD 567
I +P GA M G+V ++DE G + G + L + G +
Sbjct: 437 ISP---RPSEEGANILPCMAMRPLFGIVPVLMDEKGKVL-EGGDVSGALCLSQAWPGMA- 491
Query: 568 RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
R + DH+ + YF+ P Y GD RT GY + GR DD +N+ G + +
Sbjct: 492 RTIYGDHQRFIDAYFKAFPGYYFT-----GDGAYRTEEGYYQITGRMDDVINISGHRLGT 546
Query: 625 VEIERVCDQADE-SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 683
EIE AD ++ ETA I P E F+VLK G T D + +
Sbjct: 547 AEIEDA--MADHPAVPETAVIGY-PHDIKGEAAFAFIVLKDG-TGDVDVVVKELRSVVAD 602
Query: 684 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714
K+ V VV P+T S K++RR+LR
Sbjct: 603 KIAKYAVPDQVLVVKRLPKTRSGKVMRRLLR 633
|
|
| TIGR_CMR|SPO_1813 SPO_1813 "acetyl-coenzyme A synthetase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 2.9e-35, P = 2.9e-35
Identities = 161/634 (25%), Positives = 275/634 (43%)
Query: 110 LGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVV--FREAPKCILDRTDKSKHGGTW 167
+ RA+ + T R++ ++ PE +W K + + F + + + S + W
Sbjct: 19 VARAHVNADTYDRMYAA-SMADPEGFWAEQGKRVDWIKPFTQVKDVNYNFGEVSIN---W 74
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD 227
LN+A C+ H + AI+W D E+A ++ TYKEL V +AN L+
Sbjct: 75 YADGTLNVAANCI--DRHLATRGDQTAIIWEPDSPTEAAKHI-TYKELHGSVCRMANILE 131
Query: 228 TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286
++ KGD + I +PM A LA G + + F+ +A R+ AK + T
Sbjct: 132 SLGVRKGDRVVIYLPMIPEAAYAMLACARIGAIHSIVFAGFSPDALAARVNGCDAKVVIT 191
Query: 287 QDFILRGGRKFPLYSKVLGAA-----PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341
D RGGRK PL S A +K +V+ G + ++D + +
Sbjct: 192 ADEAPRGGRKTPLKSNADAALLHCKDTVKCLVVKRTGGQTTW-IADRDFDYNEMALEAS- 249
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGD 398
+Y +P + + IL++SG+TG+PK + T + A H D GD
Sbjct: 250 ----DYCAPAEMGAEDPLFILYTSGSTGQPKGVVHTTGGYLVYAA--MTHEITFDYHDGD 303
Query: 399 VYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAG---VTVLGTVPS 454
+Y ++GWV G I++ NGAT +++G P G+F + V T P+
Sbjct: 304 IYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPTYPDAGRFWEVCAKHKVNQFYTAPT 363
Query: 455 LVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA 512
++A + T+ +E D + +R + GE N + W WYN ++ G +
Sbjct: 364 AIRALMGQGTSFVEKHDLSDLRLLGTVGEPIN--PEAW----NWYNEVVGK-GKCPIVDT 416
Query: 513 YIQ----GSLLQPQAFGAFST---ATMTA--GLV--ILD-ECGVPYPDDQPCVGEVGLFP 560
+ Q G L+ P GA +T A M G+V +LD + GV + G + +
Sbjct: 417 WWQTETGGHLMTPLP-GAHATKPGAAMKPFFGVVPVVLDPQSGVEISGNG-VEGVLCIKD 474
Query: 561 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI 620
+ G R + DHE YKG GD +R G + GR DD +N+ G
Sbjct: 475 SWPGQM-RTVWGDHERFQKTYFADYKGYYFT--GDGCRRDAEGDYWITGRVDDVINVSGH 531
Query: 621 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA 680
+ + E+E A ++ E A + G + + +V L + +K + S
Sbjct: 532 RMGTAEVESAL-VAHAAVAEAAVVGYPHEIKG-QGIYCYVTLMNDREPSDELMKELRSW- 588
Query: 681 IQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714
+++++ P+ +++ P P+T S K++RR+LR
Sbjct: 589 VRTEIGPIASPDVIQWAPGLPKTRSGKIMRRILR 622
|
|
| MGI|MGI:1915988 Acss1 "acyl-CoA synthetase short-chain family member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 8.2e-35, P = 8.2e-35
Identities = 159/609 (26%), Positives = 270/609 (44%)
Query: 130 EHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189
+ P A+W ++ ++V+ + D ++ G W G LN++ CL H +K
Sbjct: 60 QEPAAFWGPLARD-TLVWDTPYHTVWDCDFRTGKIG-WFLGGQLNVSVNCL--DQHVQKS 115
Query: 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVI 248
T+A++W D + V + TY+EL E +AN L +GD +AI MP++ AV
Sbjct: 116 PETIALIWERDE-PGTEVRI-TYRELLETTCRLANTLKRHGVHRGDRVAIYMPVSPLAVA 173
Query: 249 IYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA- 307
LA G + + F+A +A R+ +K K + T + LRGGR L K++ A
Sbjct: 174 AMLACARIGAIHTVVFAGFSAESLAGRINDAKCKAVITFNQGLRGGRVVEL-KKIVDEAV 232
Query: 308 ---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFS 364
P VL A D +P+ D+ + ++ P +P + ++ +L++
Sbjct: 233 KSCPTVQHVLVAHRTDTKVPMGSLDIPLEQEMAK----EAP-VCTPESMSSEDMLFMLYT 287
Query: 365 SGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNG 422
SG+TG PK + TQ + A + D + GDV+ ++GW+ G +++ NG
Sbjct: 288 SGSTGTPKGLVHTQAGYLLYAAMTHKLVFDYQPGDVFGCVADIGWITGHSYVVYGPLCNG 347
Query: 423 ATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSFA 477
AT L++ +P+ G++ VQ + P+ V+ ++ D + +R+
Sbjct: 348 ATTVLFESTPVYPDAGRYWETVQRLKINQFYGAPTAVRLLLKYGDAWVKKYDRSSLRTLG 407
Query: 478 STGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA- 534
S GE N + WL ++++ TE I +P GA M
Sbjct: 408 SVGEPINHEAWEWLHKVVGDGRCTLVDTWWQTETGGICIAP---RPSEDGAEILPGMAMR 464
Query: 535 ---GLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE---EVYFRGMPMYK 586
G+V ++DE G + G + + + G + R + DH+ + YFR P Y
Sbjct: 465 PFFGIVPVLMDEKGNVL-EGGDVSGALCISQAWPGMA-RTIYGDHQRFVDAYFRAYPGYY 522
Query: 587 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE-SILETAAIS 645
GD RT GGY + GR DD +N+ G + + EIE AD ++ ETA I
Sbjct: 523 FT-----GDGAHRTEGGYYQITGRMDDVINISGHRLGTAEIEDA--MADHPAVPETAVIG 575
Query: 646 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS 705
P E F+VLK + + + + ++ +K+ + VV P+T S
Sbjct: 576 Y-PHDIKGEAAFAFIVLKDNISDENMVVNEL-KLSVATKIAKYAVPDQILVVKRLPKTRS 633
Query: 706 NKLLRRVLR 714
K++RR+LR
Sbjct: 634 GKVMRRLLR 642
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84P17 | AEE18_ARATH | 6, ., 2, ., 1, ., - | 0.7013 | 0.9958 | 0.9958 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.691 |
| 4th Layer | 6.2.1.16 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 727 | |||
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 0.0 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 0.0 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 3e-76 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 4e-73 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 5e-61 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 3e-56 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 3e-51 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 2e-49 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 3e-48 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 4e-46 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 3e-45 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 3e-39 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 6e-39 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 5e-35 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 6e-31 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 5e-29 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 9e-25 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 4e-24 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 2e-22 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 1e-21 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 6e-21 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 3e-20 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 2e-19 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 3e-19 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 8e-19 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 2e-18 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 4e-18 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 2e-17 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 5e-17 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 7e-17 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 9e-17 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 1e-16 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-16 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 2e-16 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 3e-16 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 4e-16 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 6e-16 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 4e-15 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 7e-15 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 1e-14 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-14 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-14 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-13 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-13 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 1e-13 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 5e-13 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 6e-13 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 8e-12 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 2e-11 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 3e-11 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 4e-11 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 9e-11 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 1e-10 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 2e-10 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 3e-10 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 3e-10 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 7e-10 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 8e-10 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 1e-09 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-09 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-09 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 3e-09 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 7e-09 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 7e-09 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 7e-09 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 2e-08 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 3e-08 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 6e-08 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 7e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-07 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 2e-07 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 3e-07 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 3e-07 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 3e-07 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 7e-07 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 7e-07 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 9e-07 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 1e-06 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-06 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 2e-06 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-06 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 3e-06 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 3e-06 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 3e-06 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-06 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 4e-06 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 4e-06 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 4e-06 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 6e-06 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 7e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-05 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 2e-05 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 2e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-05 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 3e-05 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 4e-05 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 5e-05 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 5e-05 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 5e-05 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 7e-05 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-04 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 1e-04 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 1e-04 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 1e-04 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 2e-04 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 2e-04 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 2e-04 | |
| pfam13193 | 43 | pfam13193, DUF4009, Domain of unknown function (DU | 2e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-04 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 3e-04 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 3e-04 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 3e-04 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 4e-04 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 5e-04 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 6e-04 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 6e-04 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 7e-04 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 8e-04 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 0.001 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 0.001 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 0.001 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 0.001 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 0.002 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 0.002 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 0.003 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 0.003 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 0.003 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 0.003 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 0.003 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 0.003 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 0.004 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 0.004 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 0.004 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 1254 bits (3246), Expect = 0.0
Identities = 452/730 (61%), Positives = 542/730 (74%), Gaps = 8/730 (1%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
GK++ E+ V DL GL EEAE+F K L+ +++ + G IWR +++ +L P HP
Sbjct: 4 AGKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRA-GASPPSIWRR-ISQSLLTPSHP 61
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
LHQL+YYS Y +WD+ GPP WFPS + +KLTNLG LE G +LLG YKDPI+S
Sbjct: 62 FALHQLMYYSCYKNWDSDTLGPPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISS 121
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F FQ+F+VE+PE YW I L E+S+VF P+CILD +D+S GG WLPG+VLN+AECCL
Sbjct: 122 FSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDESNPGGQWLPGAVLNVAECCL 181
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
P + D+++AI+WR++ D+ VN MT ELR QV VANALD + F KGDAIAID
Sbjct: 182 TPKPSKT--DDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAID 239
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V AVIIYLAIILAG VVVSIADSFA EIATRL++SKAK IFTQD I+RGG+ PL
Sbjct: 240 MPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPL 299
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
YS+V+ A KAIVLPA G V + LRE D+SW DFL+ + RP+ Y V PV+A
Sbjct: 300 YSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFT 359
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQL+ +R A+ WAH+D++ GD+ CWPTNLGW+MGP ++++S
Sbjct: 360 NILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASL 419
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
LNGATLALY GSPL R F KFVQDA VT+LGTVPS+VK W+NTNC+ GLDW+ IR F ST
Sbjct: 420 LNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGST 479
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE S+VDD LWL S+A Y IIE CGGTEL ++ GSLLQPQAF AFST M L IL
Sbjct: 480 GEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFIL 539
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
D+ G PYPDD PC GE+ LFPL GAS LLNADH +VYF+GMP++ G LRRHGDI +R
Sbjct: 540 DDSGNPYPDDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFER 599
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
T GGY GRADDTMNLGGIK SSVEIERVC+ ADES+LETAAI V P GGGPE LVI
Sbjct: 600 TSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIA 659
Query: 660 VVLK--KGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI 717
VLK G ++LK IF+ AIQ KLNPLFKVS V +VP FPRTASNK++RRVLR Q+
Sbjct: 660 AVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQL 719
Query: 718 KHELSVRSRI 727
ELS RS++
Sbjct: 720 AQELS-RSKL 728
|
Length = 728 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 841 bits (2175), Expect = 0.0
Identities = 347/499 (69%), Positives = 404/499 (80%), Gaps = 11/499 (2%)
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPMTV AVIIYLAI+LAG VVVS+ADSF+A+EIATRL +S AKG+FTQD +LRGGR PL
Sbjct: 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPL 60
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL--SSVDYHPRPNYYSPVYNPVDA 357
YSKV+ AAP KAIVLPA G V +PLREQDLSW DFL ++ N YSPVY PV++
Sbjct: 61 YSKVVEAAPAKAIVLPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVES 120
Query: 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417
V NILFSSGTTGEPKAIPWT LS +RC ++GWAH+D++ GDV CWPTNLGW+MGP +L+S
Sbjct: 121 VTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYS 180
Query: 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS 475
+FLNGATLALY G+PL R FGKFVQDAGVTVLG VPS+VKAWR+T +EGLDW+K+R
Sbjct: 181 AFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240
Query: 476 FASTGETSNVDDDLWLSS-KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 534
FASTGE S VDD LWLSS + +Y +IE CGGTEL+S YI +LLQPQA GAFSTA++
Sbjct: 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGT 300
Query: 535 GLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRR 592
V+L++ GVPYPDDQPCVGEV L P LGASDRLLNADH++VY++GMPMY KGM LRR
Sbjct: 301 RFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRR 360
Query: 593 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652
HGDI+KRT GGY VQGRADDTMNLGGIKTSSVEIER CD+A I ETAA+ V+P GG
Sbjct: 361 HGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGG 420
Query: 653 PEVLVIFV---VLKKGFTSQ-PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL 708
PE+LVIF+ KKGF P+ L+ F +AIQ+ LNPLFKVS VK+VPE PR ASNKL
Sbjct: 421 PELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKL 480
Query: 709 LRRVLRDQIKHELSVRSRI 727
LRRVLRDQ+K ELS RS++
Sbjct: 481 LRRVLRDQLKKELSGRSKL 499
|
Length = 499 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 254 bits (652), Expect = 3e-76
Identities = 148/573 (25%), Positives = 233/573 (40%), Gaps = 78/573 (13%)
Query: 166 TWLPGSVLNIAECCLLPSNHRRKE---DNTVAIVWREDRCDESAVNLMTYKELREQVMLV 222
W G LN+A L R E + AI++ + +TY +LR +V +
Sbjct: 1 KWFEGGTLNLALNAL----DRHLEADRPDDTAIIFDGEDGLFRE---LTYGDLRREVARL 53
Query: 223 ANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKA 281
ANAL D KGD +AI MP + AVI LA G + ++ +A +A R+
Sbjct: 54 ANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGP 113
Query: 282 KGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341
K + D R G++ L +V L + + +
Sbjct: 114 KVLIADDGTFRNGKEIALLEDADAVLSSVVVV------------PRLGLWYDEAVEKASE 161
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD 398
+ P D + +L++SGTTG+PK I + L R TA+ H DL GD
Sbjct: 162 K-----FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAK--FHGDLLPGD 214
Query: 399 VYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLE--RSFGKFVQDAGVTVLGTVPSL 455
+ ++ GW+ G +FS +GAT LY G P + ++ VT+ GT P+
Sbjct: 215 RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTF 274
Query: 456 VKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSS 511
++ E D + +R S GE N + W +Y+A I++ G TE
Sbjct: 275 LRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEW-----FYSALGVWILDIYGQTETGM 329
Query: 512 AYIQG--SLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-------GLFPLY 562
+I G + + + +D+ G P P P VGE+ G+ Y
Sbjct: 330 GFIAGRPPVKNGSSGLPLPGYAV----RRVDDEGNPVP---PGVGELVVRLPWPGMALTY 382
Query: 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 622
+R A Y GD +R GY + GR+DD + + G +
Sbjct: 383 WNDPERYKEAYFGRWYR-------------TGDWAERDEDGYFWLHGRSDDVIKVSGKRI 429
Query: 623 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 682
+EIE V A ++ E A + V P G ++++ FVVL G P++L + +
Sbjct: 430 GPLEIESVL-LAHPAVAEAAVVGV-PDPGKGQIVLAFVVLAAGVE--PNELAEEIRRHVA 485
Query: 683 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715
+ P ++ V E P+TAS K+ RR+LR
Sbjct: 486 RNIGPHAIPRKIRFVDELPKTASGKIQRRLLRK 518
|
Length = 528 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 244 bits (626), Expect = 4e-73
Identities = 150/530 (28%), Positives = 229/530 (43%), Gaps = 89/530 (16%)
Query: 203 DESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261
++ +V TY EL +V +A+ L + KGD + I MPM AV+ LAI G + V
Sbjct: 1 EDGSVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAV 60
Query: 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV 321
I F +ATRL+ ++AK + T D LR G++
Sbjct: 61 PIFSGFGPDAVATRLQDAEAKVLITADGFLRRGKR------------------------- 95
Query: 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 381
+ L++ I+++SGTTG+PK T
Sbjct: 96 -VDLKDDPAM-----------------------------IIYTSGTTGKPKGTVHTHAGF 125
Query: 382 -IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSF 437
++ + DLK GD W T++GW+MGP ++ L GAT+ LY+G+ P
Sbjct: 126 PVKAAKDIGFCFDLKPGDRLLWITDMGWMMGPWLVLGGLLLGATIVLYEGAPDYPDPDRL 185
Query: 438 GKFVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK- 494
+ V+ VT LG P+L++A R +EG D + +R STGE + + LWL +
Sbjct: 186 WRIVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERV 245
Query: 495 -AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553
II GGTE+S + ++P +F+ + ++DE G P V
Sbjct: 246 GGGRAPIINYSGGTEISGGILGNVPIRPIKPCSFNGPSPGMDADVVDEDGRPVR---GEV 302
Query: 554 GE-------VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYII 606
GE G+ + +R + E Y+ P G+ HGD GY
Sbjct: 303 GELVVRAPWPGMTRGFWRDPER-----YLETYWSRFP---GVW--VHGDWALVDEDGYWY 352
Query: 607 VQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKG 665
+ GR+DDT+ + G + EIE V + + E AAI V P G E +V FVVLK G
Sbjct: 353 ILGRSDDTIKVAGKRVGPAEIESVLNSHPA-VAEAAAIGVPDPVKG--EAIVCFVVLKPG 409
Query: 666 FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715
T L+ + + L F+ V V + P+T + K++RRV+R
Sbjct: 410 VT-PSAALEAELADHVGDALGKPFRPREVHFVSDLPKTRNGKIMRRVIRA 458
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 215 bits (551), Expect = 5e-61
Identities = 166/625 (26%), Positives = 263/625 (42%), Gaps = 76/625 (12%)
Query: 117 PITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIA 176
+ + +++VE A+WE V+ + +LD G W PG+ LN A
Sbjct: 4 SLADYHALWRWSVEDLAAFWESVWDFFDVIGSKGYVVVLDGDIMP--GARWFPGARLNYA 61
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
E L R +++ AI + + +++ ELR QV +A AL + GD
Sbjct: 62 ENLL-----RHADNDPAAIYAAGE---DGERREISWAELRSQVARLAAALRDLGVKPGDR 113
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+A +P AVI LA G + S + F + R + K +F D + G+
Sbjct: 114 VAGYLPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGK 173
Query: 296 KFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
+ K+ L+A+V+ + P + + S P + +
Sbjct: 174 EHDRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERL 233
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSIRCTAEGWAHIDLKVGDVYCWPTNLG 407
P D + IL+SSGTTG PK I L ++ E H DL+ GD + T G
Sbjct: 234 --PFDHPLWILYSSGTTGLPKCIVHGAGGTLLQHLK---EHGLHCDLRPGDRLFYYTTTG 288
Query: 408 WVMGPVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
W+M L S L+GATL LY GSPL + G+T+ GT + A
Sbjct: 289 WMMWN-WLVSGLLSGATLVLYDGSPLYPDPDVLWRLAAKLGITIFGTSAKYLDALEKAGI 347
Query: 465 --LEGLDWTKIRSFASTG-----ET-----SNVDDDLWLSSKAWYNAIIESCGGTELSSA 512
D + +R+ STG E S+V D+WL+S + GGT++
Sbjct: 348 EPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHVKSDVWLASIS---------GGTDICGC 398
Query: 513 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF---------PLY- 562
++ G+ P G + + DE + +P +GEVG PLY
Sbjct: 399 FVGGNPTLPVYRGEIQCRGLGMAVEAFDE------EGKPVIGEVGELVCTKPFPSMPLYF 452
Query: 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 622
D + + + YF + G+ RHGD IK T G +I+ GR+D T+N GG++
Sbjct: 453 WNDPD---GSRYRDAYFD---TFPGVW--RHGDWIKITPHGGVIIYGRSDATLNPGGVRI 504
Query: 623 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 682
+ EI RV ++ E + ++ + G E + +FV L++G T +K I AI+
Sbjct: 505 GTAEIYRVVEKIPE-VEDSLVVGQEVDDGD-ERMPLFVKLREGVTLDDALVKRI-RSAIR 561
Query: 683 SKLNPLFKVSLVKVVPEFPRTASNK 707
+ L+P + + VP+ P T S K
Sbjct: 562 AALSPRHVPAEIIAVPDIPYTLSGK 586
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 3e-56
Identities = 188/686 (27%), Positives = 279/686 (40%), Gaps = 117/686 (17%)
Query: 81 GPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIAL 140
G PL W PS ++ + + + L + +++VE EA+W+
Sbjct: 2 GDPL-WTPSAERIAASRMTAFIR-----WLAARRGLSFDDYAALWRWSVEDLEAFWQSVW 55
Query: 141 KEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIV-WRE 199
V+ +L + G W PG+ LN AE L R + D+ AI+ E
Sbjct: 56 DFFGVIGSTPYTVVLA--GRRMPGARWFPGARLNYAENLL-----RHRRDDRPAIIFRGE 108
Query: 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGY 258
D +++ ELR QV +A AL + GD +A +P V+ LA G
Sbjct: 109 DGPRRE----LSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGA 164
Query: 259 VVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAP--LKAIV 313
+ S + F + + R + K + D GG+ F +KV A P +V
Sbjct: 165 IWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVV 224
Query: 314 LPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA 373
+P +G L W+DFL+ + PV P D + IL+SSGTTG PK
Sbjct: 225 VPYLGPAAAAAALPGALLWEDFLA--PAEAAELEFEPV--PFDHPLWILYSSGTTGLPKC 280
Query: 374 IP-------WTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLA 426
I L + H DL GD + W T GW+M L S L GATL
Sbjct: 281 IVHGHGGILLEHLKELGL------HCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLV 333
Query: 427 LYQGSP----LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-------EGLDWTKIRS 475
LY GSP + + GVTV GT + A C E D + +R+
Sbjct: 334 LYDGSPFYPDPNVLW-DLAAEEGVTVFGTSAKYLDA-----CEKAGLVPGETHDLSALRT 387
Query: 476 FASTGE----------TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG 525
STG +V D+WL+S I GGT++ S ++ G+ L P G
Sbjct: 388 IGSTGSPLPPEGFDWVYEHVKADVWLAS-------I--SGGTDICSCFVGGNPLLPVYRG 438
Query: 526 AFSTATMTAGLVILDECGVPYPDDQPCVGEVG-L--------FPLYL-----GASDRLLN 571
+ + DE G +P VGEVG L PL G+ R +
Sbjct: 439 EIQCRGLGMAVEAWDEDG------RPVVGEVGELVCTKPFPSMPLGFWNDPDGS--RYRD 490
Query: 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 631
A YF + G + RHGD I+ T G +++ GR+D T+N GG++ + EI R
Sbjct: 491 A-----YFD---TFPG--VWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQV 540
Query: 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
+ E +L++ I G + +FVVL +G T I I++ L+P
Sbjct: 541 EALPE-VLDSLVIGQEWPDGDVRM-PLFVVLAEGVTLDDALRARI-RTTIRTNLSPRHVP 597
Query: 692 SLVKVVPEFPRTASNKLL----RRVL 713
+ VP+ PRT S K + +++L
Sbjct: 598 DKIIAVPDIPRTLSGKKVELPVKKLL 623
|
Length = 655 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 3e-51
Identities = 129/536 (24%), Positives = 199/536 (37%), Gaps = 69/536 (12%)
Query: 210 MTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY+EL + +A AL + GD +AI +P + +I +LA + AG V V +
Sbjct: 39 LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+A L + AK + T L V A P+ +VL D +P+ +
Sbjct: 99 PRELAYILNDAGAKVLITSA------EFAALLEAVAEALPVVLVVLLVGDADDRLPITLE 152
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-- 386
L P P+ + +P D +L++SGTTG PK + T + + A
Sbjct: 153 AL--------AAEGPGPDADARPVDPDDLAF-LLYTSGTTGLPKGVVLTHRNLLANAAGI 203
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLE-RSFGKFVQDA 444
L DV L + G V L + L G TL L P + ++
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKY 263
Query: 445 GVTVLGTVPSLVKAWRNT-NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503
VTVL VP+ ++ + + + +R S G + + AI+E
Sbjct: 264 KVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEG 323
Query: 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP----------DDQPCV 553
G TE S + L G P P +
Sbjct: 324 YGLTETS--------------PVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP 369
Query: 554 GEVG--------LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 605
GEVG + Y + A E+ + R GD+ GY+
Sbjct: 370 GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRT------------GDLGYVDEDGYL 417
Query: 606 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 665
+ GR D + GG EIE V + + E A + V G E +V VVLK G
Sbjct: 418 YIVGRLKDLIISGGENIYPEEIEAVLAEHPA-VAEAAVVGVPDERWG-ERVVAVVVLKPG 475
Query: 666 FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721
++ ++ ++ +L +V V E PRTAS K+ RR LR++ + E
Sbjct: 476 GDAELTAEELR--AFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEP 529
|
Length = 534 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 2e-49
Identities = 175/660 (26%), Positives = 287/660 (43%), Gaps = 111/660 (16%)
Query: 118 ITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPK-CILDRTDKSKHGGTWLPGSVLNIA 176
+ ++ + ++E P+ +W +E+ F+ K K W G LN++
Sbjct: 4 LEQYKELYEESIEDPDKFWAKLARELLDWFKPFTKVLDWSFPPFYK----WFVGGELNVS 59
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
C+ H + VAI+W D + V +TY+EL +V AN L ++ KGD
Sbjct: 60 YNCV--DRHLEARPDKVAIIWEGD--EPGEVRKITYRELHREVCRFANVLKSLGVKKGDR 115
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+AI MPM A I LA G + + F+A +A R+ + AK + T D LRGG+
Sbjct: 116 VAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGK 175
Query: 296 KFPLYSKV---LGAAPL---KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 349
PL + V L P+ +V+ GN V + +D+ W D ++ Y
Sbjct: 176 VIPLKAIVDEALEKCPVSVEHVLVVRRTGNPV-PWVEGRDVWWHDLMAKA-----SAYCE 229
Query: 350 PVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHI------DLKVGD 398
P P+D+ + IL++SG+TG+PK + + T G +A + D+K GD
Sbjct: 230 P--EPMDSEDPLFILYTSGSTGKPKGV-------LHTTG-GYLLYAAMTMKYVFDIKDGD 279
Query: 399 VYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVP 453
++ W T ++GW+ G I++ NGAT +++G+P G+F ++ VT+ T P
Sbjct: 280 IF-WCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAP 338
Query: 454 SLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507
+ ++A G +W K +R S GE N + W+ WY ++ G
Sbjct: 339 TAIRALMR----LGDEWVKKHDLSSLRLLGSVGEPIN--PEAWM----WYYKVV---GKE 385
Query: 508 E--LSSAYIQ---GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGE 555
+ + Q G ++ GA T +A L ++DE G + GE
Sbjct: 386 RCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEG----NPVEGPGE 441
Query: 556 VGLFPLYLGASD------RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYII 606
G YL R + DHE + YF + G GD +R GYI
Sbjct: 442 GG----YLVIKQPWPGMLRTIYGDHERFVDTYF---SPFPGYYFT--GDGARRDKDGYIW 492
Query: 607 VQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF 666
+ GR DD +N+ G + + EIE + ++ E A + + G + + FV LK G+
Sbjct: 493 ITGRVDDVINVSGHRLGTAEIESAL-VSHPAVAEAAVVGIPDDIKG-QAIYAFVTLKDGY 550
Query: 667 TSQPD---KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 723
+ +L+ K I P+ K ++ VP P+T S K++RR+LR E +
Sbjct: 551 EPDDELRKELRKHVRKEI----GPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGEEEI 606
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 3e-48
Identities = 166/617 (26%), Positives = 256/617 (41%), Gaps = 55/617 (8%)
Query: 124 FQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPS 183
+++V+ + +W+ + V F ++D D++ G W PG+ LN AE
Sbjct: 40 LHRWSVDELDTFWKAVWEWFDVRFSTPCARVVD--DRTMPGAQWFPGARLNYAE------ 91
Query: 184 NHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242
N R A+++ D E A +T+ ELR QV +A AL + GD ++ +P
Sbjct: 92 NLLRAAGTEPALLYV-DETHEPAP--VTWAELRRQVASLAAALRALGVRPGDRVSGYLPN 148
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
+AV+ LA G + S + F AR + R + + K +FT D G++ K
Sbjct: 149 IPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDK 208
Query: 303 VL----GAAPLKAIVL-PAIGNDVGI-PLREQDLSWKDFLSSVDYHPRPNYYSPVYN--P 354
V L+A+V P +G P + L +DF ++ V+ P
Sbjct: 209 VAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAE------LVFEQLP 262
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 413
D + ILFSSGTTG PK I + + ++ E H DL GD + T GW+M
Sbjct: 263 FDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWN- 321
Query: 414 ILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGL 468
L S GATL LY GSP + G T+ GT V A R
Sbjct: 322 WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTH 381
Query: 469 DWTKIRSFASTGETSNVDDDLWL----SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 524
D + ++ ASTG D W+ + W +I GGT++ S + + P
Sbjct: 382 DLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASI---SGGTDICSCFAGANPTLPVHI 438
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN----ADHEEVYFR 580
G + + D G P + VGE+ R N + + + YF
Sbjct: 439 GEIQAPGLGTAVQSWDPEGKPVTGE---VGELVCTNPMPSMPIRFWNDPDGSKYRDAYFD 495
Query: 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640
P + RHGD I T G I++ GR+D T+N G++ S EI ++ DE + E
Sbjct: 496 TYPG-----VWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDE-VRE 549
Query: 641 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEF 700
+ I GG +V+FV L G T L I + I++ L+P + VP
Sbjct: 550 SLCIGQEQPDGG-YRVVLFVHLAPGATLDDALLDRI-KRTIRAGLSPRHVPDEIIEVPGI 607
Query: 701 PRTASNKLLRRVLRDQI 717
P T + K + ++ +
Sbjct: 608 PHTLTGKRVEVAVKRVL 624
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 4e-46
Identities = 104/434 (23%), Positives = 163/434 (37%), Gaps = 48/434 (11%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY+EL E+ +A AL + GD +AI +P + V+ LA++ AG V + S A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
+A L S+AK + T D L K+L ++L I +
Sbjct: 61 ERLAYILEDSEAKVLITDD---------ELLPKLLEVLLKLLVLLALIIVGDDGEGLDLL 111
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 389
+S + P P D + I+++SGTTG+PK + T + + A
Sbjct: 112 DDELLAGASAEPPAPPV--DP-----DDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLA 164
Query: 390 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTV 448
L GD L + +F L G TL L L+ ++ VTV
Sbjct: 165 ERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTV 224
Query: 449 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508
L VP+L++ + D + +R S GE + L + ++ G TE
Sbjct: 225 LYGVPTLLRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTE 284
Query: 509 LSSAYIQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPDDQPCVGEV----- 556
+ G + G + +LDE G P P VGE+
Sbjct: 285 TTVVATA------NLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPPG--EVGELCIRGP 336
Query: 557 GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN 616
G+ YL + E + G + R GD+ + GY+ + GR DD +
Sbjct: 337 GVARGYLNDPEL-----TAERFVED-----GWGMYRTGDLGRWDEDGYLEILGRKDDQVK 386
Query: 617 LGGIKTSSVEIERV 630
+ G + EIE V
Sbjct: 387 IRGERIEPGEIEAV 400
|
Length = 412 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 3e-45
Identities = 184/660 (27%), Positives = 280/660 (42%), Gaps = 135/660 (20%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL---LP 182
K ++E PE +W +E+ F+ K +LD + W G LN + CL L
Sbjct: 2 KESIEDPEEFWAEQAEELDW-FKPWDK-VLD--WSNPPFAKWFVGGKLNASYNCLDRHLK 57
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMP 241
+ N VAI+W + DES +TY+EL +V AN L ++ KGD +AI MP
Sbjct: 58 AGRG----NKVAIIWEGEPGDESRT--ITYRELYREVCRFANVLKSLGVKKGDRVAIYMP 111
Query: 242 MTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 292
M I LA ++ AG F+A +A R+ +K+K + T D R
Sbjct: 112 MIPELPIAMLACARIGAIHSVVFAG---------FSAEALADRINDAKSKLLITADGGYR 162
Query: 293 GGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRPN 346
GG+ PL V L P K IV+ G +V P+ E +D+ W D ++
Sbjct: 163 GGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEV--PMVEGRDVWWHDLMAKA-----SP 215
Query: 347 YYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAH------IDLK 395
Y P P+DA + IL++SG+TG+PK + T L +A D+
Sbjct: 216 YCEPE--PMDAEDPLFILYTSGSTGKPKGVVHTTGGYLV--------YAATTFKYVFDIH 265
Query: 396 VGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLG 450
DVY W T ++GW+ G I++ NGAT +Y+G+P G++ V+ VT+
Sbjct: 266 PDDVY-WCTADIGWITGHSYIVYGPLANGATTVMYEGAPDYPDPGRWWEIVEKYKVTIFY 324
Query: 451 TVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAII--E 502
T P+ ++ G +W K +R S GE N + W+ WY +I E
Sbjct: 325 TAPTAIRMLMR----FGDEWPKKHDLSSLRLLGSVGEPINPE--AWM----WYYEVIGKE 374
Query: 503 SCGGTELSSAYIQ----GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQP 551
C + + Q G ++ P GA +A I+DE G
Sbjct: 375 RC---PIVDTWWQTETGGHMITPLP-GATPLKPGSATRPFPGVEPAIVDEEGNEVEG--- 427
Query: 552 CVGEVGLFPLYLGASD------RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVG 602
G G YL R + DHE + YF + G GD +R
Sbjct: 428 --GVEG----YLVIKRPWPGMLRTIYGDHERYVKTYFS---KFPGYYFT--GDGARRDED 476
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIER--VCDQADESILETAAISVSPAGGGPEVLVIFV 660
GY + GR DD +N+ G + + E+E V + ++ E A + G E + FV
Sbjct: 477 GYYWILGRVDDVINVSGHRLGTAEVESALV---SHPAVAEAAVVGKPDEVKG-EAIYAFV 532
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720
LK G D+L+ K ++ ++ P+ + VP P+T S K++RR+LR E
Sbjct: 533 TLKDGVEP-SDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMRRILRKIAAGE 591
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 3e-39
Identities = 166/629 (26%), Positives = 271/629 (43%), Gaps = 77/629 (12%)
Query: 130 EHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189
+ PEA+W I + + + +LD ++ W G LN+ + R E
Sbjct: 1 KEPEAFWAEQANLID--WYKPWEKVLDNSNPPFT--RWFVGGRLNLCYNAV----DRHIE 52
Query: 190 D---NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
D + +A+++ D TY EL ++V +A L + KGD + I MPM
Sbjct: 53 DGRGDQIALIY--DSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPE 110
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
AVI LA G + + FA++E+A+R+ +K K I T F + GR P Y +L
Sbjct: 111 AVIAMLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVP-YKPLLD 169
Query: 306 AA-------PLKAIVLPAIGNDVGIPLR-EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA 357
A P K ++L V PL+ +DL W + ++ V PV++
Sbjct: 170 KALELSQHKPHKVLILNR--GQVPAPLKPGRDLDWAELMAKARPVD------CV--PVES 219
Query: 358 V--VNILFSSGTTGEPKAIPWTQLSSIR-----CTAEGWA--HI-DLKVGDVYCWPTNLG 407
+ IL++SGTTG+PK + +R A W+ +I +K GDV+ +++G
Sbjct: 220 TDPLYILYTSGTTGKPKGV-------VRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVG 272
Query: 408 WVMG-PVILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTVPSLVKAWR-- 460
WV+G I++ L+GAT LY+G P+ ++ + +++ GV L T P+ ++A R
Sbjct: 273 WVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQ 332
Query: 461 --NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI---Q 515
+ ++ D + +R+ GE + W+ K +I+ TE
Sbjct: 333 DPDGEYIKKYDLSSLRALFLAGERLDSPTLEWIE-KTLGVPVIDHWWQTETGWPITANCV 391
Query: 516 GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADH 574
G L P G+ + +LDE G +G + + PL G L D
Sbjct: 392 GLELLPIKPGSPGKPVPGYDVQVLDETGEELGPG--ELGNIVIKLPLPPGCLLTLWG-DD 448
Query: 575 E---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 631
E ++Y P Y GD + GY+ V GR DD +N+ G + S+ E+E
Sbjct: 449 ERFKKLYLNKFPGY-----YDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESV 503
Query: 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
+ E A + V G +V + VVLK D+L+ ++ ++ P+
Sbjct: 504 -LKHPDVAECAVVGVRDELKG-QVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAF 561
Query: 692 SLVKVVPEFPRTASNKLLRRVLRDQIKHE 720
V V P+T S K+LRR LR E
Sbjct: 562 RNVVFVKRLPKTRSGKILRRTLRKIADGE 590
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 6e-39
Identities = 97/363 (26%), Positives = 147/363 (40%), Gaps = 47/363 (12%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSF 419
IL++SGTTG+PK + + + + I L GDV L V+G L +
Sbjct: 5 ILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLGAL 64
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L G T+ LY+G P SF + ++ VTVL VP+L A G D + +R S
Sbjct: 65 LAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLRLLISG 124
Query: 480 GETSNVDDDLWLSSKAWYNA-----IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 534
GE L + I+E G TE S + + G T
Sbjct: 125 GEP------LSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPG-------TV 171
Query: 535 GLVILD-ECGVPYPDDQPC-VGEVG--------LFPLYLGASDRLLNADHEEVYFRGMPM 584
G + E V + +P GEVG + Y A E+ ++R
Sbjct: 172 GRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYR---- 227
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
GD+ GY+ + GR+ D + +GG E+E V Q ++ E A +
Sbjct: 228 --------TGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQH-PAVAEAAVV 278
Query: 645 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA 704
V P E +V FVVL+ G + ++LK ++ +L P +++ V E P+TA
Sbjct: 279 GV-PDEDRGERIVAFVVLRPGADALAEELK----AHLRERLAPYKVPRVIEFVDELPKTA 333
Query: 705 SNK 707
S K
Sbjct: 334 SGK 336
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 5e-35
Identities = 190/693 (27%), Positives = 283/693 (40%), Gaps = 170/693 (24%)
Query: 112 RAYKDPITSFRLFQKFTVEHPEAYW-EIALKEIS------VVFREAPKCILDRTDKSKHG 164
A D L+Q+ +VE PE +W E A K + V I
Sbjct: 11 NALIDMEQYKALYQE-SVEDPEGFWAEQA-KRLDWFKPFDTVLDWNAPFI---------- 58
Query: 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224
W LN++ CL H + + VAI+W D +S +TY+EL +V AN
Sbjct: 59 -KWFEDGELNVSYNCL--DRHLKTRGDKVAIIWEGDDPGDSRK--ITYRELHREVCRFAN 113
Query: 225 ALDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIAT 274
AL ++ KGD +AI MPM A + LA ++ G F+A +A
Sbjct: 114 ALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGG---------FSAEALAD 164
Query: 275 RLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-Q 328
R+ + AK + T D +RGG+ PL + V L P K IV+ G DV E +
Sbjct: 165 RIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDV--DWVEGR 222
Query: 329 DLSWKDFLSSV-DYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCT 385
DL W + ++ D P P+DA + IL++SG+TG+PK + T T
Sbjct: 223 DLWWHELVAGASDECE------PE--PMDAEDPLFILYTSGSTGKPKGVLHT-------T 267
Query: 386 AEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQG---S 431
G +A + D K GDVY W T ++GWV G I++ NGAT +++G
Sbjct: 268 G-GYLVYAAMTMKYVFDYKDGDVY-WCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNY 325
Query: 432 PLERSFGKFVQDAGVTVLGTVP----SLVKAWRNTNCLEGLDWTKIRSFAS------TGE 481
P F + + VT+ T P +L+K EG + K +S GE
Sbjct: 326 PDPGRFWEVIDKHKVTIFYTAPTAIRALMK--------EGDEHPKKYDLSSLRLLGSVGE 377
Query: 482 TSNVDDDLWLSSKAWYNAII--ESC-----------GGTELSSAYIQGSLLQPQAFGAFS 528
N + W WY ++ E C GG ++ P GA
Sbjct: 378 PIN--PEAWE----WYYKVVGGERCPIVDTWWQTETGGIMITPL--------P---GATP 420
Query: 529 TATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASD------RLLNADHE 575
+A ++DE G P GE G L D R + DHE
Sbjct: 421 LKPGSATRPLPGIQPAVVDEEGNPLEG-----GEGG----NLVIKDPWPGMMRTIYGDHE 471
Query: 576 ---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER--V 630
+ YF +KGM GD +R GY + GR DD +N+ G + + EIE V
Sbjct: 472 RFVKTYF---STFKGMYFT--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 526
Query: 631 CDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFK 690
A + E A + G + + FV LK G D+L+ ++ ++ P+ K
Sbjct: 527 ---AHPKVAEAAVVGRPDDIKG-QGIYAFVTLKGGEEPS-DELRKELRNWVRKEIGPIAK 581
Query: 691 VSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 723
+++ P P+T S K++RR+LR + E +
Sbjct: 582 PDVIQFAPGLPKTRSGKIMRRILRKIAEGEEIL 614
|
Length = 637 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 6e-31
Identities = 155/627 (24%), Positives = 263/627 (41%), Gaps = 61/627 (9%)
Query: 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECC 179
+ F + ++E PEA+W + I ++ P+ ILD + W G N+ C
Sbjct: 2 RYEEFYQRSIEQPEAFWAEQARRID--WQTPPQRILD--YSNPPFARWFAGGRTNL--CH 55
Query: 180 LLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238
H + +A+V + +TY++L +V + A+AL + +GD + I
Sbjct: 56 NALDRHLDERGEQLALVTVSSETGQERT--LTYRQLHREVNVFASALRALGVGRGDRVLI 113
Query: 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP 298
MPM AV LA G + + FA+ +A R+ + K I + D +RGG+ P
Sbjct: 114 YMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIP 173
Query: 299 LYSKVLGAAPLKAIVLPA--IGNDVGI-PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV 355
Y +L AA +A P + D G+ P+R + +D VDY + PV
Sbjct: 174 -YKPLLDAAIAEAQHPPPHVLLVDRGLAPMRL--IPGRD----VDYAALRTQHEDAQVPV 226
Query: 356 DAVVN-----ILFSSGTTGEPKAIPW-TQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 409
+ + + IL++SGTTG+PK + ++ WA ++ G V +++GWV
Sbjct: 227 EWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWV 286
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERSFG---KFVQDAGVTVLGTVPSLVKAWR--NTN 463
+G I+++ L GA LY+G P G V+ GV + + P+ ++ + +
Sbjct: 287 VGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA 346
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELS---SAYIQGSLLQ 520
L D + + GE + W++ +I++ TE A + G L+
Sbjct: 347 WLRKHDLSSLHWLFLAGEPLDEPTAHWITD-GLGKPVIDNYWQTETGWPVLAIMPGLDLK 405
Query: 521 PQAFGAFSTATMTAGLVILDECGVPYPDDQPC-VGEVGLF----PLYLGASDRLLNADHE 575
P G+ L +LDE +PC E G+ PL G + D
Sbjct: 406 PVKLGSPGLPMYGYHLRVLDEA-----TGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDAR 460
Query: 576 EV--YFRGM--PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 631
+ Y+ P+Y D R GY + GR DD +N+ G + + EIE
Sbjct: 461 FLKTYWSHFKRPLYSSF------DWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESV 514
Query: 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ----SKLNP 687
+ S+ E A + V G +V V+F +LK+ ++ + +L
Sbjct: 515 -SSHPSVAEVAVVGVHDELKG-QVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGA 572
Query: 688 LFKVSLVKVVPEFPRTASNKLLRRVLR 714
+ + + V V P+T S KLLRR ++
Sbjct: 573 VARPARVYFVAALPKTRSGKLLRRSIQ 599
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 5e-29
Identities = 168/653 (25%), Positives = 260/653 (39%), Gaps = 108/653 (16%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVF------REAPKCI--LDRTDKSKHGGTWLPGSV 172
+ K +V+ P +W +I+ F C LD K W G
Sbjct: 32 YMEMYKRSVDDPAGFWS----DIASQFYWKQKWEGDEVCSENLDVR-KGPISIEWFKGGK 86
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
NI CL N + +AI W + + +TY EL ++V +AN L +
Sbjct: 87 TNICYNCL-DRNVEAGNGDKIAIYWEGN--EPGFDASLTYSELLDRVCQLANYLKDVGVK 143
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
KGDA+ I +PM + I LA G V + F+A +A R+ K K + T + +
Sbjct: 144 KGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVK 203
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAI------GNDVGIPL---------RE-------QD 329
RG K + LK IV A+ G VGI L RE +D
Sbjct: 204 RG-------PKTI---NLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRD 253
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAV-----VNILFSSGTTGEPKAIPWTQLSSIRC 384
+ W+D + PNY P V+ V + +L++SG+TG+PK + T +
Sbjct: 254 VWWQDVV--------PNY--PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVY 303
Query: 385 TAEGWAH-IDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK--- 439
TA + + D K DVY + GW+ G + + LNGAT+ +++G+P G+
Sbjct: 304 TATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWD 363
Query: 440 FVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGETSN----------VDD 487
V VT+ T P+LV++ + +R S GE N V D
Sbjct: 364 IVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGD 423
Query: 488 DLWLSSKAWYNAIIESCGG---TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGV 544
S W+ GG T L A+ PQ G+ + VI+DE G
Sbjct: 424 SRCPISDTWWQT---ETGGFMITPLPGAW-------PQKPGSATFPFFGVQPVIVDEKGK 473
Query: 545 PYPDDQPCVGEVGLFPLYLGASDRLLNADH---EEVYFRGMPMYKGMCLRRHGDIIKRTV 601
+ C G + + + GA R L DH E YF+ Y GD R
Sbjct: 474 EI--EGECSGYLCVKKSWPGAF-RTLYGDHERYETTYFKPFAGY-----YFSGDGCSRDK 525
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 661
GY + GR DD +N+ G + + E+E + E A + + G + FV
Sbjct: 526 DGYYWLTGRVDDVINVSGHRIGTAEVESAL-VSHPQCAEAAVVGIEHEVKGQGIYA-FVT 583
Query: 662 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714
L +G ++L+ +++++ + P P+T S K++RR+LR
Sbjct: 584 LVEG-VPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 635
|
Length = 666 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 9e-25
Identities = 146/587 (24%), Positives = 225/587 (38%), Gaps = 118/587 (20%)
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD 227
LP + A RR D A V+ + R +TY EL +V A AL
Sbjct: 7 LPELLARAA---------RRFGDKE-AYVFGDQR--------LTYAELNARVRRAAAALA 48
Query: 228 TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286
+ KGD +AI P + VI L + AG VVV + + A E A L AK +F
Sbjct: 49 ALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFV 108
Query: 287 QDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
L + P L+ +V+ D P E+ ++ DFL++ D P
Sbjct: 109 LGLFL------GVDYSATTRLPALEHVVICETEEDD--PHTEKMKTFTDFLAAGD----P 156
Query: 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGD------ 398
+P +P D V +ILF+SGTTG PK T + A WA L GD
Sbjct: 157 AERAPEVDP-DDVADILFTSGTTGRPKGAMLTHRQLLS-NAADWAEYLGLTEGDRYLAAN 214
Query: 399 ----VYCWPTNLGWVMGPVILFSSFLNGAT-LALYQGSPLERSFGKFVQDAGVTVLGTVP 453
V+ + + + + GAT L L P + F + ++ +TVL P
Sbjct: 215 PFFHVFGY---------KAGVNAPLMRGATILPLPVFDP-DEVF-RLIETERITVLPGPP 263
Query: 454 SLVKAWRNTNCLEGLDWTKIRSFASTGETS-------NVDDDLWLSSKAWYNAIIESCGG 506
++ + D + +R A TG S + +L + ++ G
Sbjct: 264 TMYNSLLQHPDRSAEDLSSLR-LAVTGAASMPVALLERFESELGVDI------VLTGYGL 316
Query: 507 TELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQPCVGEVGLFPLYLG 564
+E S L + A + T AG I++E G P VGEVG
Sbjct: 317 SEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVP-----VGEVG------- 364
Query: 565 ASDRLLNADHEEVYFRG---------MPMYKGMCLRRHG-----DIIKRTVGGYIIVQGR 610
E+ RG P + G D+ + GY+ + R
Sbjct: 365 -----------ELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDR 413
Query: 611 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP 670
D +GG E+E V + ++ E A I V G EV +VVLK G
Sbjct: 414 KKDMFIVGGFNVYPAEVEEVLYEHP-AVAEAAVIGVPDERLG-EVGKAYVVLKPGAELTE 471
Query: 671 DKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQ 716
++L + + + +K +KV ++ + E P+ A+ K+L+R LR++
Sbjct: 472 EEL-IAYCREHLAK----YKVPRSIEFLDELPKNATGKVLKRALREK 513
|
Length = 513 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-24
Identities = 126/543 (23%), Positives = 191/543 (35%), Gaps = 137/543 (25%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E A L KGD +A+ +P + I Y I+ AG VVV + +
Sbjct: 25 LTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYT 84
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ +L S AK +
Sbjct: 85 PRELEHQLNDSGAKVLIV------------------------------------------ 102
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTA 386
+S++D L+S P PV D + + ++ GTTG PK T L +
Sbjct: 103 AISFEDALASGAPLP-----LPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQI 157
Query: 387 EGWAHIDLKVGD----------VYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERS 436
W + D ++ N + GAT L + +
Sbjct: 158 AAWVKDLREGEDRFLTALPLFHIFGLTVN---------MLLGLRLGATNVLVP-NFRPIN 207
Query: 437 FGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 496
K ++ T+ VP+L A N + D++ +R S G V+ ++ +
Sbjct: 208 VLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVE-----VAERF 262
Query: 497 ---YNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV-------ILDECGVP 545
A ++E G TE S L + G + GL I+D+ G
Sbjct: 263 EEKTGAPLVEGYGLTETSPVTTVNPLDGERKPG-------SIGLPLPGTEVKIVDDEGNE 315
Query: 546 YPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG---MPMYKGM------CLR----R 592
P GEVG E+ RG M Y L R
Sbjct: 316 LPP-----GEVG------------------ELVVRGPQVMKGYWNRPEETAEVLTDGWLR 352
Query: 593 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652
GDI GY + R D + +GG EIE V + ++LE A + V P
Sbjct: 353 TGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVL-YSHPAVLEAAVVGV-PDPYR 410
Query: 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRR 711
E + FVVLK+G + ++L + F + +L +KV V+ E P++A K+LRR
Sbjct: 411 GEAVKAFVVLKEGASLTEEEL-IAFCR---ERLAA-YKVPRQVEFRDELPKSAVGKILRR 465
Query: 712 VLR 714
LR
Sbjct: 466 ELR 468
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 112/536 (20%), Positives = 189/536 (35%), Gaps = 95/536 (17%)
Query: 210 MTYKELREQVMLVANALDTMFS-KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ +L ++ + +A L + +GD +A+ P ++ ++L + AG +V + S+
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-----KAIVLPAIGNDVGI 323
E+A +L++SK K IF KV AA + IVL + + V
Sbjct: 71 PDELAHQLKISKPKLIFCDP---------DELDKVKEAAKELGPVVRIIVLDSAPDGVLR 121
Query: 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 383
+D L +P+ + D +L+SSGTTG PK + LS
Sbjct: 122 I--------EDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGV---MLSHKN 170
Query: 384 CTA------EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSF 437
A + DV G +S L GAT+ + E +F
Sbjct: 171 IIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSE-TF 229
Query: 438 GKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497
K ++ VT L VP + A + ++ D + +R S + + L +
Sbjct: 230 LKLIEKYKVTSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPN 289
Query: 498 NAIIESCGGTELSSAYIQGSLLQPQAFGAF-STATMTAGLV--ILDECGVPYPDDQPCVG 554
I + G TE A + L P S + + I+DE G
Sbjct: 290 TTIKQGYGMTETGPA----TTLTPPGDEKPGSVGRLVPNVEAKIVDEDG----GKSLGPN 341
Query: 555 EVGLFPLYLGASDRLLNADHEEVYFRG---MPMY-------KGMCLR----RHGDIIKRT 600
E G E+ +G M Y K GDI
Sbjct: 342 ERG------------------ELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFD 383
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
G + R + + G + E+E V + + + + A I + G E+ +V
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPK-VADAAVIGIPDEVAG-ELPRAYV 441
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK-------VVPEFPRTASNKLL 709
VLK G + + ++ + KV+ K V E P++ S K+L
Sbjct: 442 VLKPG--------SKLTEQEVKDYVAK--KVAKYKQLRGGVVFVDEIPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-21
Identities = 156/660 (23%), Positives = 263/660 (39%), Gaps = 125/660 (18%)
Query: 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK--SKHGGTWLPGSVLNIA 176
S+ F + +++ PEA+W + I ++ +LD ++ ++ W G N+
Sbjct: 2 MSYSEFYQRSIDDPEAFWAEQARRID--WQTPFTQVLDYSNPPFAR----WFVGGRTNLC 55
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
+ H K +A++ DE T+++L ++V +A L ++ +GD
Sbjct: 56 HNAV--DRHLAKRPEQLALIAVSTETDEERT--YTFRQLHDEVNRMAAMLRSLGVQRGDR 111
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+ I MPM A LA G + + FA+ +A R+ +K I + D RGG+
Sbjct: 112 VLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGK 171
Query: 296 KFPLYSKVLGAAPLKAIVLPA---------------IGNDVGI-PLREQDLSWK---DFL 336
P Y +L A A P G DV LR Q L + ++L
Sbjct: 172 VVP-YKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQHLGARVPVEWL 230
Query: 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA------ 390
S + P+Y IL++SGTTG+PK + R T G+A
Sbjct: 231 ESNE----PSY-------------ILYTSGTTGKPKGVQ-------RDTG-GYAVALATS 265
Query: 391 --HI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFG---KFVQD 443
I K G+ + +++GWV+G I+++ L G +Y+G P G + V+
Sbjct: 266 MDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEK 325
Query: 444 AGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGE-----TSN---------VDD 487
V + + P+ ++ + + L D + +R+ GE T++ V D
Sbjct: 326 YKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVID 385
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP 547
+ W + W I+ G E +P G+ + +L+E
Sbjct: 386 NYWQTETGW--PILAIARGVE----------DRPTRLGSPGVPMYGYNVKLLNEV----- 428
Query: 548 DDQPC-VGEVGLF----PLYLGASDRLLNADHEEV--YFR--GMPMYKGMCLRRHGDIIK 598
+PC E G+ PL G + D V Y+ G +Y D
Sbjct: 429 TGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTF------DWGI 482
Query: 599 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658
R GY + GR DD +N+ G + + EIE + ++ E A + V A G +V V
Sbjct: 483 RDADGYYFILGRTDDVINVAGHRLGTREIEE-SISSHPAVAEVAVVGVKDALKG-QVAVA 540
Query: 659 FVVLKKGFTSQPDKLKMIFSKAI----QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714
FVV K + + ++ K I S+L + + + V V P+T S KLLRR ++
Sbjct: 541 FVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQ 600
|
Length = 629 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 6e-21
Identities = 116/540 (21%), Positives = 180/540 (33%), Gaps = 138/540 (25%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL + +A AL + GD +A +P V++YLA G V+ I +
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ LR ++A+ + +P
Sbjct: 62 ERELGFILRQARAR----------------------------VLFVPD------------ 81
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 385
++ F DY P D V +L++SGTTGEPK + T L+ +R
Sbjct: 82 --EFRGF----DYAAMP----------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSY 125
Query: 386 AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFG 438
E L DV P+ L + G FL G L L G+ +
Sbjct: 126 VERLG---LTPDDVVLMPSPLAHITG-------FLYGLELPLLLGATVVLQDRWDPARAL 175
Query: 439 KFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498
+ +++ GVT + G D +R F G V +L
Sbjct: 176 ELIREHGVTFTMGATPFLADLLAAADAAGPDLPSLRVFLCGGAP--VPREL--------- 224
Query: 499 AIIESC---GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP-------- 547
G ++ AY G P G P P
Sbjct: 225 --ARRAAEALGAKVVRAY--GMTEVPLVTVGTPDD---PDDKRAATDGRPVPGVEVRIVD 277
Query: 548 -DDQP----CVGEV-----GLFPLYLGASDRLLNADH--EEVYFRGMPMYKGMCLRRHGD 595
D GE+ LF LG D N + ++ +FR GD
Sbjct: 278 DDGNDVPPGEEGELQVRGPQLF---LGYLDPPDNTEAFTDDGWFRT------------GD 322
Query: 596 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655
+ + GY+ + GR D + GG S+ EIE + + ++ E A +++ G E
Sbjct: 323 LGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHP-AVAEVAVVAMPDERLG-ER 380
Query: 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715
+ VV G + +L + +K + L VV PRT S K+ + LR+
Sbjct: 381 VCAVVVPAPGASLTLAELTEHLAAQGLAK--QKWPERLE-VVDALPRTPSGKVQKFELRE 437
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 3e-20
Identities = 121/553 (21%), Positives = 181/553 (32%), Gaps = 159/553 (28%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY+EL V +A L + GD + + +P VI+Y A+ G + V +
Sbjct: 41 LTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHR 100
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A EI R S+AK D
Sbjct: 101 AHEIGHFARQSEAKAYIIAD---------------------------------------- 120
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 385
+ F DY + + V S GTTG PK IP T L S R +
Sbjct: 121 --RFSGF----DYAA---LARELLEELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARAS 171
Query: 386 AEGWAHIDLKVGDVYCWPTNLG--WVMGPVILFSSFLNGATLALYQ-GSPLERSFGKFVQ 442
AE +D G VY + + L + L G T+ L+ SP ++
Sbjct: 172 AE-ACGLD--PGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDV--AFPLIE 226
Query: 443 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502
VT VP+L+ W + D + +R
Sbjct: 227 REKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQV------------------------ 262
Query: 503 SCGGTELSSAYIQ------GSLLQPQAFGAFSTATMTAGLV------------------- 537
GG LS + G LQ Q FG M GLV
Sbjct: 263 --GGAPLSPELARRVEERLGCPLQ-QVFG------MAEGLVNYTRLDDPPDVIMRTQGRP 313
Query: 538 --------ILDECGVPYPDDQPCVGEVG--------LFPLYLGASDRLLNADHEEVYFRG 581
I+D+ G P P GEVG Y A + A ++ ++R
Sbjct: 314 ISPADEIRIVDDQGEPVPP-----GEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRT 368
Query: 582 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILET 641
GD+++ GY V GR D +N GG K S EIE + ++ +
Sbjct: 369 ------------GDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHP-AVADA 415
Query: 642 AAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEF 700
A + + G E + FVV + G +L+ ++ + FK+ ++VV
Sbjct: 416 AVVGMPDEVLG-ERICAFVVPRGGAAPTLAELR----AFLREQGLAKFKLPDRLEVVDSL 470
Query: 701 PRTASNKLLRRVL 713
P T K+ ++ L
Sbjct: 471 PLTPVGKVDKKAL 483
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 2e-19
Identities = 127/580 (21%), Positives = 217/580 (37%), Gaps = 101/580 (17%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
L I + + RK + A+ + R TY EL E+V +ANAL +
Sbjct: 6 LTIGR---ILRHGARKHPDKEAVYFDGRR--------TTYAELDERVNRLANALRALGVK 54
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFI 290
KGD +A+ + + Y A+ G V+ I EIA L ++ + + +F+
Sbjct: 55 KGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFV 114
Query: 291 LRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + +L P V+ G+ PL + +++ L++ + P
Sbjct: 115 -------PLLAAILPQLPTVRTVI-VEGDGPAAPLAPEVGEYEELLAA---AS-DTFDFP 162
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWT--QLSSIRCTAEGWAHIDLKVGDVY-----CWP 403
+ DA +L++SGTTG PK + + L W + L DVY +
Sbjct: 163 DIDENDAAA-MLYTSGTTGHPKGVVLSHRNLFLHSLAVCAW--LKLSRDDVYLVIVPMFH 219
Query: 404 TN-LGWVMGPVILFSSFLNGATLAL---YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAW 459
+ G P + + + GA + + L ++ VT VP++ +
Sbjct: 220 VHAWGL---PYL---ALMAGAKQVIPRRFDPENLL----DLIETERVTFFFAVPTIWQML 269
Query: 460 RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSL 518
+D++ +R G + + L K + +++ G TE S +
Sbjct: 270 LKAPRAYFVDFSSLRLVIYGG--AALPPALLREFKEKFGIDLVQGYGMTETSPV-VSVLP 326
Query: 519 LQPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQPCVGEV---------GLFPLY 562
+ Q G ++ +AG I+D+ G P D VGE+ G Y
Sbjct: 327 PEDQLPGQWTKRR-SAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQG----Y 381
Query: 563 LG---ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
A+ ++ L GD+ GY+ + R D + GG
Sbjct: 382 WNRPEATAETIDGGW---------------LHT-GDVGYIDEDGYLYITDRIKDVIISGG 425
Query: 620 IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK 679
E+E ++ E A I V G + VVLK G T +L+
Sbjct: 426 ENIYPRELEDALY-GHPAVAEVAVIGVPDEKWGERPVA-VVVLKPGATLDAKELR----A 479
Query: 680 AIQSKLNPLFKVSL-VKVVPEFPRTASNKLLRRVLRDQIK 718
++ +L FK+ + V E PRT+ K+L+RVLR+Q
Sbjct: 480 FLRGRLAK-FKLPKRIAFVDELPRTSVGKILKRVLREQYA 518
|
Length = 521 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 3e-19
Identities = 111/440 (25%), Positives = 173/440 (39%), Gaps = 67/440 (15%)
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA 357
L+ +L A L A+V+PA L DL +D S P+ D
Sbjct: 37 ELWEAMLAAIKLGAVVIPATTL-----LTPADL--RDRFS--RGKPKAIVADETR--ADD 85
Query: 358 VVNILFSSGTTGEPKAIPWTQLS---SIRCTAEGWAHIDLKVGDVYCWPTNLGWV-MGPV 413
+ + F+SGTTG PK + T +S T W I L+ GD++ ++ GW
Sbjct: 86 PILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMY-W--IGLQPGDIHLNISSPGWAKHAWS 142
Query: 414 ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPSLVKAWRN--TNCLEGLDW 470
F+ + GAT+ + R + ++ GVT P+ WR L D
Sbjct: 143 SFFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPT---VWRMFIQQDLAQYD- 198
Query: 471 TKIRSFASTGETSNVD-DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 529
++R S GE N + + KAW I + G TE ++A I S Q G+
Sbjct: 199 VRLREAVSAGEPLNPEVIERV--KKAWGLTIRDGYGQTE-TTAMIGNSPGQKVKPGSMGR 255
Query: 530 ATMTAGLVILDECGVPYPDDQPCVGEV---------GLFPLYLGASDRLLNADHEEVYFR 580
+V+LD+ G P GE+ GL Y+G ++ A Y
Sbjct: 256 PLPGYRVVLLDDEGKEIPVT---EGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYY-- 310
Query: 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640
R GD R GY+ GRADD + S E+E +LE
Sbjct: 311 -----------RTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESA-------LLE 352
Query: 641 TAAISVSPAGGGPE-----VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK 695
A++ + P+ V ++VLK G+ + +F+ ++ +L P ++ ++
Sbjct: 353 HPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAH-VRERLAPYKRIRRIE 411
Query: 696 VVPEFPRTASNKLLRRVLRD 715
V E P+T S K+ R LR
Sbjct: 412 FVGELPKTISGKIRRVELRK 431
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 8e-19
Identities = 84/384 (21%), Positives = 141/384 (36%), Gaps = 70/384 (18%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL----- 415
++++SG+TG+PK + T +I C + LG G +L
Sbjct: 104 VIYTSGSTGKPKGVVITH-RNI-CNF------------LRAEGAILGIRPGDRVLQFASI 149
Query: 416 ---------FSSFLNGATLALYQGSPLERS--FGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
F++ L G TL + R +F+ VTV PSL+ +
Sbjct: 150 AFDVSILEIFTTLLAGGTLVI--PPEELRLEDLAEFLNRLRVTVAHLTPSLLALLDPEDV 207
Query: 465 LEGLDWTKIRSFASTGET-SNVDDDLWLSSKAWYNAIIESCGGTE--LSSAYIQGSLLQP 521
+R+ GE D W + N G TE +++ + + +P
Sbjct: 208 ------PSLRTLILGGEACPQALVDRWSKPRRLLNT----YGPTEATVTATASRLTPGKP 257
Query: 522 QAFG-AFSTATMTAGLVILDECGVPYPDDQPCV--GEVGLFPLYLG----ASDRLLNADH 574
G T +LD PD +P V G VG L +G A L +
Sbjct: 258 VNIGRPLPNYTC----WVLD------PDLEPLVPIGAVG--ELCIGGPGVARGYLNRPEL 305
Query: 575 -EEVYFRG--MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 631
E + G + R GD+++ G + GR DD + + G + EIE V
Sbjct: 306 TAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVL 365
Query: 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
++ + + GG + LV F+ + +P + + ++ + P + V
Sbjct: 366 RALPGVVVAAVVLLLDDPGG--KQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMV 423
Query: 692 -SLVKVVPEFPRTASNKLLRRVLR 714
S+ + E P TAS K+ R+ LR
Sbjct: 424 PSVYVPLDELPLTASGKVDRKALR 447
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-18
Identities = 114/548 (20%), Positives = 203/548 (37%), Gaps = 110/548 (20%)
Query: 210 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
+TY++L + ++ + + +G+ I I +P +V + LA++LAG V V + +
Sbjct: 8 LTYRKLLTASLALSRLIKKLTKEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGE 67
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI--PLRE 327
+ + + + K + T R F L L+ +V+ G + LR
Sbjct: 68 EGLRSACKQAGIKTVIT-------SRAF------LEKLKLEGLVVLLEGVRIVYLEDLRA 114
Query: 328 QDLSWKD----FLSSVDYHPRPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQ---L 379
+ +S D FL++ P + D ILF+SG+ G PK + + L
Sbjct: 115 K-ISKADKLKAFLAA--KLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLL 171
Query: 380 SSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF-LNGATL--------ALYQG 430
++I A A IDL DV ++G + LF +F L L +Y
Sbjct: 172 ANIDQIA---AVIDLNTEDV---------LLGALPLFHAFGLTVTLLLPLLTGLRVVYYP 219
Query: 431 SPLE-RSFGKFVQDAGVTVLGTVPSLVKAW-RNTNCLEGLDWTKIRSFASTGETSNVDDD 488
+PL+ + + ++D T+L P+ ++ + RN + D++ +R G + +
Sbjct: 220 NPLDAKKIAELIRDYKATILCGTPTFLRGYARNAH---PEDFSSLR-LVVAG-AEKLPEA 274
Query: 489 LWLSSKAWYN----AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATM----TAGLVI-- 538
+ + I+E G TE S P + +T T G +
Sbjct: 275 T---RELFEEKFGIRILEGYGATECS----------PVI--SVNTPMGNKPGTVGRPLPG 319
Query: 539 LDECGVPYPDDQPC-VGEVGL--------FPLYLGASDR--LLNADHEEVYFRGMPMYKG 587
++ V + +GE GL YL ++ + + Y
Sbjct: 320 IEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWY--------- 370
Query: 588 MCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647
GDI K G++ + GR +GG S +E + + AA+ V
Sbjct: 371 ----DTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVP 426
Query: 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK 707
G E +V+ + P++L I +A L L + V E P S K
Sbjct: 427 DEKKG-EKIVLLTTTEDL---DPEELNAILREAG---LPNLAVPRKILHVDEIPLLGSGK 479
Query: 708 LLRRVLRD 715
R L+
Sbjct: 480 TDYRGLKK 487
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 4e-18
Identities = 123/530 (23%), Positives = 194/530 (36%), Gaps = 81/530 (15%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL+E+V NAL + + + + + + T + I G V V I
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LK-AIVLPAIGNDVGIPLRE 327
+ L S+A+ + + + + L P L+ IV+ G
Sbjct: 92 DDYRYYLNDSRARVLVISEELW------EVLKPALQKDPHLRHVIVVGGAGPGA------ 139
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
LS+ +++ S D + L+SSG+TG PK + + TAE
Sbjct: 140 --LSYAQLIATAAEELEAAATSA-----DDMAFWLYSSGSTGRPKGVVHLH-HDMLVTAE 191
Query: 388 GWAHIDLKV--GDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDA 444
+A L + DV L + G L+ GAT L P + ++
Sbjct: 192 AYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIERY 251
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIES 503
TV VP+L A D + +R S GE + ++ K + I++
Sbjct: 252 KPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEA--LPAEIGYRWKELFGLEILDG 309
Query: 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQPCVGEVGLFPL 561
G TE+ ++ +P A ++ G + ++DE G D GE+G
Sbjct: 310 IGSTEMLHIFLSN---RPGAVKYGTSGKPVPGYEVKLVDEDGEEVAD-----GEIG---- 357
Query: 562 YLGASDRLLNADHEEVYFRG---MPMY-----------KGMCLRRHGDIIKRTVGGYIIV 607
E++ RG Y G R GD R GY
Sbjct: 358 --------------ELWVRGDSSAAGYWNRREKTRETFVGEWTRT-GDKYYRDEDGYYWY 402
Query: 608 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 667
GR+DD + + GI S E+E ++LE A + G FVVLK G+
Sbjct: 403 CGRSDDMLKVSGIWVSPFEVED-ALLQHPAVLEAAVVGA-EDEDGLTKPKAFVVLKDGYQ 460
Query: 668 SQPDKLKMI--FSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLR 714
P+ + F K KL P +K ++ V E P+TA+ K+ R LR
Sbjct: 461 PSPELETELKDFVK---DKLAP-YKYPRWIEFVDELPKTATGKIQRFKLR 506
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-17
Identities = 91/376 (24%), Positives = 143/376 (38%), Gaps = 47/376 (12%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDV-YCWPT-NLGWVMG 411
D + L++SGTTG+PK + + AE +A + L+ GD + + +G
Sbjct: 91 DDIAYWLYTSGTTGKPKGVMHRHRDPL-TFAEAFARELLGLQPGDRIFSSSKLFFAYGLG 149
Query: 412 PVILFSSFLNGATLALYQGSPL-ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDW 470
+LF F GA+ L G P E + TVL VP+L +A + +
Sbjct: 150 NSLLFPLFS-GASAVLLPGWPTPEAVLDLLAR-HRPTVLFGVPALYRALLESGAGSAPLF 207
Query: 471 TKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFST 529
+R S GE + L I++ G TE+ +I P A +T
Sbjct: 208 RSVRLCVSAGE--ALPAGLAERWAEATGIEILDGIGSTEVLHIFISNR---PGAARPGTT 262
Query: 530 ATMTAG--LVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGM 582
G ++DE G P G++ L P Y ++ +
Sbjct: 263 GRPVPGYEARLVDESGREVPAGTV--GDLWVRGPSLAPGYWNLPEKTQRTLRDGWL---- 316
Query: 583 PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 642
R GD R G+ QGRADD + + G S +E+E + ++ E A
Sbjct: 317 ---------RTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGE-HPAVAEAA 366
Query: 643 AISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN---PLFKV-SLVKVVP 698
++V P G L FVV + G Q + + + L +K ++ +
Sbjct: 367 VVAV-PDEDGLVRLKAFVVPRPGEAIQQ-----LLERDLHRFLRERLAPYKCPRQIEFLD 420
Query: 699 EFPRTASNKLLRRVLR 714
PRTA+ KL R LR
Sbjct: 421 TLPRTATGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 5e-17
Identities = 89/377 (23%), Positives = 146/377 (38%), Gaps = 43/377 (11%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH----IDLKVGDVYCWPT-NLGWVM 410
D + +++SGTTG PK +P + A +A+ IDL+ DV+ W + GW
Sbjct: 88 DDLFAQMYTSGTTGLPKGVPV----PLNALAAFYAYMRYAIDLRDDDVF-WNIADPGWAY 142
Query: 411 G-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 469
G + G T +G + ++ GVT P+ +
Sbjct: 143 GLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAAR 202
Query: 470 WT-KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA-FGAF 527
K+R +S GE N + W + I + G TE L + G+
Sbjct: 203 IKLKLRVASSAGEPLNPEVVRWFQA-NLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSM 261
Query: 528 STATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM---PM 584
+ +LD+ G P D GE G + + +S L +F G P
Sbjct: 262 GLPLPGYRIAVLDDDGQPLAD-----GEPGQLAIDVASSPLL--------WFSGYWDDPE 308
Query: 585 YKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640
+ GD+++R GY GRADD + G + ++E ++ E
Sbjct: 309 KTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVES-ALLEHPAVAE 367
Query: 641 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAIQSKLNPLFKVSLVKVV 697
A + V G E++ FVVLK+G+ + +L++ K + + P V+ V
Sbjct: 368 AAVVGVPDPLRG-EIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYP----REVEFV 422
Query: 698 PEFPRTASNKLLRRVLR 714
P P+T S K+ R +LR
Sbjct: 423 PALPKTPSGKIQRFLLR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 7e-17
Identities = 121/558 (21%), Positives = 196/558 (35%), Gaps = 124/558 (22%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYL 251
+A+V+ + +TY EL E+ +A L GD +A+ + + V+ L
Sbjct: 4 IALVYGDRS--------LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAIL 55
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 311
AI+ AG V + ++ A +A L S A+ + T +
Sbjct: 56 AILKAGAAYVPLDPAYPAERLAFMLEDSGARVLLTDE----------------------- 92
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTG 369
L + + L ++ P VDA + ++++SG+TG
Sbjct: 93 ------------SLAPLARADQLPLVILEEELDAEDAGPPAPAVDADDLAYVMYTSGSTG 140
Query: 370 EPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 428
PK + +R + I L D + + L + ++ + LNG L L
Sbjct: 141 RPKGVAVPHRGVVRLVRNTNY--IALDPDDRFLQLSPLSFDASTFEIWGALLNGGRLVLI 198
Query: 429 QGSPLERS--FGKFVQDAGVTVLGTVPSLVK--AWRNTNCLEGLDWTKIRSFASTGETSN 484
L + + + GVTVL +L + L GL R G+ +
Sbjct: 199 DKETLLDPDRLARLIAEQGVTVLWLTAALFNQLVDEDPEALAGL-----RQLLVGGDVLS 253
Query: 485 VDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA-TMTAG-------- 535
A ++ +C G L + Y G P FST +T
Sbjct: 254 P---------AHVRRVLAACPGLRLINGY--G----PTENTTFSTCHVITRLDEAADSIP 298
Query: 536 ---------LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNA----DHEEVYF 579
+ ILDE G P P P VG GL YL + L A +
Sbjct: 299 IGRPIPNTTVYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPE--LTAERFVPDP--FG 354
Query: 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 639
G +Y R GD+ + G I GR D + + G + EIE+ Q +
Sbjct: 355 PGERLY------RTGDLARWRPDGNIEFLGRIDRQVKIRGFRIELGEIEQALLQHPG--V 406
Query: 640 ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN---PLFKV-SLVK 695
AA+ V G + LV +VV + + +++ L P + V +
Sbjct: 407 REAAVLVREDAAGDKRLVAYVVARGALDAA----------ELRAHLAERLPAYMVPAAFV 456
Query: 696 VVPEFPRTASNKLLRRVL 713
V+ E P TA+ K+ RR L
Sbjct: 457 VLDELPLTANGKVDRRAL 474
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 9e-17
Identities = 95/381 (24%), Positives = 150/381 (39%), Gaps = 43/381 (11%)
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 408
V + D + + F+SGTTG PK + T T W +DL+ D++ + GW
Sbjct: 77 VTSADDPAL-LYFTSGTTGLPKMVLHTHSYPLGHLVTGAYW--LDLRPDDLHWTIADPGW 133
Query: 409 VMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 465
G LF+ +L GA + +Y G ER+ ++ GVT P+ + + L
Sbjct: 134 AKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLEL-LERYGVTTFCAPPTAYRMLLQQD-L 191
Query: 466 EGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 524
D++ +R S GE N + D W A I + G TE + +
Sbjct: 192 SSYDFSHLRHVVSAGEPLNPEVIDWWR--AATGLPIRDGYGQTE-TGLLVANFPGMEVKP 248
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEV---------GLFPLYLGASDRLLNADHE 575
G+ + I+D+ G P + G++ GLF YL + +
Sbjct: 249 GSMGRPAPGYRVAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLK------DPEKT 300
Query: 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635
E RG Y GD + GY GRADD + G + E+E +
Sbjct: 301 EATIRG-DWY------LTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHP 353
Query: 636 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV 694
+ E A + P G EV+ FVVL G+ ++L + ++ + P +
Sbjct: 354 A-VAEAAVVGSPDPVRG--EVVKAFVVLAPGYQP-SEELAKELQEHVKKRTAPYKYPREI 409
Query: 695 KVVPEFPRTASNKLLRRVLRD 715
+ V E P+T S K+ R LR
Sbjct: 410 EFVEELPKTVSGKIRRVELRA 430
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-16
Identities = 89/449 (19%), Positives = 145/449 (32%), Gaps = 81/449 (18%)
Query: 211 TYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY+EL E+ +A L GD +A+ + + V+ LA++ AG V + ++
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A +A L + A+ + T A A ++ + + L
Sbjct: 61 AERLAFILEDAGARLLLTDS----------------ALASRLAGLVLPVILLDPLELAAL 104
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
D + P Y ++++SG+TG PK + T S + A
Sbjct: 105 DDAPAPPPPDAPSGPDDLAY------------VIYTSGSTGRPKGVVVTHRSLVNLLAWL 152
Query: 389 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDA---- 444
L D +L + +F + L GATL + ER +
Sbjct: 153 ARRYGLDPDDRVLQFASLSFDASVEEIFGALLAGATLVVPPED-EERDDAALLAALIAEH 211
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS---FASTGETSNVDDDLWLSSKAWYNAII 501
VTVL PSL+ L + S GE L+ +
Sbjct: 212 PVTVLNLTPSLLAL------LAAALPPALASLRLVILGGE--------ALTPAL-VDRWR 256
Query: 502 ESCGGTELSSAY------IQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPD 548
G L + Y + + A + + G L +LD+ P P
Sbjct: 257 ARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPVPV 316
Query: 549 DQP---CVGEVGLFPLYLGASDRLLNA----DHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601
+G G+ YL L A G +Y R GD+++
Sbjct: 317 GVVGELYIGGPGVARGYLN--RPELTAERFVPDPFAGGDGARLY------RTGDLVRYLP 368
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIERV 630
G + GR DD + + G + EIE
Sbjct: 369 DGNLEFLGRIDDQVKIRGYRIELGEIEAA 397
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-16
Identities = 89/392 (22%), Positives = 138/392 (35%), Gaps = 94/392 (23%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-------- 412
IL++SGTTG PK + T + + L+ DV P
Sbjct: 86 ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVL-------LTPLPLFHINAQA 138
Query: 413 VILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTV---LGTVPSLV-----KAWRNTN 463
++++ L GATL L S F V+ G TV LG + +++ +
Sbjct: 139 YSVYAALLVGATLVLLPRFSA--SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRDH 196
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN----AIIESCGGTELSSAYIQGSLL 519
L + + +W A+ ++E G TE I
Sbjct: 197 PL-----RFVFGAP-------LPAAIW---PAFEERFGVKLVEGYGMTETGVPIIAP--G 239
Query: 520 QPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQPCVGEV--------GLFPLYLG 564
P G + G I+DE G P + GE+ +F Y G
Sbjct: 240 DPAPPG-------SCGRPRPGVEVRIVDEDGREVPPGEV--GELVVRPRRPWAMFKGYYG 290
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRH-GDIIKRTVGGYIIVQGRADDTMNLGGIKTS 623
+ A +R H GD +R G++ R D + G S
Sbjct: 291 MPEATAKA------WRN--------GWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENIS 336
Query: 624 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 683
S E+E A ++ E A ++V G EV VVL+ G T P+ L + F +
Sbjct: 337 SYEVEAAI-LAHPAVAEAAVVAVPSELGEDEVKA-VVVLRPGETLDPEAL-LEFCRD--- 390
Query: 684 KLNPLFKV-SLVKVVPEFPRTASNKLLRRVLR 714
+L P F V ++ V E P+T + K+ + LR
Sbjct: 391 RL-PYFMVPRYIEFVDELPKTPTEKIQKAELR 421
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-16
Identities = 92/339 (27%), Positives = 143/339 (42%), Gaps = 57/339 (16%)
Query: 166 TWLPGSVLNIAECCL---LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLV 222
+WL +NIA + + K VA+ + D S TYKEL+E
Sbjct: 35 SWLETGKVNIAYEAIDRHADGGRKDK----VALRYL----DASRKEKYTYKELKELSNKF 86
Query: 223 ANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKA 281
AN L + KGD + I MP L + G +V + ++F + RL S+A
Sbjct: 87 ANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEA 146
Query: 282 KGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340
K + T +L K P LK ++L +G DV +D
Sbjct: 147 KVLITTPALLE--------RKPADDLPSLKHVLL--VGEDVEEGPGT-----------LD 185
Query: 341 YHPRPNYYSPVYNPV-----DAVVNIL-FSSGTTGEPKAIPWTQLSSIRCTAEG-WAHID 393
++ S ++ D IL ++SG+TG+PK + + ++ G + +D
Sbjct: 186 FNALMEQASDEFDIEWTDREDGA--ILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYV-LD 242
Query: 394 LKVGDVYCWPT-NLGWVMGPVI-LFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVL 449
L DVY W T + GWV G +F+ +LNGAT + G SP ER + ++D VTV
Sbjct: 243 LHEDDVY-WCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSP-ERWYR-ILEDYKVTVW 299
Query: 450 GTVPS----LVKAWRNTNCLEGLDWTKIRSFASTGETSN 484
T P+ L+ A + ++ D + +R S GE N
Sbjct: 300 YTAPTAIRMLMGA--GDDLVKKYDLSSLRHILSVGEPLN 336
|
Length = 570 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 3e-16
Identities = 120/532 (22%), Positives = 207/532 (38%), Gaps = 72/532 (13%)
Query: 211 TYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+++EL AN L +GD +A+ +P ++ +A I G V +
Sbjct: 43 SFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLT 102
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A++I RL+ SKAK I T D + A + +I + L
Sbjct: 103 AKDILYRLQASKAKCIVTSDEL---------------APAVDSIASEC--PSLKTKLLVS 145
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN----ILFSSGTTGEPKAIPWTQLS-SIR 383
+ S +L ++ S + V I F+SGTTG PK + S +
Sbjct: 146 EHSRDGWL---NFKELLKEASTEHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLG 202
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFV 441
G +DL D+ ++ GW+ + LFS ++ GA + ++ + + + +
Sbjct: 203 LKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTL 262
Query: 442 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-- 499
+T + P++ + + L + +R + GE N + + W
Sbjct: 263 SKYPITTFCSAPTVYRMLVQQD-LTSYKFKSLRHCVTGGEPLNPEV-----LEQWKAQTG 316
Query: 500 --IIESCGGTE--LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE 555
+ E G TE L A +G ++P G+ A+ + I+D+ G P G+
Sbjct: 317 LDLYEGYGQTETGLICANFKGMKIKP---GSMGKASPPYDVQIIDDNGNVLPPGTE--GD 371
Query: 556 VG----------LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 605
+G LF Y+ ++ + Y G D GY
Sbjct: 372 IGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYITG-------------DRGIMDEDGYF 418
Query: 606 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 665
GRADD +N G + E+E + +++E+A +S SP EV+ FVVL
Sbjct: 419 WFVGRADDVINSSGYRIGPFEVESALIE-HPAVVESAVVS-SPDPIRGEVVKAFVVLAPQ 476
Query: 666 FTSQ-PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 716
F S P++L + ++S P V+ V E P+T + K+ R LRD+
Sbjct: 477 FLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGKIKRNELRDK 528
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 4e-16
Identities = 129/566 (22%), Positives = 207/566 (36%), Gaps = 115/566 (20%)
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPM 242
H + N +AI + +TYK+ E V VAN L+ SK IAI +
Sbjct: 8 KKHASLQPNKIAIKENDRV--------LTYKDWFESVCKVANWLNEKESKNKTIAILLEN 59
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
+ + ++ +AG+ V + + E+ RL +S A I T+ + L
Sbjct: 60 RIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLN---------- 109
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
L I D WK + Y P Y+P+ N +A +
Sbjct: 110 -----DLPDEEGRVIEID----------EWKRMIE--KYLPT---YAPIENVQNAPFYMG 149
Query: 363 FSSGTTGEPKAIPWTQLS---SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS- 418
F+SG+TG+PKA Q S S C D + + V+ L S
Sbjct: 150 FTSGSTGKPKAFLRAQQSWLHSFDCNVH----------DFHMKREDS--VLIAGTLVHSL 197
Query: 419 FLNGATLALYQGSP--LERSFGKF-----VQDAGVTVLGTVPSLVKAWRNTNCL------ 465
FL GA LY G L R F ++ ++V+ TVP+++++ N +
Sbjct: 198 FLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENRVIENKMK 257
Query: 466 ---EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELS---SAYIQGSLL 519
G W + + N+ + +K + E G +ELS + + S
Sbjct: 258 IISSGAKWEAE----AKEKIKNI----FPYAKLY-----EFYGASELSFVTALVDEESER 304
Query: 520 QPQAFG-AFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVY 578
+P + G F V + C + Q GE+G +Y+ + + V
Sbjct: 305 RPNSVGRPFHN-------VQVRICNEAGEEVQK--GEIGT--VYVKSPQFFMGYIIGGVL 353
Query: 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638
R + M +R G + G+I + GR + + GGI EIE V + +
Sbjct: 354 ARELNADGWMTVRDVGYEDEE---GFIYIVGREKNMILFGGINIFPEEIESVLHEHPA-V 409
Query: 639 LETAAISVS-PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKV 696
E I V G V +I K T Q +LK +L+ FK+
Sbjct: 410 DEIVVIGVPDSYWGEKPVAII----KGSATKQ--QLK----SFCLQRLSS-FKIPKEWHF 458
Query: 697 VPEFPRTASNKLLRRVLRDQIKHELS 722
V E P T S K+ R + I+++
Sbjct: 459 VDEIPYTNSGKIARMEAKSWIENQEK 484
|
Length = 487 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 6e-16
Identities = 87/368 (23%), Positives = 134/368 (36%), Gaps = 38/368 (10%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
I+++SG+TGEPK + + + +++L D + G L ++F
Sbjct: 7 IIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGLSQLLTAFR 66
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
G TL L R K + +T VP+ + L D+ +R + G
Sbjct: 67 VGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSLRYLTNAG 126
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQGSLL--QPQAFGAFSTATMTAGLV 537
L L + G TE S Y+ L +P + G A L
Sbjct: 127 GALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIG---KAIPNVELW 183
Query: 538 ILDECGVPYPDDQPC-VGEVGLF----PL----YLGASDRLLNADHEEVYFRGMPMYKGM 588
++DE D C GEVG Y + E R P+ +
Sbjct: 184 VVDE------DGNRCAPGEVGELVHRGANVMKGYWNDPEAT-----AER-LRPGPLPGEI 231
Query: 589 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS- 647
L GD+++ GY+ GR DD + G + S EIE V + E A I V
Sbjct: 232 VLYT-GDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPL-VAEAAVIGVPD 289
Query: 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASN 706
P G + +V VV G + +L K + L P + V + + V P+ A+
Sbjct: 290 PLLG--QAIVAVVVSADGESLDEKELL----KHCRKHL-PNYMVPAEIVFVDSLPKNANG 342
Query: 707 KLLRRVLR 714
K+ R LR
Sbjct: 343 KVDRSALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 4e-15
Identities = 94/382 (24%), Positives = 148/382 (38%), Gaps = 61/382 (15%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT-NLGWVMGPVI-LFSS 418
+ F+SGTTG+PK + + + A +DL+ DVY W T + GWV G + +
Sbjct: 94 LHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY-WCTADPGWVTGTSYGIIAP 152
Query: 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSF 476
LNG TL + +G + +++ VTV T P+ ++ D + +R
Sbjct: 153 LLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHI 212
Query: 477 ASTGETSNVDDDLWLSSK-------AWYN----AI-IESCGGTELSSAYIQGSLLQPQAF 524
AS GE N + +W W+ AI I + G + GS+ +P
Sbjct: 213 ASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKP----GSMGRP--L 266
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-------FPLYLGASDRLLNADHEEV 577
A + D Q VGE+ L F YLG +R
Sbjct: 267 PGIEAAVIERD---GDGLTPVTGPGQ--VGELALKPGWPSMFRGYLGNEERY------AS 315
Query: 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADES 637
F Y GD+ R GY GRADD + G E+E
Sbjct: 316 SFVD-GWY------LTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESA------- 361
Query: 638 ILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS 692
++E A++ + G P E++ FV L+ GF ++L+ + +L
Sbjct: 362 LMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEP-SEELRRELLTFARQRLGAAVAPR 420
Query: 693 LVKVVPEFPRTASNKLLRRVLR 714
+ V P+T S K++RR+L+
Sbjct: 421 EIHFVDNLPKTRSGKIMRRLLK 442
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 7e-15
Identities = 56/261 (21%), Positives = 96/261 (36%), Gaps = 43/261 (16%)
Query: 210 MTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL V +A L KGD + + P ++ +++LA++ AG VV+ A+
Sbjct: 33 LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAG-AVVTTANPLY 91
Query: 269 -AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 327
EIA +++ S AK T L K+ A ++L + +
Sbjct: 92 TPAEIAKQVKDSGAKLAITTS---------ELAEKLASLALEPVVLLDSADDGSA----- 137
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRC 384
+ + + P V D + +SSGTTG K + T ++++
Sbjct: 138 -------AIDDLLFADEPEPPVVVIKQDDVAA-LPYSSGTTGRSKGVMLTHRNLIANVAQ 189
Query: 385 TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL----ERSFGKF 440
G + DV + + G + L L G+ + KF
Sbjct: 190 LVAGEG-PNFDREDVTLCVLPMFHIYG----LTVILLA---LLRLGATVVVMPRFDLEKF 241
Query: 441 ---VQDAGVTVLGTVPSLVKA 458
++ VT L VP +V A
Sbjct: 242 LAAIEKYKVTHLPVVPPIVLA 262
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-14
Identities = 89/374 (23%), Positives = 150/374 (40%), Gaps = 48/374 (12%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNLGWV--MG 411
D V I F+SGTTG PK I + + L+ DV+ L + +G
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFH-RDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGLG 205
Query: 412 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRN-TNCLEGLDW 470
++LF + + L Q +P K +Q+ T+L T P+ A+R ++ D
Sbjct: 206 GLVLFPLRFGASAVLLEQATP--PLLLKAIQEHRATILFTAPT---AYRAMLIKVKAFDI 260
Query: 471 TKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYIQGS--LLQPQAF 524
+ +R S GET + +W + WY II+ G TE+ +I + +P A
Sbjct: 261 SSLRKCVSAGET--LPAKVW---QDWYERTGLKIIDGIGATEMLHIFISANEENAKPGAT 315
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM 584
G A I+D+ G P GE G + R L+ + ++ Y R
Sbjct: 316 G-KPVPGYEA--RIVDDQGNEVPR-----GEAGRLAVRGPTGCRYLDDERQQEYVRDGWN 367
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
GDI ++ GY R+DD + G ++ E+E + E A I
Sbjct: 368 VT-------GDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLT-HPDVAECAVI 419
Query: 645 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ----SKLNPLFKVSLVKVVPEF 700
V P +++ +VL+ G ++ +L ++ +Q + + P + V
Sbjct: 420 GV-PDEERGQIVCAHIVLRDG--TKATEL---LAERLQDFVKAVIAPYKYPREINFVDAL 473
Query: 701 PRTASNKLLRRVLR 714
P+T + K+ R LR
Sbjct: 474 PKTQTGKIQRFRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 2e-14
Identities = 105/402 (26%), Positives = 144/402 (35%), Gaps = 99/402 (24%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNL----GWVM 410
D I ++SGTTG PK T + + A L GD P L G V+
Sbjct: 2 DDPALIQYTSGTTGRPKGAMLTHRNVLN-NGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60
Query: 411 GPVILFSSFLNGATLALYQGSPLERSFGKF--------VQDAGVTVLGTVPSLVKAWRNT 462
G + +S GATL L + KF ++ +T L VP++ A
Sbjct: 61 G---VLASLTAGATLVLME---------KFDPGAALRLIERERITALHGVPTMFIA---- 104
Query: 463 NCLEGLDWTK-----IRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQ 515
LE D+ K +R+ S G + V +L + + I G TE S Q
Sbjct: 105 -LLEHPDFDKFDLSSLRTGISGG--APVPPELVRRIREEFPMAEITTGYGMTETSGVGTQ 161
Query: 516 GSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNAD 573
S P + T G + E + PD GEVG
Sbjct: 162 TSGDDP-----YEDRPGTVGRPLPGVEVKIVDPDGGEVPPGEVG---------------- 200
Query: 574 HEEVYFRGMPMYKG---------------MCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618
E+ RG + KG L GD+ GY+ + GR D + G
Sbjct: 201 --EICVRGYSVMKGYYNDPEATAEAIDADGWLHT-GDLGYMDEDGYLRIVGRIKDMIIRG 257
Query: 619 GIKTSSVEIERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKL 673
G EIE + E A + V P EV+ FVVLK G T ++L
Sbjct: 258 GENIYPAEIEEALLTHPA-VAEAAVVGV------PDERLGEVVAAFVVLKPGATLTEEEL 310
Query: 674 KMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLR 714
+ +L FKV V+ V E PRTAS K+ + LR
Sbjct: 311 I----AFCRGRLAR-FKVPRYVRFVDELPRTASGKIQKFKLR 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-14
Identities = 121/519 (23%), Positives = 203/519 (39%), Gaps = 55/519 (10%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++Y EL QV + AL + + + + + M V I +L I AG V V++
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLRE 327
A + A L S+A+ +F +L P+ LG +P L+ V+ E
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELL------PVIKAALGKSPHLEHRVVVG-----RPEAGE 139
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
L+ + L++ + P D L+SSG+TG PK + T S+ TAE
Sbjct: 140 VQLA--ELLAT-----ESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTH-SNPYWTAE 191
Query: 388 GWAH--IDLKVGDVYCWPTNL--GWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD 443
+A + ++ DV L + +G + F + GAT L P + ++
Sbjct: 192 LYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSV-GATTVLMGERPTPDAVFDRLRR 250
Query: 444 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIE 502
T+ VP+L A L D ++R S GE + ++ +A + I++
Sbjct: 251 HQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEA--LPAEVGQRWQARFGVDIVD 308
Query: 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQPCVGEVGLFP 560
G TE+ ++ P ++ G L ++ + G GE G
Sbjct: 309 GIGSTEMLHIFLSN---LPGDVRYGTSGKPVPGYRLRLVGDGGQDVAA-----GEPGELL 360
Query: 561 LYLGASDRLL--NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618
+ +S + N F+G R GD R G GR DD + +
Sbjct: 361 ISGPSSATMYWNNRAKTRDTFQGE-------WTRSGDKYVRNDDGSYTYAGRTDDMLKVS 413
Query: 619 GIKTSSVEIERVCDQADESILETAAISVSPAGG--GPEVLVIFVVLKKGFTSQPDKLKMI 676
GI S EIE ++LE A + V G P+ F+VL+ G L+
Sbjct: 414 GIYVSPFEIESAL-IQHPAVLEAAVVGVEDEDGLIKPKA---FIVLRPGQDI-DTALETE 468
Query: 677 FSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715
+ ++ +L P + V + P+TA+ K+ R LR+
Sbjct: 469 LKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLRE 507
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-13
Identities = 91/373 (24%), Positives = 150/373 (40%), Gaps = 44/373 (11%)
Query: 361 ILFSSGTTGEPKA-----------IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 409
++++SGTTG PK +P +L + + GDV+ P + W+
Sbjct: 93 LIYTSGTTGPPKGALHGHRVLLGHLPGVELY--------FEL-APRPGDVFWTPADWAWI 143
Query: 410 MGPV-ILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE 466
G + +L + G + Y+ ER+F ++ GVT P+ +K R
Sbjct: 144 GGLLDVLLPALYFGVPVVAYRMQRFDPERAF-ALMRRYGVTNAFLPPTALKMMRRVGSER 202
Query: 467 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA 526
++R+ AS GE+ + W + + E G TE + + L P G+
Sbjct: 203 ARYDLRLRAVASGGESLGEELLEW-ARDELGLTVNEFYGQTEANLVVGNCAALGPARPGS 261
Query: 527 FSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL----NADHEEVYFRGM 582
+ ++D+ G P P GEVG + L N + F G
Sbjct: 262 MGKPVPGHEVAVVDDAGRPVP-----PGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGD 316
Query: 583 PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 642
+ GD+ +R GY+ +GRADD + G + EIE C ++LE A
Sbjct: 317 WL-------LTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEE-CLLKHPAVLEAA 368
Query: 643 AISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR 702
+ V G E++ FVVL +G D+L + ++S+L ++ V E P
Sbjct: 369 VVGVPDPERG-EIVKAFVVLAEGVEP-SDELATELQELVKSRLAAHEYPREIEFVDELPM 426
Query: 703 TASNKLLRRVLRD 715
T + K+ RR LR
Sbjct: 427 TTTGKIRRRELRR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 1e-13
Identities = 97/387 (25%), Positives = 145/387 (37%), Gaps = 73/387 (18%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 415
D IL++SGTTG PK + T + + A +DL GDVY L + P L
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVY-----L--LAAP--L 51
Query: 416 FSSFLNGATL-ALYQGSP--LERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTNCLEG 467
+ + L AL G L F ++ VT VP++ +
Sbjct: 52 YHAAGGLFLLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFAR 111
Query: 468 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAF-- 524
D + +R + + +L + W+ + + G TE +LL P+ +
Sbjct: 112 YDLSSLRLIIYGA--APMPAELKRAMIEWFGPVFVQGYGMTETGPT---TTLLSPEDWLR 166
Query: 525 --GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG- 581
G+ + I+DE G P GEVG E+ RG
Sbjct: 167 KLGSVGRPVPGVEVRIVDEDGRELP-----PGEVG------------------EIVVRGP 203
Query: 582 --MPMYKGM------CLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 629
M Y LR GD+ GY+ + R D + GG E+E
Sbjct: 204 AVMAGYWNRPEATAEALRDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVEN 263
Query: 630 VCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
V ++ + A I V G E +V VVL+ G T ++L F + +L
Sbjct: 264 VLLA-HPAVADVAVIGVPDEEWG--EAVVAVVVLRPGATLDAEELIA-FCRE---RLAG- 315
Query: 689 FKV-SLVKVVPEFPRTASNKLLRRVLR 714
+KV V+ V E PR AS K+L+R LR
Sbjct: 316 YKVPKSVEFVDELPRNASGKILKRELR 342
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-13
Identities = 92/392 (23%), Positives = 141/392 (35%), Gaps = 80/392 (20%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDV-YCWPTNLGWVMG 411
D IL +SGTTG PK +P T L+S R A+ L D VM
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHK---LTPSDRCLN-------VMP 51
Query: 412 P-------VILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRN 461
V L ++ L G ++ P + S KF + VT VP++ +
Sbjct: 52 LFHIHGLIVSLLATLLAGGSVVC----PPKFSASKFWDDIAKYRVTWYSAVPTIHQILLK 107
Query: 462 T-NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI------ 514
T G ++R F + L K + ++E+ G TE +
Sbjct: 108 TAKPNPGKPPPRLR-FIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPP 166
Query: 515 ----QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGA 565
GS+ +P + ILD+ G P P Q GE+ + YL
Sbjct: 167 LVRKPGSVGRPAG----------VEVAILDDDGRPLPPGQ--EGEIVIRGPNVTAGYLNN 214
Query: 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625
+ A + +FR GD+ GY+ + GR + +N GG K S
Sbjct: 215 PEANREAFRDG-WFRT------------GDLGYLDEDGYLFLTGRIKELINRGGEKISPR 261
Query: 626 EIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
E+E V + + E V G E + VVL+ ++L+ A +
Sbjct: 262 EVEEVLLRHPA-VAEAVVFGVPDELYG--EEVAAAVVLRADSKVTIEELR---DFARKRL 315
Query: 685 LNPLFKV-SLVKVVPEFPRTASNKLLRRVLRD 715
FKV + V P+ A+ K+ RR L +
Sbjct: 316 A--AFKVPKKILFVDALPKGATGKIQRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 5e-13
Identities = 121/547 (22%), Positives = 216/547 (39%), Gaps = 76/547 (13%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ++V AN L + KGD +AI +P +AVI Y +LAG +VV +
Sbjct: 50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ +L S AK I D + FP + V A ++ +++ I + + P +
Sbjct: 110 ERELEYQLHDSGAKVILCLDLV------FPRVTNVQSATKIEHVIVTRIADFLPFP---K 160
Query: 329 DLSW-------KDFLSSVDYHPRPNYYSPVYNPVDAVVNIL-----------FSSGTTGE 370
+L + + + V + ++ V V+ V + ++ GTTG
Sbjct: 161 NLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGF 220
Query: 371 PKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLAL 427
PK + T + + T G W + + +V V G ++ S + G + L
Sbjct: 221 PKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVL 280
Query: 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
++ F + ++ VT+ P++ A N+ L+ D + IR+ S V+
Sbjct: 281 IPKFDMKMVF-EAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEV 339
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP 547
+ ++E G TE S L + + G+ GVP+P
Sbjct: 340 QEKFETVTG-GKLVEGYGLTESSPVTHSNFLWEKRVPGSI---------------GVPWP 383
Query: 548 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR-------------RHG 594
D + + + L + L + E+ +G + KG + G
Sbjct: 384 DTEAMI-------MSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTG 436
Query: 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654
D+ G+ V+ R D + G E+E V + ++ + E I V G E
Sbjct: 437 DVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEK-VQEVVTIGVPDPYRG-E 494
Query: 655 VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV-KVVPEFPRTASNKLLRRVL 713
+ FVVLK+G ++L K + + +KV V + E P+T K+LRRVL
Sbjct: 495 TVKAFVVLKEGTECSEEELNQFARKYLAA-----YKVPKVYEFRDELPKTTVGKILRRVL 549
Query: 714 RDQIKHE 720
++ K +
Sbjct: 550 IEEEKRK 556
|
Length = 563 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-13
Identities = 102/500 (20%), Positives = 179/500 (35%), Gaps = 89/500 (17%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVR 245
+ + VA++++E +TY+EL E+V +A+ L GD +AI
Sbjct: 27 KDRPDGVALMYKEL----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPE 82
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD------FILRGGRKFPL 299
I LAI+ G V V I + ++A L S++K IF ++ + +
Sbjct: 83 WAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKV 142
Query: 300 YSKVLGAAPLKAIVLP-----AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP 354
++ ++ V + D GI L D S R P
Sbjct: 143 VDLIVIIDLVREAVEAKALVLEVFPDEGISLFLID--------SAGLEGRIAPPKP---- 190
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVY-CW-PTNLGWVMG 411
D + I+++SGTTG PK + T + + A + + GD + P L +
Sbjct: 191 -DDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLP--LAHIFE 247
Query: 412 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSL------------VKAW 459
L G L++ P R+ + +++ TV+ VP + KA
Sbjct: 248 RAFEGGLALYGGVTVLFKEDP--RTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAP 305
Query: 460 RNTNCL-EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL 518
L + + L ++ + + I ++ GG + A G+
Sbjct: 306 AVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGG-RIRYALSGGAP 364
Query: 519 LQPQAFGAFSTA-----------TMTAGLVILDECGVPYPDDQPCVGEVG-LFPLYLGAS 566
L P+ F + T T+ +V ++ P D+ +G VG P G
Sbjct: 365 LSPEL-LHFFRSLGIPILEGYGLTETSAVVSVN------PPDRFVLGTVGKPLP---GIE 414
Query: 567 DRLLNADHEEVYFRGMPMYKGMCLR--------------RHGDIIKRTVGGYIIVQGRAD 612
++ AD E+ RG + KG R GD+ + GY+++ GR
Sbjct: 415 VKI--ADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKK 472
Query: 613 DTMNL-GGIKTSSVEIERVC 631
+ + L G + IE
Sbjct: 473 ELIKLSNGKNIAPEPIESKL 492
|
Length = 613 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 8e-12
Identities = 108/456 (23%), Positives = 172/456 (37%), Gaps = 95/456 (20%)
Query: 304 LGAAPLKAIVLPA-----IGNDVGIPLREQDLSWKDFLSSVDYH---PRPNYYSPVYNPV 355
L A+ L A++ A +G+D R F++S D P P
Sbjct: 81 LSASELDALLQDAEPRLLLGDDAVAAGRTDVEDLAAFIASADALEPADTP------SIPP 134
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 415
+ V ILF+SGT+G+PK + ++ +++ TA N G V+G V
Sbjct: 135 ERVSLILFTSGTSGQPKGVMLSE-RNLQQTA-----------------HNFG-VLGRVDA 175
Query: 416 FSSFL--------------------NGATLALYQGSPLERSFGKFV-QDAGVTVLGTVPS 454
SSFL G ++ + G +R+ G+ G+T VP
Sbjct: 176 HSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQ 235
Query: 455 LVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA-- 512
+ +A+R + + + + G +D L W + I G +S A
Sbjct: 236 MAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILG-----WLDDGIPMVDGFGMSEAGT 290
Query: 513 ----YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-----GLFPLYL 563
+ +++ +A GA T T ++D+ G P P GE+ L P Y
Sbjct: 291 VFGMSVDCDVIRAKA-GAAGIPTPTVQTRVVDDQGNDCPAGVP--GELLLRGPNLSPGYW 347
Query: 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 623
A + +FR GDI +R G+ V R D GG
Sbjct: 348 RRPQATARAFTGDGWFRT------------GDIARRDADGFFWVVDRKKDMFISGGENVY 395
Query: 624 SVEIERVCDQADE-SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 682
EIE V AD I E A + ++ A G EV + +V G ++++ S +
Sbjct: 396 PAEIEAVL--ADHPGIRECAVVGMADAQWG-EVGYLAIVPADGAPLDLERIRSHLSTRLA 452
Query: 683 SKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQI 717
+KV +++V PRTAS KL + LRD +
Sbjct: 453 K-----YKVPKHLRLVDALPRTASGKLQKARLRDAL 483
|
Length = 488 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 120/573 (20%), Positives = 187/573 (32%), Gaps = 173/573 (30%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVR 245
K + A+V D +TY EL+E+ +A L + GD +A+ +
Sbjct: 2 AKHPDRPALVVGGDT--------LTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPD 53
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
A LA + AG V + S A R+ K+L
Sbjct: 54 AYAAILACLKAGAAYVPLDPSQPA----ERIA------------------------KILE 85
Query: 306 AAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365
AA A+V P Y ILF+S
Sbjct: 86 AAGPAALV---------------------------ADPDDLAY------------ILFTS 106
Query: 366 GTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-------- 414
G+TG+PK + + S + W D + + G V
Sbjct: 107 GSTGKPKGVQISHANLASFL-----DWMVEDFDLTE------------GDVFSNQAPFSF 149
Query: 415 ------LFSSFLNGATLAL----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
LF + +GATL + PL +F+++ G+TV +VPS +
Sbjct: 150 DLSVFDLFPALASGATLYVIPKEQIADPLA--LFEFLKEHGLTVWVSVPSFASLLLLSRE 207
Query: 465 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-----IIESCGGTELSSA--YIQGS 517
L +R+F GE +KA II G TE + A + +
Sbjct: 208 LNPESLPSLRTFLFCGEVLPKKL-----AKALRRRFPNARIINLYGPTEATVAVTAYEVT 262
Query: 518 LLQPQAFG------AFSTATMTAGLVILDECGVPYPDDQP---CVGEVGLFPLYLGASDR 568
+ILDE G P P + + + P YL ++
Sbjct: 263 PEPLSRNEPLPIGYPKPGLR----ALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEK 318
Query: 569 LLNADHEEVYFR--GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626
+ +F+ G Y R GD++ G ++ GR D + L G + +E
Sbjct: 319 -----TAKAFFQDEGQRWY------RTGDLVYLEDDGLLVYLGRKDFQIKLHGYR---IE 364
Query: 627 IERVCDQADESIL------ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA 680
+E + E+ L E A + P G LV FVV K+G LK K
Sbjct: 365 LEEI-----EAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGALD-TKALK----KE 414
Query: 681 IQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 713
++ +L P + P A+ K+ R+ L
Sbjct: 415 LKKRLPPYMIPRRFVYLDSLPLNANGKIDRKAL 447
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 3e-11
Identities = 94/451 (20%), Positives = 151/451 (33%), Gaps = 70/451 (15%)
Query: 199 EDRCDESAVNL----MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAI 253
D A+ +TY EL + +A L G+ +AI ++ V+ LA+
Sbjct: 238 ATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAV 297
Query: 254 ILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV 313
+ AG V + + A +A L S+ + TQ
Sbjct: 298 LKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQA------------------------- 332
Query: 314 LPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA 373
+DVG+P D + + + P DA+ I+++SG+TG+PK
Sbjct: 333 -HLRVDDVGLPGLALDDALSEIPDTDP--------IPQALLGDALAYIIYTSGSTGQPKG 383
Query: 374 IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLAL----YQ 429
+ + + A L D +L + +F + L GA L L Q
Sbjct: 384 VRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQ 443
Query: 430 GSPLERSFGKFVQDAGVTVLGTVPSLVK--AWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
P + ++ G+TVL VP L++ ++R S GE +
Sbjct: 444 VDPAA--LLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLAL 501
Query: 488 DLWLSSKAWYNAIIESCGG-----TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC 542
L A + + G + S I L G T L ILD+
Sbjct: 502 VQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQ---LYILDQ- 557
Query: 543 GVPYPDDQPC--VGEVGLFPLYLGASDRLLNADH-EEVYFRGMPMYKGMCLRRHGDIIKR 599
P GE+ + L L A L D E + +Y R GD+ +
Sbjct: 558 ---GLRPLPLGVPGELYIAGLGL-ALGYLNRPDLTAERFIAL-RLY------RTGDLARP 606
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERV 630
G + GR D + + G + EIE
Sbjct: 607 LADGALEYLGRKDSQVKIRGFRIELGEIEAA 637
|
Length = 642 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-11
Identities = 125/564 (22%), Positives = 222/564 (39%), Gaps = 99/564 (17%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYV 259
+TY +L E+V + L + SK D + I M T+ +I L+ ++ GY
Sbjct: 93 LTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYS 152
Query: 260 VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI----VLP 315
V S+ D I +L ++ GI + I F + A L V+
Sbjct: 153 VKSLIDRI--ETITPKLIITTNYGILNDEII-----TFT--PNLKEAIELSTFKPSNVIT 203
Query: 316 AIGNDV----------GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV--VNILF 363
ND+ IP LSW D + + + + +Y Y PV++ + IL+
Sbjct: 204 LFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYE--YVPVESSHPLYILY 261
Query: 364 SSGTTGEPKAIPWTQLSSIRCTAEGW-AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422
+SGTTG KA+ + + W + I+ + V +++GWV L+ S G
Sbjct: 262 TSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLG 321
Query: 423 ATLALYQG-----SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477
T +++G +E ++ VT T+P ++ T+ + T IR
Sbjct: 322 NTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDP----EATIIR--- 374
Query: 478 STGETSNVDDDLWLSSKAWYNAI---IES---------CGGTELSSAYIQGSLLQPQAFG 525
S + SN+ ++W + +I IE+ G TE+ Y+ +G
Sbjct: 375 SKYDLSNL-KEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYC-------YG 426
Query: 526 AFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVY 578
+ G+ IL E G ++ +GEV F L + S ++E +
Sbjct: 427 HINIPYNATGVPSIFIKPSILSEDGKELNVNE--IGEVA-FKLPMPPSFATTFYKNDEKF 483
Query: 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638
+ + G GD+ + GY + R+DD + + G K IE SI
Sbjct: 484 KQLFSKFPGY--YNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIE-------TSI 534
Query: 639 L------ETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPLF 689
L E +I + V + +VLK+ ++Q +KLK + I + L
Sbjct: 535 LKHPLVLECCSIGIYDPDCY-NVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLA 593
Query: 690 KVSLVKVVPEFPRTASNKLLRRVL 713
+ + +V + P+T + K+ R+++
Sbjct: 594 VLRKIIIVNQLPKTKTGKIPRQII 617
|
Length = 647 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 9e-11
Identities = 90/382 (23%), Positives = 139/382 (36%), Gaps = 49/382 (12%)
Query: 356 DAVVNILFSSGTTGEPK--AIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 413
D + ++++SG+TG+PK AI L++ C + L D + + +G
Sbjct: 656 DNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAER--LQLAADDSMLMVSTFAFDLGVT 713
Query: 414 ILFSSFLNGATLAL--YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 471
LF + +GATL L + +F + D GVTVL VPS ++A + +
Sbjct: 714 ELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALP--R 771
Query: 472 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTA 530
R+ GE VD + + +I G TE + L + + FG
Sbjct: 772 PQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIG 831
Query: 531 TMTA--GLVILDECGVPYPDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPM 584
A GL ILD P P VGE LY+G A F P
Sbjct: 832 QPLANLGLYILDHYLNPVP--VGVVGE-----LYIGGAGLARGYHRRPALTAERFVPDPF 884
Query: 585 -YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 643
G L R GD+ + G I GR D + + G + EIE A + E
Sbjct: 885 GADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIE-ARLLAQPGVREAVV 943
Query: 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEF--- 700
++ G LV ++V +++ L +V+P++
Sbjct: 944 LAQPGDAG--LQLVAYLVPAAVADGAE---HQATRDELKA--------QLRQVLPDYMVP 990
Query: 701 ---------PRTASNKLLRRVL 713
P T + KL R+ L
Sbjct: 991 AHLLLLDSLPLTPNGKLDRKAL 1012
|
Length = 3956 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 1e-10
Identities = 87/393 (22%), Positives = 136/393 (34%), Gaps = 85/393 (21%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG-----WVMGPVIL 415
++++SG+TG PK + + A L GD + W +
Sbjct: 98 VIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSFDASVWE-----I 152
Query: 416 FSSFLNGATLALY----QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 471
F L+GATL L P + +++ +TVL VPSL++A + L
Sbjct: 153 FPPLLSGATLVLAPPEVLRDPEA--LAELLREHRITVLHLVPSLLRALLDALEPAAL--P 208
Query: 472 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY------IQGSLLQPQAFG 525
+R GE E G L +AY + + +
Sbjct: 209 SLRLVIVGGEA---------LPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDP-D 258
Query: 526 AFSTATMTAG-------LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHE 575
++ G + +LDE P P P +G G+ YL + L A+
Sbjct: 259 DLDGGSVPIGRPIANTRVYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPE--LTAER- 315
Query: 576 EVYF-------RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD-------TMNLGGIK 621
F G +Y R GD+ + G + GRADD + LG
Sbjct: 316 ---FVPDPFGGPGERLY------RTGDLARWLPDGNLEFLGRADDQVKIRGYRIELG--- 363
Query: 622 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 681
EIE A + E A + G G + LV +VV G +L+ +
Sbjct: 364 ----EIEAAL-LAHPGVRE-AVVVAREDGAGEKRLVAYVVPAAGAELDAAELR----AFL 413
Query: 682 QSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVL 713
+L P + V S V+ P T + K+ R+ L
Sbjct: 414 AERL-PDYMVPSAFVVLDALPLTPNGKVDRKAL 445
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 118/531 (22%), Positives = 196/531 (36%), Gaps = 66/531 (12%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY + +V +ANAL+++ GD +A T R + +Y A+ G V+ ++ +
Sbjct: 27 TYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLSP 86
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQ 328
+IA + ++ K IF D L PL + P +KA+V+ + L
Sbjct: 87 EQIAYIINHAEDKVIFVDDDFL------PLLEAIAPRLPTVKAVVVYDDADMPETSL-PN 139
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-----R 383
++++ L P Y P + A + ++SGTTG PK + ++ S +
Sbjct: 140 VYAYEELLEEES----PEYEWPELDENTAAG-LCYTSGTTGNPKGVVYSHRSLVLHTLAS 194
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD 443
+ L D + V + +++ + GA L L S +++
Sbjct: 195 ALPDSLG---LSESDTVLPVVPMFHVNAWGLPYAATMVGAKLVLPGRYLDPASLLDLIEE 251
Query: 444 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501
VTV VP++ N G D + +R G L K +I
Sbjct: 252 EKVTVSAGVPTIWLGLLNYLEANGKDLSSLRRVVVGGSAL----PRSLIEKLEERGVEVI 307
Query: 502 ESCGGTELS----SAYIQGSLLQPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQ 550
+ G TE S + ++ L+ G I+D+ G P D
Sbjct: 308 HAWGMTETSPLGTVSRLKPHLVDLPEEEKLE-LRAKQGRPVPGVELRIVDDEGNELPWDG 366
Query: 551 PCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 605
VGE+ + Y + + E R R GD+ GYI
Sbjct: 367 KTVGELVVRGPWVTGSYYK------DPEKTEELTRDGWF-------RTGDVAVIDEDGYI 413
Query: 606 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKK 664
+ RA D + GG SSVE+E ++ E A + V G E + VVLK
Sbjct: 414 QITDRAKDVIKSGGEWISSVELENALMAH-PAVAEAAVVGVPHEKWG--ERPLAVVVLKP 470
Query: 665 GFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715
G ++L +K + P V V E P+T+ K ++ LR+
Sbjct: 471 GAKVTEEELLEHLAKKVAKWWLP----DRVVFVDEIPKTSVGKFDKKALRE 517
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-10
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 25/214 (11%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
A+V+ + R TY+E ++ +A+AL + KGD +A+ P T + +
Sbjct: 21 TAVVYGDRR--------YTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHF 72
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLK 310
+ +AG V+V + A +IA L S+AK +F Q+F L + L K
Sbjct: 73 GVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEF-------LSLAEEALALLSTK 125
Query: 311 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVD--AVVNILFSSGTT 368
I+ I ++ ++D L+ D P P D +++ ++SGTT
Sbjct: 126 EIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDP------LPIPPDDEWDPISLNYTSGTT 179
Query: 369 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 402
G PK + +T + + VY W
Sbjct: 180 GNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLW 213
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 120/518 (23%), Positives = 181/518 (34%), Gaps = 65/518 (12%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY ELR +V VA L +A+ P +V AVI LA+ G V +
Sbjct: 29 LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + I RG + + V+ A V+ AI G +R
Sbjct: 89 PAEIA--------------ELIKRG----EMTAAVIAVD---AQVMDAI-FQSGSGVRVL 126
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA--IPWTQLSS---IR 383
L L P P P + ++SGTTG PK IP S
Sbjct: 127 ALGDLVGLG-EPESAGPPIEDPPREPEQPAF-VFYTSGTTGLPKGAVIPQRAAESRVLFM 184
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFV 441
T G H +V L V+G V++ + L+G + + + P + K +
Sbjct: 185 STQAGLRHGR---HNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADAL--KLI 239
Query: 442 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501
+ VT L P+ + A L + G T D L ++ +
Sbjct: 240 EQERVTSLFATPTHLDALAAAAEGAPLKLDSLEHVTFAGATMP-DAVLERVNQHLPGEKV 298
Query: 502 ESCGGTE-LSSAYI----QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV 556
G TE ++S Y+ G+ ++P G FS + DE + + V
Sbjct: 299 NIYGTTEAMNSLYMRDPRTGTEMRP---GFFSEVRIVRIGGSPDEALPNGEEGELVVAAA 355
Query: 557 -GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM 615
F YL + Y R D+ G + + GR DD +
Sbjct: 356 DATFTGYLNQPQATAEKLQDGWY-------------RTSDVAVVDPSGTVRILGRVDDMI 402
Query: 616 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 675
GG E+ERV +A + E I + G + + VV ++G T D L
Sbjct: 403 ISGGENIHPSEVERVLGRA-PGVTEVVVIGLPDERWG-QSVTACVVPREGETLSADALDT 460
Query: 676 IFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 713
S+L + + E P+ A NK+LRR L
Sbjct: 461 F---CRASELADFKRPRRYFFLDELPKNAMNKVLRRQL 495
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 7e-10
Identities = 134/574 (23%), Positives = 200/574 (34%), Gaps = 141/574 (24%)
Query: 211 TYKELREQVMLVAN-ALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY L +AN L GD +A +P IIYLA + G V V + S+
Sbjct: 51 TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110
Query: 270 REIATRLRVSKAKGIFT---------QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320
E+ L +AK F D IL + P +++G L PA
Sbjct: 111 AELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLA----PAT--- 163
Query: 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV----DAVVNILFSSGTTGEPKAIPW 376
LS ++ Y P+ + D + +LF+SGT G PK +
Sbjct: 164 -------SSLSLSQIIAD---------YEPLTTAITTHGDELAAVLFTSGTEGLPKGVML 207
Query: 377 TQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL 433
T L+S R YC NL W V + + L AT L+
Sbjct: 208 THNNILASER---------------AYCARLNLTW--QDVFMMPAPLGHATGFLH----- 245
Query: 434 ERSFGKFVQDAGVT---VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLW 490
GVT ++G L+ + CL L+ + R G T + D L
Sbjct: 246 -----------GVTAPFLIGARSVLLDIFTPDACLALLE--QQRCTCMLGATPFIYDLLN 292
Query: 491 LSSKAWYNAIIES-----CGGTELSSAYIQ-----GSLLQPQAFGAFSTATMTAGLVILD 540
L K + + + CGGT + + G L +G ST + +V LD
Sbjct: 293 LLEKQPAD--LSALRFFLCGGTTIPKKVARECQQRGIKLL-SVYG--STESSPHAVVNLD 347
Query: 541 EC--------GVPYP-------DDQ----PCVGEVG--------LFPLYLGASDRLLNAD 573
+ G D+ P G G +F YL + A
Sbjct: 348 DPLSRFMHTDGYAAAGVEIKVVDEARKTLPP-GCEGEEASRGPNVFMGYLDEPELTARAL 406
Query: 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633
EE ++ Y GD+ + GYI + GR D + GG SS E+E + Q
Sbjct: 407 DEEGWY-----YS-------GDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQ 454
Query: 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP--DKLKMIFSKAIQSKLNPLFKV 691
I + +++ G E +VVLK S + + K + P
Sbjct: 455 H-PKIHDACVVAMPDERLG-ERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYP---- 508
Query: 692 SLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRS 725
+ V+ + PRTAS K+ + +LR I L+
Sbjct: 509 EHIVVIDKLPRTASGKIQKFLLRKDIMRRLTQDV 542
|
Length = 547 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 8e-10
Identities = 127/582 (21%), Positives = 202/582 (34%), Gaps = 127/582 (21%)
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMP 241
++H + + +A++ E R ++Y EL ++ +A L + GD + + +P
Sbjct: 35 TDHAARYPDRIAVIDGERR--------LSYAELDQRADRLAAGLRRLGIKPGDTVLVQLP 86
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
I + A++ G V S A E+ +A + G P
Sbjct: 87 NVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQH-SGFDYRPFAR 145
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+++ P V+ + + P + HP + V
Sbjct: 146 ELVAKHPTLRHVI--VAGEAEHPSVLEAAL---------CHPAGLFTPAPPADAGEVAFF 194
Query: 362 LFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVY--CWPTNLGWVMGPVILF 416
S GTTG PK IP T S+R +AE VY P + +
Sbjct: 195 QLSGGTTGTPKLIPRTHNDYYYSVRASAEICG---FDQQTVYLCALPAAHNFPLSSPGAL 251
Query: 417 SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476
FL G T+ L E F ++ GVTV VP L
Sbjct: 252 GVFLAGGTVVLAPDPSPELCF-PLIERHGVTVTALVPPLAS------------------- 291
Query: 477 ASTGETSNVDDDLWLSSKAWYNAIIES-----CGGTELSSAYIQ------GSLLQPQAFG 525
LWL + W A + S GG LS+ + G LQ Q FG
Sbjct: 292 ------------LWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLGCQLQ-QVFG 338
Query: 526 AFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEVGLFPLYLGASDRLL--- 570
M GLV I+ G P PDD+ V + P+ G LL
Sbjct: 339 ------MAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRG 392
Query: 571 --------NAD-HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
A H F Y R GD+++R GY++V+GR D +N GG K
Sbjct: 393 PYTIRGYYRAPEHNARAFDADGFY------RSGDLVRRDPDGYLVVEGRVKDQINRGGEK 446
Query: 622 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLV-----IFVVLKKGFTSQPDKLKMI 676
++ E+E +L A+ + P+ L+ F+V+K+ +L+
Sbjct: 447 IAAEEVE-------NLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAA-QLRRF 498
Query: 677 FSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQI 717
+ + FK+ ++ V P TA K+ ++ LR ++
Sbjct: 499 LRERGLAA----FKLPDRIEFVDSLPLTAVGKIDKKALRRRL 536
|
Length = 542 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653
GD+ R GY GR D M + G + IER+ + + E A +V G
Sbjct: 386 GDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPD-ATEVAVYAVPDPVVGD 444
Query: 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 713
+V+ +VL G PD + Q L P S V+V E PRTA+ K+L+R L
Sbjct: 445 QVMAA-LVLAPGAKFDPDAFAEFLAA--QPDLGPKQWPSYVRVCAELPRTATFKVLKRQL 501
Query: 714 RDQ 716
+
Sbjct: 502 SAE 504
|
Length = 529 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 134/617 (21%), Positives = 224/617 (36%), Gaps = 133/617 (21%)
Query: 156 DRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKEL 215
R S G W ++ + + C+ D T R A TY+EL
Sbjct: 10 PRRAASIAAGHWHDRTINDDLDACV-----ASCPDKTAVTAVRLGT---GAPRRFTYREL 61
Query: 216 REQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIAT 274
V VA L + +GD ++ +P ++YLA G V+ + F RE++
Sbjct: 62 AALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSF 121
Query: 275 RLRVSKAKG-IFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWK 333
L+ +++K + + F R F + P LPA+ + V + + S++
Sbjct: 122 MLKHAESKVLVVPKTF-----RGFDHAAMARRLRPE----LPALRHVVVVG-GDGADSFE 171
Query: 334 DFLSSVDYHPRPNYYSPVYNP---VDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAE 387
L + + P+ + + D V ++++SGTTGEPK + T +++I AE
Sbjct: 172 ALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAE 231
Query: 388 GWAHIDLKVGDVYCWPTNLGWVMG-------PVILFSSFLNGATLALYQGSPLERSFGKF 440
+ L DV + + G PV+L GAT A+ Q +
Sbjct: 232 ---RLGLGADDVILMASPMAHQTGFMYGLMMPVML------GAT-AVLQDIWDPARAAEL 281
Query: 441 VQDAGVT-VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499
++ GVT + + P L R G + +R+F
Sbjct: 282 IRTEGVTFTMASTPFLTDLTRAVK-ESGRPVSSLRTFL---------------------- 318
Query: 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA------GLVIL-------------D 540
C G A I G+L++ +A A ++A G V L D
Sbjct: 319 ----CAG-----APIPGALVE-RARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTD 368
Query: 541 ECGVPY-------PDDQPC-VGEVG--------LFPLYLGASDRLLNADHEEVYFRGMPM 584
C +P D P G++G F YL LN + +F
Sbjct: 369 GCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQ--LNGTDADGWFDT--- 423
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
GD+ + GYI + GR+ D + GG VEIE + + + AI
Sbjct: 424 ---------GDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPA--IAQVAI 472
Query: 645 SVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT 703
P E FVV + G + + ++ + ++ + + P V V PRT
Sbjct: 473 VAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLV----VRDALPRT 528
Query: 704 ASNKLLRRVLRDQIKHE 720
S K+ + LR+ ++ E
Sbjct: 529 PSGKIQKFRLREMLRGE 545
|
Length = 547 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 3e-09
Identities = 49/205 (23%), Positives = 73/205 (35%), Gaps = 29/205 (14%)
Query: 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTV 244
R+ + A+V+ + TY EL V VA AL D KGD +A +
Sbjct: 21 ARRYPDKTALVFGDRS--------WTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSD 72
Query: 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL 304
+++LA AG V V + E+A L S A+ + P L
Sbjct: 73 AYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALA------PTAEAAL 126
Query: 305 GAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFS 364
P+ ++L + + RE W DF V D + IL++
Sbjct: 127 ALLPVDTLILSLV-----LGGREAPGGWLDFAD--WAEAGSVAEPDVELADDDLAQILYT 179
Query: 365 SGTTGEPK-------AIPWTQLSSI 382
SGT PK A+ +S I
Sbjct: 180 SGTESLPKGAMLTHRALIAEYVSCI 204
|
Length = 523 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 110/523 (21%), Positives = 175/523 (33%), Gaps = 107/523 (20%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+++L + +A AL G +A+ ++ V++ A +L G + +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
E +L + + T L K A L I E
Sbjct: 61 NERTNQLEDLDVQLLLTDS---------LLEEKDFQADSLDRIEAAG--------RYETS 103
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 389
LS +D + ++F+SGTTG+PKA+P T + +A G
Sbjct: 104 LS-------------------ASFNMDQIATLMFTSGTTGKPKAVPHT-FRNHYASAVGS 143
Query: 390 AHIDLKVGDVYCWPTNLGW--VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD---A 444
+L + W +L + G ILF + GATL + F + ++
Sbjct: 144 KE-NLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK------FNQLLEMIANE 196
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN-AIIES 503
VT + VP+ + + EG +R G + Y I S
Sbjct: 197 RVTHISLVPTQLNRLLD----EGGHNENLRKILLGGSAIPAP---LIEEAQQYGLPIYLS 249
Query: 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP--------DDQPCVGE 555
G TE S T L + G P D++ GE
Sbjct: 250 YGMTETCSQ---------------VTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGE 294
Query: 556 V-----GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 610
+ L YL + L A ++ +F GDI + G++ V GR
Sbjct: 295 IMVKGANLMKGYLYQGE-LTPAFEQQGWFNT------------GDIGELDGEGFLYVLGR 341
Query: 611 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP 670
DD + GG EIE V Q ++ A + P +V V ++V S
Sbjct: 342 RDDLIISGGENIYPEEIETVLYQHPG--IQEAVVVPKPDAEWGQVPVAYIV----SESDI 395
Query: 671 DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 713
+ K+I + KL + + E P AS K+LR L
Sbjct: 396 SQAKLIAY--LTEKLAKYKVPIAFEKLDELPYNASGKILRNQL 436
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 7e-09
Identities = 118/546 (21%), Positives = 193/546 (35%), Gaps = 113/546 (20%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA---D 265
+TY EL EQ +A L + GD +A+ + R + LA+ AG V I
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAV-LARNHRGFV--LALYAAGKVGARIILLNT 131
Query: 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPL 325
F+ ++A K + D ++ +L A P L A G +
Sbjct: 132 GFSGPQLAEVAAREGVKALVYDD----------EFTDLLSALPPDLGRLRAWGGNP-DDD 180
Query: 326 REQDLSWKDFLSSVDYH-----PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS 380
+ + + P+P + ++ +SGTTG PK P + S
Sbjct: 181 EPSGSTDETLDDLIAGSSTAPLPKPPKPGGI---------VILTSGTTGTPKGAPRPEPS 231
Query: 381 SIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGATLALYQGSPLERS 436
+ A + + + G+ P GW + + G+T+ L R
Sbjct: 232 PLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMAL----GSTVV------LRRR 281
Query: 437 FG-----KFVQDAGVTVLGTVPSLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDL 489
F + + T L VP ++ + L D + ++ +G S + +L
Sbjct: 282 FDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSG--SALSPEL 339
Query: 490 WLSSKAWYNAIIESC-GGTELSSAYIQGSLLQPQAFGAFSTATMTAG-------LVILDE 541
+ + ++ + G TE++ A I P+ + A T G + ILDE
Sbjct: 340 ATRALEAFGPVLYNLYGSTEVAFATIAT----PE---DLAEAPGTVGRPPKGVTVKILDE 392
Query: 542 CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFR-GMPMYKGMCLRRHGDIIKR- 599
G P G VG ++ G P +G R II
Sbjct: 393 NGNEVP-----RGVVG------------------RIFVGNGFPF-EGYTDGRDKQIIDGL 428
Query: 600 ----TVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650
VG G + V GR DD + GG E+E + + ++E A I V
Sbjct: 429 LSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPD-VVEAAVIGVDDEE 487
Query: 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSL-VKVVPEFPRTASNKLL 709
G + L FVV G D +K ++ L +KV V + E PR + K+L
Sbjct: 488 FG-QRLRAFVVKAPGAALDEDAIK----DYVRDNLAR-YKVPRDVVFLDELPRNPTGKVL 541
Query: 710 RRVLRD 715
+R LR+
Sbjct: 542 KRELRE 547
|
Length = 549 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 7e-09
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 609 GRADDTMNLGGIKTSSVEIERVCDQADESILE---TAAISVSPAGGGPEVLVIFVVLKKG 665
GR D + + G+ + EIE +Q +E TAA +V AG G + L +F V +
Sbjct: 448 GREKDMIIINGVNYYNHEIEAAVEQVP--GVEPSFTAACAVRDAGSGTDELAVFFVPRYD 505
Query: 666 FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP----EFPRTASNKLLRRVLRDQ 716
+ L +AI++ + ++ V+P +FP+T+ K+ R LR +
Sbjct: 506 LDDRLAAL----LRAIRTHVARKIGIAPAYVIPLAKEDFPKTSLGKIQRAQLRKR 556
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 7e-09
Identities = 133/711 (18%), Positives = 224/711 (31%), Gaps = 98/711 (13%)
Query: 26 FDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPPLY 85
F +L QV + G A + + L+P H ++ +YN L
Sbjct: 2903 FRDLLGQVKEQALGAQAHQDLPFEQLVEALQPERSLS-HSPLFQVMYNHQSGERAAAQL- 2960
Query: 86 WFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR----LFQKFTVEHPEAYWEIALK 141
P L G A + + + S LF TVE +W+ L+
Sbjct: 2961 --PGLHIESFAWDGAATQFDLALDTWESAEGLGASLTYATDLFDARTVERLARHWQNLLR 3018
Query: 142 EISVVFREAPKCI-----LDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKED------ 190
+ + + LD ++ + W + E + HR E+
Sbjct: 3019 GMV---ENPQRSVDELAMLDAEERGQLLEAWNATAAEYPLERGV----HRLFEEQVERTP 3071
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVII 249
+ VA+ + E R ++Y EL + +A+ L D + + + ++ V+
Sbjct: 3072 DAVALAFGEQR--------LSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVG 3123
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
LAI+ AG V + + +A L S A+ + +Q + + PL V
Sbjct: 3124 LLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL-----RLPLAQGV------ 3172
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
Q L + P + + ++++SG+TG
Sbjct: 3173 ------------------QVLDLDRGDENYAEANPAIRTMP-----ENLAYVIYTSGSTG 3209
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
+PK + + L VGD T + + LF ++GA + L
Sbjct: 3210 KPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVL-A 3268
Query: 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL-DWTKIRSFASTGETSNVD-D 487
G R V+ + + + + E T ++ GE D
Sbjct: 3269 GPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPADLQ 3328
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF-STATMTAGLVILDECGVPY 546
+ YN G TE + ++ ILD P
Sbjct: 3329 QQVFAGLPLYNLY----GPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEPV 3384
Query: 547 PDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 602
P VG +G LYLG A F P G L R GD+ +
Sbjct: 3385 P-----VGALG--ELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRAD 3437
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
G I GR D + + G + EIE + E ++V LV +VV
Sbjct: 3438 GVIEYIGRVDHQVKIRGFRIELGEIE-ARLLEHPWVREAVVLAVD-----GRQLVAYVVP 3491
Query: 663 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 713
+ + LK ++ + P + L P T + KL R+ L
Sbjct: 3492 EDEAGDLREALKAHLKASLPEYMVPAHLLFL----ERMPLTPNGKLDRKAL 3538
|
Length = 5163 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 133/566 (23%), Positives = 200/566 (35%), Gaps = 102/566 (18%)
Query: 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGY 258
D D TY EL V AN L ++ GD +A +P AG
Sbjct: 51 DPLDRPET--WTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG- 107
Query: 259 VVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAP-LKAIVL 314
+ I +IA LR + AK + T L ++ KV L A P L+ +V
Sbjct: 108 IANPINPLLEPEQIAELLRAAGAKVLVT----LGPFPGTDIWQKVAEVLAALPELRTVVE 163
Query: 315 PAIGNDVGIPLREQDLSWK--------DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
+ + P R + DF + + P +S D V + G
Sbjct: 164 VDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGG 223
Query: 367 TTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422
TTG PK T + + A W + L GD L V V + G
Sbjct: 224 TTGMPKLAQHTHGNEV---ANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARG 280
Query: 423 ATLAL-----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477
A + L Y+G + +F K V+ + L VP++ A +G D + +R +A
Sbjct: 281 AHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLR-YA 338
Query: 478 STGET---SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA----FSTA 530
G V ++ I+E G TE + + G+
Sbjct: 339 LCGAAPLPVEVFRRFEAATGV---RIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395
Query: 531 TMTAGLVILDECGVPYPDDQPCVGEVGL--------FPLYLGASDRLLNADHEEVYFRGM 582
+ VILD+ G Y D V EVG+ F Y L A H
Sbjct: 396 RVRV--VILDDAG-RYLRDCA-VDEVGVLCIAGPNVFSGY-------LEAAHN------- 437
Query: 583 PMYKGMCLRRH----GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638
KG+ L GD+ + GY + GRA D + GG IE E++
Sbjct: 438 ---KGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIE-------EAL 487
Query: 639 LETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLK-----MIFSKAIQSKLNPL 688
L A++++ A G P E+ V +V LK G ++ +L I +A K
Sbjct: 488 LRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAERAAVPK---- 543
Query: 689 FKVSLVKVVPEFPRTASNKLLRRVLR 714
V+++ P+TA K+ + LR
Sbjct: 544 ----HVRILDALPKTAVGKIFKPALR 565
|
Length = 632 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 130/575 (22%), Positives = 224/575 (38%), Gaps = 113/575 (19%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
+E + +A++W +D +E + T+ +L++ AN + KGD + +T++
Sbjct: 28 DEEPDKLALIWCDDDGEEK---IFTFGDLKDYSNKAANFFKALGIGKGDTVM----LTLK 80
Query: 246 AVIIYLAIILA----GYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
+ +LA G + + A++I R+ + K I + G P +
Sbjct: 81 RRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMI-----VCIGEDGVPEH- 134
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD----YHPRPNYYSPVYNPVDA 357
+ AAP + VG P+ E W DF ++ RP D
Sbjct: 135 -IDEAAPECGSPTLLV--LVGDPVPE---GWIDFDKEIENASPDFERPT--GNDATCNDD 186
Query: 358 VVNILFSSGTTGEPKAIPWTQLSSIR--CTAEGWAHIDLKVGDVYCWPTNLGW---VMGP 412
++ + F+SGTTG PK + + TA+ W ++K G ++ + GW V G
Sbjct: 187 ILLVYFTSGTTGMPKMVEHDHTYPLGHIVTAKYWQ--NVKEGGLHLTVADTGWGKAVWGK 244
Query: 413 VILFSSFLNGATLALYQGSPLERSFGKFVQDA--------GVTVLGTVPS----LVKAWR 460
L+ ++ GA + +Y + KF GVT P+ L+K
Sbjct: 245 --LYGQWIAGAAVFVY-------DYDKFDPKNLLEKIEKYGVTTFCAPPTIYRFLIKE-- 293
Query: 461 NTNCLEGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTELSSAYIQGSLL 519
L D + +R + GE N + + + ++E G TE + +
Sbjct: 294 ---DLSKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGI--KLMEGFGQTETTLTIATFPWM 348
Query: 520 QPQAFGAFSTATMTAGLVILDECGVPYPDDQPC-VGE-------------VGLFPLYLGA 565
+P+ G+ + + I+D PD + C VGE +GLF Y
Sbjct: 349 EPKP-GSMGKPSPGYDIDIID------PDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRD 401
Query: 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625
+R H+ Y GD GY+ GRADD + G +
Sbjct: 402 PERTAEVWHDGYYHT-------------GDTAWMDEDGYLWFVGRADDLIKSSGYRIGPF 448
Query: 626 EIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ-- 682
E+E Q ++LE A V P G +V+ +VL KG+ ++LK K +Q
Sbjct: 449 EVESALIQ-HPAVLECAVTGVPDPIRG--QVVKATIVLTKGYEPS-EELK----KELQDH 500
Query: 683 -SKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRD 715
K+ +K +++ V E P+T S K+ R +R+
Sbjct: 501 VKKVTAPYKYPRIIEFVDELPKTISGKIRRVEIRE 535
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 6e-08
Identities = 129/596 (21%), Positives = 213/596 (35%), Gaps = 91/596 (15%)
Query: 151 PKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLM 210
+ R SK G W ++ + + + D +R+ AV
Sbjct: 3 AVLLAPRRAASKAAGLWRDRTINDHFDAAV-----ANCPDKPALTAYRDG---HGAVRRF 54
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
+Y+EL +V +A L + +GD ++ +P +YLA G V+ + F
Sbjct: 55 SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGI----- 323
RE++ L + +K +F + RG + ++ P L+ +V+ D
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLM 173
Query: 324 -PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---L 379
P R+ L+ PRP SP D V ++++SGTTGEPK + T
Sbjct: 174 TPERDDTPDAAAILAG----PRP---SP-----DDVTQLIYTSGTTGEPKGVMHTANTLF 221
Query: 380 SSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK 439
S+I AE ++L GDV + P+ + F+ G + L
Sbjct: 222 SNIHPYAE---RLELGGGDVILMAS-------PMAHQTGFMYGLMMPL------------ 259
Query: 440 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR-SFASTGETSNVDDDLWLSSKAWYN 498
+L L W E + T + + AST +++ + S +
Sbjct: 260 --------ILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPS 311
Query: 499 AIIESCGGTELSSAYIQGS-----LLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553
C G + ++ + L A+G +T D +P
Sbjct: 312 LFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLP 371
Query: 554 G-EVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRH------------GDIIKRT 600
G EV + +L + + RG + G R H GD+ +
Sbjct: 372 GVEVKVID---ANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQD 428
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
GYI + GR+ D + GG VEIE + Q + AI P E V
Sbjct: 429 AEGYIRINGRSKDVIIRGGENIPVVEIENLLYQ--HPAVAQVAIVAYPDERLGERACAVV 486
Query: 661 VLKKGFTSQPDKLKMI-FSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715
V K G T D M+ F KA + L + ++VV P T + K+ + LR+
Sbjct: 487 VPKPGCTL--DFAAMVAFLKAQKVALQ--YIPERLEVVDALPATPAGKIQKFRLRE 538
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 592 RHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPA 649
+ GD+ GY + GR DD + GG K S++EIE + E A I V P
Sbjct: 317 KTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALL-EHPGVAEVAVIGVPDPD 375
Query: 650 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKL 708
G E +V VV + G +L+ + KL P +K+ V VV E PR A K+
Sbjct: 376 WG--EAVVAVVVPEAGAALTLAELR----AWAREKLAP-YKIPKRVIVVDELPRNAMGKV 428
Query: 709 LR 710
+
Sbjct: 429 QK 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-07
Identities = 122/580 (21%), Positives = 196/580 (33%), Gaps = 128/580 (22%)
Query: 185 HRRKED------NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IA 237
H+ ED VA+V+ E +TY EL + +A+ L + + +
Sbjct: 1577 HQLIEDQAAATPEAVALVFGEQE--------LTYGELNRRANRLAHRLIALGVGPEVLVG 1628
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I + ++ V+ LAI+ AG V + + +A + S + + TQ + +
Sbjct: 1629 IAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQA---RL 1685
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP-VD 356
PL L+++VL +Q+ W ++ + N P N
Sbjct: 1686 PL------PDGLRSLVL------------DQEDDW------LEGYSDSN---PAVNLAPQ 1718
Query: 357 AVVNILFSSGTTGEPKA-----------IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 405
+ ++++SG+TG PK + TQ + A+ DV W
Sbjct: 1719 NLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWE-- 1776
Query: 406 LGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVKAW--- 459
LF +NGA L + R + +Q VT L VPS+++
Sbjct: 1777 ---------LFWPLINGARLVIAPPG-AHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQM 1826
Query: 460 --RNTNCLEGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTE--LSSAYI 514
+ + +R GE V+ WL + G TE + +
Sbjct: 1827 DEQVEHP------LSLRRVVCGGEALEVEALRPWLERLPD-TGLFNLYGPTETAVDVTHW 1879
Query: 515 QGSLLQPQAFGAFSTATMTA--GLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNA 572
+ + A ILD P P GE LYLG L
Sbjct: 1880 TCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVP--IGVAGE-----LYLGG-VGLARG 1931
Query: 573 DHEEV-----YFRGMPMYK-GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626
F P G L R GD+ + G I GR D + + G + E
Sbjct: 1932 YLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGE 1991
Query: 627 IE-RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL 685
IE R+ +Q + E I+ A G + LV +VV P ++ Q L
Sbjct: 1992 IEARLREQGG--VREAVVIAQDGANG--KQLVAYVV--------PTDPGLVDDDEAQVAL 2039
Query: 686 NPLFKVSLVKVVPEF------------PRTASNKLLRRVL 713
+ K L +PE+ P T + KL R+ L
Sbjct: 2040 RAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKAL 2079
|
Length = 3956 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653
GD+ GYI V R D + GG +S E+E ++ E A I + P
Sbjct: 400 GDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYT-HPAVAEVAVIGL------P 452
Query: 654 -----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNK 707
E + VV K G T D+L + +A +L FKV V V E PR S K
Sbjct: 453 DPKWIEAVTAVVVPKAGATVTEDEL-IAHCRA---RLAG-FKVPKRVIFVDELPRNPSGK 507
Query: 708 LLRRVLRDQIKH 719
+L+R LR++
Sbjct: 508 ILKRELRERYAG 519
|
Length = 523 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 26/183 (14%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL E A L GD +A+ +P + I++ I+ G V V ++ F
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI-------VLPAIGNDVG 322
E++ L + A+ + D + P+ +V L+ + VLPA
Sbjct: 120 HELSYELNDAGAEVLLALDQLA------PVVEQVRAETSLRHVIVTSLADVLPAEPT--- 170
Query: 323 IPL-------REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIP 375
+PL R D L ++ P P +DA+ + ++ GTTG PK
Sbjct: 171 LPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPA--LDALAALNYTGGTTGMPKGCE 228
Query: 376 WTQ 378
TQ
Sbjct: 229 HTQ 231
|
Length = 567 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 77/324 (23%), Positives = 104/324 (32%), Gaps = 106/324 (32%)
Query: 354 PVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCW-------- 402
D V S G+TG PK IP T S+R + E CW
Sbjct: 180 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVE------------ICWLTQQTRYL 227
Query: 403 ---PTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAW 459
P + + F G + L F ++ VTV VP V
Sbjct: 228 CALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCF-PLIERHKVTVTALVPPAVA-- 284
Query: 460 RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES-----CGGTELSSAYI 514
LW+ + + A + S GG + S+A
Sbjct: 285 -----------------------------LWMQAASKSRADLSSLKLLQVGGAKFSAAAA 315
Query: 515 Q------GSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEV 556
+ G LQ Q FG M GLV I G P PDD+ V +
Sbjct: 316 RRVPAVFGCQLQ-QVFG------MAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDD 368
Query: 557 GLFPLYLGASDRLL------------NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604
P+ G + LL +H F Y GD+++ T GY
Sbjct: 369 HGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFY------YTGDLVRLTPEGY 422
Query: 605 IIVQGRADDTMNLGGIKTSSVEIE 628
I+V GRA D +N GG K ++ EIE
Sbjct: 423 IVVVGRAKDQINRGGEKIAAEEIE 446
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 128/577 (22%), Positives = 205/577 (35%), Gaps = 136/577 (23%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY EL +QV A L + GD +AI +P + ++ + A++ G VVV +
Sbjct: 58 TTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYT 117
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV-------LPAIGN-D 320
A E+ A+ D + P ++ PL+ IV +P +
Sbjct: 118 AHELEHPFEDHGARVAIVWD------KVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLA 171
Query: 321 VGIPL------REQ-------DLSWKDFLSS-------VDYHPRPNYYSPVYNPVDAVVN 360
+ +P+ R + W+ + + HPRP A+
Sbjct: 172 LRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDV------AL-- 223
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG----WVMGPVILF 416
IL++SGTTG+PK T + A+G A W LG V+ + +F
Sbjct: 224 ILYTSGTTGKPKGAQLTHRNLFANAAQGKA-----------WVPGLGDGPERVLAALPMF 272
Query: 417 SSF---LNGATLALYQGSPLERSFGKF----VQDA----GVTVLGTVPSLVKAWRNTNCL 465
++ L TLA+ G L + DA T L VP L +
Sbjct: 273 HAYGLTLCL-TLAVSIGGELVL-LPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEE 330
Query: 466 EGLDWTKIR---SFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQ 522
G+D + +R S A S V+ LW ++E G TE S P
Sbjct: 331 RGVDLSGVRNAFSGAMALPVSTVE--LWEKLTGGL--LVEGYGLTETS----------PI 376
Query: 523 AFGAFSTATMTAGLVILDECGVPYPD-------------DQPCVGEVG--------LFPL 561
G + G V GVP+PD P GE G +F
Sbjct: 377 IVGNPMSDDRRPGYV-----GVPFPDTEVRIVDPEDPDETMP-DGEEGELLVRGPQVFKG 430
Query: 562 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
Y + + + + R GD++ G+I + R + + GG
Sbjct: 431 YWNRPEETAKSFLDGWF-------------RTGDVVVMEEDGFIRIVDRIKELIITGGFN 477
Query: 622 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 681
E+E V + + + A + + P G E +V VVL+ G P+ L+ + +
Sbjct: 478 VYPAEVEEVLREHP-GVEDAAVVGL-PREDGSEEVVAAVVLEPGAALDPEGLRAYCREHL 535
Query: 682 QSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQI 717
+KV V E PR K+ RR +R+++
Sbjct: 536 TR-----YKVPRRFYHVDELPRDQLGKVRRREVREEL 567
|
Length = 573 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 7e-07
Identities = 115/518 (22%), Positives = 182/518 (35%), Gaps = 82/518 (15%)
Query: 233 GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 292
GD +A+ M V+ LA A VVV + + E R + + A+ + D
Sbjct: 68 GDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLI-DADGP 126
Query: 293 GGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV- 351
R P PL V G G D P P +P
Sbjct: 127 HDRAEPTTR----WWPLTVNVGGDSGPSGGTLSVHLD---------AATEPTPATSTPEG 173
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD--VYCWPTNL 406
P DA+ I+F+ GTTG PK +PWT SS+R G+ L D V P
Sbjct: 174 LRPDDAM--IMFTGGTTGLPKMVPWTHANIASSVRAIITGY---RLSPRDATVAVMPLYH 228
Query: 407 GWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE 466
G + +L + GA L +G +F ++ G T VP++ + E
Sbjct: 229 GHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATE 288
Query: 467 GLDWTK-----IRSFAS--TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL 519
IRS ++ T ET+ + + ++ + G TE A Q +
Sbjct: 289 PSGRKPAALRFIRSCSAPLTAETAQALQTEFAA------PVVCAFGMTE---ATHQVTTT 339
Query: 520 QPQAFGAFSTATMTAGLVILD---ECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNADHE 575
Q + G ++ GLV + + D P G VG
Sbjct: 340 QIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVG------------------ 381
Query: 576 EVYFRGMPMYKGMC-------------LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 622
EV+ RG + +G R GD+ + G + ++GR + +N GG K
Sbjct: 382 EVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKI 441
Query: 623 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 682
S +E V +++E A V G V + +V ++ ++L + +
Sbjct: 442 SPERVEGVLASHP-NVMEAAVFGVPDQLYGEAVAAV-IVPRESAPPTAEEL----VQFCR 495
Query: 683 SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720
+L + + P TA L RR + +Q H
Sbjct: 496 ERLAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFGHS 533
|
Length = 534 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ EL E+V +A L + GD +AI VI LAI+ AG V V I + +
Sbjct: 6 ITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSS 65
Query: 269 AREIATRLRVSKAKGIFTQD 288
E+A L S A+ +F +D
Sbjct: 66 PEEVAYILNDSGARVVFVED 85
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 68/283 (24%), Positives = 112/283 (39%), Gaps = 35/283 (12%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY L E+V+ +A+ L + ++G+ +AI + + V LAG V V I
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFP-----LYSKVLGAAPLKAIVLPAIGNDVGI 323
A ++A L + + T L L + ++ P A
Sbjct: 86 AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPA-- 143
Query: 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 383
SW L+ D P PV + A IL++SG+TG PK + + ++
Sbjct: 144 -------SWPKLLALGDADPPH----PVIDSDMAA--ILYTSGSTGRPKGVVLSH-RNLV 189
Query: 384 CTAEGWAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ 442
A+ A ++ + D L + G L ++F GAT+ L+ L R K ++
Sbjct: 190 AGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHD-YLLPRDVLKALE 248
Query: 443 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-----IRSFASTG 480
G+T L VP L W L LDW + +R ++G
Sbjct: 249 KHGITGLAAVPPL---WAQ---LAQLDWPESAAPSLRYLTNSG 285
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 51/173 (29%), Positives = 70/173 (40%), Gaps = 26/173 (15%)
Query: 563 LGASDRLLNADH---EEVYFRGMPMYKG-----------MCLRRHG-----DIIKRTVGG 603
A LLNAD E V G ++G M RHG D+ R G
Sbjct: 338 FDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM---RHGMYWSGDLAYRDADG 394
Query: 604 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK 663
+I GR D M + G S+ IER+ +I A +V G +V+ +VL+
Sbjct: 395 WIYFAGRTADWMRVDGENLSAAPIERIL-LRHPAINRVAVYAVPDERVGDQVMAA-LVLR 452
Query: 664 KGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 716
G T PD A Q L V++ + P TA+NK+L+R L Q
Sbjct: 453 DGATFDPDAFAAFL--AAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQ 503
|
Length = 540 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 65/289 (22%), Positives = 102/289 (35%), Gaps = 62/289 (21%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY ++ VA L + +GD + + +P V+ +L G V + +
Sbjct: 51 YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYT 110
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + + S AK I TQ K+ G A + + I + L
Sbjct: 111 PAEIAKQAKASGAKLIITQS---------CYVDKLKGLAEDDGVTVVTIDDPPEGCLHFS 161
Query: 329 DLSWKDF--LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 386
+L+ D L V+ P D VV + +SSGTTG PK + T + A
Sbjct: 162 ELTQADENELPEVEISP------------DDVVALPYSSGTTGLPKGVMLTHKGLVTSVA 209
Query: 387 EGWAHID-------LKVGDV----------YCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
+ +D DV Y + +L GA + +
Sbjct: 210 Q---QVDGENPNLYFHSDDVILCVLPMFHIYSLNS---------VLLCGLRVGAAILIMP 257
Query: 430 ----GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR 474
G+ LE +Q VT+ VP +V A + +E D + IR
Sbjct: 258 KFEIGALLE-----LIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIR 301
|
Length = 537 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651
R GD+ G++ + R D + GG +S E+ERV + E + E A I V
Sbjct: 376 RSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPE-VAEAAVIGVHDDRW 434
Query: 652 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLR 710
G + + VVL G T + L + + S FKV +KV E PR S K+L+
Sbjct: 435 GERITAV-VVLNPGATLTLEALDRHCRQRLAS-----FKVPRQLKVRDELPRNPSGKVLK 488
Query: 711 RVLRDQI 717
RVLRD++
Sbjct: 489 RVLRDEL 495
|
Length = 497 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E +A L + +KG +AI MP ++ + A++ AGYVVV++ +
Sbjct: 49 ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYT 108
Query: 269 AREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 323
RE+ +L+ S A+ I ++F +VL +K +V+ ++G+ +G
Sbjct: 109 PRELEHQLKDSGAEAIVVLENFA-------TTVQQVLAKTAVKHVVVASMGDLLGF 157
|
Length = 557 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 109/541 (20%), Positives = 194/541 (35%), Gaps = 104/541 (19%)
Query: 209 LMTYKELREQVMLVANAL--DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266
MTYK+L E V VA L + KG+ IAI ++ +++ AI + V +
Sbjct: 27 EMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIR 86
Query: 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR 326
E+ +L+ S +F + + + + + V I
Sbjct: 87 LTENELIFQLKDSGTTVLFVE----------KTFQNMALSMQKVSYVQRVI--------- 127
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 386
L ++ N+ A I ++SGTTG+PK TQ +
Sbjct: 128 -----SITSLKEIEDRKIDNFVEK---NESASFIICYTSGTTGKPKGAVLTQENMFWNAL 179
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFS--SFLNGATLALYQGSPLERSFGKFVQDA 444
IDL + D L + +G + LF+ + G + + + ++ ++
Sbjct: 180 NNTFAIDLTMHDRSIVLLPL-FHIGGIGLFAFPTLFAGGVIIVPRKFEPTKAL-SMIEKH 237
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504
VTV+ VP++ +A N + E + +R F + G
Sbjct: 238 KVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPE------------------- 278
Query: 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVG---LFPL 561
EL +I L Q FG T T ++ +E D + VG +G LF
Sbjct: 279 ---ELMREFIDRGFLFGQGFGM--TETSPTVFMLSEE------DARRKVGSIGKPVLFCD 327
Query: 562 YLGASDRLLNADHE--------EVYFRGMPMYKGMCLRRH-------------GDIIKRT 600
Y L++ + E+ RG + K R GD+ +
Sbjct: 328 Y-----ELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVD 382
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
G++ + GR + + GG +E+E+V ++ + E A + G E+ + F+
Sbjct: 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLS-DVYEVAVVGRQHVKWG-EIPIAFI 440
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK---VVPEFPRTASNKLLRRVLRDQI 717
V K +I I+ L K + K + E P+ A+ K+ + L +Q+
Sbjct: 441 VKKSSSV-------LIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQL 493
Query: 718 K 718
K
Sbjct: 494 K 494
|
Length = 496 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-ETAAISVSPAGGGPEVLVIFV 660
G +++ GRA D + + G +IERV +Q + L AA V E +VIFV
Sbjct: 381 NGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVIFV 440
Query: 661 VLKK---GFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRVLRD 715
++ FT + I+ +N +++ V+P P+T S K+ R L
Sbjct: 441 EYRQSLDDFTP--------LALKIKRHVNKKMGLNIDHVIPVRSIPKTTSGKIQRYKLAQ 492
Query: 716 QIK 718
Q
Sbjct: 493 QFL 495
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 35/190 (18%)
Query: 538 ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC-------- 589
++DE PD +P GE+ LL AD + G Y GM
Sbjct: 356 VVDEHDQELPDGEP--GEL------------LLRADEPFAFATG---YFGMPEKTVEAWR 398
Query: 590 -LRRH-GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647
L H GD + R G+ R D + G SS E+E+V + ++ A V
Sbjct: 399 NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVL-LSHPAVAAAAVFPVP 457
Query: 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASN 706
G EV+ VVL+ G +P L + + +L F V V+ V P+T +
Sbjct: 458 SELGEDEVMAA-VVLRDGTALEPVAL----VRHCEPRL-AYFAVPRYVEFVAALPKTENG 511
Query: 707 KLLRRVLRDQ 716
K+ + VLR+Q
Sbjct: 512 KVQKFVLREQ 521
|
Length = 542 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 61/288 (21%), Positives = 97/288 (33%), Gaps = 83/288 (28%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
+ A++ +TY EL + +A AL + GD +A+ MP ++
Sbjct: 2 DATAVIDGAGT--------LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVA 53
Query: 250 YLAIILAGYVVVSI-ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP 308
L I+LAG V I D A R A L + A+ + T
Sbjct: 54 VLGILLAGAAYVPIDPDQPAER-RAAILARAGARAVLTDP------------------GL 94
Query: 309 LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 368
+ P + D + P D + ++F+SG+T
Sbjct: 95 AQPEEAPDLLVVA-------DDAAAA---------ESPAPPPPRVDPDDLAYVIFTSGST 138
Query: 369 GEPKAIPWTQ---LSSIRCTAEGWA-------------HIDLKVGDVYCWPTNLGWVMGP 412
GEPK + T +++I + H DL V D++
Sbjct: 139 GEPKGVMITHRAAVNTILDVNRRFGVGPADRVLALSALHFDLSVYDIFG----------- 187
Query: 413 VILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTVPSLV 456
S+ GA L L R + + VQ GVTV +VP+L+
Sbjct: 188 --ALSA---GAALVL--PDEARRRDPDHWAELVQRHGVTVWNSVPALM 228
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 88/387 (22%), Positives = 151/387 (39%), Gaps = 71/387 (18%)
Query: 356 DAVVNILFSSGTTGEPK--AIP---------WTQLSSIRCTAEGWAHI--------DLKV 396
D + ++++SG+TG PK AI W +AE A + DL V
Sbjct: 105 DDLAYVIYTSGSTGRPKGVAIEHRNAAALLQWAAAV---FSAEELAGVLAATSICFDLSV 161
Query: 397 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLV 456
+++ P + G G V+L + L A L + E VT++ TVPS
Sbjct: 162 FEIFV-PLSTG---GRVVLADNAL--ALPDLP--AKAE-----------VTLINTVPSAA 202
Query: 457 KAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQG 516
+ + L + +R+ GE + L + + G +E + Y
Sbjct: 203 RELLRHDALP----SSVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSE-DTTYSTY 257
Query: 517 SLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLN 571
+ ++P A S AG +LD P P P +G G+ YLG + L
Sbjct: 258 AEVEPGASRTPSIGRPLAGTQAYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPE--LT 315
Query: 572 AD----HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627
A+ + G +Y R GD+++R G + GR DD + + G + EI
Sbjct: 316 AERFLPNPFAGSPGERLY------RTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEI 369
Query: 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 687
E ++ + E +++ A G + LV ++V G + L+ + ++L P
Sbjct: 370 EA-ALRSIPGVAEAVVVAIGDAAGDRQ-LVAYIVADPGAAIDIEDLR----ARLATRL-P 422
Query: 688 LFKV-SLVKVVPEFPRTASNKLLRRVL 713
+ V S + P T + K+ R+ L
Sbjct: 423 AYMVPSRFVRLDALPLTPNGKIDRKAL 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 53/205 (25%), Positives = 81/205 (39%), Gaps = 41/205 (20%)
Query: 211 TYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y+EL E+ +A L KGD + + M + + VI Y AI+ A VVV +
Sbjct: 37 SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96
Query: 269 AREIATRLRVSKAK-GIFTQDFILRGGRKFPLYSKVL---GAAPLK-AIV------LPAI 317
E+A + S A+ I + L KV G L+ IV LPA
Sbjct: 97 EEELAHYVTDSGARVAIVGSE----------LAPKVAPAVGNLRLRHVIVAQYSDYLPAE 146
Query: 318 GND-------VGIPLR----EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
PL+ ++WK+ L++ P P+ P D + + ++SG
Sbjct: 147 PEIAVPAWLRAEPPLQALAPGGVVAWKEALAA-GLAPPPHTAGP-----DDLAVLPYTSG 200
Query: 367 TTGEPKAIPWTQLSSIRCTAEGWAH 391
TTG PK T ++ A G
Sbjct: 201 TTGVPKGCMHTH-RTVMANAVGSVL 224
|
Length = 546 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 92/388 (23%), Positives = 134/388 (34%), Gaps = 54/388 (13%)
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV-Y-CWPT--NLGWVM 410
VD I ++SGTTG PKA + +R A LK DV Y C P + +
Sbjct: 81 VDPAFYI-YTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTV 139
Query: 411 GPVILFSSFLNGATLALYQGSPLERSFG--KF---VQDAGVTVLGTVPSLVKAWRNTNCL 465
G S+ GA+LAL R F +F V+ G T V L + N
Sbjct: 140 GWS---SALAAGASLAL------RRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEK 190
Query: 466 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQGSLLQPQA 523
+R G D+W K + I+E G TE + +I P A
Sbjct: 191 PDDRDHPLRKIIGNGLR----PDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNK-PGA 245
Query: 524 FGAFSTATMTAGLVI---LDECGVPYPDDQPCV----GEVGLFPLYLGASDRLL------ 570
G A V+ ++ + C+ GEVGL LG
Sbjct: 246 VGR---LPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGL---LLGEITDRNPFDGYT 299
Query: 571 -NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 629
+ E+ R + KG GD+++R GY R DT G S+ E+E
Sbjct: 300 DDEATEKKILRDV-FKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEE 358
Query: 630 VCDQADESILETAAISVS-PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
V + + E V P G + + L G P + + + PL
Sbjct: 359 VLAKH-PGVEEANVYGVEVPGTEGRAGMAA-LTLAPGAAFDPQAFAAHLDEQLPAYARPL 416
Query: 689 FKVSLVKVVPEFPRTASNKLLRRVLRDQ 716
F ++V T + K + LR +
Sbjct: 417 F----LRVQAAMETTGTFKYQKTDLRKE 440
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-06
Identities = 123/543 (22%), Positives = 194/543 (35%), Gaps = 104/543 (19%)
Query: 210 MTYKELREQVMLVANALDTMFSK-GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y+E+REQV+ +AN L K GD++A+ +P +V + AI+ AG + + +
Sbjct: 484 FSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYP 543
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ L ++ + T L P ++ V L A PL+
Sbjct: 544 DDRLKMMLEDARPSLLITTADQL------PRFADVPDLTSLCYNAPLAPQG--AAPLQL- 594
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK-------AIP----WT 377
+P+ Y I+F+SG+TG PK AI W
Sbjct: 595 --------------SQPH--HTAY--------IIFTSGSTGRPKGVMVGQTAIVNRLLWM 630
Query: 378 QLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY----QGSPL 433
Q H L DV T + + F F+ GA L + PL
Sbjct: 631 Q-----------NHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPL 679
Query: 434 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI---RSFASTGETSNVD-DDL 489
+F + GVT VPS++ A+ + EG + + F S GE D
Sbjct: 680 A--MQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCS-GEALPADLCRE 736
Query: 490 WLSSKAWYNAIIESC-GGTELS---SAYIQGSLLQPQAFGAFSTATM-------TAGLVI 538
W + A + + G TE + S Y + A +++ GL I
Sbjct: 737 W---QQLTGAPLHNLYGPTEAAVDVSWYPAF----GEELAAVRGSSVPIGYPVWNTGLRI 789
Query: 539 LDECGVPYPDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPMYKGMCLRRHG 594
LD P P G G LYL A L D F P G + R G
Sbjct: 790 LDARMRPVP-----PGVAG--DLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTG 842
Query: 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC----DQADESILETAAISVSPAG 650
D+ + G + GR+DD + + G + EI+R D + G
Sbjct: 843 DVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATG 902
Query: 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLR 710
G LV ++V + G L+ ++ +L P ++ + + P +A+ KL R
Sbjct: 903 GDARQLVGYLVSQSGLPLDTSALQ----AQLRERLPPHMVPVVLLQLDQLPLSANGKLDR 958
Query: 711 RVL 713
+ L
Sbjct: 959 KAL 961
|
Length = 1296 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
GYI ++ R+ D + GG SS+E+E V + ++LE A ++ G E FVVL
Sbjct: 415 GYIEIKDRSKDIIISGGENISSIEVEGVLYKHP-AVLEAAVVARPDEKWG-ETPCAFVVL 472
Query: 663 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715
K G + ++L + + + KL FKV E P+TA+ K+ + VLR+
Sbjct: 473 KPGASVTEEEL-IEYCRE---KL-AHFKVPKTVEFVELPKTATGKIQKFVLRE 520
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 1e-05
Identities = 119/520 (22%), Positives = 200/520 (38%), Gaps = 72/520 (13%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+ Y EL + +A+AL + + M ++ V+ LAI+ AG V + +
Sbjct: 537 LDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYP 596
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A +A L S + + +Q + GRK PL AA ++ + L
Sbjct: 597 AERLAYMLEDSGVQLLLSQSHL---GRKLPL------AAGVQVLDLDRPA---------- 637
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK--AIPWTQLSSIRCTA 386
+W + S + N + Y ++++SG+TG+PK LS+ C
Sbjct: 638 --AWLEGYSEENPGTELNPENLAY--------VIYTSGSTGKPKGAGNRHRALSNRLC-- 685
Query: 387 EGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ-- 442
W L VGD T + + F ++GA L + R K V+
Sbjct: 686 --WMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVV-AAPGDHRDPAKLVELI 742
Query: 443 -DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501
GV L VPS+++A+ + T +R +GE D + +K +
Sbjct: 743 NREGVDTLHFVPSMLQAFLQDEDVA--SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLY 800
Query: 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL--VILDECGVPYPDDQPCVGEV--- 556
G TE + + ++ + + A L ILD P P +GE+
Sbjct: 801 NLYGPTEAAIDVTHWTCVE-EGGDSVPIGRPIANLACYILDANLEPVP--VGVLGELYLA 857
Query: 557 --GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDT 614
GL Y G L A+ F P G + R GD+ + G I GR D
Sbjct: 858 GRGLARGYHGRPG--LTAER----FVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQ 911
Query: 615 MNLGGIKTSSVEIE-RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL 673
+ L G++ EIE R+ + + E A ++V + LV +VVL+ + L
Sbjct: 912 VKLRGLRIELGEIEARLLEH--PWVREAAVLAV-----DGKQLVGYVVLESEGGDWREAL 964
Query: 674 KMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 713
K + ++ + P ++L ++ P T + KL R+ L
Sbjct: 965 KAHLAASLPEYMVPAQWLALERL----PLTPNGKLDRKAL 1000
|
Length = 5163 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 211 TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+ EL+E+ AN L D +GD +A+ +P + L I G V +
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61
Query: 270 REIATRLRVSKAKGIFTQD 288
++I RL + A+ I T
Sbjct: 62 KDIRYRLERAGARAIVTSA 80
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 88/391 (22%), Positives = 134/391 (34%), Gaps = 90/391 (23%)
Query: 366 GTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLN 421
GTTG PK + + + A W L GDV L V G ++ +
Sbjct: 12 GTTGAPKLARHSHRNEV---ANAWMAALLSGLGPGDVLLNGLPLFHVGGAIVTGLAPLAR 68
Query: 422 GATLAL-----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476
GAT+ L ++ + +F K V+ VT+L VP+++ A L D + +R +
Sbjct: 69 GATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVP-LGDADISSLR-Y 126
Query: 477 ASTGET---SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMT 533
A TG V + ++E G TE + S
Sbjct: 127 ALTGAAPLPVEVARRFEAVTGV---PVVEGYGMTEGTGV---------------SAINPR 168
Query: 534 AGLVILDECGVPYP--------------DDQPC-VGEVG--------LFPLYLGASDRLL 570
G G+ P + C GEVG +FP YL +
Sbjct: 169 GGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAH--- 225
Query: 571 NADH--EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628
NA E+ + GD+ + GY+ + GRA D + GG IE
Sbjct: 226 NAGARLEDGWLNT------------GDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIE 273
Query: 629 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL-----KMIFSKAIQS 683
++ AA+ A G E+ V +V LK G T +L I +A
Sbjct: 274 EAL-LRHPAVALAAAVGRPDAYAG-ELPVAYVQLKPGATVTEGELLAFVKARIPERAAVP 331
Query: 684 KLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714
K + ++ P TA K+ + LR
Sbjct: 332 K--------AIYIIDALPLTAVGKIFKPRLR 354
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 114/529 (21%), Positives = 190/529 (35%), Gaps = 84/529 (15%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++Y EL + +A+ L +AI + V+ LA++ AG V + ++
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYP 2088
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A +A L S A + TQ +L PL A V +PL ++
Sbjct: 2089 AERLAYMLEDSGAALLLTQ-------------RHLLERLPLPAGV-------ARLPL-DR 2127
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK--AIPWTQLSSIRCTA 386
D W D+ + P + + ++++SG+TG PK A+ L + C A
Sbjct: 2128 DAEWADYPDT---APAVQLAG------ENLAYVIYTSGSTGLPKGVAVSHGALVA-HCQA 2177
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDA 444
G + +L D + + F LNGA + + E+ + + ++
Sbjct: 2178 AGERY-ELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDE-MERH 2235
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD-DLW---LSSKAWYNAI 500
GVT+L P ++ +G +R + GE L L +N
Sbjct: 2236 GVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGY 2294
Query: 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPDDQPCV 553
G TE A + L + + A + G ILD
Sbjct: 2295 ----GPTE---AVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLA--PGMA 2345
Query: 554 GEVGLFPLYLGAS-------DR-LLNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTVGGY 604
GE LYLG +R L A+ F P G L R GD+ + G
Sbjct: 2346 GE-----LYLGGEGLARGYLNRPGLTAER----FVPDPFSASGERLYRTGDLARYRADGV 2396
Query: 605 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664
+ GR D + + G + EIE QA ++ E ++ A G + LV +VV
Sbjct: 2397 VEYLGRIDHQVKIRGFRIELGEIE-ARLQAHPAVREAVVVAQDGASG--KQLVAYVVPDD 2453
Query: 665 GFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 713
+L+ + + + + P V L ++ P + KL R+ L
Sbjct: 2454 AAEDLLAELRAWLAARLPAYMVPAHWVVLERL----PLNPNGKLDRKAL 2498
|
Length = 5163 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 27/182 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
T+++L + V +A L + GD + I P ++ A G ++V+I ++
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-----------------LKA 311
A E+ L S + + D + ++ + P L+
Sbjct: 106 ASELEYALGQSGVRWVICAD----AFKTSDYHAMLQELLPGLAEGQPGALACERLPELRG 161
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
+V A G + + + +S R D +NI ++SGTTG P
Sbjct: 162 VVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDR-----DDPINIQYTSGTTGFP 216
Query: 372 KA 373
K
Sbjct: 217 KG 218
|
Length = 558 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 4e-05
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
G++ + RADDT +GG+ E+ER+ + + ++ E A ++V + G L F+V
Sbjct: 379 GWVTYRCRADDTEVIGGVNVDPREVERLIIEDE-AVAEAAVVAVRESTGA-STLQAFLVA 436
Query: 663 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVS-LVKVVPEFPRTASNKLLRRVLRDQ 716
G T ++ + + ++L+ FKV VV PRT + KL+R LR Q
Sbjct: 437 TSGATIDGSVMRDLHRGLL-NRLSA-FKVPHRFAVVDRLPRTPNGKLVRGALRKQ 489
|
Length = 705 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 22/185 (11%)
Query: 536 LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNAD---HEEVYFRGMPMYKGMC 589
+ +LDE P P P +G G+ YLG + L A+ + G +Y
Sbjct: 269 VYVLDEDLQPVPPGVPGELYIGGDGVARGYLGRPE--LTAERFVPDPFDDPGGRLY---- 322
Query: 590 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649
R GD+++ G + GRADD + + G + EIE + A + V
Sbjct: 323 --RTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEAALRAHPG--VADAVVVVREE 378
Query: 650 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKL 708
G G + LV +VV K G + L+ A+++ L P + V + + E P T + K+
Sbjct: 379 GPGDQRLVAYVVPKAGAAPDAEALR----AALRATL-PAYMVPAAFVQLDELPLTPNGKV 433
Query: 709 LRRVL 713
R+ L
Sbjct: 434 DRKAL 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 14/130 (10%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG- 650
R GD+ G + Q R D++ LGG + EIE A E++ AA V A
Sbjct: 409 RTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIE----HALEALPGVAAAQVVGATR 464
Query: 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTAS---N 706
G V V FV+ G + L A + L FKV + V+VV FP T S
Sbjct: 465 DGKTVPVAFVIPTDGASPDEAGLM----AACREALAG-FKVPARVQVVEAFPVTESANGA 519
Query: 707 KLLRRVLRDQ 716
K+ + LR+
Sbjct: 520 KIQKHRLREM 529
|
Length = 540 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 81/403 (20%), Positives = 126/403 (31%), Gaps = 101/403 (25%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGD---VYCWPTNLGWVMGP 412
D V I ++SGTTG PK T ++ TA A D + P L V G
Sbjct: 84 DDVAVIPYTSGTTGLPKGCMHTH-RTVLATAAASAAWSGLTPDSVLLAFLP--LFHVAG- 139
Query: 413 VILFSSFLNGATLALYQGSPL-------ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 465
+Y G+ L + + ++ VT + ++V
Sbjct: 140 ------MQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRF 193
Query: 466 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ-----GSLLQ 520
D + ++ GG L A + LL
Sbjct: 194 ADYDLSSLKVVG--------------------------GGGAALPPAVAERLKALTGLLY 227
Query: 521 PQAFGAFSTA---TMTAGL-VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE- 575
+ +G T G+P V + + L E
Sbjct: 228 EEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVIDP--------ETGEELPPGEEG 279
Query: 576 EVYFRGMPMYKGM---------CLR--------RHGDIIKRTVGGYIIVQGRADDTMNLG 618
E+ RG ++KG R GD+ GY R +N+
Sbjct: 280 EIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVS 339
Query: 619 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK---KGFTSQPD---- 671
G K E+E + Q ++LE I G EV+ FVVLK +G ++ D
Sbjct: 340 GYKVWPAEVEALLYQ-HPAVLEVCVIGRPDPRRG-EVVKAFVVLKPDYRGKVTEEDIIEW 397
Query: 672 -KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 713
+ +M K +++ V E P+TAS K+L R+L
Sbjct: 398 CRERMAAYKY----------PRIIEFVDELPKTASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
T++EL ++V +A AL GD + I M V LA + G + V +
Sbjct: 43 TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + A + T+ + P+ + V PL + V+ A G +
Sbjct: 103 PPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVA-----GGSSDDS 151
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK 372
L ++D L+ +PV P D+ I+++SGTTG PK
Sbjct: 152 VLGYEDLLAEAGPAH-----APVDIPNDSPALIMYTSGTTGRPK 190
|
Length = 542 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 34/173 (19%)
Query: 210 MTYKELREQVMLVANALDTMF-----SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264
+TY EL + +N L +GD +AI + +Y A +G I
Sbjct: 12 VTYGELEAR----SNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPIN 67
Query: 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 324
A EIA + S AK + +++ P +L + V
Sbjct: 68 WHLTAAEIAYIVDDSGAKVLIVS------AALADTAAELAAELPAGVPLLLVVAGPVP-- 119
Query: 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV---NILFSSGTTGEPKAI 374
++ + ++ P P+ ++L+SSGTTG PK I
Sbjct: 120 ------GFRSYEEALAAQPDT--------PIADETAGADMLYSSGTTGRPKGI 158
|
Length = 502 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 64/267 (23%), Positives = 98/267 (36%), Gaps = 46/267 (17%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVV--VSIADS 266
+TY E + V +A AL D G + I ++ ++ LA + AG VS A S
Sbjct: 81 VTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYS 140
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA----IVLPAIG 318
+ + A +L+ + K + +F Q +++ L A L V
Sbjct: 141 LMSHDHA-KLKHLFDLVKPRVVFAQSG--------APFARALAALDLLDVTVVHVTGPGE 191
Query: 319 NDVGIPLREQDLSWKDFLSSVDY-HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 377
I DL+ ++V D V LF+SG+TG PKA+ T
Sbjct: 192 GIASIAFA--DLAATPPTAAVAAAIAAITP--------DTVAKYLFTSGSTGMPKAVINT 241
Query: 378 Q--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW-----VMGPVILFSSFL-NGATLALYQ 429
Q + + E P +L W MG F+ L G TL +
Sbjct: 242 QRMMCANIAMQEQ-LRPREPDPPP---PVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDD 297
Query: 430 GSPLERSFGKFVQ---DAGVTVLGTVP 453
G PL F + ++ + TV G VP
Sbjct: 298 GKPLPGMFEETIRNLREISPTVYGNVP 324
|
Length = 624 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 19/177 (10%)
Query: 203 DESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVV 260
D S ++Y EL+ V +A L + +GD + + +P +V +I+LA++ G +V
Sbjct: 60 DSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIV 119
Query: 261 VSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320
++ S + EI R+ FT P + L + I +P +
Sbjct: 120 TTMNPSSSLGEIKKRVVDCSVGLAFTS----------PENVEKLSPLGVPVIGVPENYDF 169
Query: 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 377
+ D+ P+P + D V I++SSGTTG K + T
Sbjct: 170 DSKRIEFPKFYEL-IKEDFDFVPKP----VIKQ--DDVAAIMYSSGTTGASKGVVLT 219
|
Length = 560 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651
R GDI GY+ + R + + G + + ++E V E I++ A +V
Sbjct: 433 RTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPE-IIDAAVTAVPDKEC 491
Query: 652 GPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLR 710
G E+ V FVV ++G T SQ + + ++ P KV V V P++ + K+LR
Sbjct: 492 G-EIPVAFVVRRQGSTLSQEAVINYV-----AKQVAPYKKVRKVVFVQSIPKSPAGKILR 545
Query: 711 RVLRDQIKHELSVRSRI 727
R L+ + SV SR+
Sbjct: 546 RELKRSLT--NSVSSRL 560
|
Length = 560 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 46/137 (33%), Positives = 60/137 (43%), Gaps = 35/137 (25%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-ETAAISVSPAG-- 650
GD GY QGR DD IKTS ERV ES L E A V+ AG
Sbjct: 437 GDSAYMDEDGYFWFQGRVDDV-----IKTSG---ERVGPFEVESKLMEHPA--VAEAGVI 486
Query: 651 GGP-----EVLVIFVVLKKGFTSQP-DKLKMIFSKAIQSKLNPL-------FKVSLVKVV 697
G P E++ FV L+ G+ +P ++LK ++ L FK L
Sbjct: 487 GKPDPVRGEIIKAFVALRPGY--EPSEELKEEIRGFVKKGLGAHAAPREIEFKDKL---- 540
Query: 698 PEFPRTASNKLLRRVLR 714
P+T S K++RRVL+
Sbjct: 541 ---PKTRSGKIMRRVLK 554
|
Length = 570 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
G + V GR D+ + GG +E+E+ + + E A I V G + L FVVL
Sbjct: 430 GRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPD-VAEAAVIGVDDEQYG-QRLAAFVVL 487
Query: 663 KKGFTSQPDKLKMIFSKAIQSKLNPLFKVSL-VKVVPEFPRTASNKLLRRVLRD 715
K G ++ P+ LK + + +KV + V+ E PR A+ K+LRR L+
Sbjct: 488 KPGASATPETLKQHVRDNLAN-----YKVPRDIVVLDELPRGATGKILRRELQA 536
|
Length = 537 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628
GD++ GYI V GR D +N GG K ++ EIE
Sbjct: 414 GDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIE 448
|
Length = 536 |
| >gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 694 VKVVPEFPRTASNKLLRRVLRDQIKHE 720
V+ V E P+T S K+LRR+LR E
Sbjct: 7 VEFVDELPKTRSGKILRRLLRAIALGE 33
|
This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 130/550 (23%), Positives = 196/550 (35%), Gaps = 104/550 (18%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVIIYL 251
+A+VW D Y EL Q +A+ L D +AI + + ++ L
Sbjct: 1148 IALVWDGGSLD--------YAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 311
AI+ AG V + + A +A L S + + TQ S +L
Sbjct: 1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQ-------------SHLLER----- 1241
Query: 312 IVLPAIGNDVGIPLREQDL-SWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGE 370
LP I L L SW + H D + ++++SG+TG+
Sbjct: 1242 --LPQAEGVSAIALDSLHLDSWPSQAPGLHLHG------------DNLAYVIYTSGSTGQ 1287
Query: 371 PKAIPWTQLSSIRCTAE--GW--AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLA 426
PK + T AE W A L DV + + + F + G L
Sbjct: 1288 PKGVGNTH----AALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLV 1343
Query: 427 LYQGSPLE----RSFGKFVQDAGVTVLGTVPSLVKAW----RNTNCLEGLDWTKIRSFAS 478
L P E + + VQ GVT L VP L++ + C T +R S
Sbjct: 1344 L--AGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLAAAC------TSLRRLFS 1395
Query: 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY------IQGSLLQPQAF-GAFSTAT 531
GE L + N +++ +L + Y I + Q QA G S
Sbjct: 1396 GGEA--------LPA-ELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIG 1446
Query: 532 MTAGLV---ILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM- 584
G V +LD P C+G GL YLG L A+ F P+
Sbjct: 1447 RPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPA--LTAER----FVPDPLG 1500
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE-RVCDQADESILETAA 643
G L R GD + G + GR D + L G + EI+ R+ Q + AA
Sbjct: 1501 EDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPG---VAQAA 1557
Query: 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT 703
+ V G + LV + + G ++ ++LK + + + P + L + P
Sbjct: 1558 VLVREGAAGAQ-LVGYYTGEAGQEAEAERLKAALAAELPEYMVPAQLIRL----DQMPLG 1612
Query: 704 ASNKLLRRVL 713
S KL RR L
Sbjct: 1613 PSGKLDRRAL 1622
|
Length = 4334 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653
GD+ K GY+ + GR D + GG E+E D+ ++E+A I V G
Sbjct: 382 GDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPG-VVESAVIGVPHPDFG- 439
Query: 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRV 712
E + VV K G + D+ ++ A++ +L FK V V E PR K+ + +
Sbjct: 440 EGVTAVVVPKPG--AALDEAAIL--AALKGRLAR-FKQPKRVFFVDELPRNTMGKVQKNL 494
Query: 713 LRDQIK 718
LR+Q
Sbjct: 495 LREQYA 500
|
Length = 504 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+ ++ +Q +A AL ++ GD IAI +I LAI +AG+V V + + A
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV---LPAIGNDVGIPLR 326
I L S AK +F K+ +KA V LP I L+
Sbjct: 68 ETIRYVLEHSDAKALFV--------------GKLDDWDAMKAGVPEGLPTIILFPYSTLK 113
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK 372
+ W D L++ P P+ P + + I+++SGTTG+PK
Sbjct: 114 DHY-KWDDLLAA----TEPLQGRPLPEP-EDLATIVYTSGTTGQPK 153
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 30/191 (15%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYL 251
VA+V + R +TY EL E+ +A+ L GD + I + V L
Sbjct: 20 VALVCGDRR--------LTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAML 71
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF-PLYSKVLGAAP-L 309
A V V++ + E+ L S A + + R+F P ++VL P L
Sbjct: 72 GAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYE-------REFAPRVAEVLPRLPKL 124
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP--VYNPVDAVVNILFSSGT 367
+ +V + + G L + ++D L++ SP +Y +L++ GT
Sbjct: 125 RTLV--VVEDGSGNDLLPGAVDYEDALAAGSPERDFGERSPDDLY--------LLYTGGT 174
Query: 368 TGEPKAIPWTQ 378
TG PK + W Q
Sbjct: 175 TGMPKGVMWRQ 185
|
Length = 533 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
G++ V R D + GG EIE V + + E + V G +V V FVV
Sbjct: 374 GFLYVLDRRSDLIISGGENIYPAEIEEVL-LSHPGVAEAGVVGVPDDKWG-QVPVAFVVK 431
Query: 663 KKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIK 718
T ++L+ + + +KV V E PR AS KLLR L+ ++
Sbjct: 432 SGEVTE--EELRHFCEEKLAK-----YKVPKRFYFVEELPRNASGKLLRHELKQLVE 481
|
Length = 483 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651
+ GDI GY+ + R D + + G E+E V A +L+ AAI V
Sbjct: 436 KTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVL-AALPGVLQCAAIGVPDEKS 494
Query: 652 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLR 710
G E + +FVV+K G T +++ M +A + +KV V+ E P T K+LR
Sbjct: 495 G-EAIKVFVVVKPGETLTKEQV-MEHMRANLTG----YKVPKAVEFRDELPTTNVGKILR 548
Query: 711 RVLRDQ 716
R LRD+
Sbjct: 549 RELRDE 554
|
Length = 562 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 31/192 (16%)
Query: 202 CDESAVNLMTYKELREQVMLVANALDTMFSK--GDAIAIDMPMTVRAVIIYLAIILAGYV 259
C + + ++Y ++R+ V+ AL T SK I I MP + A I Y A +L+G +
Sbjct: 38 CWDEQLGKLSYNQVRKAVI----ALATKVSKYPDQHIGIMMPASAGAYIAYFATLLSGKI 93
Query: 260 VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPA 316
V I S RE+ + + T +++ + G P I +
Sbjct: 94 PVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLA------QTHGEDAEYPFSLIYMEE 147
Query: 317 IGNDVGIPLREQDLSWKD-----FLSSVDYHPRPNYY-SPVYNPVDAVVNILFSSGTTGE 370
+ ++LS+ + S+ + ++ +P D V ILF+SGT
Sbjct: 148 V---------RKELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAV-ILFTSGTEKL 197
Query: 371 PKAIPWTQLSSI 382
PK +P T + +
Sbjct: 198 PKGVPLTHANLL 209
|
Length = 539 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS-PAGGGPEVLVIFVV 661
G++ ++ R+ D + GG SSVE+E V + + +LETA +++ P G E FVV
Sbjct: 434 GHVEIKDRSKDIIISGGENISSVEVENVLYKYPK-VLETAVVAMPHPTWG--ETPCAFVV 490
Query: 662 LKKGFTSQPDKLKMIFS------KAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715
L+KG T++ D++ + + + + L V + E P+ + K+L+ LRD
Sbjct: 491 LEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKLRD 550
Query: 716 QIK 718
K
Sbjct: 551 IAK 553
|
Length = 579 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 7e-04
Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244
T I E V +Y EL E++ AN ++ KGD +A+ +
Sbjct: 18 DVYGHKTALIF--ESS--GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCP 73
Query: 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL 304
+ + + G ++V I E A L+ S+A + T P+Y ++
Sbjct: 74 EFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFY------PMYRQIQ 127
Query: 305 --GAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
A PL+ I L + D F P Y+P + D IL
Sbjct: 128 QEDATPLRHICLTRVALP-------ADDGVSSFTQLKAQQPATLCYAPPLS-TDDTAEIL 179
Query: 363 FSSGTTGEPKAI 374
F+SGTT PK +
Sbjct: 180 FTSGTTSRPKGV 191
|
Length = 517 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 8e-04
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 211 TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL + +A AL GD +A+ P + V++YLAI AG V V + S+ A
Sbjct: 13 TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72
Query: 270 REIA 273
E+A
Sbjct: 73 AELA 76
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 36/131 (27%), Positives = 48/131 (36%), Gaps = 25/131 (19%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS---VSPA- 649
GD+ GY+ V GR DD + GG EIE V +L+ A+ V
Sbjct: 293 GDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEAV-------LLQHPAVEEAAVVGVP 345
Query: 650 ----GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTA 704
G + V FVV + + KL +K +PE PR A
Sbjct: 346 DDEWG---QRPVAFVV-----PNDDPVSVEELQAFLADKLAK-YKRPKRWYPLPELPRNA 396
Query: 705 SNKLLRRVLRD 715
S K+ R LR
Sbjct: 397 SGKIDRAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 20/169 (11%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY E+ A AL ++ KG + + +P I+ L I+ AG V +
Sbjct: 57 TYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALE 116
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
EI + + AK I T D Y KV G L IVL E
Sbjct: 117 SEIKKQAEAAGAKLIVTNDT---------NYGKVKGLG-LPVIVLGEEKI-------EGA 159
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ 378
++WK+ L + D + + + + FSSGTTG K + T
Sbjct: 160 VNWKELLEAADRAGDTSDNEEILQ--TDLCALPFSSGTTGISKGVMLTH 206
|
Length = 546 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAG--YVVVSIADS 266
+TY E E+V +A AL S + I ++ ++ LA + AG Y VS A S
Sbjct: 70 LTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYS 129
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 322
+++ +LR + +F D +++ L A + + A+ V
Sbjct: 130 LVSQDFG-KLRHVLELLTPGLVFADDG--------AAFARALAAVVPADVEVVAVRGAVP 180
Query: 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV--DAVVNILFSSGTTGEPKAIPWTQ 378
+ L++ P + V D + LF+SG+TG PKA+ T
Sbjct: 181 GR---AATPFAALLAT----PPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTH 231
|
Length = 614 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 64/270 (23%), Positives = 105/270 (38%), Gaps = 45/270 (16%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAG--YVVVSIADS 266
+TY E QV +A AL + S + I ++ ++ LA + AG VS A S
Sbjct: 26 VTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYS 85
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 322
+++ A +LR + +F +D +++ L A L + + A+ G
Sbjct: 86 LLSKDFA-KLRHIFDLLTPGAVFAEDG--------AAFARALAALGLAGVPVVAVRGAPG 136
Query: 323 IP--LREQDLSWKDFLSSVDYHPRPNYYSPVYNPV--DAVVNILFSSGTTGEPKAIPWTQ 378
P L+ P + V D V LF+SG+TG PKA+ T
Sbjct: 137 GPAIAFAALLA----------TPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTH 186
Query: 379 L---SSIRCTAEGWAHIDLKVGDVYCWPTNLGW--VMGPVILFSSFL-NGATLALYQGSP 432
++ A+ W + + + W L W G F+ L NG TL + G P
Sbjct: 187 RMLCANQAMIAQCWPFLTEEPPVLVDW---LPWNHTFGGNHNFNMVLYNGGTLYIDDGKP 243
Query: 433 LERSFGKFVQ---DAGVTVLGTVPSLVKAW 459
+ F + ++ + TV VP K +
Sbjct: 244 VPGLFEETLRNLREVSPTVYFNVP---KGF 270
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL E+V +A L + GD +A+ + + + A+ G V V I +
Sbjct: 5 TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64
Query: 270 REIATRLRVSKAKGIFT 286
E+A L S A+ I
Sbjct: 65 EELAHILDHSGARLIVV 81
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.002
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVII 249
+ VA+V+ + +TY+EL E+ +A+ L GD +AI + + V+
Sbjct: 2 DAVAVVFGDQS--------LTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVA 53
Query: 250 YLAIILAG--YVVVSIADSFAAREIATRLRVSKAKGIFTQ 287
LA++ AG YV + A A R +A L S AK + T
Sbjct: 54 ILAVLKAGAAYVPLDPAYP-AER-LAYMLEDSGAKLLLTD 91
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 65/303 (21%), Positives = 107/303 (35%), Gaps = 69/303 (22%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLS--SIRCTAEGWA-HIDLKVGDVY-CW-PTNLGWVM 410
D + ++++SGTTG PK + L+ ++ A I L GD + P L V
Sbjct: 88 DDLATLIYTSGTTGNPKGV---MLTHRNLLAQAAALLEVIPLSPGDRVLSFLP--LAHVF 142
Query: 411 GPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 469
+ + +GA + + SP + + +++ TV VP +
Sbjct: 143 EQRLGEYLPLSSGARVN-FAESP--ETLLEDLREVRPTVFFAVPRV-------------- 185
Query: 470 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 529
W KI + + V L K + A+ GG L A G+ L P+ F
Sbjct: 186 WEKIYAGIE----AKVAAAGPLKRKLFRWAL----GGGRLRFAVSGGAPLPPEVLEFFR- 236
Query: 530 ATMTAGLVILD-----ECGVPY---PDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG 581
G+ IL+ E +G VG G R+ A+ E+ RG
Sbjct: 237 ---ALGIPILEGYGLTETSGVATVNRPGDIRIGTVG--KPLPGVEVRI--AEDGEILVRG 289
Query: 582 MPMYKGMCLR---------------RHGDIIKRTVGGYIIVQGRADDTM-NLGGIKTSSV 625
+ KG + GDI + G++++ R D + GG +
Sbjct: 290 PNVMKGY-YKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQ 348
Query: 626 EIE 628
IE
Sbjct: 349 PIE 351
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653
GD ++R G++ GR D+ + G + S E+E V A + E A V G
Sbjct: 401 GDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVA-YATGLVAEAVAFGVPDPTLG- 458
Query: 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRV 712
+ +V+ V G L +++L P + V +L+ V PR A+ K+ R+
Sbjct: 459 QAIVLVVTPPGGEELDRAALL----AECRARL-PNYMVPALIHVRQALPRNANGKIDRKA 513
Query: 713 L 713
L
Sbjct: 514 L 514
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E V +A L + KGD +A+ M + + VI Y AI+ AG VVV +
Sbjct: 2 ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61
Query: 269 AREIATRLRVSKAKGIFTQD 288
E+ L S A+ +
Sbjct: 62 EAELEHILNDSGARVLIVGS 81
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 47/190 (24%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
+ + + A + ++ +TY +L+E +A +D++ I + M+
Sbjct: 13 QTQPDFPAYDYLGEK--------LTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPE 64
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS---K 302
+ +L + AG+ + + S A I + V+K I + + PL
Sbjct: 65 MLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATE-------ELPLEILGIP 117
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
V+ LK I D ++ D NYY I+
Sbjct: 118 VITLDELKDIFATGNPYDFDHAVKGDD----------------NYY------------II 149
Query: 363 FSSGTTGEPK 372
F+SGTTG+PK
Sbjct: 150 FTSGTTGKPK 159
|
Length = 503 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653
GD+ GY+ + R+ D + GG SS+++E + + E A I V
Sbjct: 415 GDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLA-VGHPKVAEAAVIGVYHPKWDE 473
Query: 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 713
L+I V LK G T+ ++ K + K+ + V V P TA+ K+L+ L
Sbjct: 474 RPLLI-VQLKPGETATREE----ILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTAL 528
Query: 714 RDQIK 718
R+Q K
Sbjct: 529 REQFK 533
|
Length = 542 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653
GD+ + GYI ++ R+ D + GG SS+E+E V ++LE A++ P
Sbjct: 435 GDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVV-YTHPAVLE-ASVVARPDERWG 492
Query: 654 EVLVIFVVLKKGF-TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRV 712
E FV LK G S L K + +L P + V V P+TA+ K+ + V
Sbjct: 493 ESPCAFVTLKPGVDKSDEAALAEDIMKFCRERL-PAYWVPKSVVFGPLPKTATGKIQKHV 551
Query: 713 LRDQIK 718
LR + K
Sbjct: 552 LRAKAK 557
|
Length = 567 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.004
Identities = 132/645 (20%), Positives = 229/645 (35%), Gaps = 123/645 (19%)
Query: 111 GRAYKDPITSFRLFQKFT------VEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHG 164
R + D T RL + T E P+ L E+ +L++ ++ +
Sbjct: 4491 DRGHFDAATIERLARHLTNLLEAMAEDPQ----RRLGELQ---------LLEKAEQQRIV 4537
Query: 165 GTWLPGSVLNIAECCL--LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLV 222
W A C+ L + R + VA+V+ E++ +TY EL + +
Sbjct: 4538 ALWNRTDAGYPATRCVHQLVAERARMTPDAVAVVFDEEK--------LTYAELNRRANRL 4589
Query: 223 ANALDTMFSKGDA-IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKA 281
A+AL + + I M + ++ LA++ AG V + + +A + S A
Sbjct: 4590 AHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGA 4649
Query: 282 KGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341
+ TQ +L+ P+ L ++ L ++D W+ F
Sbjct: 4650 ALLLTQSHLLQR---LPI------PDGLASLAL------------DRDEDWEGF------ 4682
Query: 342 HPRPNYYSPVYNPV-----DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV 396
P ++P D + ++++SG+TG PK + + S + +L
Sbjct: 4683 --------PAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTP 4734
Query: 397 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSL 455
D + + L+ +NGA++ + + + VTVL P
Sbjct: 4735 DDRVLQFMSFSFDGSHEGLYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVY 4794
Query: 456 VKAWRNTNCLEGLDWTKIRSFASTGETSNVD--DDLWLSSKAWYNAIIESCGGTELSSAY 513
++ +G + +R + GE D W + K Y + G TE
Sbjct: 4795 LQQLAEHAERDG-EPPSLRVYCFGGEAVAQASYDLAWRALKPVY--LFNGYGPTE---TT 4848
Query: 514 IQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPDDQPCVGEVGLFPLYLGAS 566
+ L + + A A M G +LD P P VG G LYLG
Sbjct: 4849 VTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLNPLP-----VGVAG--ELYLGG- 4900
Query: 567 DRLLNADHEE-----VYFRGMPMYK-GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI 620
+ + E F P G L R GD+ + G I GR D + + G
Sbjct: 4901 EGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGF 4960
Query: 621 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA 680
+ EIE + ++ E I+ A G + LV +VV P + +
Sbjct: 4961 RIELGEIE-ARLREHPAVREAVVIAQEGAVG--KQLVGYVV--------PQDPALADADE 5009
Query: 681 IQSKLNPLFKVSLVKVVPEF------------PRTASNKLLRRVL 713
Q++L K +L + +PE+ P T + KL R+ L
Sbjct: 5010 AQAELRDELKAALRERLPEYMVPAHLVFLARMPLTPNGKLDRKAL 5054
|
Length = 5163 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 221 LVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280
L A+ + +K D +++ P T ++ A+ +AG V+ I A IA LR +K
Sbjct: 52 LAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAK 111
Query: 281 AKGIFTQDFILRGGRKF-PLYSKVLGAAPLKAIVLPAIGNDVGIP---LREQDLSWKDFL 336
K +F R F PL +VL +L + +++ +P + E D +
Sbjct: 112 PKILFVD-------RSFEPLAREVLH-------LLSSEDSNLNLPVIFIHEIDFPKRPSS 157
Query: 337 SSVDY-------HPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
+DY P P+ + ++ D +++ ++SGTT +PK + + + T
Sbjct: 158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLS 217
Query: 388 ---GWAHIDLKVGDVYCW 402
GW ++ VY W
Sbjct: 218 AIIGW---EMGTCPVYLW 232
|
Length = 579 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 12/168 (7%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++ EL ++ A L + GD +A+ M A + G V + F
Sbjct: 12 RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFK 71
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRK-FPLYSKVLGAAPLKAIVLPAIG-NDVGIPLR 326
EIA L S A+ + +L G P VL + P + A + +
Sbjct: 72 PEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVL-SVPTPPEIAAAYRISPALLTPP 130
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI 374
+ W+ +L+ + Y P PV +++++SGTTG PK +
Sbjct: 131 AGAIDWEGWLAQ-----QEPYDGP---PVPQPQSMIYTSGTTGHPKGV 170
|
Length = 509 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 727 | |||
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.97 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.96 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.93 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.92 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.86 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.74 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.58 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.37 | |
| PF13745 | 91 | HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A. | 99.05 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.91 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.38 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.82 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.67 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.62 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.51 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 90.7 |
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-102 Score=898.31 Aligned_cols=722 Identities=63% Similarity=1.067 Sum_probs=618.4
Q ss_pred CCCcccccChhHHHHcCCCchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCC
Q 004860 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIK 80 (727)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~ 80 (727)
|||.+++|+++||.++|+..+++++|.+.|+++..+.+ -+-..++-.. ..+.|+|..+.++||+|++.++-++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (728)
T PLN03052 4 AGKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRAG-ASPPSIWRRI-SQSLLTPSHPFALHQLMYYSCYKNWDSDTL 81 (728)
T ss_pred ccCChhhcCHHHHHHcCCChHHHHHHHHHHHHHHHhhc-CCchHHHHHH-HHHhcCCCCCccHHHHhhhhcccCCCcccc
Confidence 79999999999999999999999999999999996644 2556677777 789999999999999999999999998887
Q ss_pred CCCccccCChhhhcccchHHHHHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCC
Q 004860 81 GPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK 160 (727)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 160 (727)
.+..+|.|.+....++++..+++..+.......|...+.+|+.|++++++++..||..+++.+.+.|++++.++++..+.
T Consensus 82 ~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~~ 161 (728)
T PLN03052 82 GPPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDE 161 (728)
T ss_pred CCCCCCCCChhhcccchHHHHHHHhhhhhhHHhhCCChhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCCceeecCCCC
Confidence 78889999998888899998888865444334477777899999999999999999999999988999999999875333
Q ss_pred CCCCCCcCCCCcccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEE
Q 004860 161 SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239 (727)
Q Consensus 161 ~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~ 239 (727)
..+..+||.++..|++++|++++. +++||++|+++.+++...+..+++||+||+++++++|+.|+++ +++||+|+++
T Consensus 162 ~~~~~~wf~g~~ln~~~~~l~~~~--~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~ 239 (728)
T PLN03052 162 SNPGGQWLPGAVLNVAECCLTPKP--SKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAID 239 (728)
T ss_pred CCCCCEECCCCEeEHHHHHHHHHh--ccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 446679999999999999998765 4689999999987532233457899999999999999999999 9999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCC
Q 004860 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN 319 (727)
Q Consensus 240 ~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 319 (727)
++|++++++++|||+++|++++|++|+++++++.+++++++++++|+++...++++.++....+.+.....++++.....
T Consensus 240 ~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~ 319 (728)
T PLN03052 240 MPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGK 319 (728)
T ss_pred eCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999998888888888877777666556666654322
Q ss_pred CCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCE
Q 004860 320 DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV 399 (727)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~ 399 (727)
...........+|++++.................++++++||+|||||||+||||+++|++++..+......++++++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~ 399 (728)
T PLN03052 320 SVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDI 399 (728)
T ss_pred ccccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcE
Confidence 11111122356788876543210001112222345699999999999999999999999998887766666788999999
Q ss_pred EEEecccccccchHHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEee
Q 004860 400 YCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (727)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~g 479 (727)
++++++++|+++.+.++++|++|++++++++.+++..+++++++++||++.++|++++.|.+.......++++||.+++|
T Consensus 400 ~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~ 479 (728)
T PLN03052 400 VCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGST 479 (728)
T ss_pred EEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEec
Confidence 99999999999998889999999999999987777889999999999999999999999988755566789999999999
Q ss_pred cCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe
Q 004860 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (727)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~ 559 (727)
||+++++...|+...++..+++|.||+||++++++...+..+...+++|+|++|++++|+|++|+++|.|++++|||++.
T Consensus 480 Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~ 559 (728)
T PLN03052 480 GEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALF 559 (728)
T ss_pred CCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEe
Confidence 99999998888877665567999999999987665554444556678999999999999999999999997657999998
Q ss_pred cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCce
Q 004860 560 PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 639 (727)
Q Consensus 560 ~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~ 639 (727)
+.+++....+++++.++.||..+|..+|++||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|+..||+|.
T Consensus 560 ~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~ 639 (728)
T PLN03052 560 PLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVL 639 (728)
T ss_pred CCCCCCCccccCchhhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcc
Confidence 88777766677777778899888888888999999999999999999999999999999999999999999854799999
Q ss_pred eeEEEeecCCCCCceEEEEEEEec--CCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHH
Q 004860 640 ETAAISVSPAGGGPEVLVIFVVLK--KGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI 717 (727)
Q Consensus 640 ~a~vv~~~~~~~~~~~l~a~vv~~--~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~ 717 (727)
+++|++++++..|++++++||+++ ++...+.++|+++|+++|+++|+++++|+.|+++++||+|+||||+|+.|++++
T Consensus 640 eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~ 719 (728)
T PLN03052 640 ETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQL 719 (728)
T ss_pred eEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHH
Confidence 999999998866558999999998 566667789999999999999999999999999999999999999999999998
Q ss_pred hhhhcccCCC
Q 004860 718 KHELSVRSRI 727 (727)
Q Consensus 718 ~~~~~~~~~~ 727 (727)
.+... +|+|
T Consensus 720 ~~~~~-~~~~ 728 (728)
T PLN03052 720 AQELS-RSKL 728 (728)
T ss_pred Hhhhh-ccCC
Confidence 77765 7765
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-86 Score=715.24 Aligned_cols=515 Identities=27% Similarity=0.421 Sum_probs=446.6
Q ss_pred CcCCCCcccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCC
Q 004860 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMT 243 (727)
Q Consensus 166 ~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~Vai~~~~s 243 (727)
+||.++..|.+++|++++... ..+|++|+++.++.+ +. +++||+||.+.++++|+.|++. + +||||+|++|+.
T Consensus 1 ~wf~~~~lN~~~n~~dr~~~~-~~~~~~aii~~~e~~--~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~ 75 (528)
T COG0365 1 KWFEGGTLNLALNALDRHLEA-DRPDDTAIIFDGEDG--LF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNS 75 (528)
T ss_pred CCcCCceeechhhhhhhhhhc-cCCCceEEEEEcCCC--Cc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCC
Confidence 599999999999999997632 348999999987621 22 7999999999999999999975 7 999999999999
Q ss_pred HHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCC
Q 004860 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 323 (727)
Q Consensus 244 ~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 323 (727)
++.+++||||+|+||+++|+.+.++++.+++++++++++++|+.++..++++..+....+.+.... ++++....
T Consensus 76 pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~-~iv~~r~~----- 149 (528)
T COG0365 76 PEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS-VVVVPRLG----- 149 (528)
T ss_pred HHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc-eEEecccc-----
Confidence 999999999999999999999999999999999999999999999999999998888777766655 44443322
Q ss_pred CCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHH-hhchhcCCCCCCEEEE
Q 004860 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCW 402 (727)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~ 402 (727)
.+|.+.....+. ..+.....++|+++|+|||||||+||||+|+|++++.... .....+.+.++|++++
T Consensus 150 ------~~~~~~~~~~~~-----~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~ 218 (528)
T COG0365 150 ------LWYDEAVEKASE-----KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWN 218 (528)
T ss_pred ------ccHHHHhhccCC-----CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEe
Confidence 677777765443 2333447889999999999999999999999998655444 4445788889999999
Q ss_pred ecccccccchHH-hHHhhhcCcEEEEecCCCC--hhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEee
Q 004860 403 PTNLGWVMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (727)
Q Consensus 403 ~~~~~~~~~~~~-~~~~l~~G~~lv~~~~~~~--~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~g 479 (727)
.++++|.++.+. +|++|++|++++++++.++ +..++++|+++++|++++.|+.+++|.+.......++++||.+.++
T Consensus 219 ~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~Sa 298 (528)
T COG0365 219 SSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSA 298 (528)
T ss_pred CCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeecc
Confidence 999999999965 8999999999999988765 7899999999999999999999999999876677899999999999
Q ss_pred cCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe
Q 004860 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (727)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~ 559 (727)
||+|+++.++|+.+.++ ++|.+.||+||++.++....+ +...++.|+|+||+++.|+|++|+++|+|+ |+|++.
T Consensus 299 GEPLnpe~~~w~~~~~g-~~i~d~~gqTEtg~~~~~~~~--~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~---G~Lvi~ 372 (528)
T COG0365 299 GEPLNPEAFEWFYSALG-VWILDIYGQTETGMGFIAGRP--PVKNGSSGLPLPGYAVRRVDDEGNPVPPGV---GELVVR 372 (528)
T ss_pred CCCCCHHHHHHHHHHhC-CCEeccccccccCccccCCCC--CcCCCCCCCCCCCceeEEECCCCCcCCCCc---eEEEEe
Confidence 99999999999998874 999999999999976666555 445555699999999999999999999997 899995
Q ss_pred cccCCCCcccccc-ccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCc
Q 004860 560 PLYLGASDRLLNA-DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638 (727)
Q Consensus 560 ~~y~~~~~~~~~~-~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V 638 (727)
....+....++++ +.+.+.|. +. ||.|||.+++|+||+++|+||.||+||+.|+||.+.|||++|. +||.|
T Consensus 373 ~~~p~~~~~~w~d~er~~~~y~------~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~-~hP~V 444 (528)
T COG0365 373 LPWPGMALTYWNDPERYKEAYF------GR-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLL-AHPAV 444 (528)
T ss_pred CCCchhhhhhhCCHHHHHHHHh------hc-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHH-hCcce
Confidence 3332333333333 23322222 11 8999999999999999999999999999999999999999997 99999
Q ss_pred eeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHh
Q 004860 639 LETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 718 (727)
Q Consensus 639 ~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 718 (727)
.||+||+.+|+..| +.++|||++++|..++ +|.+.|++++++.+.++++|+.|+++++||+|.||||.|+.|++.+.
T Consensus 445 aEaAvVg~pd~~kg-~~v~afVvL~~g~~~~--~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~ 521 (528)
T COG0365 445 AEAAVVGVPDPGKG-QIVLAFVVLAAGVEPN--ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILH 521 (528)
T ss_pred eeeEEEeccCCCCC-cEEEEEEEecCCCChH--HHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHHh
Confidence 99999999999999 8999999999998777 99999999999999999999999999999999999999999999987
Q ss_pred h
Q 004860 719 H 719 (727)
Q Consensus 719 ~ 719 (727)
+
T Consensus 522 ~ 522 (528)
T COG0365 522 K 522 (528)
T ss_pred h
Confidence 4
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-87 Score=883.62 Aligned_cols=650 Identities=19% Similarity=0.199 Sum_probs=531.7
Q ss_pred HHHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCC-----Ccc
Q 004860 12 DLMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-----PLY 85 (727)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~-----~~~ 85 (727)
|++-+++......+|.+.++++.++ +++++||++||++ |++.|+++|..+.+|+ ||+||++++..... ...
T Consensus 1405 NtlplR~~~~~~~t~~~~l~~v~~~~~~a~~hq~~p~~~-i~~~l~~~r~~~~~pL--Fq~~~~~~~~~~~~~~~~~~~~ 1481 (3956)
T PRK12467 1405 NTQVLRAEVDGQASFQQLLQQVKQAALEAQAHQDLPFEQ-LVEALQPERSLSHSPL--FQVMFNHQRDDHQAQAQLPGLS 1481 (3956)
T ss_pred eeeEEEEecCCCCCHHHHHHHHHHHHHHHHhccCCCHHH-HHHHhcccccCCCCCc--eeEEEEeecccccccccCCCce
Confidence 4556777777788888888888888 9999999999999 9999999998888888 99999998743221 111
Q ss_pred c--cCChhhhcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeee--ecCCCC
Q 004860 86 W--FPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDK 160 (727)
Q Consensus 86 ~--~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~ 160 (727)
. .......++|||++.+.+.++++...+ |++ ++|++.++++|.++|.++|+++..+++.+...+ ++..+.
T Consensus 1482 ~~~~~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~l~~~~~~~~ 1556 (3956)
T PRK12467 1482 VESLSWESQTAQFDLTLDTYESSEGLQASLTYAT-----DLFEASTIERLAGHWLNLLQGLVADPERRLGELDLLDEAER 1556 (3956)
T ss_pred eEeeecCCcccccceEEEEEecCCeEEEEEEEeC-----CcCCHHHHHHHHHHHHHHHHHHhhCccCceeeccccchHHh
Confidence 1 111234678999998888777888888 999 999999999999999999999998888877764 555544
Q ss_pred CCCCCCcCCCCcccHhhhhccC--CCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEE
Q 004860 161 SKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237 (727)
Q Consensus 161 ~~~~~~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Va 237 (727)
...+..|+.+........+++. ..+++++||++|+++.++ .+||+||+++++++|++|.++ +++|++|+
T Consensus 1557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~ 1628 (3956)
T PRK12467 1557 RQILEGWNATHTGYPLARLVHQLIEDQAAATPEAVALVFGEQ--------ELTYGELNRRANRLAHRLIALGVGPEVLVG 1628 (3956)
T ss_pred hhhHHhhcCCccCCCccccHHHHHHHHHHhCCCCeEEEeCCc--------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 4555668766544333334443 335689999999999877 999999999999999999999 99999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCC
Q 004860 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAI 317 (727)
Q Consensus 238 i~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 317 (727)
|+++||+++++++|||+|+|++|+||||.+|.+++.+++++++++++|++....... ........+++...
T Consensus 1629 l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~ 1699 (3956)
T PRK12467 1629 IAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARL---------PLPDGLRSLVLDQE 1699 (3956)
T ss_pred EEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhC---------ccccCCcEEEeccc
Confidence 999999999999999999999999999999999999999999999999987532111 00001112222110
Q ss_pred CCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCC
Q 004860 318 GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG 397 (727)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 397 (727)
.++..... ...+.....++++|||+|||||||+||||+++|+++++.+.+....++++++
T Consensus 1700 ---------------~~~~~~~~-----~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~ 1759 (3956)
T PRK12467 1700 ---------------DDWLEGYS-----DSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAA 1759 (3956)
T ss_pred ---------------cchhccCC-----CCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcc
Confidence 00001110 1112234467999999999999999999999999999999998889999999
Q ss_pred CEEEEecccccccchHHhHHhhhcCcEEEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeE
Q 004860 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS 475 (727)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~ 475 (727)
|++++++|++||++++++|.+|++|+++++.+.. .++..+++.|+++++|++.++|++++.|..... ...++++||.
T Consensus 1760 d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~ 1838 (3956)
T PRK12467 1760 DVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRR 1838 (3956)
T ss_pred cEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceE
Confidence 9999999999999999999999999999998643 467899999999999999999999999987422 2345789999
Q ss_pred EEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCC----CCccccccccCCCCceEEEECCCCCcCCCCCC
Q 004860 476 FASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQP 551 (727)
Q Consensus 476 i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~ 551 (727)
+++|||+++++..+.+.+.+++++++|.||+||+++.++..... ......++|+|++|++++|+|++++++|.|+.
T Consensus 1839 v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~ 1918 (3956)
T PRK12467 1839 VVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVA 1918 (3956)
T ss_pred EEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEECCCCCCCCCCCc
Confidence 99999999999998888887778899999999999765543321 11234689999999999999999999999996
Q ss_pred eeeeEEE-----ecccCCCCccccccccccccccccccC-CCceeeeeCceEEEecCceEEEEeecCCeeecCceeechH
Q 004860 552 CVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625 (727)
Q Consensus 552 giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~-~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~ 625 (727)
|||+| +.||+++ ++.|+++|..+|+. +|.+||||||+|+|++||+|+|+||+|||||++|+||+|+
T Consensus 1919 --GEl~i~G~~v~~GYl~~------p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~ 1990 (3956)
T PRK12467 1919 --GELYLGGVGLARGYLNR------PALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELG 1990 (3956)
T ss_pred --eEEEeccccccccccCC------hhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEechH
Confidence 99998 5677774 44788899999985 4789999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCC----hHHHHHHHHHHHHhhcCCCcccceEEEcCCCC
Q 004860 626 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFP 701 (727)
Q Consensus 626 eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~----~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP 701 (727)
|||++|. +||+|.+|+|++.+ ...+ +++++||+...+...+ .....+.+++++++.||.||+|+.|+++++||
T Consensus 1991 eIE~~l~-~~p~V~~a~vv~~~-~~~~-~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP 2067 (3956)
T PRK12467 1991 EIEARLR-EQGGVREAVVIAQD-GANG-KQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMP 2067 (3956)
T ss_pred HHHHHHH-hCCCcceEEEEEec-CCCC-cEEEEEEEecCcccccccccccccHHHHHHHHHhhCchhhCchhhhhhhcCC
Confidence 9999995 99999999999886 3344 7999999987643221 12245567788999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHh
Q 004860 702 RTASNKLLRRVLRDQIK 718 (727)
Q Consensus 702 ~t~~GKvdR~~L~~~~~ 718 (727)
+|+||||||++|++...
T Consensus 2068 ~t~~GKidr~~L~~~~~ 2084 (3956)
T PRK12467 2068 LTPNGKLDRKALPAPDA 2084 (3956)
T ss_pred CCCCCCcchhhCCCCcc
Confidence 99999999999987543
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-85 Score=868.97 Aligned_cols=638 Identities=15% Similarity=0.144 Sum_probs=519.4
Q ss_pred HHHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCC--------
Q 004860 12 DLMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-------- 82 (727)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~-------- 82 (727)
|++-+++...+..+|.++|+++.+. +++++||++||++ |++.++.. .+++ ||+|+++++.....
T Consensus 2929 ntlp~r~~~~~~~~~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~~~~~----~~~l--f~~~~~~~~~~~~~~~~~~~~~ 3001 (3956)
T PRK12467 2929 NTLPVIASPRAEQTVSDWLQQVQAQNLALREFEHTPLAD-IQRWAGQG----GEAL--FDSILVFENYPISEALKQGAPS 3001 (3956)
T ss_pred eceeEEEecCCCCCHHHHHHHHHHHHHHHHhccCCCHHH-HHHhhccC----CCCC--cceEEEeecCCchhhhhccCCC
Confidence 4677888888888898888888888 9999999999999 99998642 2455 88888887743211
Q ss_pred CccccCC-hhhhcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeee--ecCC
Q 004860 83 PLYWFPS-LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRT 158 (727)
Q Consensus 83 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~ 158 (727)
.+...+. .....+|++++.+.. ++++.+.+ |++ ++|++.++++|.++|.++|+++...++.+...+ +...
T Consensus 3002 ~~~~~~~~~~~~~~~~l~l~~~~-~~~~~~~~~y~~-----~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~l~~l~~~ 3075 (3956)
T PRK12467 3002 GLRFGAVSSREQTNYPLTLAVGL-GDTLELEFSYDR-----QHFDAAAIERLAESFDRLLQAMLNNPAARLGELPTLAAH 3075 (3956)
T ss_pred CceeecccccccccCceEEEecc-CcceeEEEEech-----hhCCHHHHHHHHHHHHHHHHHHHhCcCCchhhccCCCHH
Confidence 1111111 123467888887765 45677777 988 999999999999999999999988888776654 3333
Q ss_pred CCCCCCCCcCCCCcccHhhhhccC--CCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCE
Q 004860 159 DKSKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235 (727)
Q Consensus 159 ~~~~~~~~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~ 235 (727)
+....+..|+..........+++. ..+++++||++|+++.++ ++||+||+++++++|+.|.+. +++|++
T Consensus 3076 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~gv~~g~~ 3147 (3956)
T PRK12467 3076 ERRQVLHAWNATAAAYPSERLVHQLIEAQVARTPEAPALVFGDQ--------QLSYAELNRRANRLAHRLIAIGVGPDVL 3147 (3956)
T ss_pred HHHHHHHhhccCCCCCCccccHHHHHHHHHHhCCCcceEeeCCc--------ccCHHHHHHHHHHHHHHHHHcCCCCCCe
Confidence 333344678876554443344443 335689999999999887 999999999999999999999 999999
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEc
Q 004860 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLP 315 (727)
Q Consensus 236 Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 315 (727)
|+|+++|++++++++|||+|+|++||||||.+|.+++.+++++++++++|++....... ........+.+.
T Consensus 3148 V~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~---------~~~~~~~~~~~~ 3218 (3956)
T PRK12467 3148 VGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQL---------PAPAGDTALTLD 3218 (3956)
T ss_pred EEEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhc---------ccccCCceeeec
Confidence 99999999999999999999999999999999999999999999999999987532110 000011111111
Q ss_pred CCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCC
Q 004860 316 AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK 395 (727)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~ 395 (727)
.. .+. . .....+.....++++|||+|||||||+||||+++|+++++.+.+....++++
T Consensus 3219 ~~-------------~~~-----~----~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~ 3276 (3956)
T PRK12467 3219 RL-------------DLN-----G----YSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELD 3276 (3956)
T ss_pred ch-------------hhc-----c----cCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCC
Confidence 00 000 0 0011122345689999999999999999999999999999999998999999
Q ss_pred CCCEEEEecccccccchHHhHHhhhcCcEEEEecC-CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCcccee
Q 004860 396 VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR 474 (727)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr 474 (727)
++|++++++|++|+.+++++|.+|++|+++++.++ ..++..+++.|++++||++.++|++++.|++.. ...++++||
T Consensus 3277 ~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~~~~~~~lr 3354 (3956)
T PRK12467 3277 ANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GGADCASLD 3354 (3956)
T ss_pred cCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--cccCCCCce
Confidence 99999999999999999999999999999999873 257889999999999999999999999998653 234678999
Q ss_pred EEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCC----CccccccccCCCCceEEEECCCCCcCCCCC
Q 004860 475 SFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILDECGVPYPDDQ 550 (727)
Q Consensus 475 ~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~vld~~~~~~p~G~ 550 (727)
.+++|||+++++..+++.+.+++++++|.||+||+++.++...... .....++|+|++|++++|+|++++++|.|+
T Consensus 3355 ~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~ 3434 (3956)
T PRK12467 3355 IYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGV 3434 (3956)
T ss_pred EEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCC
Confidence 9999999999999988888777888999999999987655433211 123468999999999999999999999999
Q ss_pred CeeeeEEE-----ecccCCCCcccccccccccccccccc-CCCceeeeeCceEEEecCceEEEEeecCCeeecCceeech
Q 004860 551 PCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624 (727)
Q Consensus 551 ~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~-~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~ 624 (727)
+ |||+| +.||+++ ++.|+++|..+|+ .+|.|||||||+|+|++||+|+|+||+|+|||++|+||+|
T Consensus 3435 ~--GEL~i~G~~v~~GY~~~------~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~ 3506 (3956)
T PRK12467 3435 A--GELYIGGVGLARGYHQR------PSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIEL 3506 (3956)
T ss_pred C--ceEEEcchhhhhhccCC------cccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecH
Confidence 6 99998 5677774 4588999999998 6788999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCC
Q 004860 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA 704 (727)
Q Consensus 625 ~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 704 (727)
+|||++|. +||+|.+|+|++..+ ..+ +++++||+...+.... .+.++++++++||.||+|..|+++++||+|+
T Consensus 3507 ~EIE~~l~-~~p~V~~a~v~~~~~-~~~-~~lva~v~~~~~~~~~----~~~l~~~l~~~Lp~y~vP~~~~~l~~lP~t~ 3579 (3956)
T PRK12467 3507 GEIEARLL-QHPSVREAVVLARDG-AGG-KQLVAYVVPADPQGDW----RETLRDHLAASLPDYMVPAQLLVLAAMPLGP 3579 (3956)
T ss_pred HHHHHHHh-hCcccceEEEEEecC-CCC-cEEEEEEeCCCCCccc----HHHHHHHHhccCChhhCCCeeeeeccCCCCC
Confidence 99999995 999999999998754 345 7999999987643333 3445667889999999999999999999999
Q ss_pred CchhhHHHHHHHHh
Q 004860 705 SNKLLRRVLRDQIK 718 (727)
Q Consensus 705 ~GKvdR~~L~~~~~ 718 (727)
||||||++|++...
T Consensus 3580 ~GKidR~~L~~~~~ 3593 (3956)
T PRK12467 3580 NGKVDRKALPDPDA 3593 (3956)
T ss_pred CCccchhhcCCCCc
Confidence 99999999997653
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-81 Score=722.02 Aligned_cols=587 Identities=20% Similarity=0.263 Sum_probs=466.7
Q ss_pred CCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCCCCCCCCcCCCCcccHhhhhccCCCCCCCCCCceEEEE
Q 004860 118 ITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVW 197 (727)
Q Consensus 118 ~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~ 197 (727)
+.+|+.+++++++++..||..+.+.+ ..|++++.++++. .....+||.++..|.++++++++.....+||++|+++
T Consensus 7 ~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~---~~~~~~wf~~~~~n~~~~~l~~~~~~~~~~~~~A~~~ 82 (647)
T PTZ00237 7 PFDYENDSNYANSNPESFWDEVAKKY-VHWDKMYDKVYSG---DEIYPDWFKGGELNTCYNVLDIHVKNPLKRDQDALIY 82 (647)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhc-CeeeCCcccccCC---CCCchhhCCCCeeeHHHHHHHHhhcccCCCCceEEEE
Confidence 35678899999999999999999997 6999999999864 2234799999999999999988652223799999998
Q ss_pred ecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHH
Q 004860 198 REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRL 276 (727)
Q Consensus 198 ~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l 276 (727)
.+.. .+..+++||+||.++++++|+.|+++ |++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|
T Consensus 83 ~~~~--~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l 160 (647)
T PTZ00237 83 ECPY--LKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRI 160 (647)
T ss_pred EcCC--CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHH
Confidence 6431 12246899999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEEeecccccCCccccchHHHhhhC------CCcEEEEcCCCC--CC------CCCCCcCcccHHHHhcccCCC
Q 004860 277 RVSKAKGIFTQDFILRGGRKFPLYSKVLGAA------PLKAIVLPAIGN--DV------GIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 277 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~ 342 (727)
+++++++||+++...++.+.++....+.+.. ..+++++..... .. .....+....|++++......
T Consensus 161 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (647)
T PTZ00237 161 ETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKEN 240 (647)
T ss_pred HhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccc
Confidence 9999999999887665655544444433221 123343322110 00 000111335677765432110
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChH-HHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhc
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~-l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (727)
............+++++||+|||||||+||||+++|++ +++........+....+|++++.++++|+.+...++++|+.
T Consensus 241 ~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~ 320 (647)
T PTZ00237 241 NQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSL 320 (647)
T ss_pred cCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhC
Confidence 00111223345779999999999999999999999998 44433333445677889999999999999877778899999
Q ss_pred CcEEEEecCCC-C----hhhHHHHHHHhCCCEEEechHHHHHHHhcCC-----CCCCCccceeEEEeecCCCChhhHHHH
Q 004860 422 GATLALYQGSP-L----ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-----LEGLDWTKIRSFASTGETSNVDDDLWL 491 (727)
Q Consensus 422 G~~lv~~~~~~-~----~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~-----~~~~~l~~Lr~i~~gGe~l~~~~~~~~ 491 (727)
|++++++++.. . +..+++.|+++++|++.++|++++.|++... ....++++||.+++|||++++++.+++
T Consensus 321 G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~ 400 (647)
T PTZ00237 321 GNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYI 400 (647)
T ss_pred CcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHH
Confidence 99999987632 2 5689999999999999999999999987532 234578999999999999999999998
Q ss_pred HhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccC-CCCcccc
Q 004860 492 SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYL-GASDRLL 570 (727)
Q Consensus 492 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~-~~~~~~~ 570 (727)
.+.+ +++++|.||+||++++++..........+++|+|+++++++|+|++|++++.|+. |||++..... +...+|+
T Consensus 401 ~~~~-g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~--GEl~v~~p~~p~~~~gy~ 477 (647)
T PTZ00237 401 ENKL-KIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVNEI--GEVAFKLPMPPSFATTFY 477 (647)
T ss_pred HHhc-CCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCCCCc--eEEEEeccCCchhhCcee
Confidence 8876 5889999999999865543332222334789999999999999999999999985 9999942110 1111222
Q ss_pred -ccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCC
Q 004860 571 -NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649 (727)
Q Consensus 571 -~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~ 649 (727)
+++.+.++|...+ | ||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||.|.+|+|++++++
T Consensus 478 ~~~~~~~~~f~~~~---g--~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~-~~p~V~eaavvg~~~~ 551 (647)
T PTZ00237 478 KNDEKFKQLFSKFP---G--YYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSIL-KHPLVLECCSIGIYDP 551 (647)
T ss_pred CCHHHHHHHHhCCC---C--EEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHH-hCCCceeeEEEeeEcC
Confidence 3344555664322 3 9999999999999999999999999999999999999999996 9999999999999999
Q ss_pred CCCceEEEEEEEecCC---CCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 650 GGGPEVLVIFVVLKKG---FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 650 ~~~~~~l~a~vv~~~~---~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
..+ +.+++||+++++ ...+.+++.+.|++.++++|++|++|+.|+++++||+|+||||+|+.|++++.+.
T Consensus 552 ~~g-~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~ 624 (647)
T PTZ00237 552 DCY-NVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLNDS 624 (647)
T ss_pred CCC-CEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcCC
Confidence 888 899999999853 2345678888899999999999999999999999999999999999999998644
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-80 Score=712.03 Aligned_cols=582 Identities=23% Similarity=0.341 Sum_probs=464.9
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCe--eeecCCCC---CCCCCCcCCCCcccHhhhhccCCCCCCCCCCce
Q 004860 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPK--CILDRTDK---SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTV 193 (727)
Q Consensus 119 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~--~~l~~~~~---~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~ 193 (727)
.+|+.+++++++++..||..+.+.+ .|..++. ++++.... .....+||.++..|.++++++++. .+.+||++
T Consensus 30 ~~y~~~~~~s~~~~~~fw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~wf~g~~~N~~~~~l~~~~-~~~~~~~~ 106 (666)
T PLN02654 30 QQYMEMYKRSVDDPAGFWSDIASQF--YWKQKWEGDEVCSENLDVRKGPISIEWFKGGKTNICYNCLDRNV-EAGNGDKI 106 (666)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhC--CeecCCCcceEeccCCCcccCCccccccCCCEeeHHHHHHHHhh-ccCCCCCE
Confidence 3578899999999999999999985 5777763 56533111 123579999999999999999865 12589999
Q ss_pred EEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHH
Q 004860 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (727)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l 272 (727)
|+++.+. +.+..+++||+||.++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++
T Consensus 107 Al~~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l 184 (666)
T PLN02654 107 AIYWEGN--EPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESL 184 (666)
T ss_pred EEEEEcC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHH
Confidence 9998543 122345899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEEeecccccCCccccchHHHhhhCC---------CcEEEEcCCCC--CCCCC-CCcCcccHHHHhcccC
Q 004860 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---------LKAIVLPAIGN--DVGIP-LREQDLSWKDFLSSVD 340 (727)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~--~~~~~-~~~~~~~~~~~~~~~~ 340 (727)
.+++++++++++|+++...++++.++....+..... ..++....... ..... .......|+++.....
T Consensus 185 ~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (666)
T PLN02654 185 AQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQDVVPNYP 264 (666)
T ss_pred HHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCcccHHHHhhcCC
Confidence 999999999999999987777666655444332211 01111111100 00000 0112344666543211
Q ss_pred CCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHH-HHHhhchhcCCCCCCEEEEecccccccch-HHhHHh
Q 004860 341 YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (727)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (727)
...+.....++|++||+|||||||+||||+++|++++. ........++++++|++++.+|++|.++. +.++++
T Consensus 265 -----~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 339 (666)
T PLN02654 265 -----TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGP 339 (666)
T ss_pred -----CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHH
Confidence 11122345679999999999999999999999999764 44445566889999999999999999987 567899
Q ss_pred hhcCcEEEEecCC---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHh
Q 004860 419 FLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (727)
Q Consensus 419 l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~ 493 (727)
|+.|++++++++. +++..++++|+++++|++.++|++++.|.+... ....++++||.++++||+++++..+++.+
T Consensus 340 L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~ 419 (666)
T PLN02654 340 MLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFN 419 (666)
T ss_pred HHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHH
Confidence 9999999999763 467899999999999999999999999987643 24467899999999999999999999988
Q ss_pred hCCC--CcccccccccccccccccCCCC-CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCcccc
Q 004860 494 KAWY--NAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL 570 (727)
Q Consensus 494 ~~~~--~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~ 570 (727)
.++. +++.+.||+||+++..+...+. .+...+++|+|++|++++|+|++|++++.|+. |||++..++.+.+..|+
T Consensus 420 ~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~--Gel~v~~~~p~~~~gy~ 497 (666)
T PLN02654 420 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECS--GYLCVKKSWPGAFRTLY 497 (666)
T ss_pred HhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCCc--eEEEEcCCCchhhhhhc
Confidence 8753 6899999999998755443331 24466789999999999999999999998874 99999543322222333
Q ss_pred cc-ccccc-cccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecC
Q 004860 571 NA-DHEEV-YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (727)
Q Consensus 571 ~~-~~~~~-~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~ 648 (727)
++ +.+.. +|... +| ||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||+|.+++|+++++
T Consensus 498 ~~~~~~~~~~~~~~---~g--~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~-~~p~V~eaaVvg~~d 571 (666)
T PLN02654 498 GDHERYETTYFKPF---AG--YYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALV-SHPQCAEAAVVGIEH 571 (666)
T ss_pred CChHHHHHhhhhcC---CC--EEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHH-hCCCeeeEEEEeeEc
Confidence 32 23332 33221 23 9999999999999999999999999999999999999999996 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 649 ~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
+..| +.+++||+++++...+ +++++.|+++++++|++|++|+.|+++++||+|+|||++|+.|++++.+.
T Consensus 572 ~~~g-e~~~a~Vvl~~~~~~~-~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~~ 641 (666)
T PLN02654 572 EVKG-QGIYAFVTLVEGVPYS-EELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 641 (666)
T ss_pred CCCC-eEEEEEEEECCCCCCC-HHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcCC
Confidence 8888 9999999999876554 57788899999999999999999999999999999999999999998764
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-83 Score=863.10 Aligned_cols=641 Identities=19% Similarity=0.204 Sum_probs=523.3
Q ss_pred HHHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCC-------C
Q 004860 12 DLMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-------P 83 (727)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~-------~ 83 (727)
|++-+++...+..+|.+.++++.+. +++++||++||++ +++.|++.|..+.+|+ ||+|+++++..... .
T Consensus 340 n~lplr~~~~~~~tf~~~l~~v~~~~~~a~~hq~~p~~~-iv~~l~~~r~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~ 416 (5163)
T PRK12316 340 NTQVLRSVFDGRTRVATLLAGVKDTVLGAQAHQDLPFER-LVEALKVERSLSHSPL--FQVMYNHQPLVADIEALDTVAG 416 (5163)
T ss_pred eeEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhCCCCCCCCCCc--EEEEEEeecccccccccccCCC
Confidence 3455677777777888888888888 9999999999999 9999999999888998 99999988632111 1
Q ss_pred cc--ccCChhhhcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeee--ecCC
Q 004860 84 LY--WFPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRT 158 (727)
Q Consensus 84 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~ 158 (727)
+. ..+......++|+.+.+.+.++++.+.+ |+. ++|++++++++.++|.++|+++..+++.+...+ ++..
T Consensus 417 ~~~~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~i~~~p~~~i~~l~~~~~~ 491 (5163)
T PRK12316 417 LEFGQLEWKSRTTQFDLTLDTYEKGGRLHAALTYAT-----DLFEARTVERMARHWQNLLRGMVENPQARVDELPMLDAE 491 (5163)
T ss_pred ceEEeeccCCCccceeEEEEEEEcCCcEEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHHhccccccccCCCCCHH
Confidence 11 1122234568899998888888888888 999 999999999999999999999988888877765 3333
Q ss_pred CCCCCCCCcCCCCcccHhhhhccC--CCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCE
Q 004860 159 DKSKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235 (727)
Q Consensus 159 ~~~~~~~~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~ 235 (727)
+.......|+..........+++. ..+++++||++|+++.++ ++||+||+++++++|+.|.+. +++|++
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~~~--------~~TY~eL~~~~~~lA~~L~~~gv~~g~~ 563 (5163)
T PRK12316 492 ERGQLVEGWNATAAEYPLQRGVHRLFEEQVERTPEAPALAFGEE--------TLDYAELNRRANRLAHALIERGVGPDVL 563 (5163)
T ss_pred HHHHHHHHhcCccccCCCCCCHHHHHHHHHHHCCCCeEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 332333456544322221223332 234689999999998777 999999999999999999999 999999
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEc
Q 004860 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLP 315 (727)
Q Consensus 236 Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 315 (727)
|+|+++|++++++++|||+|+|++|||+||.+|.+++.+++++++++++|++....... + ......++.+.
T Consensus 564 V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~---~------~~~~~~~~~~~ 634 (5163)
T PRK12316 564 VGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKL---P------LAAGVQVLDLD 634 (5163)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhC---C------cccCceEEEec
Confidence 99999999999999999999999999999999999999999999999999987532110 0 00011112111
Q ss_pred CCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCC
Q 004860 316 AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK 395 (727)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~ 395 (727)
... .+ ..... ...+.....++++|||+|||||||+||||+++|+++++.+.+....++++
T Consensus 635 ~~~------------~~---~~~~~-----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~ 694 (5163)
T PRK12316 635 RPA------------AW---LEGYS-----EENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLG 694 (5163)
T ss_pred Ccc------------hh---hccCC-----CCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCC
Confidence 000 00 00000 11122334678999999999999999999999999999999999999999
Q ss_pred CCCEEEEecccccccchHHhHHhhhcCcEEEEecC--CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccce
Q 004860 396 VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473 (727)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~L 473 (727)
++|++++++|++|+++++++|.+|++|+++++.+. ..++..+++.|++++||++.++|++++.|++... ..++++|
T Consensus 695 ~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l 772 (5163)
T PRK12316 695 VGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSL 772 (5163)
T ss_pred CCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCc
Confidence 99999999999999999999999999999999864 3578899999999999999999999999987532 3357899
Q ss_pred eEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCC-CCCccccccccCCCCceEEEECCCCCcCCCCCCe
Q 004860 474 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (727)
Q Consensus 474 r~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~g 552 (727)
|.+++|||++++++.+.+.+.+++++++|.||+||+++.++.... .......++|+|++|++++|+|++++++|.|+.
T Consensus 773 ~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~- 851 (5163)
T PRK12316 773 RRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVL- 851 (5163)
T ss_pred cEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCCCCc-
Confidence 999999999999999988888888899999999999864433322 222345689999999999999999999999996
Q ss_pred eeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHH
Q 004860 553 VGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (727)
Q Consensus 553 iGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (727)
|||+| +.||++ +++.|++.|..+|+.+|.+||+|||+|++++||+|+|+||+|||||++|+||+|+||
T Consensus 852 -GEl~i~G~~v~~GYl~------~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EI 924 (5163)
T PRK12316 852 -GELYLAGRGLARGYHG------RPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEI 924 (5163)
T ss_pred -eEEEecccccChhhCC------ChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHH
Confidence 99998 467776 445788899999988889999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCch
Q 004860 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK 707 (727)
Q Consensus 628 E~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GK 707 (727)
|++|. +||+|.+|+|++.+ + +.++|||++.++.....++ ++++++++||+||+|+.|+++++||+|+|||
T Consensus 925 E~~l~-~~p~V~~a~V~~~~----~-~~lva~vv~~~~~~~~~~~----l~~~l~~~Lp~y~vP~~i~~v~~lP~t~~GK 994 (5163)
T PRK12316 925 EARLL-EHPWVREAAVLAVD----G-KQLVGYVVLESEGGDWREA----LKAHLAASLPEYMVPAQWLALERLPLTPNGK 994 (5163)
T ss_pred HHHHH-hCCCcceEEEEEcC----C-CeEEEEEEccCCCCCCHHH----HHHHHHhhCCCccCCCeEEEHhhCCCCCCCC
Confidence 99995 99999999999875 4 7899999988765444444 4555778899999999999999999999999
Q ss_pred hhHHHHHHHH
Q 004860 708 LLRRVLRDQI 717 (727)
Q Consensus 708 vdR~~L~~~~ 717 (727)
+||++|++..
T Consensus 995 idr~~L~~~~ 1004 (5163)
T PRK12316 995 LDRKALPAPE 1004 (5163)
T ss_pred hhHHhhcCcc
Confidence 9999998754
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-83 Score=862.70 Aligned_cols=633 Identities=18% Similarity=0.201 Sum_probs=522.1
Q ss_pred HHHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCC----Cccc
Q 004860 12 DLMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP----PLYW 86 (727)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~----~~~~ 86 (727)
|++-+++......+|.+.++++.+. +++++||++||++ |++.++++++.+.+|+ ||+||++++..... ....
T Consensus 2889 ntlPlrv~l~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~-iv~~l~~~r~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~ 2965 (5163)
T PRK12316 2889 NTQVLRAQVDAQLAFRDLLGQVKEQALGAQAHQDLPFEQ-LVEALQPERSLSHSPL--FQVMYNHQSGERAAAQLPGLHI 2965 (5163)
T ss_pred cceeEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHhccccccCCCCc--eeEEEeeeccccccccCCCcee
Confidence 4456677777888888888888888 9999999999999 9999999998888888 99999998754322 1111
Q ss_pred c--CChhhhcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeee--ecCCCCC
Q 004860 87 F--PSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKS 161 (727)
Q Consensus 87 ~--~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~ 161 (727)
. .......++|+++.+...++++...+ |+. ++|++.++++|.++|.++|+++...++.+...+ ++..+..
T Consensus 2966 ~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~f~~lL~~l~~~p~~~i~~l~~~~~~~~~ 3040 (5163)
T PRK12316 2966 ESFAWDGAATQFDLALDTWESAEGLGASLTYAT-----DLFDARTVERLARHWQNLLRGMVENPQRSVDELAMLDAEERG 3040 (5163)
T ss_pred EeeeccCCccceeeEEEEEecCCcEEEEEEECc-----CCCCHHHHHHHHHHHHHHHHHHHhCCCCchhhccCCCHHHHH
Confidence 1 11234578899998888888888888 999 999999999999999999999988887776654 3333333
Q ss_pred CCCCCcCCCCcccHhhhhccC--CCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEE
Q 004860 162 KHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238 (727)
Q Consensus 162 ~~~~~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai 238 (727)
..+..|+......+...+++. ..+++++||++|+++.++ .+||+||+++++++|++|.+. +++|++|+|
T Consensus 3041 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l 3112 (5163)
T PRK12316 3041 QLLEAWNATAAEYPLERGVHRLFEEQVERTPDAVALAFGEQ--------RLSYAELNRRANRLAHRLIERGVGPDVLVGV 3112 (5163)
T ss_pred HHHHHhCCCCcCCCCcCCHHHHHHHHHHhCCCCeeEeeCCe--------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 334567765444333334443 345689999999999887 999999999999999999999 999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCC
Q 004860 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIG 318 (727)
Q Consensus 239 ~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 318 (727)
+++|++++++++|||+|+|++||||||.+|.+|+.+++++++++++|++.... .+ ......++.+....
T Consensus 3113 ~~~~s~~~iv~~lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~-----~~------~~~~~~~~~~~~~~ 3181 (5163)
T PRK12316 3113 AVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLR-----LP------LAQGVQVLDLDRGD 3181 (5163)
T ss_pred EccCCHHHHHHHHHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCcccc-----CC------ccCCccEEEecccc
Confidence 99999999999999999999999999999999999999999999999976420 00 00011122221100
Q ss_pred CCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCC
Q 004860 319 NDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGD 398 (727)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d 398 (727)
.. .....+.....++++|||+|||||||+||||+++|+++++.+.+....++++++|
T Consensus 3182 ------------------~~-----~~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d 3238 (5163)
T PRK12316 3182 ------------------EN-----YAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGD 3238 (5163)
T ss_pred ------------------cc-----ccccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCccc
Confidence 00 0011122345678999999999999999999999999999999998899999999
Q ss_pred EEEEecccccccchHHhHHhhhcCcEEEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEE
Q 004860 399 VYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476 (727)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i 476 (727)
+++++++++||.+++++|.+|++|+++++.+.. .++..+.+.++++++|++.++|+++..+.... ....+++||.+
T Consensus 3239 ~~l~~~~~~fd~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~--~~~~~~~lr~~ 3316 (5163)
T PRK12316 3239 RVLQFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEE--DAHRCTSLKRI 3316 (5163)
T ss_pred EEEeecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhcc--ccccCCcceEE
Confidence 999999999999999999999999999998643 36788999999999999999999999988653 23346799999
Q ss_pred EeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCC-CCccccccccCCCCceEEEECCCCCcCCCCCCeeee
Q 004860 477 ASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE 555 (727)
Q Consensus 477 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGe 555 (727)
++|||++++++.++|.. +++++|.||+||+++.++..... ......++|+|++|++++|+|++++++|.|+. ||
T Consensus 3317 ~~gGe~l~~~~~~~~~~---~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GE 3391 (5163)
T PRK12316 3317 VCGGEALPADLQQQVFA---GLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEPVPVGAL--GE 3391 (5163)
T ss_pred EEccccCCHHHHHHHHh---CCcEeeccCCCccEeeEeEEeccCCCCCCCccceecCCCEEEEECCCCCCCCCCCC--ce
Confidence 99999999999888872 56799999999999876654432 22345789999999999999999999999996 99
Q ss_pred EEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHH
Q 004860 556 VGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERV 630 (727)
Q Consensus 556 l~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~ 630 (727)
|+| +.||+++ ++.|+++|..+|+.+|.+||+|||+||+++||.|+|+||+|+|||++|+||+|+|||++
T Consensus 3392 l~i~G~~v~~GY~~~------~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~qvKi~G~rIel~eIE~~ 3465 (5163)
T PRK12316 3392 LYLGGEGLARGYHNR------PGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEAR 3465 (5163)
T ss_pred EEecccccchhcCCC------hhhchhhCCCCCCCCCCeeEecCceEEECCCCCEEEecccCCeEeeCcEeeChHHHHHH
Confidence 998 5677764 45889999999998899999999999999999999999999999999999999999999
Q ss_pred HhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhH
Q 004860 631 CDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLR 710 (727)
Q Consensus 631 l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR 710 (727)
|. +||+|.+|+|++.. + ++++|||++..+.... .+.++++|++.||.||+|..|+++++||+|+|||+||
T Consensus 3466 l~-~~~~V~~a~v~~~~----~-~~l~a~vv~~~~~~~~----~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~t~~GKvdr 3535 (5163)
T PRK12316 3466 LL-EHPWVREAVVLAVD----G-RQLVAYVVPEDEAGDL----REALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDR 3535 (5163)
T ss_pred HH-hCCCcceEEEEEcc----C-CeEEEEEEcCCcCccc----HHHHHHHHHhhCCcccCcceeeeHhhcCCCCCcchhH
Confidence 95 99999999998865 4 7899999987543322 3446667889999999999999999999999999999
Q ss_pred HHHHHHH
Q 004860 711 RVLRDQI 717 (727)
Q Consensus 711 ~~L~~~~ 717 (727)
++|++..
T Consensus 3536 ~~L~~~~ 3542 (5163)
T PRK12316 3536 KALPRPD 3542 (5163)
T ss_pred HhcCCCc
Confidence 9997643
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-79 Score=705.06 Aligned_cols=576 Identities=23% Similarity=0.379 Sum_probs=464.1
Q ss_pred CHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCCCCCCCCcCCCCcccHhhhhccCCCCCCCCCCceEEEEec
Q 004860 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWRE 199 (727)
Q Consensus 120 ~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~ 199 (727)
+|+.+++++++++..||..+++. +.|++++.++++.. ..+..+||.++..|.++++++++. +.+|+++|+++.+
T Consensus 2 ~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~Al~~~~ 75 (628)
T TIGR02316 2 RYEEFYQRSIEQPEAFWAEQARR--IDWQTPPQRILDYS--NPPFARWFAGGRTNLCHNALDRHL--DERGEQLALVTVS 75 (628)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHh--CCeecCCcccccCC--CCCcCccCCCCEeeHHHHHHHHHh--CcCCCCeEEEEEc
Confidence 46888999999999999999997 47999999987542 245679999999999999998765 6789999999854
Q ss_pred CCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHh
Q 004860 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278 (727)
Q Consensus 200 ~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~ 278 (727)
. +.+..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++
T Consensus 76 ~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~ 153 (628)
T TIGR02316 76 S--ETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDD 153 (628)
T ss_pred C--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHh
Confidence 2 123345899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEeecccccCCccccchHHHhhh------CCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCcc
Q 004860 279 SKAKGIFTQDFILRGGRKFPLYSKVLGA------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (727)
Q Consensus 279 ~~~~~il~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (727)
++++++|+++...++++.++....+.+. ....++++....... ........+|.++...... ...+...
T Consensus 154 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~ 228 (628)
T TIGR02316 154 ATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM-RLIPGRDVDYAALRTQHED----AQVPVEW 228 (628)
T ss_pred cCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-CcccCccccHHHHhhcccc----CCCCcee
Confidence 9999999998776666665554443321 123344443221110 0111134567666543211 1112223
Q ss_pred CCCCCeEEEEeCCCCCCCCCeEEecChHHH-HHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEEEecC
Q 004860 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQG 430 (727)
Q Consensus 353 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~-~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~ 430 (727)
..+++++||+|||||||+||||+++|++++ +........++++++|++++.++++|+++. +.++++|+.|++++++++
T Consensus 229 ~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~ 308 (628)
T TIGR02316 229 LESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEG 308 (628)
T ss_pred cCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCC
Confidence 467999999999999999999999999975 444455566889999999999999999986 668899999999999875
Q ss_pred C---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccccc
Q 004860 431 S---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (727)
Q Consensus 431 ~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (727)
. +++..++++|+++++|+++++|++++.|.+... ....++++||.+++|||++++++.+++...+ +..+++.||
T Consensus 309 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG 387 (628)
T TIGR02316 309 LPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYW 387 (628)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEeccc
Confidence 3 467889999999999999999999999987642 2355789999999999999999998887765 578999999
Q ss_pred ccccccccccCCC---CCCccccccccCCCCceEEEECC-CCCcCCCCCCeeeeEEEe-c---ccCCCCcccccc-cccc
Q 004860 506 GTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLF-P---LYLGASDRLLNA-DHEE 576 (727)
Q Consensus 506 ~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~-~---~y~~~~~~~~~~-~~~~ 576 (727)
+||++..++.... ..+...+++|+|++|++++|+|+ +|+++|.|+. |||++. + +|+. .++++ +.+.
T Consensus 388 ~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~--Gel~v~gp~~~g~~~---~~~~~~~~~~ 462 (628)
T TIGR02316 388 QTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEK--GVLTVVPPLPPGCLS---TVWGDDARFL 462 (628)
T ss_pred ccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCc--EEEEEecCCCccccc---cccCChHHHH
Confidence 9999854433222 12334578899999999999997 7999999985 999994 2 3332 22232 2221
Q ss_pred -ccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceE
Q 004860 577 -VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (727)
Q Consensus 577 -~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~ 655 (727)
.+|... +.+||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.
T Consensus 463 ~~~~~~~----~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~-~~p~V~ea~Vvg~~d~~~g-~~ 536 (628)
T TIGR02316 463 KTYWSHF----KRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVS-SHPSVAEVAVVGVHDELKG-QV 536 (628)
T ss_pred HhhhhcC----CCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHH-hCCCcceEEEEeeecCCCC-eE
Confidence 222211 2459999999999999999999999999999999999999999996 9999999999999999888 99
Q ss_pred EEEEEEecCCCCC----ChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 656 LVIFVVLKKGFTS----QPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 656 l~a~vv~~~~~~~----~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
+++||+++++... +.+.+.+.|+++++++|++|++|+.|+++++||+|+|||++|+.|++++++.
T Consensus 537 ~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~~ 605 (628)
T TIGR02316 537 AVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGR 605 (628)
T ss_pred EEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcCC
Confidence 9999999876432 2346777889999999999999999999999999999999999999988654
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-82 Score=793.18 Aligned_cols=667 Identities=16% Similarity=0.131 Sum_probs=505.5
Q ss_pred HHHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCCCccccCCh
Q 004860 12 DLMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPPLYWFPSL 90 (727)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 90 (727)
|...+++...+..+|.+.++++.++ +++++||++||++ |++.+++.+..+.+|. +|+++|..+...... .+
T Consensus 80 ~~lplr~~~~~~~t~~~~l~~~~~~~~~~~~h~~~p~~~-i~~~l~~~~~~~~~p~-lf~~~~~~~~~~~~~--~~---- 151 (1389)
T TIGR03443 80 RPFVLRLNITPELSFLQLYAKVSEEEKEGASDIGVPFDE-LSEHIQAAKKLERTPP-LFRLAFQDAPDNQQT--TY---- 151 (1389)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHHHHhcccCCHHH-HHHHhccccCCCCCCc-cEEEEeecCCccccc--cc----
Confidence 5567788888889999999999988 9999999999999 9999999887777762 267655433221111 11
Q ss_pred hhhcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeee--ecCCCCCCC----
Q 004860 91 DQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKH---- 163 (727)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~---- 163 (727)
....++||.+.+.+.++++.+.+ |+. ++|++.+++++.++|..+|+++...++.+...+ ++..+....
T Consensus 152 ~~~~~~dl~~~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~f~~lL~~~~~~p~~~l~~l~~~~~~~~~~~~~~~ 226 (1389)
T TIGR03443 152 STGSTTDLTVFLTPSSPELELSIYYNS-----LLFSSDRITIVADQLAQLLSAASSNPDEPIGKVSLITPSQKSLLPDPT 226 (1389)
T ss_pred ccCCccceEEEEEecCCcEEEEEEEch-----hcCCHHHHHHHHHHHHHHHHHHHhCcCCceecccCCCHHHHhhhhccc
Confidence 34568899988888888888888 999 999999999999999999999988888877654 332221111
Q ss_pred -CCCcCCCCcccHhhhhccCCCCCCCCCCceEEEEecCCC-CCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEc
Q 004860 164 -GGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRC-DESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDM 240 (727)
Q Consensus 164 -~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~ 240 (727)
...|... .......+.+ +++++||++|+++..... .....+++||+||+++++++|++|.+. +++||+|+|++
T Consensus 227 ~~~~~~~~--~~~l~~~~~~--~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~ 302 (1389)
T TIGR03443 227 KDLDWSGF--RGAIHDIFAD--NAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYA 302 (1389)
T ss_pred cccCcCcc--cCcHHHHHHH--HHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEe
Confidence 1224221 0111222332 457899999998642210 011235899999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhh-C----CCcEEEEc
Q 004860 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-A----PLKAIVLP 315 (727)
Q Consensus 241 ~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~----~~~~~v~~ 315 (727)
+|++++++++|||+|+|++++|+||.+|.+++.+++++++++++++...... ........... . ....+.+.
T Consensus 303 ~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1389)
T TIGR03443 303 YRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGT---LDQLVRDYIDKELELRTEIPALALQ 379 (1389)
T ss_pred cCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccc---cchhhhhhhhcccccccccceEEec
Confidence 9999999999999999999999999999999999999999999998764210 00111111000 0 00011111
Q ss_pred CCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCC
Q 004860 316 AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK 395 (727)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~ 395 (727)
.......... .....+....... ...........+++++||+|||||||.||||+++|+++++.+.+....+++.
T Consensus 380 ~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~ 454 (1389)
T TIGR03443 380 DDGSLVGGSL---EGGETDVLAPYQA--LKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLS 454 (1389)
T ss_pred cccccccccc---ccccccccccccc--cccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCC
Confidence 0000000000 0000011100000 0000111234678999999999999999999999999999998888889999
Q ss_pred CCCEEEEecccccccchHHhHHhhhcCcEEEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccce
Q 004860 396 VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473 (727)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~L 473 (727)
++|+++++++++|+.+++++|.+|+.|+++++++.. .++..+++.|++++||++.++|++++.|.... ...+++|
T Consensus 455 ~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~l 531 (1389)
T TIGR03443 455 ENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSL 531 (1389)
T ss_pred CCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCc
Confidence 999999999999999999999999999999998643 25778999999999999999999999987542 2357899
Q ss_pred eEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCC----------CccccccccCCCCceEEEECCC-
Q 004860 474 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDEC- 542 (727)
Q Consensus 474 r~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~vld~~- 542 (727)
|.+++|||++++.....+....++++++|.||+||++++++...... .....++|+|+++++++|+|++
T Consensus 532 r~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~ 611 (1389)
T TIGR03443 532 HHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRND 611 (1389)
T ss_pred cEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCcc
Confidence 99999999999998888877777889999999999986554322110 1124679999999999999965
Q ss_pred -CCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccC----------------------CCceeeeeC
Q 004860 543 -GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMY----------------------KGMCLRRHG 594 (727)
Q Consensus 543 -~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~----------------------~g~~~yrTG 594 (727)
++++|.|+. |||+| +.||++. ++.|++.|..+|+. ++.+||+||
T Consensus 612 ~~~~~~~G~~--GEL~i~G~~v~~GY~~~------p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TG 683 (1389)
T TIGR03443 612 RTQTCGVGEV--GEIYVRAGGLAEGYLGL------PELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTG 683 (1389)
T ss_pred CCCcCCCCCc--eEEEecccccchhcCCC------hhHhhhhccCCcccCcccccccccccccccccccCCCccceeecC
Confidence 578999996 99998 4677764 44777788765431 346799999
Q ss_pred ceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCC-CCC----
Q 004860 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF-TSQ---- 669 (727)
Q Consensus 595 Dl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~-~~~---- 669 (727)
|+|++++||+|+|+||.|||||++|+||+|.|||++|. +||.|.+++|++.++...+ +.+++|+++..+. ...
T Consensus 684 Dlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~-~~p~V~~a~v~~~~~~~~~-~~lva~vv~~~~~~~~~~~~~ 761 (1389)
T TIGR03443 684 DLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLS-QHPLVRENVTLVRRDKDEE-PTLVSYIVPQDKSDELEEFKS 761 (1389)
T ss_pred CceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHH-hCcchheeEEEEeeCCCCC-eEEEEEEeccCcccccccccc
Confidence 99999999999999999999999999999999999995 8999999999988877666 8999999986321 100
Q ss_pred -----------------hHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHH
Q 004860 670 -----------------PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 716 (727)
Q Consensus 670 -----------------~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 716 (727)
.....+.++++++++||.||+|..|+++++||+|+||||||++|++.
T Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~ 825 (1389)
T TIGR03443 762 EVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFP 825 (1389)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCC
Confidence 01234567888999999999999999999999999999999999754
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-82 Score=851.94 Aligned_cols=642 Identities=16% Similarity=0.146 Sum_probs=512.1
Q ss_pred HHHHcCCCchhh---HHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCCC----
Q 004860 12 DLMKVGLKLEEA---EEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPP---- 83 (727)
Q Consensus 12 ~~~~~~~~~~~~---~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~---- 83 (727)
|++-+|+...+. .++.++|+++.+. +++++||++||++ +++..+..+.. ++ |++++++++......
T Consensus 3551 Ntlp~Rv~~~~~~~~~t~~~~L~~v~~~~~~~~~~q~~~l~~-i~~~~~~~~~~---~L--F~t~~v~~n~~~~~~~~~~ 3624 (4334)
T PRK05691 3551 NSIALRVQLPAAGQRCSVRQWLQGLLDSNMELREYEYLPLVA-IQECSELPKGQ---PL--FDSLFVFENAPVEVSVLDR 3624 (4334)
T ss_pred cccceEEeeCCccCCCcHHHHHHHHHHHHHHHhhccCCCHHH-HHHHhcCCCCC---CC--ccEEEEeecCCcchhhhcc
Confidence 355666665432 4666666666666 9999999999999 99887765444 34 777777776532210
Q ss_pred ---ccccCC-hhhhcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeee--ec
Q 004860 84 ---LYWFPS-LDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LD 156 (727)
Q Consensus 84 ---~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~ 156 (727)
...... .....+++|++.+.. ++.+...+ |++ ++|++.++++|.++|.++|+++...++.+...+ ++
T Consensus 3625 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~l~~~l~y~~-----~~~~~~~~~~l~~~f~~~L~~l~~~~~~~~~~~~~~~ 3698 (4334)
T PRK05691 3625 AQSLNASSDSGRTHTNFPLTAVCYP-GDDLGLHLSYDQ-----RYFDAPTVERLLGEFKRLLLALVQGFHGDLSELPLLG 3698 (4334)
T ss_pred cccccccccccccccCCCeEEEEec-CCceEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHHhCcCCChhhcCCCC
Confidence 000010 123356677665443 34566666 888 999999999999999999999988888777665 33
Q ss_pred CCCCCCCCCCcCCCCcccHhhhhccC--CCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCC
Q 004860 157 RTDKSKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKG 233 (727)
Q Consensus 157 ~~~~~~~~~~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~g 233 (727)
..+....+..|+......+...+++. +.|++++||++|+++.+. ++||+||+++++++|++|.+. +++|
T Consensus 3699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~~tY~eL~~~~~~la~~L~~~gv~~~ 3770 (4334)
T PRK05691 3699 EQERDFLLDGCNRSERDYPLEQSYVRLFEAQVAAHPQRIAASCLDQ--------QWSYAELNRAANRLGHALRAAGVGVD 3770 (4334)
T ss_pred HHHHHHHHHhhCCccCCCccccCHHHHHHHHHHhCCCceEEEcCCC--------cccHHHHHHHHHHHHHHHHHcCCCCC
Confidence 33333445567766555444555554 356789999999999888 999999999999999999999 9999
Q ss_pred CEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC----C
Q 004860 234 DAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP----L 309 (727)
Q Consensus 234 d~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~----~ 309 (727)
++|+|++++|+++++++|||+|+|++||||||.+|.+|+.+++++++++++|+++...... ..+..... .
T Consensus 3771 ~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~ 3844 (4334)
T PRK05691 3771 QPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQA------RALLDELGCANRP 3844 (4334)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchh------hhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999988543111 11111110 0
Q ss_pred cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhc
Q 004860 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 389 (727)
Q Consensus 310 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~ 389 (727)
.+.+. ++..... .....+.....|+++|||+|||||||+||||+++|+++++.+.+..
T Consensus 3845 ~~~~~------------------~~~~~~~----~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~ 3902 (4334)
T PRK05691 3845 RLLVW------------------EEVQAGE----VASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKV 3902 (4334)
T ss_pred ceeee------------------ccccccc----ccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHH
Confidence 11111 0100000 0011122345679999999999999999999999999999999988
Q ss_pred hhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCC
Q 004860 390 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG 467 (727)
Q Consensus 390 ~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~ 467 (727)
..++++++|+++++++++||.+++++|.+|+.|+++++++.. .++..+++.|+++++|++.++|++++.|+... .
T Consensus 3903 ~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~ 3979 (4334)
T PRK05691 3903 PYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---R 3979 (4334)
T ss_pred HhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---c
Confidence 899999999999999999999999999999999999998753 36789999999999999999999999987642 2
Q ss_pred CCccceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCC---CCccccccccCCCCceEEEECCCCC
Q 004860 468 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGV 544 (727)
Q Consensus 468 ~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~vld~~~~ 544 (727)
..+++||.+++|||++++++.+.|.+..++++++|.||+||+++.++..... ......++|+|++|++++|+|++++
T Consensus 3980 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~ 4059 (4334)
T PRK05691 3980 QALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALE 4059 (4334)
T ss_pred ccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCC
Confidence 3478999999999999999998888888889999999999999765543321 1223458999999999999999999
Q ss_pred cCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccC-CCceeeeeCceEEEecCceEEEEeecCCeeecC
Q 004860 545 PYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618 (727)
Q Consensus 545 ~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~-~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~ 618 (727)
++|.|.. |||+| +.||+++ ++.|+++|..+|+. +|.|||||||+|||++||+|+|+||+|+|||++
T Consensus 4060 ~~p~g~~--GEL~i~G~~v~~GY~~~------~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~ 4131 (4334)
T PRK05691 4060 LVPLGAV--GELCVAGTGVGRGYVGD------PLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIR 4131 (4334)
T ss_pred CCCCCCc--eEEEEecccccccccCC------cccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEec
Confidence 9999985 99998 5777774 45899999999974 688999999999999999999999999999999
Q ss_pred ceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcC
Q 004860 619 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP 698 (727)
Q Consensus 619 G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~ 698 (727)
|+||+++|||++|. .+|+|.+|+|+... ...+ +.++||++...+.. +...+.+.|+++|+++||+||+|+.|+.++
T Consensus 4132 G~riel~eIE~~l~-~~~~v~~a~v~~~~-~~~~-~~l~a~~~~~~~~~-~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~ 4207 (4334)
T PRK05691 4132 GYRIELGEIEARLH-EQAEVREAAVAVQE-GVNG-KHLVGYLVPHQTVL-AQGALLERIKQRLRAELPDYMVPLHWLWLD 4207 (4334)
T ss_pred eEEecHHHHHHHHH-hCCCccEEEEEEec-CCCC-cEEEEEEeCCcccc-cchHHHHHHHHHHHhhCChhhcCcceeecc
Confidence 99999999999995 99999998876654 3445 79999999876532 224566778889999999999999999999
Q ss_pred CCCCCCCchhhHHHHHHH
Q 004860 699 EFPRTASNKLLRRVLRDQ 716 (727)
Q Consensus 699 ~lP~t~~GKvdR~~L~~~ 716 (727)
+||+|+||||||++|++.
T Consensus 4208 ~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691 4208 RLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred cCCCCCCCcccHhhcCCC
Confidence 999999999999999875
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-79 Score=704.56 Aligned_cols=606 Identities=27% Similarity=0.416 Sum_probs=480.4
Q ss_pred ccccCChhhhcccchHHHHHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCCCCC
Q 004860 84 LYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKH 163 (727)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 163 (727)
..|.|.+.....++|.-+.+..+.. |+..+.+|+.+++++++++..||..+++...+.|.+++..+++.. ..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~--~~~ 76 (655)
T PRK03584 4 PLWTPSAERIAASRMTAFIRWLAAR-----RGLSFDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPYTVVLAGR--RMP 76 (655)
T ss_pred CCCCCChhhcccchHHHHHHHHHHH-----hCCChHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCCcEeecCC--CCC
Confidence 3677776655667776554443221 333345778899999999999999999987778999998887642 234
Q ss_pred CCCcCCCCcccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC
Q 004860 164 GGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242 (727)
Q Consensus 164 ~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~ 242 (727)
..+||.++..|++++++++ .+|+++|+++.+. .+..+++||+||.++++++|+.|+++ +++||+|+|+++|
T Consensus 77 ~~~wf~~~~~n~~~~~~~~-----~~~~~~Al~~~~~---~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n 148 (655)
T PRK03584 77 GARWFPGARLNYAENLLRH-----RRDDRPAIIFRGE---DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPN 148 (655)
T ss_pred CCeeCCCCEeeHHHHhhcc-----CCCCCeEEEEECC---CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 5799999999999999863 4689999998764 23456899999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhh---hCCC--cEEEEcCC
Q 004860 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG---AAPL--KAIVLPAI 317 (727)
Q Consensus 243 s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~~--~~~v~~~~ 317 (727)
++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...++++.++....+.+ ..+. .++++...
T Consensus 149 ~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 228 (655)
T PRK03584 149 IPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYL 228 (655)
T ss_pred CHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecC
Confidence 999999999999999999999999999999999999999999999877666665555444432 2222 34444322
Q ss_pred CCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHH-HHHHhhchhcCCCC
Q 004860 318 GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RCTAEGWAHIDLKV 396 (727)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~-~~~~~~~~~~~~~~ 396 (727)
..............|++++..... .........+++++||+|||||||+||||+++|++++ +.+......+++.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 304 (655)
T PRK03584 229 GPAAAAAALPGALLWEDFLAPAEA----AELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGP 304 (655)
T ss_pred CCcccccccCCcccHHHHhhcccc----CCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCC
Confidence 211111112234567777652211 1122234567999999999999999999999999875 44555566788999
Q ss_pred CCEEEEecccccccchHHhHHhhhcCcEEEEecCC---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCcc
Q 004860 397 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWT 471 (727)
Q Consensus 397 ~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~ 471 (727)
+|+++++++++|+++.+ ++++|+.|++++++++. +++..++++|+++++|++.++|++++.|..... ....+++
T Consensus 305 ~d~~~~~~~~~~~~~~~-~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~ 383 (655)
T PRK03584 305 GDRFFWYTTCGWMMWNW-LVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLS 383 (655)
T ss_pred CCEEEEcCCchHHhHHH-HHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChh
Confidence 99999999999986543 67899999999998753 467899999999999999999999999986532 2346789
Q ss_pred ceeEEEeecCCCChhhHHHHHhhCC-CCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCC
Q 004860 472 KIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQ 550 (727)
Q Consensus 472 ~Lr~i~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~ 550 (727)
+||.+++|||++++++.+++.+.++ ++.+++.||+||++..+.......+...+++|.|++|++++|+|++|+++ .|+
T Consensus 384 sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g~ 462 (655)
T PRK03584 384 ALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPV-VGE 462 (655)
T ss_pred heEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCCC-CCC
Confidence 9999999999999999999988763 57899999999987654433333445567899999999999999999999 677
Q ss_pred CeeeeEEEecccCCCCcccccccc-c---cccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHH
Q 004860 551 PCVGEVGLFPLYLGASDRLLNADH-E---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626 (727)
Q Consensus 551 ~giGel~v~~~y~~~~~~~~~~~~-~---~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~e 626 (727)
. |||+|...+.+...+|++... + +.+|... +| ||+|||+|++|+||+++|+||+||+||++|+||+|.|
T Consensus 463 ~--GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~---~g--~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~E 535 (655)
T PRK03584 463 V--GELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTF---PG--VWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAE 535 (655)
T ss_pred c--eEEEEccCCCCCcceeeCCCccchHHHhhhccC---CC--EeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHH
Confidence 5 999994322222222333222 1 1233222 23 8899999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCc
Q 004860 627 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASN 706 (727)
Q Consensus 627 IE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~G 706 (727)
||++|. +||+|.+|+|++.+++..+ +.+++||+++++...+ +++.+.|+++++++|++|++|..|+++++||+|+||
T Consensus 536 IE~~l~-~~p~V~ea~vvg~~~~~~g-~~~~a~vv~~~~~~~~-~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sG 612 (655)
T PRK03584 536 IYRQVE-ALPEVLDSLVIGQEWPDGD-VRMPLFVVLAEGVTLD-DALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSG 612 (655)
T ss_pred HHHHHH-hCCCcceEEEEeeEcCCCC-EEEEEEEEECCCCCCc-HHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCc
Confidence 999996 9999999999999998777 9999999998875544 566778888999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhh
Q 004860 707 KLLRRVLRDQIKHE 720 (727)
Q Consensus 707 KvdR~~L~~~~~~~ 720 (727)
||+|+.|++++.+.
T Consensus 613 Ki~r~~lr~~~~~~ 626 (655)
T PRK03584 613 KKVELPVKKLLHGR 626 (655)
T ss_pred cchHHHHHHHHcCC
Confidence 99999999988654
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-79 Score=703.48 Aligned_cols=579 Identities=27% Similarity=0.441 Sum_probs=469.9
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCCCCCCCCcCCCCcccHhhhhccCCCCCCCCCCceEEEEe
Q 004860 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (727)
Q Consensus 119 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (727)
.+|+.+++++++++..||..+.+. ...|.+++.++++.. .....+||.++..|.+++++++++ +.+||++|+++.
T Consensus 5 ~~y~~~~~~s~~~~~~fw~~~~~~-~~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~Al~~~ 79 (625)
T TIGR02188 5 EQYKELYEESIEDPDKFWAKLARE-LLDWFKPFTKVLDWS--FPPFYKWFVGGELNVSYNCVDRHL--EARPDKVAIIWE 79 (625)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHh-cCceecCCceeecCC--CCCCCeeCCCCEEEHHHHHHHHhh--ccCCCCeEEEEE
Confidence 467889999999999999999987 357999999987643 235689999999999999998765 679999999986
Q ss_pred cCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHH
Q 004860 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (727)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~ 277 (727)
++ +.+..+++||+||.++++++|+.|+++ +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 80 ~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~ 157 (625)
T TIGR02188 80 GD--EPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRIN 157 (625)
T ss_pred cC--CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHH
Confidence 54 123456899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEEeecccccCCccccchHHHhhh---CC---CcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCc
Q 004860 278 VSKAKGIFTQDFILRGGRKFPLYSKVLGA---AP---LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351 (727)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~---~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (727)
+++++++|+++...++++.++....+.+. .+ ..++++......... .......|++++..... .....
T Consensus 158 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~ 231 (625)
T TIGR02188 158 DAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPW-VEGRDVWWHDLMAKASA-----YCEPE 231 (625)
T ss_pred hcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCc-cccccccHHHHHhhcCC-----CCCce
Confidence 99999999998877666665554443322 22 123333322211110 01123456666544221 12233
Q ss_pred cCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHH-HhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEEEec
Q 004860 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT-AEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQ 429 (727)
Q Consensus 352 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~ 429 (727)
...+++++||+|||||||+||||+++|++++... ......++++++|++++.++++|..+. +.++.+|+.|+++++++
T Consensus 232 ~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~ 311 (625)
T TIGR02188 232 PMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFE 311 (625)
T ss_pred ecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEEC
Confidence 4567999999999999999999999999976543 334446789999999999999999886 56889999999999987
Q ss_pred CC---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCC--CCcccc
Q 004860 430 GS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIE 502 (727)
Q Consensus 430 ~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~--~~~l~n 502 (727)
+. +++..+++.|+++++|++.++|++++.|.+... ....++++||.+++|||++++++.+++.+.++ +++++|
T Consensus 312 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~ 391 (625)
T TIGR02188 312 GTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVD 391 (625)
T ss_pred CCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEe
Confidence 53 367899999999999999999999999987643 23456899999999999999999999888765 378999
Q ss_pred cccccccccccccCCCC-CCccccccccCCCCceEEEECCCCCcCC-CCCCeeeeEEEecccCCCCccccccc-cccc-c
Q 004860 503 SCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYP-DDQPCVGEVGLFPLYLGASDRLLNAD-HEEV-Y 578 (727)
Q Consensus 503 ~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p-~G~~giGel~v~~~y~~~~~~~~~~~-~~~~-~ 578 (727)
.||+||+++.++..... .+...+++|+|++|++++|+|++|++++ .|+. |||++...+.+...+|+++. .+.. +
T Consensus 392 ~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~--GeL~v~~p~p~~~~gy~~~~~~~~~~~ 469 (625)
T TIGR02188 392 TWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEG--GYLVIKQPWPGMLRTIYGDHERFVDTY 469 (625)
T ss_pred cccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCCe--EEEEEccCCCcccccccCChHHHHHHH
Confidence 99999998765443322 2345678999999999999999999999 8885 99999543322222333332 2222 2
Q ss_pred ccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEE
Q 004860 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (727)
Q Consensus 579 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a 658 (727)
|.. .+| ||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.+++
T Consensus 470 ~~~---~~g--~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~~~~~g-~~~~a 542 (625)
T TIGR02188 470 FSP---FPG--YYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALV-SHPAVAEAAVVGIPDDIKG-QAIYA 542 (625)
T ss_pred hcc---CCC--EEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEEEE
Confidence 221 123 9999999999999999999999999999999999999999996 8999999999999998888 99999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 659 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 659 ~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
||+++++...+ +++.+.|+++++++|++|++|+.|+++++||+|+|||++|+.|++++.+.
T Consensus 543 ~vv~~~~~~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~ 603 (625)
T TIGR02188 543 FVTLKDGYEPD-DELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE 603 (625)
T ss_pred EEEeCCCCCCC-HHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence 99998876544 45677788899999999999999999999999999999999999998765
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-79 Score=700.20 Aligned_cols=606 Identities=26% Similarity=0.378 Sum_probs=478.9
Q ss_pred CccccCChhhhcccchHHHHHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCCCC
Q 004860 83 PLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSK 162 (727)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 162 (727)
+.+|.|.......+++..+.+..+.. |...+.+|+.+++++++++..||..+++...+.|..++.++++... .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~--~ 76 (652)
T TIGR01217 4 QPLWQPDAQRIAQARMTRFQAWAGEH-----HGAAEGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPCARVVDDRT--M 76 (652)
T ss_pred CCCCCCChhhcccchHHHHHHHHHHh-----hCCChhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCCceeeeCCC--C
Confidence 45788877666677776665444322 3334467899999999999999999999877899999999986522 3
Q ss_pred CCCCcCCCCcccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcC
Q 004860 163 HGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMP 241 (727)
Q Consensus 163 ~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~ 241 (727)
...+||.++..|.++++++. .++++|+++.+. .+..+++||+||.++++++|+.|+++ +++||+|+|+++
T Consensus 77 ~~~~wf~~~~~n~~~~~~~~------~~~~~a~~~~~~---~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~ 147 (652)
T TIGR01217 77 PGAQWFPGARLNYAENLLRA------AGTEPALLYVDE---THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLP 147 (652)
T ss_pred CCCEECCCCeeeHHHHHhcc------CCCCeEEEEECC---CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence 45789999999999999873 358999999754 23456899999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhh---hCC--CcEEEEcC
Q 004860 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP--LKAIVLPA 316 (727)
Q Consensus 242 ~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~--~~~~v~~~ 316 (727)
|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...++++..+....+.+ .++ ..++++..
T Consensus 148 n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~ 227 (652)
T TIGR01217 148 NIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPY 227 (652)
T ss_pred CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999887777766655554433 222 22344432
Q ss_pred CCCCC-CCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHH-HHHHhhchhcCC
Q 004860 317 IGNDV-GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RCTAEGWAHIDL 394 (727)
Q Consensus 317 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~-~~~~~~~~~~~~ 394 (727)
..... ......+..+|+++...... .........++++++|+|||||||.||||+++|++++ +........+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~ 303 (652)
T TIGR01217 228 LGPRETEAPKIDGALDLEDFTAAAQA----AELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDL 303 (652)
T ss_pred CCCcccccccccCcccHHHHHhcccC----CCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCC
Confidence 21100 00001234567777544211 1112233456899999999999999999999999965 445555556889
Q ss_pred CCCCEEEEecccccccchHHhHHhhhcCcEEEEecCC---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCC
Q 004860 395 KVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLD 469 (727)
Q Consensus 395 ~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~ 469 (727)
+++|+++++++++|+++.+ ++.+|+.|++++++++. +++..++++|+++++|++.++|++++.+..... ....+
T Consensus 304 ~~~d~~~~~~~~~~~~~~~-~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~ 382 (652)
T TIGR01217 304 GPGDRLFYYTTTGWMMWNW-LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHD 382 (652)
T ss_pred CCCcEEEEeCCcchhhhHH-HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCC
Confidence 9999999999999986544 56899999999999753 367789999999999999999998888765421 23567
Q ss_pred ccceeEEEeecCCCChhhHHHHHhhCC-CCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCC
Q 004860 470 WTKIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPD 548 (727)
Q Consensus 470 l~~Lr~i~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~ 548 (727)
+++||.+++|||+++++..+++.+.++ +..+.+.||+||++.++....+..+...+++|.|.+|++++|+|++|++++
T Consensus 383 l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~~- 461 (652)
T TIGR01217 383 LSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPVT- 461 (652)
T ss_pred hhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCCCCC-
Confidence 899999999999999999998887664 346789999999865444333334445678899999999999999999995
Q ss_pred CCCeeeeEEEecccCCCCcccccccc-c---cccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeech
Q 004860 549 DQPCVGEVGLFPLYLGASDRLLNADH-E---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624 (727)
Q Consensus 549 G~~giGel~v~~~y~~~~~~~~~~~~-~---~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~ 624 (727)
|+. |||++...+.+.+.+|+++.. + +.+|... +| ||+|||+|++|+||+++|+||+||+||++|+||+|
T Consensus 462 g~~--GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~---~g--~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p 534 (652)
T TIGR01217 462 GEV--GELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTY---PG--VWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGS 534 (652)
T ss_pred CCc--cEEEEecCCCccccceeCCCccchhHHhhhcCC---CC--EEEcCCcEEECCCCcEEEEecccCeEecCCEEcCH
Confidence 775 999994332222223333322 2 1233321 23 88999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCC
Q 004860 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA 704 (727)
Q Consensus 625 ~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 704 (727)
.|||++|. +||+|.+|+|++++++..+ +.+++||+++++...+ +++.+.|+++++++|++|++|+.|+++++||+|+
T Consensus 535 ~EIE~~l~-~~p~V~eaavvg~~~~~~g-e~~~afVv~~~~~~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~ 611 (652)
T TIGR01217 535 AEIYNAVE-RLDEVRESLCIGQEQPDGG-YRVVLFVHLAPGATLD-DALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTL 611 (652)
T ss_pred HHHHHHHH-hCCCcceEEEEeeecCCCC-EEEEEEEEECCCCCCC-HHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCC
Confidence 99999996 9999999999999998888 9999999998876554 5677788889999999999999999999999999
Q ss_pred CchhhHHHHHHHHhhh
Q 004860 705 SNKLLRRVLRDQIKHE 720 (727)
Q Consensus 705 ~GKvdR~~L~~~~~~~ 720 (727)
||||+|+.|++++.+.
T Consensus 612 sGKi~r~~Lr~~~~~~ 627 (652)
T TIGR01217 612 TGKRVEVAVKRVLQGT 627 (652)
T ss_pred CccChHHHHHHHHcCC
Confidence 9999999999998543
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-82 Score=786.91 Aligned_cols=638 Identities=19% Similarity=0.184 Sum_probs=497.4
Q ss_pred HHHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCC---Ccccc
Q 004860 12 DLMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP---PLYWF 87 (727)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~---~~~~~ 87 (727)
|++-+++......+|.+.++++.+. .++++||+|||++ |++.++..+ ...|+ |+++|++++..... .....
T Consensus 295 ntlplr~~~~~~~tf~~~l~~~~~~~~~~~~h~~~p~~~-i~~~l~~~~--~~~~l--f~~~~~~~~~~~~~~~~~~~~~ 369 (1296)
T PRK10252 295 NVLPLRVHIAAQETLPELATRLAAQLKKMRRHQRYDAEQ-IVRDSGRAA--GDEPL--FGPVLNIKVFDYQLDFPGVQAQ 369 (1296)
T ss_pred ceEEEEEecCCCCCHHHHHHHHHHHHHHHHhhcCCCHHH-HHHHhcCcc--CCCCc--eeEEEEeeecccccCcCCccce
Confidence 4556677767777888888888877 9999999999999 999997432 34455 77887776533211 10000
Q ss_pred -CChhhhcccchHHHHH-HhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeee--ecCCCCCC
Q 004860 88 -PSLDQSKLTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSK 162 (727)
Q Consensus 88 -~~~~~~~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~ 162 (727)
........+|+++.+. ..++++...+ |++ ++|++.+++++.++|..+|+++...++.+...+ +...+...
T Consensus 370 ~~~~~~~~~~dl~l~~~~~~~~~l~~~~~y~~-----~~f~~~~i~~l~~~~~~ll~~~~~~p~~~i~~~~~~~~~~~~~ 444 (1296)
T PRK10252 370 THTLATGPVNDLELALFPDEHGGLSIEILANP-----QRYDEATLIAHAERLKALIAQFAADPALLCGDVDILLPGEYAQ 444 (1296)
T ss_pred eeecCCCccCCeEEEEEECCCCcEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCCCCChhhcCCCCHHHHHH
Confidence 0001112346666654 2345666677 888 999999999999999999999988777766553 22222111
Q ss_pred CCCCcCCCCcccHhhhhccC--CCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEE
Q 004860 163 HGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239 (727)
Q Consensus 163 ~~~~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~ 239 (727)
+..|+........ .++.. ..+++++||++|+++.+. .+||+||+++++++|+.|.+. +++||+|+|+
T Consensus 445 -~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~ 514 (1296)
T PRK10252 445 -LAQVNATAVEIPE-TTLSALVAQQAAKTPDAPALADARY--------QFSYREMREQVVALANLLRERGVKPGDSVAVA 514 (1296)
T ss_pred -HHHhcCCCCCCCc-CCHHHHHHHHHHhCCCCeEEEcCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 3344433322211 11211 224578999999999877 899999999999999999999 9999999999
Q ss_pred cCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCC
Q 004860 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN 319 (727)
Q Consensus 240 ~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 319 (727)
++|++++++++|||+++|++|+|+||++|.+++.+++++++++++|+++......... +. ..++
T Consensus 515 ~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----------~~-~~~~----- 578 (1296)
T PRK10252 515 LPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV----------PD-LTSL----- 578 (1296)
T ss_pred eCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC----------CC-ceee-----
Confidence 9999999999999999999999999999999999999999999999987532111100 00 0000
Q ss_pred CCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCE
Q 004860 320 DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV 399 (727)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~ 399 (727)
.+........ ..+.....+++++||+|||||||+||||+++|+++++.+.+....++++++|+
T Consensus 579 -----------~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~ 641 (1296)
T PRK10252 579 -----------CYNAPLAPQG------AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDV 641 (1296)
T ss_pred -----------eccccccccc------CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCE
Confidence 0000000000 01111235789999999999999999999999999999999999999999999
Q ss_pred EEEecccccccchHHhHHhhhcCcEEEEecC--CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCC--CCCccceeE
Q 004860 400 YCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRS 475 (727)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~Lr~ 475 (727)
+++.+|++|+.+++++|.+|++|+++++.+. ..++..++++|+++++|++.++|++++.+++..... ...+++||.
T Consensus 642 ~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~ 721 (1296)
T PRK10252 642 VLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQ 721 (1296)
T ss_pred EEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccE
Confidence 9999999999999999999999999999764 347888999999999999999999999988753222 234679999
Q ss_pred EEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCC------CccccccccCCCCceEEEECCCCCcCCCC
Q 004860 476 FASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ------PQAFGAFSTATMTAGLVILDECGVPYPDD 549 (727)
Q Consensus 476 i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~------~~~~~~iG~p~~~~~~~vld~~~~~~p~G 549 (727)
+++|||++++++.+.+.+.+ +++++|.||+||+++.++...... .....++|+|++|++++|+|++++++|.|
T Consensus 722 i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g 800 (1296)
T PRK10252 722 VFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPG 800 (1296)
T ss_pred EEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCC
Confidence 99999999999988887654 678999999999987655433211 22346899999999999999999999999
Q ss_pred CCeeeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeech
Q 004860 550 QPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624 (727)
Q Consensus 550 ~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~ 624 (727)
+. |||+| +.||+++ ++.|++.|..+|+.+|.+||+|||+|++++||+++|+||+|+|||++|+||+|
T Consensus 801 ~~--Gel~i~g~~~~~GY~~~------~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~ 872 (1296)
T PRK10252 801 VA--GDLYLTGIQLAQGYLGR------PDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIEL 872 (1296)
T ss_pred Cc--eEEEecccccchhhCCC------cccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecH
Confidence 96 99988 4577764 45788899999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCceeeEEEeec----CCCCC-ceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCC
Q 004860 625 VEIERVCDQADESILETAAISVS----PAGGG-PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPE 699 (727)
Q Consensus 625 ~eIE~~l~~~~p~V~~a~vv~~~----~~~~~-~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~ 699 (727)
.|||++|. .||+|.+++|++.. +...+ ...+++||+...+...+.++++ ++++++||+||+|..++.+++
T Consensus 873 ~eIE~~l~-~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~----~~l~~~Lp~~~~P~~~~~~~~ 947 (1296)
T PRK10252 873 GEIDRAMQ-ALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQ----AQLRERLPPHMVPVVLLQLDQ 947 (1296)
T ss_pred HHHHHHHH-hCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCCHHHHH----HHHHhhCchhcCCcEEEEecC
Confidence 99999996 89999999877652 11122 1479999998876555545544 457789999999999999999
Q ss_pred CCCCCCchhhHHHHHHH
Q 004860 700 FPRTASNKLLRRVLRDQ 716 (727)
Q Consensus 700 lP~t~~GKvdR~~L~~~ 716 (727)
||+|+||||||++|++.
T Consensus 948 lP~t~~GKidr~~L~~~ 964 (1296)
T PRK10252 948 LPLSANGKLDRKALPLP 964 (1296)
T ss_pred CCCCCCcChhHHhcCCC
Confidence 99999999999999764
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=653.33 Aligned_cols=588 Identities=32% Similarity=0.457 Sum_probs=497.3
Q ss_pred cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCCCCCCCCcCCCCcccHhhhhccCCCCCCCCCCce
Q 004860 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTV 193 (727)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~ 193 (727)
|.....+|..|++.+++.++.||..+++.+....... .............+|+.+...|.+++|++++.... .+|++
T Consensus 6 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~w~~g~~ln~~~n~~~~~~~~~-~~~~~ 82 (626)
T KOG1175|consen 6 YKNSLSSYREFYRFSVEDPERFWGEVAKELHWKFPWP--RCNKDENKGNPFTKWFPGAFLNACYNCLDRHIKEK-GGDKV 82 (626)
T ss_pred cCCCHHHHHHHHhhcccCHHHHHHHhhhhhhcccCcc--ccccccccCCCCccccccchhhhhHhhhhhhhhhc-CCCCc
Confidence 5566678899999999999999999999864322222 22222223456789999999999999999976445 79999
Q ss_pred EEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHH
Q 004860 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (727)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l 272 (727)
|+++.+..+ +....+||.||.+++.++|..|.+. +++||+|++++|+.+++++++|||.++|++.+++...+++..+
T Consensus 83 a~~~~~~~~--~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l 160 (626)
T KOG1175|consen 83 AIIFEGNEG--GDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKEL 160 (626)
T ss_pred EEEEEecCC--CceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHH
Confidence 999986632 2333499999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCcc
Q 004860 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (727)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (727)
..+++++++++|+|.+...+..+.++......+.+.....+........-......+.+|++.+..... ..++..
T Consensus 161 ~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~-----~~~~~~ 235 (626)
T KOG1175|consen 161 LDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKASP-----EHPCVP 235 (626)
T ss_pred HHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcCC-----CCCcee
Confidence 999999999999999999999999988877776654322111111110111112236678887666543 233677
Q ss_pred CCCCCeEEEEeCCCCCCCCCeEEecChH-HHHHHHhhchhcCCCCCCEEEEecccccccchHH-hHHhhhcCcEEEEecC
Q 004860 353 NPVDAVVNILFSSGTTGEPKAIPWTQLS-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG 430 (727)
Q Consensus 353 ~~~~~~a~ii~TSGSTG~PKgV~~th~~-l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~~G~~lv~~~~ 430 (727)
.+.+|+.+|+|||||||.|||+.+++.+ ++..+......++++++|++++++.++|+.+.+. .+++|++|+|++++++
T Consensus 236 ~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g 315 (626)
T KOG1175|consen 236 VKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEG 315 (626)
T ss_pred cCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcC
Confidence 7889999999999999999999999987 5667777778899999999999999999999854 7889999999999988
Q ss_pred CC-ChhhHHHHHHHhCCCEEEechHHHHHHHhcCCC--CCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccccccc
Q 004860 431 SP-LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (727)
Q Consensus 431 ~~-~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (727)
.+ ++..+++.+.+++||++++.|++++.|.+.... ...++++||.+.++||++.++..+|+.+.+...+|++.||+|
T Consensus 316 ~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qt 395 (626)
T KOG1175|consen 316 PPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQT 395 (626)
T ss_pred CCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeee
Confidence 77 889999999999999999999999988776443 334456899999999999999999999988655799999999
Q ss_pred ccccccccCCCCC-CccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccC-CCCcccccccc--ccccccccc
Q 004860 508 ELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYL-GASDRLLNADH--EEVYFRGMP 583 (727)
Q Consensus 508 E~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~-~~~~~~~~~~~--~~~~f~~~p 583 (727)
|+|..++.+.... +..++++|.|.+++.+.|+|++|++++.+. |.|+|++.+..+ +.+..++++.. .+.||.+.|
T Consensus 396 EtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~p 474 (626)
T KOG1175|consen 396 ETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFP 474 (626)
T ss_pred ccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccCC
Confidence 9999888877766 888999999999999999999999999875 569999976666 55555555433 334554443
Q ss_pred cCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEec
Q 004860 584 MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK 663 (727)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~ 663 (727)
.+|.|||.+++|+||+++++||.||+||++|+|+++.|||+++. .||.|.|++||+.+++..| +.++|||+++
T Consensus 475 -----g~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~-~hp~VaEsAvVg~p~~~~g-e~v~aFvvl~ 547 (626)
T KOG1175|consen 475 -----GYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALV-EHPAVAESAVVGSPDPIKG-EVVLAFVVLK 547 (626)
T ss_pred -----ceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHh-hCcchhheeeecCCCCCCC-eEEEEEEEEc
Confidence 38999999999999999999999999999999999999999996 9999999999999999988 9999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 664 KGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 664 ~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
++ ..+.++|++.|++++++.+.+++.|+.|++++.||+|.|||+.|++|++++.++
T Consensus 548 ~g-~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 548 SG-SHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred CC-CCChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence 98 456699999999999999999999999999999999999999999999999876
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-81 Score=839.43 Aligned_cols=650 Identities=15% Similarity=0.153 Sum_probs=518.9
Q ss_pred HHHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCC-----Ccc
Q 004860 12 DLMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-----PLY 85 (727)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~-----~~~ 85 (727)
|++-+++..+...+|.++++++.++ +++++||++||++ |++.|+++|....+|+ ||+|+++++..... ...
T Consensus 2019 ntlPlrv~~~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~-iv~~l~~~r~~~~~pl--f~~~~~~~~~~~~~~~~~~~~~ 2095 (4334)
T PRK05691 2019 NTQVLRCQLDGQMSVSELLEQVRQTVIEGQSHQDLPFDH-LVEALQPPRSAAYNPL--FQVMCNVQRWEFQQSRQLAGMT 2095 (4334)
T ss_pred eeeeEEeecCCCCCHHHHHHHHHHHHHHHHhcccCCHHH-HHHHhccccccCCCCc--eEEEEEeeccccccccCCCCce
Confidence 4566788888888888888888888 9999999999999 9999999999889998 99999987643211 111
Q ss_pred --ccCChhhhcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeee--ecCCCC
Q 004860 86 --WFPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDK 160 (727)
Q Consensus 86 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~ 160 (727)
.........+|||.+.+.+.++++.+.+ |+. ++|++++++++.++|.++|+++...++.+...+ +...+.
T Consensus 2096 ~~~~~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 2170 (4334)
T PRK05691 2096 VEYLVNDARATKFDLNLEVTDLDGRLGCCLTYSR-----DLFDEPRIARMAEHWQNLLEALLGDPQQRLAELPLLAAAEQ 2170 (4334)
T ss_pred eEeecccCCccccceEEEEEecCCcEEEEEEECc-----ccCCHHHHHHHHHHHHHHHHHHHhhhcCChhhccCCcHHHH
Confidence 1122234578899888887777888888 998 999999999999999999999987777766553 333322
Q ss_pred CCCCCCcCCCCcccHhhhhccC--CCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEE
Q 004860 161 SKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237 (727)
Q Consensus 161 ~~~~~~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Va 237 (727)
......|+..........+++. ..+++++||++|+++.++ ++||+||+++++++|++|++. +++|++|+
T Consensus 2171 ~~l~~~~~~~~~~~~~~~~l~~~~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~~~~lA~~L~~~Gv~~g~~V~ 2242 (4334)
T PRK05691 2171 QQLLDSLAGEAGEARLDQTLHGLFAAQAARTPQAPALTFAGQ--------TLSYAELDARANRLARALRERGVGPQVRVG 2242 (4334)
T ss_pred HHHHHHhCCCCcCCCcccchHHHHHHHHHHCCCCeEEEeCCe--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 2222334433322222334443 335689999999999877 999999999999999999999 99999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCC
Q 004860 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAI 317 (727)
Q Consensus 238 i~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 317 (727)
++++|++++++++|||+|+|++||||||.+|.+++.+++++++++++|++..........+ . ....+.+...
T Consensus 2243 l~~~~s~~~vv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~------~--~~~~~~~~~~ 2314 (4334)
T PRK05691 2243 LALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEALGELP------A--GVARWCLEDD 2314 (4334)
T ss_pred EEeCCCHHHHHHHHHHHHhCcEeecCCCCChHHHHHHHHHhcCCCEEEeChhhhhhhcccc------c--cceeEEeccc
Confidence 9999999999999999999999999999999999999999999999999875321110000 0 0001111000
Q ss_pred CCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCC
Q 004860 318 GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG 397 (727)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 397 (727)
.... .... .........+++++||+|||||||+||||+++|+++++.+.+....++++++
T Consensus 2315 --------------~~~~-~~~~-----~~~~~~~~~~~~~a~ii~TSGSTG~PKGV~~~h~~l~~~~~~~~~~~~~~~~ 2374 (4334)
T PRK05691 2315 --------------AAAL-AAYS-----DAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRAD 2374 (4334)
T ss_pred --------------hhhh-hcCC-----CCCCCCCCCCCCcEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCcc
Confidence 0000 0000 0011122356899999999999999999999999999999888889999999
Q ss_pred CEEEEecccccccchHHhHHhhhcCcEEEEecC-CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEE
Q 004860 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476 (727)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i 476 (727)
|+++++++++|+.+++++|.+|++|+++++.+. ..++..++++|+++++|++.++|++++.|...... .....+||.+
T Consensus 2375 d~~l~~~~~~fd~~~~~i~~~L~~G~~lvl~~~~~~~~~~l~~~i~~~~vt~~~~tPs~~~~l~~~~~~-~~~~~~lr~i 2453 (4334)
T PRK05691 2375 DCELHFYSINFDAASERLLVPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAG-QGEQLPVRMC 2453 (4334)
T ss_pred cEEEEecCccHHHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHHhhhc-cccCCCceEE
Confidence 999999999999999999999999999999764 34788999999999999999999999999865422 2345689999
Q ss_pred EeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCC----CCccccccccCCCCceEEEECCCCCcCCCCCCe
Q 004860 477 ASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (727)
Q Consensus 477 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~g 552 (727)
++|||+++++..+++...++...++|.||+||++++.+.+... ......++|+|++++.++|+|++++++|.|++
T Consensus 2454 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~pi~~~~~~i~d~~~~~vp~G~~- 2532 (4334)
T PRK05691 2454 ITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLALVPQGAT- 2532 (4334)
T ss_pred EEccccCCHHHHHHHHHhCCCceEEeCcCCCcceEEEEEeecccccccCCCCCccccccCCCEEEEECCCCCCCCCCCc-
Confidence 9999999999999988887777899999999998654332211 11223579999999999999999999999996
Q ss_pred eeeEEE-----ecccCCCCccccccccccccccccccC-CCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHH
Q 004860 553 VGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626 (727)
Q Consensus 553 iGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~-~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~e 626 (727)
|||+| +.||+++ ++.|++.|..+|+. .|.|||+|||+|++++||+++|+||+|+|||++|+||+|+|
T Consensus 2533 -GEL~i~G~~v~~GY~~~------~~~t~~~F~~~p~~~~~~r~y~TGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~E 2605 (4334)
T PRK05691 2533 -GELYVGGAGLAQGYHDR------PGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGE 2605 (4334)
T ss_pred -eEEEecccccCccccCC------hhhhhhhccCCCCCCCCCceEeccceEEEcCCCCEEEeecccCeEEeeeEEechHH
Confidence 99988 5677764 45788899988875 47789999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCC--CChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCC
Q 004860 627 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT--SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA 704 (727)
Q Consensus 627 IE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~--~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 704 (727)
||++|. +||+|.+|+|++..++ .+ +.+++|++...... .....+.+.++++++++||+||+|..|+++++||+|+
T Consensus 2606 IE~~l~-~~p~V~~a~V~~~~~~-~~-~~lva~vv~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~v~~lP~t~ 2682 (4334)
T PRK05691 2606 IESRLL-EHPAVREAVVLALDTP-SG-KQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDYMVPAHLILLDSLPLTA 2682 (4334)
T ss_pred HHHHHH-hCCCcceEEEEEeeCC-CC-cEEEEEEEecccccccccccccHHHHHHHHHhhCccccCChhheeecccCCCC
Confidence 999995 9999999999988543 44 78999999754221 1123345667788999999999999999999999999
Q ss_pred CchhhHHHHHHHH
Q 004860 705 SNKLLRRVLRDQI 717 (727)
Q Consensus 705 ~GKvdR~~L~~~~ 717 (727)
|||+||++|++..
T Consensus 2683 ~GKidr~~L~~~~ 2695 (4334)
T PRK05691 2683 NGKLDRRALPAPD 2695 (4334)
T ss_pred CCcccHHhhcCcc
Confidence 9999999998653
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-77 Score=691.31 Aligned_cols=578 Identities=27% Similarity=0.409 Sum_probs=461.8
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCCCCCCCCcCCCCcccHhhhhccCCCCCCCCCCceEEEEe
Q 004860 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (727)
Q Consensus 119 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (727)
.+|..+.+++++++..||..+.+. ..|..++.++++. ..+..+||.++..|.++++++++. +++||++|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~---~~~~~~w~~~~~~n~~~~~l~~~~--~~~p~~~Al~~~ 89 (637)
T PRK00174 17 EQYKALYQESVEDPEGFWAEQAKR--LDWFKPFDTVLDW---NAPFIKWFEDGELNVSYNCLDRHL--KTRGDKVAIIWE 89 (637)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHh--cCeecCCcccccC---CCCCCccCCCCEeEHHHHHHHHhh--ccCCCCeEEEEE
Confidence 456888899999999999999877 4688888888764 346789999999999999998765 678999999986
Q ss_pred cCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHH
Q 004860 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (727)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~ 277 (727)
+.. .+..+++||+||+++++++|+.|+++ +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 90 ~~~--~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~ 167 (637)
T PRK00174 90 GDD--PGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRII 167 (637)
T ss_pred CCC--CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHH
Confidence 541 12346899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEEeecccccCCccccchHHHhhh---CCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCcc
Q 004860 278 VSKAKGIFTQDFILRGGRKFPLYSKVLGA---APL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (727)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~---~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (727)
+++++++|+++...+..+.++....+.+. .+. .++++......... .......|+++...... ..+...
T Consensus 168 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~ 241 (637)
T PRK00174 168 DAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDW-VEGRDLWWHELVAGASD-----ECEPEP 241 (637)
T ss_pred hcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCc-CCCCcccHHHHHhhcCC-----CCCccc
Confidence 99999999988766555554444433322 221 23333322111100 01123456666543211 122234
Q ss_pred CCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHH-hhchhcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEEEecC
Q 004860 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQG 430 (727)
Q Consensus 353 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~ 430 (727)
..+++++||+|||||||+||||+++|++++.... .....++++++|++++.++++|..+. +.++.+|++|++++++++
T Consensus 242 ~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~ 321 (637)
T PRK00174 242 MDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEG 321 (637)
T ss_pred cCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECC
Confidence 5678999999999999999999999999765443 34445788999999999999999887 568899999999999875
Q ss_pred C---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCC--CCCCccceeEEEeecCCCChhhHHHHHhhCC--CCccccc
Q 004860 431 S---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIES 503 (727)
Q Consensus 431 ~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~--~~~l~n~ 503 (727)
. +++..+++.|+++++|++.++|++++.|++.... ...++++||.+++|||+++++..+++.+.++ .++++|.
T Consensus 322 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~ 401 (637)
T PRK00174 322 VPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDT 401 (637)
T ss_pred CCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEec
Confidence 3 3678999999999999999999999999876432 3456889999999999999999988887764 3789999
Q ss_pred ccccccccccccCCCC-CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCcccccc-ccccccccc
Q 004860 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNA-DHEEVYFRG 581 (727)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~-~~~~~~f~~ 581 (727)
||+||++..++..... .....+++|+|++|++++|+|++|+++|.|+. |||+|...+.+...+|+++ +.+...|
T Consensus 402 YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~--Gel~v~g~~p~~~~gy~~~~~~~~~~~-- 477 (637)
T PRK00174 402 WWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEG--GNLVIKDPWPGMMRTIYGDHERFVKTY-- 477 (637)
T ss_pred ccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCCc--EEEEEcCCCCcccccccCCHHHHHHhh--
Confidence 9999998755433221 22345789999999999999999999999986 9999853211222223332 2222221
Q ss_pred cccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEE
Q 004860 582 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 661 (727)
Q Consensus 582 ~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv 661 (727)
+.....||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.+++||+
T Consensus 478 --~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~~~V~~~~Vvg~~~~~~g-~~~~a~vv 553 (637)
T PRK00174 478 --FSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKVAEAAVVGRPDDIKG-QGIYAFVT 553 (637)
T ss_pred --hcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEEEEEEE
Confidence 1112238999999999999999999999999999999999999999996 9999999999999998888 99999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 662 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 662 ~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
+.++...+ +.+.+.|++++++.|++|++|..|+++++||+|+|||++|+.|++++.+.
T Consensus 554 ~~~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 611 (637)
T PRK00174 554 LKGGEEPS-DELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE 611 (637)
T ss_pred ECCCCCCC-HHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 98765443 45666788889999999999999999999999999999999999987655
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-77 Score=689.19 Aligned_cols=577 Identities=21% Similarity=0.321 Sum_probs=462.3
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCCCCCCCCcCCCCcccHhhhhccCCCCCCCCCCceEEEEe
Q 004860 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (727)
Q Consensus 119 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (727)
.+|+.+++++++++..||..+++. ..|++++.++++.. ..+..+||.++..|.++++++++. +.+||++|+++.
T Consensus 2 ~~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~A~~~~ 75 (629)
T PRK10524 2 MSYSEFYQRSIDDPEAFWAEQARR--IDWQTPFTQVLDYS--NPPFARWFVGGRTNLCHNAVDRHL--AKRPEQLALIAV 75 (629)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHh--CCcccCchhhccCC--CCCcCccCCCcEeeHHHHHHHHhh--ccCCCCeEEEEE
Confidence 467889999999999999999996 47999999987542 245679999999999999998765 678999999985
Q ss_pred cCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHH
Q 004860 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (727)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~ 277 (727)
+. ..+..+++||+||.++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 76 ~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~ 153 (629)
T PRK10524 76 ST--ETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARID 153 (629)
T ss_pred cC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHH
Confidence 42 123346899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEEeecccccCCccccchHHHhhh---C---CCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCc
Q 004860 278 VSKAKGIFTQDFILRGGRKFPLYSKVLGA---A---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351 (727)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~---~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (727)
+++++++|+++...++++.++....+.+. . ...++++...... .........+|.++...... ...+..
T Consensus 154 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~ 228 (629)
T PRK10524 154 DAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAP-MARVAGRDVDYATLRAQHLG----ARVPVE 228 (629)
T ss_pred hcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCC-cCcccCCcccHHHHHhcCCC----CCCCce
Confidence 99999999988766666665544433321 1 2234444321110 01111233456665443221 111222
Q ss_pred cCCCCCeEEEEeCCCCCCCCCeEEecChHHHHH-HHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEEEec
Q 004860 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC-TAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQ 429 (727)
Q Consensus 352 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~ 429 (727)
...+++++||+|||||||.||||+++|++++.. .......+++.++|++++.++++|+++. +.++.+|+.|+++++++
T Consensus 229 ~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~ 308 (629)
T PRK10524 229 WLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYE 308 (629)
T ss_pred eeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEEC
Confidence 346789999999999999999999999997543 3334445788999999999999999886 66899999999999987
Q ss_pred CC---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 430 GS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 430 ~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
+. +++..++++|+++++|++.++|++++.|.+... ....++++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 309 g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~Y 387 (629)
T PRK10524 309 GLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNY 387 (629)
T ss_pred CCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEecc
Confidence 53 367889999999999999999999999887542 2345789999999999999999998888766 57899999
Q ss_pred cccccccccccCCC---CCCccccccccCCCCceEEEECC-CCCcCCCCCCeeeeEEEec----ccCCCCcccccc-ccc
Q 004860 505 GGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFP----LYLGASDRLLNA-DHE 575 (727)
Q Consensus 505 G~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~~----~y~~~~~~~~~~-~~~ 575 (727)
|+||++..++.... ......+++|+|++|++++|+|+ +|+++|.|+. |||++.. +++. .++++ +.+
T Consensus 388 G~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~--Gel~i~gp~~~~~~~---~~~~~~~~~ 462 (629)
T PRK10524 388 WQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEK--GVLVIEGPLPPGCMQ---TVWGDDDRF 462 (629)
T ss_pred ccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCc--EEEEEcCCCChhhcC---CccCChHHH
Confidence 99999843332222 12334578999999999999998 9999999986 9999943 3333 22222 222
Q ss_pred -cccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCce
Q 004860 576 -EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (727)
Q Consensus 576 -~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~ 654 (727)
+.+|... +.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+++|++.+++..| +
T Consensus 463 ~~~~~~~~----~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~d~~~g-~ 536 (629)
T PRK10524 463 VKTYWSLF----GRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESIS-SHPAVAEVAVVGVKDALKG-Q 536 (629)
T ss_pred HHhhhccC----CCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHH-hCCCcceEEEEccccCCCC-e
Confidence 2233211 3359999999999999999999999999999999999999999996 9999999999999998887 8
Q ss_pred EEEEEEEecCCCCCC----hHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 655 VLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 655 ~l~a~vv~~~~~~~~----~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
.+++||+++++...+ .+.+.+.|+++++++|++|++|..|+++++||+|+|||++|+.|++++.+.
T Consensus 537 ~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 606 (629)
T PRK10524 537 VAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEGR 606 (629)
T ss_pred EEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence 999999998754322 246777889999999999999999999999999999999999999987654
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-76 Score=634.86 Aligned_cols=497 Identities=27% Similarity=0.298 Sum_probs=418.8
Q ss_pred CCCCc-eEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh---cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 188 KEDNT-VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM---FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 188 ~~pd~-~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~---v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
..+++ +++++.... .+.+||+|+..++.++|.+|.++ +++||+|+|++||+++++++++||+.+|+++.|+
T Consensus 28 ~~~~~~~~~i~~~~~-----g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~ 102 (537)
T KOG1176|consen 28 VYLDRNTSLVYQDSD-----GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPL 102 (537)
T ss_pred ccccCcceEEEecCC-----CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcccccc
Confidence 44444 788877620 13999999999999999999975 7889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCccc-HHHHhcccCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLS-WKDFLSSVDYH 342 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 342 (727)
+|.+.+.++.+.++++++++++++.... +........+..+++++................+ +..+......
T Consensus 103 Np~~~~~ei~~~~~~s~~kiif~d~~~~------~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 175 (537)
T KOG1176|consen 103 NPRLTASEIAKQLKDSKPKLIFVDEDFY------DKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLP- 175 (537)
T ss_pred CcccCHHHHHHHHHhcCCeEEEEcCchH------HHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCC-
Confidence 9999999999999999999999998543 3333333333455555543311111111111112 3333222211
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcC
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (727)
.. ......+|++.++|||||||.||||++||++++...........++..|+.++.+|+.|..|++.++.+++.|
T Consensus 176 ----~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~ 250 (537)
T KOG1176|consen 176 ----DG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAG 250 (537)
T ss_pred ----cc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhC
Confidence 11 3455679999999999999999999999999988877666667778899999999999999999888877777
Q ss_pred cEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccc
Q 004860 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (727)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (727)
++.++....+++..+++.|++|++|+++++|.++..|++.+.....+++++|.+.+||++++++..+.+.++++...+.+
T Consensus 251 ~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q 330 (537)
T KOG1176|consen 251 GTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQ 330 (537)
T ss_pred CceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEE
Confidence 77777776779999999999999999999999999999987777789999999999999999999999999998789999
Q ss_pred cccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccc
Q 004860 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (727)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~ 577 (727)
.||+||+++..+.+........+++|+++++.+..|.++.|+.+++++. ||||+ ..||++ |++.|++
T Consensus 331 ~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~~~--GEI~vrg~~imkGY~~------NpeaT~~ 402 (537)
T KOG1176|consen 331 GYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPNQT--GEICVRGPQVMKGYLK------NPEATKE 402 (537)
T ss_pred eeccccccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCCCCc--eEEEEECcccchhhcC------ChHHHHh
Confidence 9999999976666555443578899999999999999999999999996 99999 467776 5557777
Q ss_pred cccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
.|.++ .||+|||+|++|+||+|++.+|++|+||.+|++|+|.|||++|. .||.|.||+|++++|+..| +.++
T Consensus 403 ~~~~~------GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~-~hP~V~eaaVvgipDe~~G-e~p~ 474 (537)
T KOG1176|consen 403 AFDDD------GWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLL-THPDVLEAAVVGIPDEVWG-ETPA 474 (537)
T ss_pred hcccC------CccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHH-hCCCccEEEEEcccccccC-Ccce
Confidence 77653 29999999999999999999999999999999999999999996 9999999999999999999 9999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhh
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 721 (727)
||||.++|...++++++++ ++++|++|++|..++|+++||+|+||||.|+.|++++.+..
T Consensus 475 A~VV~k~g~~lte~di~~~----v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~~ 534 (537)
T KOG1176|consen 475 AFVVLKKGSTLTEKDIIEY----VRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKLG 534 (537)
T ss_pred EEEEecCCCcCCHHHHHHH----HHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhcc
Confidence 9999999888888888776 66788889999999999999999999999999999997654
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-73 Score=570.65 Aligned_cols=504 Identities=20% Similarity=0.235 Sum_probs=422.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
+++-||+.|+++..++ .++||+|+.+.++++|..|.++ +++||||+|..||+.+|+.++|||.++|.+.++++
T Consensus 60 t~~v~dkea~Vf~~eg------~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~N 133 (596)
T KOG1177|consen 60 TERVPDKEAAVFDHEG------IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLN 133 (596)
T ss_pred hhccCcceEEEEeecc------chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEeccC
Confidence 4678999999987653 3799999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhh----------------CCCcEEEEcCCCCCCCCCCCcC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA----------------APLKAIVLPAIGNDVGIPLREQ 328 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~~~~ 328 (727)
|.|+.+++++.|+..+++++++...+. .-.....+.+. ++....++-.+.. ..-.+
T Consensus 134 P~Yq~~elr~~L~k~~~k~l~~p~~~k----~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed----~~~~G 205 (596)
T KOG1177|consen 134 PAYQSEELRYVLKKVGCKALFAPPQFK----TQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED----HPLPG 205 (596)
T ss_pred cccccHHHHHHHhhcCeEEEEccchhh----hchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC----CcCCC
Confidence 999999999999999999999987532 11111222211 2222333322211 11245
Q ss_pred cccHHHHhcccCCCCC-CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccc
Q 004860 329 DLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG 407 (727)
Q Consensus 329 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 407 (727)
...+++++...+.... ..........||+++.|.|||||||.|||+.+||-|++|+......++++...+++++..|+.
T Consensus 206 a~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~ 285 (596)
T KOG1177|consen 206 AFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLY 285 (596)
T ss_pred ceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchH
Confidence 6677887776654111 111122346789999999999999999999999999999999999999999999999999999
Q ss_pred cccch-HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChh
Q 004860 408 WVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (727)
Q Consensus 408 ~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~ 486 (727)
|.++. ..++.+|+.|+|+|++...+++...++.|.++++|.++.+|+++..|++.+.....+++++|.++.||+++|++
T Consensus 286 H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s~e 365 (596)
T KOG1177|consen 286 HCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVSPE 365 (596)
T ss_pred HHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCCHH
Confidence 99995 67899999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred hHHHHHhhCCCCcccccccccccccccccCCCCC--CccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----e
Q 004860 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----F 559 (727)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~ 559 (727)
+.+.+.....-..+...||+||++...+.....+ .....++|..+++.+..|+|.+|.++|.|++ |||++ +
T Consensus 366 Llk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~--Gel~iRGY~tM 443 (596)
T KOG1177|consen 366 LLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLGTK--GELLIRGYSTM 443 (596)
T ss_pred HHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCCCccccCCC--ceEEEEechhh
Confidence 9888776543224788999999997655544433 2345689999999999999999999999998 99998 4
Q ss_pred cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCce
Q 004860 560 PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 639 (727)
Q Consensus 560 ~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~ 639 (727)
.+|++.. +.|++.. ..+|||+|||+|++|++|+++++||.+|+|+.+|++|+|.|||+.|. +||.|.
T Consensus 444 l~Ywg~~------~kT~eti------~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~-~hp~V~ 510 (596)
T KOG1177|consen 444 LGYWGEE------EKTKETI------GNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLN-KHPLVK 510 (596)
T ss_pred eeecCCc------ccchhhc------ccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHh-hCCCee
Confidence 5666632 2333322 24679999999999999999999999999999999999999999996 999999
Q ss_pred eeEEEeecCCCCCceEEEEEEEecCCCC--CChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHH
Q 004860 640 ETAAISVSPAGGGPEVLVIFVVLKKGFT--SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI 717 (727)
Q Consensus 640 ~a~vv~~~~~~~~~~~l~a~vv~~~~~~--~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~ 717 (727)
++.||+++|+..| +.+||+|-++.+.. .+.++|+++ ++.+|..|.+|+.|++++++|+|-+|||.|-++++++
T Consensus 511 ~a~VVGV~D~R~G-E~VCA~vRLqe~~e~~~t~E~lKa~----Ck~klaHFKiPky~vf~~~FPlT~tGKIqKFeir~~~ 585 (596)
T KOG1177|consen 511 EAHVVGVPDERLG-EEVCACVRLQEGAEGKTTAETLKAM----CKGKLAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMS 585 (596)
T ss_pred eEEEEccCCCccc-ceEEEEEEeeccccccccHHHHHHH----HhcccccccCCcEEEEeccCcccccccchhHHHHHHH
Confidence 9999999999999 99999999998765 355555554 6677999999999999999999999999999999999
Q ss_pred hhhhcc
Q 004860 718 KHELSV 723 (727)
Q Consensus 718 ~~~~~~ 723 (727)
+.+++-
T Consensus 586 k~~l~l 591 (596)
T KOG1177|consen 586 KGHLGL 591 (596)
T ss_pred Hhhcce
Confidence 987764
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-71 Score=620.56 Aligned_cols=488 Identities=71% Similarity=1.165 Sum_probs=380.2
Q ss_pred cCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCC
Q 004860 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN 319 (727)
Q Consensus 240 ~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 319 (727)
++|++++++++|||+++|++++|+++.++.+++.++|++++++++|+++......+..+....+........+++...+.
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 58999999999999999999999999999999999999999999999875422222223333332222223333322111
Q ss_pred CCCCCCCcCcccHHHHhcccCCCC--CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCC
Q 004860 320 DVGIPLREQDLSWKDFLSSVDYHP--RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG 397 (727)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 397 (727)
...........+|++++....... ...........++++++|+|||||||.||||++||++++.........++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 160 (499)
T PLN03051 81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG 160 (499)
T ss_pred ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence 000000112345666653211100 000111122356899999999999999999999999987766555566788999
Q ss_pred CEEEEecccccccchHHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeE
Q 004860 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS 475 (727)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~ 475 (727)
|++++.+|++|+.+.+.++.+|+.|+++++.++..++..+++.|+++++|++.++|+++..|++... ....++++||.
T Consensus 161 d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~ 240 (499)
T PLN03051 161 DVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240 (499)
T ss_pred CEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheE
Confidence 9999999999999988888999999999998765677899999999999999999999999987542 33457889999
Q ss_pred EEeecCCCChhhHHHHHhhCC-CCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeee
Q 004860 476 FASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG 554 (727)
Q Consensus 476 i~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giG 554 (727)
+++|||+++++..+++.+..+ +++++|.||+||++..++......+...+++|+|.++++++|+|++|+++|.|+..+|
T Consensus 241 i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~G 320 (499)
T PLN03051 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVG 320 (499)
T ss_pred EEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCCCCcce
Confidence 999999999988877766322 3689999999998754333222223345789999999999999999999999852259
Q ss_pred eEEEecccCCCCccccccccccccccccccC--CCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHh
Q 004860 555 EVGLFPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (727)
Q Consensus 555 el~v~~~y~~~~~~~~~~~~~~~~f~~~p~~--~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (727)
||++..++++.+.+|++++.++.+|.++|+. ++.+||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.
T Consensus 321 el~v~g~~~~~~~gy~~~~~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~ 400 (499)
T PLN03051 321 EVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACD 400 (499)
T ss_pred EEEEecCcCCCCccccCCcccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHH
Confidence 9999665555444555655455555555543 56779999999999999999999999999999999999999999995
Q ss_pred hcCCCceeeEEEeecCCCCCceEEEEEE---EecCCC-CCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchh
Q 004860 633 QADESILETAAISVSPAGGGPEVLVIFV---VLKKGF-TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL 708 (727)
Q Consensus 633 ~~~p~V~~a~vv~~~~~~~~~~~l~a~v---v~~~~~-~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKv 708 (727)
+.||+|.+|+|++++++..|.+.+++|| +++++. ..+.++++++++++++++|++|++|..|+++++||+|+||||
T Consensus 401 ~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~v~~lP~t~~GKi 480 (499)
T PLN03051 401 RAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNASNKL 480 (499)
T ss_pred hcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEEEcCCCCCCCCccH
Confidence 2399999999999999887756899999 777664 466789999999999999999888888999999999999999
Q ss_pred hHHHHHHHHhhhhcccCCC
Q 004860 709 LRRVLRDQIKHELSVRSRI 727 (727)
Q Consensus 709 dR~~L~~~~~~~~~~~~~~ 727 (727)
+|++|++.+.+.+.-+||+
T Consensus 481 ~r~~L~~~~~~~~~~~~~~ 499 (499)
T PLN03051 481 LRRVLRDQLKKELSGRSKL 499 (499)
T ss_pred HHHHHHHHHHHhhccccCC
Confidence 9999999999988888775
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-70 Score=618.04 Aligned_cols=491 Identities=25% Similarity=0.281 Sum_probs=403.6
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
+..+|+++|+++.+..+ ++||+||+++++++|+.|++. |++||+|+|+++|+++++++++||+++|++++|++
T Consensus 21 a~~~~~~~a~~~~~~~~------~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpln 94 (534)
T COG0318 21 ARRNPDRPALIFLGRGG------RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLN 94 (534)
T ss_pred HHhCCCceEEEEcCCCc------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeecC
Confidence 36899999999988721 399999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCc-ccHHHHhcccCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD-LSWKDFLSSVDYHP 343 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 343 (727)
|.+..+++.+++++++++++++++.+. +....+....+....+........ .. .++.+.......
T Consensus 95 ~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-- 160 (534)
T COG0318 95 PRLTPRELAYILNDAGAKVLITSAEFA------ALLEAVAEALPVVLVVLLVGDADD------RLPITLEALAAEGPG-- 160 (534)
T ss_pred cccCHHHHHHHHHhcCCeEEEEcccch------hHHHHHhccCCcceEEEecccccc------cccccHHHHhhccCC--
Confidence 999999999999999999999997522 122222222221111211111000 00 245555332211
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcC--CCCCCEEEEecccccccchHHh-HHhhh
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPVIL-FSSFL 420 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~~~-~~~l~ 420 (727)
.........++++++++|||||||.||||++||+|++.+.......++ +++.|++++.+|++|++++... +.+++
T Consensus 161 --~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~ 238 (534)
T COG0318 161 --PDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLL 238 (534)
T ss_pred --cccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHH
Confidence 011111267899999999999999999999999999988888878888 8999999999999999999754 45589
Q ss_pred cCcEEEEecC-CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccc-eeEEEeecCCCChhhHHHHHhhCCCC
Q 004860 421 NGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-IRSFASTGETSNVDDDLWLSSKAWYN 498 (727)
Q Consensus 421 ~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~-Lr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (727)
.|+++++.++ .+++..++..+.++++|++.++|+++..|+........++++ ||.+++||++++++..+.+.++++..
T Consensus 239 ~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~ 318 (534)
T COG0318 239 GGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPI 318 (534)
T ss_pred cCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCC
Confidence 9999999875 578889999999999999999999999999887766666665 99999999999999999999888766
Q ss_pred cccccccccccccccccCCCCC-CccccccccCCCCceEEEECCCCC-cCCCCCCeeeeEEE-----ecccCCCCccccc
Q 004860 499 AIIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGV-PYPDDQPCVGEVGL-----FPLYLGASDRLLN 571 (727)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~vld~~~~-~~p~G~~giGel~v-----~~~y~~~~~~~~~ 571 (727)
++++.||+||++..++...... ....+.+|+|+++++++|+|+++. ++| |+ +|||++ ..||++++
T Consensus 319 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~--vGei~irgp~v~~GY~~~p----- 390 (534)
T COG0318 319 AILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GE--VGEIWVRGPNVMKGYWNRP----- 390 (534)
T ss_pred ceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CC--ceEEEEECchhhhhhcCCh-----
Confidence 8999999999997666555544 235667799999999999997665 666 77 599998 46666643
Q ss_pred cccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCC
Q 004860 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (727)
Q Consensus 572 ~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~ 651 (727)
+.|+..|.+ ..||+|||+|++|+||+++|+||.+|+||++|++|+|.|||.++. +||.|.+++|++++|+.+
T Consensus 391 -e~t~~~f~~------~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~-~~~~V~~aavvgvpd~~~ 462 (534)
T COG0318 391 -EATAEAFDE------DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLA-EHPAVAEAAVVGVPDERW 462 (534)
T ss_pred -HHHHHhhcc------CCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHH-hCCCcceEEEEeCCCCcc
Confidence 355555543 239999999999999999999999999999999999999999995 999999999999999999
Q ss_pred CceEEEEEEEecCCC--CCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhh
Q 004860 652 GPEVLVIFVVLKKGF--TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 652 ~~~~l~a~vv~~~~~--~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 719 (727)
| ++++|+|+++++. ..+.+++.++ ++++++.|++|+.++++++||+|++||++|+.|++.+..
T Consensus 463 G-e~~~a~v~~~~~~~~~~~~~~i~~~----~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 463 G-ERVVAVVVLKPGGDAELTAEELRAF----LRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred C-ceEEEEEEEcCCCCCCCCHHHHHHH----HHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 9 9999999999863 3355666555 666889999999999999999999999999999999876
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=623.89 Aligned_cols=482 Identities=21% Similarity=0.225 Sum_probs=395.7
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+++++||++|+++.++ ++||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 58 ~a~~~pd~~Al~~~~~--------~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l 129 (549)
T PRK07788 58 AARRAPDRAALIDERG--------TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILL 129 (549)
T ss_pred HHHHCCCceEEEECCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEe
Confidence 3478999999998766 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCc-EEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
++.++.+++.+++++++++++|+++.... ....+....... .++....... ....+...++++......
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~- 199 (549)
T PRK07788 130 NTGFSGPQLAEVAAREGVKALVYDDEFTD------LLSALPPDLGRLRAWGGNPDDDE---PSGSTDETLDDLIAGSST- 199 (549)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhHH------HHHhhccccccceEEEEecCccc---cCCcCcccHHHHhcCCCC-
Confidence 99999999999999999999999875431 111111111111 1111111100 111234567776654321
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcC
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (727)
......+++.++++|||||||+||||+++|+++++.+......+++.++|++++..|++|..++..++.++..|
T Consensus 200 ------~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G 273 (549)
T PRK07788 200 ------APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALG 273 (549)
T ss_pred ------CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhC
Confidence 11123457889999999999999999999999998888777788899999999999999999988788899999
Q ss_pred cEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCC--CCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
+++++.. ..++..+++.|+++++|++.++|+++..|++.... ...++++||.+++|||++++++.+++.+.+ ++++
T Consensus 274 ~~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l 351 (549)
T PRK07788 274 STVVLRR-RFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAF-GPVL 351 (549)
T ss_pred CEEEECC-CCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHh-Cccc
Confidence 9998874 56889999999999999999999999999886543 455688999999999999999999888776 4689
Q ss_pred cccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-----cccCCCCccccccccc
Q 004860 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHE 575 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~~ 575 (727)
+|.||+||++.+............+++|+|+++++++|+|++++++|.|+. |||++. .||++.+. .
T Consensus 352 ~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~gY~~~~~-------~ 422 (549)
T PRK07788 352 YNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVV--GRIFVGNGFPFEGYTDGRD-------K 422 (549)
T ss_pred eeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCe--EEEEEeCCCccccccCCCc-------c
Confidence 999999999865443322222345789999999999999999999999985 999994 34443221 1
Q ss_pred cccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceE
Q 004860 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (727)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~ 655 (727)
.. . ..||+|||+|++++||+++|+||+||+||++|++|+|.|||++|. +||+|.+++|++.+++..+ +.
T Consensus 423 -~~------~--~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~~~~~~~~g-~~ 491 (549)
T PRK07788 423 -QI------I--DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLA-GHPDVVEAAVIGVDDEEFG-QR 491 (549)
T ss_pred -cc------c--CCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHH-hCCCeeEEEEECCcCcccc-cE
Confidence 11 1 139999999999999999999999999999999999999999995 9999999999999988878 89
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHH
Q 004860 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 716 (727)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 716 (727)
+++||+++++...+.+++++ +++++|++|++|..|+++++||+|+|||++|++|+++
T Consensus 492 ~~a~vv~~~~~~~~~~~l~~----~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 492 LRAFVVKAPGAALDEDAIKD----YVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred EEEEEEeCCCCCCCHHHHHH----HHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence 99999998876666555555 4677889999999999999999999999999999863
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-70 Score=618.93 Aligned_cols=512 Identities=22% Similarity=0.309 Sum_probs=423.3
Q ss_pred CcCCCCcccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 004860 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (727)
Q Consensus 166 ~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~ 244 (727)
+|+.+...|.++.++++++ +..+||++|+++.+.. ..+++||+||.++++++|++|.++ +++||+|+|+++|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~----~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~ 109 (570)
T PRK04319 35 SWLETGKVNIAYEAIDRHA-DGGRKDKVALRYLDAS----RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIP 109 (570)
T ss_pred ccCCCCceeHHHHHHHHhh-ccCCCCceEEEEECCC----CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH
Confidence 6888889999998888764 2357999999986531 234899999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCC
Q 004860 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVG 322 (727)
Q Consensus 245 ~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~ 322 (727)
++++++|||+++|++++|+++.++.+++.+++++++++++|+++........ ...+. .++++.....
T Consensus 110 ~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~--- 178 (570)
T PRK04319 110 ELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--------DDLPSLKHVLLVGEDVE--- 178 (570)
T ss_pred HHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--------hcCCCceEEEEECCCcC---
Confidence 9999999999999999999999999999999999999999998764322110 01111 2223221110
Q ss_pred CCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEE
Q 004860 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 402 (727)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~ 402 (727)
...+..+|.+++..... ........++++++|+|||||||.||||+++|+++++.+......+++.++|++++
T Consensus 179 --~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~ 251 (570)
T PRK04319 179 --EGPGTLDFNALMEQASD-----EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWC 251 (570)
T ss_pred --CCcCccCHHHHHhhcCC-----cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEe
Confidence 11234456666544321 11223346789999999999999999999999999988877777788999999999
Q ss_pred ecccccccch-HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEee
Q 004860 403 PTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFAST 479 (727)
Q Consensus 403 ~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~g 479 (727)
..++.|..+. +.++.++..|+++++.+...++..+++.|+++++|++.++|++++.|.+... ....++++||.+++|
T Consensus 252 ~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~g 331 (570)
T PRK04319 252 TADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSV 331 (570)
T ss_pred cCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEc
Confidence 9999999886 6688999999999998777889999999999999999999999999987542 234568899999999
Q ss_pred cCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe
Q 004860 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (727)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~ 559 (727)
|++++++..+++.+.+ +.++++.||+||++..++..........+++|+|+++++++|+|++++++|.|+. |||++.
T Consensus 332 G~~l~~~~~~~~~~~~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~--Gel~i~ 408 (570)
T PRK04319 332 GEPLNPEVVRWGMKVF-GLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRM--GNLAIK 408 (570)
T ss_pred ccCCCHHHHHHHHHHh-CCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCCCCc--eEEEEc
Confidence 9999999998888765 5789999999999865443333233456789999999999999999999999986 999984
Q ss_pred c-------ccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHh
Q 004860 560 P-------LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (727)
Q Consensus 560 ~-------~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (727)
. ||++. ++.+..+|. .| ||+|||+|++++||+++++||.||+||++|++|+|.|||++|.
T Consensus 409 ~~~~~~~~GY~~~------~~~~~~~~~-----~g--w~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~ 475 (570)
T PRK04319 409 KGWPSMMRGIWNN------PEKYESYFA-----GD--WYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLM 475 (570)
T ss_pred CCCChHHhHhcCC------HHHhhhhhc-----CC--ceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHh
Confidence 3 55553 334555554 12 9999999999999999999999999999999999999999996
Q ss_pred hcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHH
Q 004860 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRV 712 (727)
Q Consensus 633 ~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~ 712 (727)
+||.|.+++|++.+++..+ +.+++|+++.++...+ +++.+.|+++++++|++|++|..|+++++||+|++||++|+.
T Consensus 476 -~~~~V~~~~v~g~~~~~~g-~~~~a~v~~~~~~~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~ 552 (570)
T PRK04319 476 -EHPAVAEAGVIGKPDPVRG-EIIKAFVALRPGYEPS-EELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRV 552 (570)
T ss_pred -hCCCeeecceecccCcCCc-eEEEEEEEECCCCCCC-HHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHH
Confidence 9999999999999998888 9999999988765433 566678888899999999999999999999999999999999
Q ss_pred HHHHHhh
Q 004860 713 LRDQIKH 719 (727)
Q Consensus 713 L~~~~~~ 719 (727)
|+++..+
T Consensus 553 L~~~~~~ 559 (570)
T PRK04319 553 LKAWELG 559 (570)
T ss_pred HHHHHhC
Confidence 9998754
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-69 Score=628.45 Aligned_cols=465 Identities=18% Similarity=0.216 Sum_probs=384.7
Q ss_pred CCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCC
Q 004860 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (727)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~ 266 (727)
.+||++|+++ +. .+||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++|.
T Consensus 18 ~~pd~~a~~~-~~--------~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~ 88 (705)
T PRK06060 18 GWYDRPAFYA-AD--------VVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPE 88 (705)
T ss_pred cCCCceEEEe-cC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCC
Confidence 3799999986 33 799999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCC
Q 004860 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346 (727)
Q Consensus 267 ~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (727)
++.+++.+++++++++++|+++........ .. + ..+.+....... ..
T Consensus 89 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~------------~~--~----------------~~~~~~~~~~~~---~~ 135 (705)
T PRK06060 89 LHRDDHALAARNTEPALVVTSDALRDRFQP------------SR--V----------------AEAAELMSEAAR---VA 135 (705)
T ss_pred CCHHHHHHHHhcCCCcEEEEchHHhhhhcc------------cc--c----------------chhhhhhhhccc---cC
Confidence 999999999999999999998743211000 00 0 001111111000 00
Q ss_pred CCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhc-hhcCCCCCCEEEEecccccccch-HHhHHhhhcCcE
Q 004860 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW-AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (727)
Q Consensus 347 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~ 424 (727)
........+++++||+|||||||+||||+++|+++.+.+.+.. ..+++.++|++++.+++.|+.++ ..++.+|..|++
T Consensus 136 ~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~ 215 (705)
T PRK06060 136 PGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGS 215 (705)
T ss_pred CCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCE
Confidence 0011223568999999999999999999999999988776553 45788999999999999999887 568899999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
+++.+...++..+..+++++++|+++++|+++..|+.... ..++++||.+++|||++++++.+++.+.+++++++|.|
T Consensus 216 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~Y 293 (705)
T PRK06060 216 AVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGI 293 (705)
T ss_pred EEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeee
Confidence 9998766677888899999999999999999999987542 33578999999999999999999888888778999999
Q ss_pred cccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccc
Q 004860 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYF 579 (727)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f 579 (727)
|+||++..+.... ......+++|+|+++++++|+|++++++|.|+. |||+| ..||++.++ .+ +
T Consensus 294 G~tE~~~~~~~~~-~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~--GEl~i~g~~v~~GY~~~~~------~~---~ 361 (705)
T PRK06060 294 GSTEVGQTFVSNR-VDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVE--GDLWVRGPAIAKGYWNRPD------SP---V 361 (705)
T ss_pred eccccCceEEecc-CCCCCcCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEccchhhhhhhCCCc------cc---c
Confidence 9999986543332 222345789999999999999999999999996 99998 356776543 11 1
Q ss_pred cccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEE
Q 004860 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (727)
Q Consensus 580 ~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~ 659 (727)
.+.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. .||+|.+++|++.++...+ +.+++|
T Consensus 362 ------~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~~~V~~a~vv~~~~~~~~-~~~~a~ 433 (705)
T PRK06060 362 ------ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLII-EDEAVAEAAVVAVRESTGA-STLQAF 433 (705)
T ss_pred ------cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeecCccCC-eeEEEE
Confidence 13459999999999999999999999999999999999999999996 8999999999999987776 899999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHH
Q 004860 660 VVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI 717 (727)
Q Consensus 660 vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~ 717 (727)
|+...+...+.+ ..+.++++++++||+||+|..|+++++||+|+|||+||++|++++
T Consensus 434 vv~~~~~~~~~~-~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 434 LVATSGATIDGS-VMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred EEeccccCcChH-HHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence 998766544433 334567788999999999999999999999999999999999875
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=614.93 Aligned_cols=517 Identities=21% Similarity=0.206 Sum_probs=400.7
Q ss_pred hhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHh
Q 004860 178 CCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILA 256 (727)
Q Consensus 178 ~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~ka 256 (727)
..+.+. ++++||++|+++....+.....+++||+||.++++++|+.|+++ +++||+|+++++|++++++++|||+++
T Consensus 29 ~~l~~~--a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~ 106 (632)
T PRK07529 29 ELLSRA--AARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAA 106 (632)
T ss_pred HHHHHH--HHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 344433 37899999999853322223346999999999999999999999 999999999999999999999999999
Q ss_pred CCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCc--EEEEcCCCCCCCC-C---------
Q 004860 257 GYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGI-P--------- 324 (727)
Q Consensus 257 Ga~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~-~--------- 324 (727)
| +++|++|.++++++.+++++++++++|+++..... ...+.........+.. ++.+......... .
T Consensus 107 G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 184 (632)
T PRK07529 107 G-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGT-DIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRK 184 (632)
T ss_pred C-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCc-hHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccc
Confidence 9 56999999999999999999999999998753210 0111111112222222 2222211100000 0
Q ss_pred CCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEec
Q 004860 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT 404 (727)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~ 404 (727)
...+..+|.+.+..... ..........++++++++|||||||.||||+++|+++++........+++.++|++++..
T Consensus 185 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~ 261 (632)
T PRK07529 185 AHARILDFDAELARQPG---DRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGL 261 (632)
T ss_pred cccccCCHHHHHhcCCC---ccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEec
Confidence 11233456665544322 111112234679999999999999999999999999988877776778889999999999
Q ss_pred ccccccch-HHhHHhhhcCcEEEEecCCC--C---hhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEe
Q 004860 405 NLGWVMGP-VILFSSFLNGATLALYQGSP--L---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (727)
Q Consensus 405 ~~~~~~~~-~~~~~~l~~G~~lv~~~~~~--~---~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~ 478 (727)
|++|..+. ..++.+|..|+++++.+... + ...++++|+++++|++.++|+++..|++... ...++++||.+++
T Consensus 262 pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~slr~v~~ 340 (632)
T PRK07529 262 PLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLRYALC 340 (632)
T ss_pred CchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccceEEEEE
Confidence 99998887 45789999999999976321 2 3578899999999999999999999987643 3356899999999
Q ss_pred ecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEE--CCCC---CcCCCCCCee
Q 004860 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL--DECG---VPYPDDQPCV 553 (727)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vl--d~~~---~~~p~G~~gi 553 (727)
||+++++++.+++.+.+ +++++|.||+||+++++...........+++|+|++++.++|+ |++| +++|.|+.
T Consensus 341 gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~-- 417 (632)
T PRK07529 341 GAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEV-- 417 (632)
T ss_pred cCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCc--
Confidence 99999999999888765 6899999999999876544433333466899999999998884 7777 88999985
Q ss_pred eeEEEe-cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHh
Q 004860 554 GEVGLF-PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (727)
Q Consensus 554 Gel~v~-~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (727)
|||+|. ++.+.+ |++++.+...|. +.+||+|||+|++++||++++.||+||+||++|++|+|.|||++|.
T Consensus 418 Gel~v~gp~v~~G---Y~~~~~~~~~~~------~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~ 488 (632)
T PRK07529 418 GVLCIAGPNVFSG---YLEAAHNKGLWL------EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALL 488 (632)
T ss_pred eEEEEECCCcccc---ccCCcccccccc------CCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHH
Confidence 999983 222221 233333444443 2349999999999999999999999999999999999999999996
Q ss_pred hcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcC-CCcccceEEEcCCCCCCCCchhhHH
Q 004860 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN-PLFKVSLVKVVPEFPRTASNKLLRR 711 (727)
Q Consensus 633 ~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~-~~~~P~~i~~v~~lP~t~~GKvdR~ 711 (727)
+||+|.+|+|++.+++..| +.+++||+++++...+.+++.++ ++++|+ .+++|..|+++++||+|++||++|+
T Consensus 489 -~~p~V~~a~vvg~~d~~~g-e~~~a~v~l~~~~~~~~~~l~~~----~~~~l~~~~~~P~~i~~v~~lP~t~~GKi~r~ 562 (632)
T PRK07529 489 -RHPAVALAAAVGRPDAHAG-ELPVAYVQLKPGASATEAELLAF----ARDHIAERAAVPKHVRILDALPKTAVGKIFKP 562 (632)
T ss_pred -hCCCeeEEEEEeccCCCCC-ceeEEEEEEcCCCCCCHHHHHHH----HHHhcchhccCCcEEEEecCCCCCCCCcccHH
Confidence 8999999999999998888 99999999998777777777666 445554 4799999999999999999999999
Q ss_pred HHHHHHhhh
Q 004860 712 VLRDQIKHE 720 (727)
Q Consensus 712 ~L~~~~~~~ 720 (727)
+|++.+...
T Consensus 563 ~Lr~~~~~~ 571 (632)
T PRK07529 563 ALRRDAIRR 571 (632)
T ss_pred HHHHHHHHH
Confidence 999987543
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-69 Score=607.16 Aligned_cols=488 Identities=18% Similarity=0.184 Sum_probs=381.5
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
.++++|+++|+.+.+.+ ++||+||.++++++|+.|.+. +||+|+|+++|++++++++|||+++|++++|++
T Consensus 28 ~~~~~p~~~a~~~~~~~-------~~Ty~el~~~~~~lA~~L~~~--~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~ 98 (539)
T PRK06334 28 LCSEMTTATVCWDEQLG-------KLSYNQVRKAVIALATKVSKY--PDQHIGIMMPASAGAYIAYFATLLSGKIPVMIN 98 (539)
T ss_pred HHHhCCCceEEEeCCCC-------cccHHHHHHHHHHHHHHHhhc--cCCeEEEEcCCchHHHHHHHHHHhcCCeeEecC
Confidence 34689999999876532 899999999999999999884 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhh---hCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccC-
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG---AAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD- 340 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~- 340 (727)
|.++.+++.++|++++++++|+++..... ...... ..+..++++.... ....+.+......
T Consensus 99 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~ 163 (539)
T PRK06334 99 WSQGLREVTACANLVGVTHVLTSKQLMQH------LAQTHGEDAEYPFSLIYMEEVR---------KELSFWEKCRIGIY 163 (539)
T ss_pred cccchHHHHHHHHHcCCCEEEehHHHHHH------HhhhhhccccccccEEEEehhh---------hhccHHHhhhhhhh
Confidence 99999999999999999999998753211 111110 0111222222110 0001111110000
Q ss_pred -CCCCC---CCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHh
Q 004860 341 -YHPRP---NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VIL 415 (727)
Q Consensus 341 -~~~~~---~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~ 415 (727)
..+.. .........++++++|+|||||||.||||+++|+++.+...+....++++++|++++.+|+.|.+++ +.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 243 (539)
T PRK06334 164 MSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCT 243 (539)
T ss_pred hcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHH
Confidence 00000 0011123467999999999999999999999999999888777777889999999999999999887 447
Q ss_pred HHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhC
Q 004860 416 FSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (727)
Q Consensus 416 ~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~ 495 (727)
+.++.+|+++++.....++..+++.|+++++|++.++|++++.|++.......++++||.+++||+++++++.+++.+.+
T Consensus 244 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 323 (539)
T PRK06334 244 LFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTF 323 (539)
T ss_pred HHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHC
Confidence 88999999999876556889999999999999999999999999876544556789999999999999999999998888
Q ss_pred CCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECC-CCCcCCCCCCeeeeEEE-----ecccCCCCccc
Q 004860 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-----FPLYLGASDRL 569 (727)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v-----~~~y~~~~~~~ 569 (727)
+++.++|.||+||++.+++..........+++|+|++|++++|+|+ +++++|.|+. |||+| ..||++.++
T Consensus 324 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~--Gel~v~g~~~~~GY~~~~~-- 399 (539)
T PRK06334 324 PHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGET--GLVLTRGTSLFSGYLGEDF-- 399 (539)
T ss_pred CCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCce--EEEEEecCcccccccCCcc--
Confidence 7889999999999986655443333334567999999999999995 5889999985 99998 456666433
Q ss_pred cccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCcee------eEE
Q 004860 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE------TAA 643 (727)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~------a~v 643 (727)
.+ .|.. .++.+||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|. +||+|.+ ++|
T Consensus 400 ----~~--~~~~---~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~~~v~~~~~~~~~~v 469 (539)
T PRK06334 400 ----GQ--GFVE---LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILM-EGFGQNAADHAGPLVV 469 (539)
T ss_pred ----cc--ccee---eCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHH-HccCCccccccCceEE
Confidence 11 2221 124569999999999999999999999999999999999999999996 9999998 667
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhh-cCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhh
Q 004860 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721 (727)
Q Consensus 644 v~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~-L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 721 (727)
++.++. . ..+++|++.. .+.+++++ .+++. ++.|++|+.++++++||+|+||||||+.|+++....+
T Consensus 470 ~~~~~~--~-~~~~~~~~~~----~~~~~~~~----~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 537 (539)
T PRK06334 470 CGLPGE--K-VRLCLFTTFP----TSISEVND----ILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALAKSLF 537 (539)
T ss_pred EcCCCC--c-eEEEEEEecc----CChHHHHH----HHHhcCCcccccchheeeecccccccCCcccHHHHHHHHHHhh
Confidence 766642 2 4666666632 23345544 45554 7899999999999999999999999999999876543
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-68 Score=605.16 Aligned_cols=500 Identities=18% Similarity=0.137 Sum_probs=388.4
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+++++||++|+++.+. ++||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++||
T Consensus 16 ~~~~~p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl 87 (563)
T PLN02860 16 LATLRGNAVVTISGNR--------RRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPL 87 (563)
T ss_pred HHHhcCCceEEecCCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeC
Confidence 3478999999998665 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHh-hhCCCc-EEEEcCCCCCCCCCCCcCcccHHHHhcccCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL-GAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (727)
+|.++.+++.+++++++++++++++.... ....+. ...+.. ..++.................++++......
T Consensus 88 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (563)
T PLN02860 88 NYRWSFEEAKSAMLLVRPVMLVTDETCSS------WYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALG 161 (563)
T ss_pred CcccCHHHHHHHHHhcCceEEEEecccch------HHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCccc
Confidence 99999999999999999999999875311 111111 111211 1111111000000000001111111111000
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhc
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (727)
.........++++++++|||||||.||||+++|++++.........+++.++|++++.+|++|+.++..++.++..
T Consensus 162 ----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~ 237 (563)
T PLN02860 162 ----TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMV 237 (563)
T ss_pred ----cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHc
Confidence 0001112357899999999999999999999999998777666667889999999999999999999888899999
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCC--CCCCccceeEEEeecCCCChhhHHHHHhhCCCCc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (727)
|+++++.+ ..++..+++.|+++++|++.++|+++..|++.... ...++++||.+++||+++++++..++.+.+++++
T Consensus 238 G~~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 316 (563)
T PLN02860 238 GACHVLLP-KFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAK 316 (563)
T ss_pred CceEEecC-CCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCc
Confidence 99999976 56888999999999999999999999999875322 2245789999999999999999999988887889
Q ss_pred ccccccccccccccccCCCCC----------------------CccccccccCCCCceEEEECCCCCcCCCCCCeeeeEE
Q 004860 500 IIESCGGTELSSAYIQGSLLQ----------------------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVG 557 (727)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----------------------~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~ 557 (727)
++|.||+||+++.++...... .....++|+|+++++++|+|++ .|+ +|||+
T Consensus 317 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~-----~g~--~Gel~ 389 (563)
T PLN02860 317 LFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE-----SSR--VGRIL 389 (563)
T ss_pred eecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC-----CCc--eeEEE
Confidence 999999999976443222111 0112378999999999999976 455 49999
Q ss_pred E-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHh
Q 004860 558 L-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (727)
Q Consensus 558 v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (727)
+ ..||++.+ +.++..|.. .+||+|||+|++++||+++|+||+||+||++|++|+|.|||++|.
T Consensus 390 v~g~~~~~GY~~~~------~~t~~~~~~------~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~ 457 (563)
T PLN02860 390 TRGPHVMLGYWGQN------SETASVLSN------DGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLS 457 (563)
T ss_pred EecCcccccccCCc------cccchhccC------CCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHH
Confidence 8 35666533 345444432 239999999999999999999999999999999999999999995
Q ss_pred hcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCC----------ChHHHHHHHHHHHHh-hcCCCcccceEEEc-CCC
Q 004860 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS----------QPDKLKMIFSKAIQS-KLNPLFKVSLVKVV-PEF 700 (727)
Q Consensus 633 ~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~----------~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v-~~l 700 (727)
.||+|.+++|++.+++..+ +.++++|+++++... ......+.|++++++ .|++|++|..|+++ ++|
T Consensus 458 -~~p~V~~~~v~~~~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~~~~~~l 535 (563)
T PLN02860 458 -QHPGVASVVVVGVPDSRLT-EMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPF 535 (563)
T ss_pred -hCCCcceeEEEEEecCcCC-ceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEEEEecCC
Confidence 8999999999999998888 899999998875210 001112345556766 59999999988765 789
Q ss_pred CCCCCchhhHHHHHHHHhhhhccc
Q 004860 701 PRTASNKLLRRVLRDQIKHELSVR 724 (727)
Q Consensus 701 P~t~~GKvdR~~L~~~~~~~~~~~ 724 (727)
|+|++|||+|++|++++.+.+.+.
T Consensus 536 P~t~~GKi~r~~L~~~~~~~~~~~ 559 (563)
T PLN02860 536 PLTTTGKIRRDEVRREVLSHLQSL 559 (563)
T ss_pred CCCcccchhHHHHHHHHHHHHhcc
Confidence 999999999999999998877654
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-68 Score=521.89 Aligned_cols=498 Identities=19% Similarity=0.245 Sum_probs=417.6
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+|+++||++|+++.++ .+||+||+++++++|..|+++ +++||+|.+.+||..++++.++|.+|+|+++|.-
T Consensus 37 ~A~~~pdriAv~d~~~--------~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlA 108 (542)
T COG1021 37 HAARYPDRIAVIDGER--------RLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLA 108 (542)
T ss_pred HHhhcCCceEEecCcc--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhc
Confidence 3479999999999887 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
-|.....+|.+..+.++++.+|.+... ..+..-++...+....+....++....... ....+..+.....
T Consensus 109 LpsHr~~Ei~~f~~~~e~~~~i~~~~~-~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~------~~~~~~~~~~~a~--- 178 (542)
T COG1021 109 LPSHRASELGAFASQIEAALLIVARQH-SGFDYRPFARELVAKHPTLRHVIVAGEAEH------PSVLEAALCHPAG--- 178 (542)
T ss_pred cchhhHHHHHHHHHhhcchheeechhh-cccCcHHHHHHHHhhCCcceEEEEccCCCC------cchhhhhhhCccc---
Confidence 999999999999999999999998753 345555666666666666444433322110 0111222222211
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchH--HhHHhhhc
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLN 421 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l~~ 421 (727)
...+..+.+++++||...+.||||.||-+..||..+..++....+.++++..+++++..|..|.+.+. .+++.+..
T Consensus 179 --~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~a 256 (542)
T COG1021 179 --LFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLA 256 (542)
T ss_pred --cCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeee
Confidence 12223455778899999999999999999999999999999999999999999999999999887763 58899999
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
|+|+|+.+ ++++.....+|++++||+.-++|.+...|++....+..+++|||.+-+||..+++++.+++...+ +|.+-
T Consensus 257 gG~VVla~-~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQ 334 (542)
T COG1021 257 GGTVVLAP-DPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQ 334 (542)
T ss_pred ccEEEECC-CCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhh-CchHH
Confidence 99999976 67788899999999999999999999999999888899999999999999999999998887765 79999
Q ss_pred ccccccccccccccCCCCCCccccccccCC-CCceEEEECCCCCcCCCCCCeeeeEEEeccc-CCCCccccccccccccc
Q 004860 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGLFPLY-LGASDRLLNADHEEVYF 579 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v~~~y-~~~~~~~~~~~~~~~~f 579 (727)
+.+||.|.-++++--....+.-..+-|+|+ |.-+++|+|++|+++++|+. |++.....| +.+ +|..++..+..|
T Consensus 335 QVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~--G~LltRGPYTirG--Yyrap~HNa~aF 410 (542)
T COG1021 335 QVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEV--GELLTRGPYTIRG--YYRAPEHNARAF 410 (542)
T ss_pred HHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCc--ceeeecCCeeeee--eccCchhhhhcc
Confidence 999999987766544333333345779986 46689999999999999996 999873222 221 222344667778
Q ss_pred cccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEE
Q 004860 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (727)
Q Consensus 580 ~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~ 659 (727)
..+. +|+|||++++++||+|.+.||.||||+.+|++|-.+|||+.|+ .||.|.+|++|+.+|+-.| ++.|||
T Consensus 411 ~a~G------FYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL-~HP~V~~AAlVampDelLG-EksCAf 482 (542)
T COG1021 411 DADG------FYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLL-RHPAVHDAALVAMPDELLG-EKSCAF 482 (542)
T ss_pred CcCC------ceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHh-hCchhhhhhhhcCchhhcC-cceeEE
Confidence 7654 7999999999999999999999999999999999999999997 9999999999999999999 999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 660 VVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 660 vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
|+.++. ..+..+++.++++ ..|..|++|++|.+++++|+|+-||||||+|++.+...
T Consensus 483 iv~~~~-~~~~~qlr~~L~~---~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~~ 539 (542)
T COG1021 483 IVVKEP-PLRAAQLRRFLRE---RGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLASR 539 (542)
T ss_pred EEecCC-CCCHHHHHHHHHH---cchhhhcCCcceeecccCCCcccccccHHHHHHHhhhh
Confidence 999864 3667788887654 68899999999999999999999999999999887654
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-66 Score=588.34 Aligned_cols=497 Identities=21% Similarity=0.240 Sum_probs=398.5
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
+.+||++|+++.+. ..+.++.+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++|
T Consensus 35 ~~~p~~~A~~~~~~--~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~~vpl~~ 112 (547)
T PRK13295 35 ASCPDKTAVTAVRL--GTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMP 112 (547)
T ss_pred HHCCCceEEEecCC--CccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcEEecccc
Confidence 57899999998652 123345999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC-
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH- 342 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 342 (727)
.++.+++.+++++++++++++++.+.. .+.......+....+. .++++... ...+|.+++......
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 181 (547)
T PRK13295 113 IFRERELSFMLKHAESKVLVVPKTFRG-FDHAAMARRLRPELPALRHVVVVGGD----------GADSFEALLITPAWEQ 181 (547)
T ss_pred ccCHHHHHHHHHhcCceEEEEeccccC-cchHHHHHHHhhhCCCcceEEEecCC----------CccCHHHHhhCCcccc
Confidence 999999999999999999999875421 0111111122222222 22222111 112344443221100
Q ss_pred --CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhh
Q 004860 343 --PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (727)
Q Consensus 343 --~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l 419 (727)
............++++++++|||||||.||||+++|++++..+......+++.++|++++.+|++|..++ +.++.++
T Consensus 182 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l 261 (547)
T PRK13295 182 EPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPV 261 (547)
T ss_pred ccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHH
Confidence 0001111223456899999999999999999999999999888887778899999999999999998876 6688999
Q ss_pred hcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCc
Q 004860 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (727)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (727)
..|+++++.+ ..++..+++.++++++|++.++|+++..|.........++++||.+++||+++++++.+++.+.+ +++
T Consensus 262 ~~G~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~ 339 (547)
T PRK13295 262 MLGATAVLQD-IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAAL-GAK 339 (547)
T ss_pred HcCCeEEeCC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHh-CCC
Confidence 9999999876 45788999999999999999999999999876655566788999999999999999998888776 689
Q ss_pred ccccccccccccccccCCCC-CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccc
Q 004860 500 IIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (727)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (727)
++|.||+||++.+.+..... ......++|+|++++.++|+|++++++|.|+. |||+| ..||+++++
T Consensus 340 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g~~~~~gY~~~~~------ 411 (547)
T PRK13295 340 IVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQI--GRLQVRGCSNFGGYLKRPQ------ 411 (547)
T ss_pred eEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCCCCC--CeEEEEcCcccccccCCcc------
Confidence 99999999998654333221 12234678999999999999999999999986 99998 345555332
Q ss_pred cccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCc
Q 004860 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (727)
Q Consensus 574 ~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~ 653 (727)
.++.. ..| ||+|||+|++++||++++.||.||+||++|++|+|.|||++|. .||+|.+++|++.+++..+
T Consensus 412 ~t~~~------~~g--~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~-~~~~v~~~~v~~~~~~~~g- 481 (547)
T PRK13295 412 LNGTD------ADG--WFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLY-RHPAIAQVAIVAYPDERLG- 481 (547)
T ss_pred ccccC------CCC--CeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeecCCCC-
Confidence 33322 123 9999999999999999999999999999999999999999995 8999999999999988887
Q ss_pred eEEEEEEEecCCCCCChHHHHHHHHHHHHh-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
++++++|++.++...+.+++.+ .+++ .|++|++|..++++++||+|++||++|++|++++.+.
T Consensus 482 ~~~~~~v~~~~~~~~~~~~l~~----~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~~ 545 (547)
T PRK13295 482 ERACAFVVPRPGQSLDFEEMVE----FLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRGE 545 (547)
T ss_pred cEEEEEEEeCCCCCCCHHHHHH----HHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHhcC
Confidence 8999999988765555555554 4554 7999999999999999999999999999999988653
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-67 Score=591.80 Aligned_cols=481 Identities=18% Similarity=0.184 Sum_probs=388.4
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+++++||++|+++.++ ++||+||+++++++|++|.++ +++||+|+++++|++++++++|||+++|++++|+
T Consensus 52 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 123 (537)
T PRK13382 52 AAQRCPDRPGLIDELG--------TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLL 123 (537)
T ss_pred HHHhCCCCeEEEeCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEec
Confidence 4478999999998665 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
+|.++.+++.+++++++++++|++.... ..........+....++..... .....++++......
T Consensus 124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-- 188 (537)
T PRK13382 124 NTSFAGPALAEVVTREGVDTVIYDEEFS------ATVDRALADCPQATRIVAWTDE-------DHDLTVEVLIAAHAG-- 188 (537)
T ss_pred CcccCHHHHHHHHHhcCCCEEEEchhhH------HHHHHHHhhccccceEEEecCC-------cccccHHHHhhccCc--
Confidence 9999999999999999999999987532 1111111111111111111000 012334444432211
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCc
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (727)
. . ....+++.++++|||||||.||||+++|++++.........+.+..+++++...|++|+.++..++.++..|+
T Consensus 189 ---~-~-~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~ 263 (537)
T PRK13382 189 ---Q-R-PEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLAC 263 (537)
T ss_pred ---C-C-CCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCc
Confidence 0 0 1124678999999999999999999999998887777777788899999999999999999888889999999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
++++.+ ..++..+++.|+++++|++.++|++++.|++... ....++++||.+++|||+++++....+.+.++ .+++
T Consensus 264 ~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~ 341 (537)
T PRK13382 264 TIVTRR-RFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-DVIY 341 (537)
T ss_pred EEEECC-CcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcC-CcEE
Confidence 988864 5678899999999999999999999999987542 22345678999999999999999988888764 6799
Q ss_pred ccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-cccCCCCcccccccccccccc
Q 004860 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-PLYLGASDRLLNADHEEVYFR 580 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-~~y~~~~~~~~~~~~~~~~f~ 580 (727)
|.||+||++..++..........+++|+|++++.++|+|++++++|.|+. |||++. ++.+.+ |. ++.++. |.
T Consensus 342 ~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~g---Y~-~~~~~~-~~ 414 (537)
T PRK13382 342 NNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEV--GTIFVRNDTQFDG---YT-SGSTKD-FH 414 (537)
T ss_pred ecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCCe--eEEEEEcCCcccC---cc-ccchhh-cc
Confidence 99999999875543332223456789999999999999999999999985 999983 322221 11 222222 21
Q ss_pred ccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEE
Q 004860 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660 (727)
Q Consensus 581 ~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~v 660 (727)
.| ||+|||++++++||+++|+||+||+||++|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|
T Consensus 415 -----~g--~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~~~V~~~~v~~~~~~~~g-~~~~a~v 485 (537)
T PRK13382 415 -----DG--FMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLA-THPDVAEAAVIGVDDEQYG-QRLAAFV 485 (537)
T ss_pred -----CC--CEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHH-hCCCEeeEEEEccCccccC-CEEEEEE
Confidence 23 9999999999999999999999999999999999999999995 9999999999999988777 8999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHH
Q 004860 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715 (727)
Q Consensus 661 v~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 715 (727)
++.++...+.++ +++++++.|++|++|..++++++||+|++||++|++|++
T Consensus 486 v~~~~~~~~~~~----l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 486 VLKPGASATPET----LKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred EECCCCCCCHHH----HHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 988765444444 445677889999999999999999999999999999864
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-67 Score=592.70 Aligned_cols=492 Identities=20% Similarity=0.236 Sum_probs=391.9
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
+.+|+++|+++...+ .++||+||+++++++|++|.+ . +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 50 ~~~~~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 123 (560)
T PLN02574 50 HNHNGDTALIDSSTG------FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMN 123 (560)
T ss_pred cccCCCCEEEECCCC------CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcC
Confidence 468999999975431 279999999999999999999 8 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.++++++++++++++++.. ..+.. ....++.+..... .. ........|.+++.....
T Consensus 124 p~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~--- 188 (560)
T PLN02574 124 PSSSLGEIKKRVVDCSVGLAFTSPENV---------EKLSP-LGVPVIGVPENYD-FD-SKRIEFPKFYELIKEDFD--- 188 (560)
T ss_pred cccCHHHHHHHHHhcCCEEEEECHHHH---------HHHHh-cCCcEEecCcccc-cc-cCccCcccHHHHhhcCCc---
Confidence 999999999999999999999987532 11111 1112222211000 00 000112345554443221
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch----hcCC-CCCCEEEEecccccccch-HHhHHh
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDL-KVGDVYCWPTNLGWVMGP-VILFSS 418 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~-~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (727)
........++++++|+|||||||.||||+++|+++++.+..... .+.. ..+++++..+|+.|.+++ ..++.+
T Consensus 189 --~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~ 266 (560)
T PLN02574 189 --FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGL 266 (560)
T ss_pred --ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHH
Confidence 11122345789999999999999999999999999877654432 2222 356788999999999887 446677
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCC-CCCCccceeEEEeecCCCChhhHHHHHhhCCC
Q 004860 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-EGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (727)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~-~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~ 497 (727)
+..|+++++.+ ..++..++++|+++++|++.++|+++..|.+.... ...++++||.+++||++++++..+++.+.+++
T Consensus 267 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~ 345 (560)
T PLN02574 267 LSLGSTIVVMR-RFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPH 345 (560)
T ss_pred HhcCCEEEEec-CCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCC
Confidence 88999999886 46789999999999999999999999999876432 34568899999999999999999888888878
Q ss_pred CcccccccccccccccccCCC-CCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCcccc
Q 004860 498 NAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLL 570 (727)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~ 570 (727)
+++++.||+||++...+.... ......+++|+|+++++++|+| ++|+++|.|+. |||+| ..||++
T Consensus 346 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~--Gei~v~g~~~~~GY~~------ 417 (560)
T PLN02574 346 VDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNC--GELWIQGPGVMKGYLN------ 417 (560)
T ss_pred CcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCC--eEEEEECcchhhhhcC------
Confidence 899999999999865433222 2223457899999999999999 78999999996 99999 345555
Q ss_pred ccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCC
Q 004860 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (727)
Q Consensus 571 ~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~ 650 (727)
+++.+...|.. .+||+|||+|++++||+++++||+||+||++|++|++.|||++|. .||+|.+++|++.+++.
T Consensus 418 ~~~~t~~~~~~------~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~V~~~~v~~~~~~~ 490 (560)
T PLN02574 418 NPKATQSTIDK------DGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLI-SHPEIIDAAVTAVPDKE 490 (560)
T ss_pred ChhHhhhhccC------CCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHH-hCCCcceEEEEccccCC
Confidence 33355555532 239999999999999999999999999999999999999999996 99999999999999887
Q ss_pred CCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhc
Q 004860 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722 (727)
Q Consensus 651 ~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 722 (727)
.+ +.+++||+.+++...+.+++. ++++++|++|+.|..++++++||+|++||++|+.|++++.+...
T Consensus 491 ~g-~~~~a~v~~~~~~~~~~~~l~----~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~~~~ 557 (560)
T PLN02574 491 CG-EIPVAFVVRRQGSTLSQEAVI----NYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTNSVS 557 (560)
T ss_pred CC-cceEEEEEeCCCCCCCHHHHH----HHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhhccc
Confidence 77 889999998876555555544 45778899999999999999999999999999999999866544
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=591.18 Aligned_cols=497 Identities=21% Similarity=0.235 Sum_probs=393.5
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
++.+|+++|++..++ .+||+||+++++++|++|.+ . +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 34 a~~~p~~~al~~~~~--------~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l 105 (562)
T PRK05677 34 CQRFADKPAFSNLGK--------TLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNT 105 (562)
T ss_pred HHhCCCCeeEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeec
Confidence 367899999998666 89999999999999999997 6 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCC-------------------CC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG-------------------IP 324 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~ 324 (727)
+|.++.+++.+++++++++++|+++.... ....+........+++........ ..
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (562)
T PRK05677 106 NPLYTAREMEHQFNDSGAKALVCLANMAH------LAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAY 179 (562)
T ss_pred CCCCCHHHHHHHHhccCceEEEEecchhh------hHHHhhhccCcceeEEecccccccchhhhhcccchhhcccccccc
Confidence 99999999999999999999999764321 111111111112222211000000 00
Q ss_pred CCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcC--CCC-CCEEE
Q 004860 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKV-GDVYC 401 (727)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~--~~~-~d~~l 401 (727)
..+....+.+.+..... .........++++++|+|||||||+||||+++|++++..+......++ +.. .++++
T Consensus 180 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 255 (562)
T PRK05677 180 HLPQAVKFNDALAKGAG----QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILI 255 (562)
T ss_pred CCcccccHHHHHhcCCC----CCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEE
Confidence 00112334444433221 111122346799999999999999999999999999876655444333 343 36788
Q ss_pred Eecccccccch-HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeec
Q 004860 402 WPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (727)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gG 480 (727)
+..|+.|..++ +.++.++..|++.++.+...++..+++.|+++++|++..+|+++..|.........+++++|.+++||
T Consensus 256 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG 335 (562)
T PRK05677 256 APLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGG 335 (562)
T ss_pred EcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcC
Confidence 99999998887 45777888899888877666788999999999999999999999999876544455678999999999
Q ss_pred CCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE--
Q 004860 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-- 558 (727)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-- 558 (727)
++++++..+++.+.+ ++++++.||+||++.++..... .....+++|+|++++.++|+|++++++|.|+. |||++
T Consensus 336 ~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g 411 (562)
T PRK05677 336 MALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPS-QAIQVGTIGIPVPSTLCKVIDDDGNELPLGEV--GELCVKG 411 (562)
T ss_pred ccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCc-cCCCCCccCccCCCCEEEEECCCCCCCCCCCC--eEEEEec
Confidence 999999988887765 6899999999998865543322 23345789999999999999999999999986 99998
Q ss_pred ---ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcC
Q 004860 559 ---FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635 (727)
Q Consensus 559 ---~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~ 635 (727)
..||+++ ++.+++.|.. ..||+|||+|++++||++++.||+||+||++|++|+|.|||++|. .|
T Consensus 412 ~~~~~gY~~~------~~~t~~~~~~------~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~-~~ 478 (562)
T PRK05677 412 PQVMKGYWQR------PEATDEILDS------DGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLA-AL 478 (562)
T ss_pred CccchhhcCC------chhhhhccCC------CCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHH-hC
Confidence 3466653 3456666643 239999999999999999999999999999999999999999995 99
Q ss_pred CCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHH
Q 004860 636 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715 (727)
Q Consensus 636 p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 715 (727)
|+|.+++|+++++...+ +.++++++++++...+.+++++ ++++.|++|++|..|+++++||+|+|||++|++|++
T Consensus 479 ~~v~~~~v~g~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~----~~~~~l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~ 553 (562)
T PRK05677 479 PGVLQCAAIGVPDEKSG-EAIKVFVVVKPGETLTKEQVME----HMRANLTGYKVPKAVEFRDELPTTNVGKILRRELRD 553 (562)
T ss_pred CCccEEEEEeccCccCC-ceEEEEEEeCCCCCCCHHHHHH----HHHHhhhhccCCcEEEEeccCCCCCcccccHHHHHH
Confidence 99999999999988877 8999999987765566555555 466788999999999999999999999999999999
Q ss_pred HHhhhhc
Q 004860 716 QIKHELS 722 (727)
Q Consensus 716 ~~~~~~~ 722 (727)
++..+..
T Consensus 554 ~~~~~~~ 560 (562)
T PRK05677 554 EELKKAG 560 (562)
T ss_pred HHHHhcc
Confidence 8766543
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-67 Score=602.46 Aligned_cols=507 Identities=17% Similarity=0.130 Sum_probs=385.4
Q ss_pred CCCCCCceEEEEec-CCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 186 RRKEDNTVAIVWRE-DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 186 a~~~pd~~Al~~~~-~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
++++||++|+.+.- ..+..+.++.+||+||+++++++|++|+++ +++||+|+|+++|+++|+++++||+++|++++|+
T Consensus 54 a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl 133 (651)
T PLN02736 54 VETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPL 133 (651)
T ss_pred HHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEe
Confidence 47899999996421 111223456799999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC-cEEEEcCCCCCCCC----CCCcCcccHHHHhcc
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGI----PLREQDLSWKDFLSS 338 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~ 338 (727)
++.++.+++.+++++++++++|+++... +.........+. ..+++......... .......+|++++..
T Consensus 134 ~~~~~~~~l~~il~~~~~~~l~~~~~~~------~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (651)
T PLN02736 134 YDTLGPDAVKFIVNHAEVAAIFCVPQTL------NTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQ 207 (651)
T ss_pred ecCCCHHHHHHHHhccCCCEEEECHHHH------HHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHh
Confidence 9999999999999999999999987532 112222222222 22222111000000 001123467776654
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHh
Q 004860 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (727)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (727)
.... ........++++++|+|||||||.||||++||++++..+.+....+++.++|++++++|++|+++.+.++.+
T Consensus 208 ~~~~----~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 283 (651)
T PLN02736 208 GRSS----PQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVM 283 (651)
T ss_pred cccC----CCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 3221 111223467999999999999999999999999999988887778889999999999999999999888899
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCC----------------------------CCC-C-
Q 004860 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC----------------------------LEG-L- 468 (727)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~----------------------------~~~-~- 468 (727)
|..|+++++.++ ++..+++.|+++++|+++++|++++.|.+... ... .
T Consensus 284 l~~G~~i~~~~~--~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (651)
T PLN02736 284 LHYGVAVGFYQG--DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPM 361 (651)
T ss_pred HHcCCEEEEeCC--CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCch
Confidence 999999998764 56789999999999999999999988754310 000 0
Q ss_pred -----------Cc-cceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceE
Q 004860 469 -----------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL 536 (727)
Q Consensus 469 -----------~l-~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~ 536 (727)
.+ ++||.+++||+++++++.+++...+ ++++++.||+||+++.++.... .....+++|+|+||+++
T Consensus 362 ~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~pg~~v 439 (651)
T PLN02736 362 WDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGMDE-GDNLSGHVGSPNPACEV 439 (651)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechHHhchheeccCC-CCCCCCccCCccCceEE
Confidence 01 4899999999999999998887665 5789999999999865543332 23456789999999999
Q ss_pred EEECC-CCCcCCCCCCe-eeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEe
Q 004860 537 VILDE-CGVPYPDDQPC-VGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQG 609 (727)
Q Consensus 537 ~vld~-~~~~~p~G~~g-iGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~G 609 (727)
+|+|. ++.....+.++ .|||+| +.||++ +++.|+..|..+ .||+|||+|++|+||+|+|+|
T Consensus 440 ~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~------~~~~t~~~~~~d------gw~~TGDlg~~d~dG~l~i~G 507 (651)
T PLN02736 440 KLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYK------DEVQTREVIDED------GWLHTGDIGLWLPGGRLKIID 507 (651)
T ss_pred EEEEccccCcccCCCCCCCceEEecCCcccccccc------CHHHHHhhhccC------CCeeccceEEEcCCCcEEEEE
Confidence 99983 22211111111 388888 456655 344566666422 399999999999999999999
Q ss_pred ecCCeeec-CceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCC--------CCChH---------
Q 004860 610 RADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF--------TSQPD--------- 671 (727)
Q Consensus 610 R~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~--------~~~~~--------- 671 (727)
|.||+||+ +|++|+|.|||++|. .||.|.+|+|++. ..+ +.++|+|+++++. ..+.+
T Consensus 508 R~kd~ik~~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~---~~~-~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (651)
T PLN02736 508 RKKNIFKLAQGEYIAPEKIENVYA-KCKFVAQCFVYGD---SLN-SSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDP 582 (651)
T ss_pred echhheEcCCCcEechHHHHHHHh-cCCCeeEEEEEec---CCC-ceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCH
Confidence 99999997 699999999999995 8999999999982 244 7899999987531 12212
Q ss_pred HHHHHHHHHHH-----hhcCCCcccceEEEcCCCC------CCCCchhhHHHHHHHHhhhhcc
Q 004860 672 KLKMIFSKAIQ-----SKLNPLFKVSLVKVVPEFP------RTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 672 ~l~~~l~~~l~-----~~L~~~~~P~~i~~v~~lP------~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
++++.+.+.++ ..|+.|++|++|+++++.| +|++||++|+.|++.+.+++++
T Consensus 583 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~~ 645 (651)
T PLN02736 583 RVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISD 645 (651)
T ss_pred HHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHHH
Confidence 22333333332 3699999999999999886 7999999999999999888764
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-66 Score=585.12 Aligned_cols=487 Identities=21% Similarity=0.251 Sum_probs=394.5
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
+++||++|+++.+.+ +++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++|
T Consensus 34 ~~~~~~~a~~~~~~~------~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 107 (537)
T PLN02246 34 SEFSDRPCLIDGATG------RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANP 107 (537)
T ss_pred HhCCCCeEEEecCCC------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCC
Confidence 578999999875321 2899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (727)
.++.+++..++++++++++|+++... .............++.+.... .....+.++......
T Consensus 108 ~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~---- 169 (537)
T PLN02246 108 FYTPAEIAKQAKASGAKLIITQSCYV------DKLKGLAEDDGVTVVTIDDPP--------EGCLHFSELTQADEN---- 169 (537)
T ss_pred CCCHHHHHHHHHhcCCcEEEEccchH------HHHHHHhhcCCceEEEeCCCC--------CCceeHHHHhcCCCC----
Confidence 99999999999999999999987532 111111111111222222110 122334444332211
Q ss_pred CCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch----hcCCCCCCEEEEecccccccch-HHhHHhhh
Q 004860 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (727)
Q Consensus 346 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~ 420 (727)
..+.....+++++|++|||||||.||||+++|+++++.+.+... .+++.++|++++.+|+.|++++ ..++.++.
T Consensus 170 -~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~ 248 (537)
T PLN02246 170 -ELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLR 248 (537)
T ss_pred -CCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHh
Confidence 11223456799999999999999999999999999877654432 5678999999999999999987 44678899
Q ss_pred cCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
.|+++++.+. .++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||++++++..+++.+.++++.+
T Consensus 249 ~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 327 (537)
T PLN02246 249 VGAAILIMPK-FEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVL 327 (537)
T ss_pred cCCEEEEeCC-CCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeE
Confidence 9999999864 577899999999999999999999999987655555678899999999999999999999998888889
Q ss_pred cccccccccccccccCCC----CCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCcccc
Q 004860 501 IESCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLL 570 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~ 570 (727)
++.||+||++.+++.... ......+++|+|+++++++|+| ++++++|.|+. |||++ ..||++.+
T Consensus 328 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~~~GY~~~~---- 401 (537)
T PLN02246 328 GQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQP--GEICIRGPQIMKGYLNDP---- 401 (537)
T ss_pred eccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCc--eEEEEECCchhccccCCc----
Confidence 999999999865433211 1123446799999999999999 57999999996 99998 34555533
Q ss_pred ccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCC
Q 004860 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (727)
Q Consensus 571 ~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~ 650 (727)
+.++..|.. ..||+|||+|++++||+++++||+||+||++|+||+|.|||++|. .||+|.+++|++.++..
T Consensus 402 --~~~~~~~~~------~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~-~~~~v~~~~v~~~~~~~ 472 (537)
T PLN02246 402 --EATANTIDK------DGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-SHPSIADAAVVPMKDEV 472 (537)
T ss_pred --hhhhhcccC------CCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHH-hCCCeeEEEEEcccCcc
Confidence 344444432 249999999999999999999999999999999999999999996 89999999999988887
Q ss_pred CCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhh
Q 004860 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 651 ~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 719 (727)
.+ +.++++++..++...+.++ |++.++++|++|++|..++++++||+|+|||++|++|++++.+
T Consensus 473 ~~-~~~~~~v~~~~~~~~~~~~----l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~~ 536 (537)
T PLN02246 473 AG-EVPVAFVVRSNGSEITEDE----IKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLAA 536 (537)
T ss_pred CC-ceeEEEEEeCCCCCCCHHH----HHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 77 8999999988765555444 4455778899999999999999999999999999999998753
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-66 Score=584.47 Aligned_cols=495 Identities=21% Similarity=0.239 Sum_probs=400.1
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
++++|+++|+++.+. ++||+||.++++++|..|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 20 a~~~~~~~a~~~~~~--------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 91 (546)
T PRK08314 20 ARRYPDKTAIVFYGR--------AISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPV 91 (546)
T ss_pred HHHcCCCcceeecCc--------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEeec
Confidence 368999999999877 999999999999999999986 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCc-EEEEcCCCC---CCC--------------CCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGN---DVG--------------IPL 325 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~---~~~--------------~~~ 325 (727)
+|.++.+++.+++++++++++++++.... ............ .++...... ... ...
T Consensus 92 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (546)
T PRK08314 92 NPMNREEELAHYVTDSGARVAIVGSELAP------KVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALA 165 (546)
T ss_pred CcCcCHHHHHHHHHhCCCeEEEEccchhh------hHHHHhhccCcceEEEecchhhcccccccCccccccccccccccc
Confidence 99999999999999999999999875431 111111111111 111110000 000 000
Q ss_pred CcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecc
Q 004860 326 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 405 (727)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~ 405 (727)
..+...|.+....... .......++++++|+|||||||.||||+++|+++++.+......+++.++|++++..|
T Consensus 166 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p 239 (546)
T PRK08314 166 PGGVVAWKEALAAGLA------PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLP 239 (546)
T ss_pred ccccccHHHHhcccCC------CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcC
Confidence 1123456555443211 1223446789999999999999999999999999998888777888999999999999
Q ss_pred cccccch-HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCC
Q 004860 406 LGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSN 484 (727)
Q Consensus 406 ~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~ 484 (727)
+.|..++ +.++.++.+|+++++.+. .++..++++++++++|++.++|+++..++........+++++|.+++||++++
T Consensus 240 ~~~~~g~~~~~~~~l~~G~~i~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~ 318 (546)
T PRK08314 240 LFHVTGMVHSMNAPIYAGATVVLMPR-WDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMP 318 (546)
T ss_pred chHHHHHHHHHHHHHHcCCeEEecCC-CCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCC
Confidence 9999987 557889999999999873 57788999999999999999999999998765555567889999999999999
Q ss_pred hhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----
Q 004860 485 VDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL----- 558 (727)
Q Consensus 485 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v----- 558 (727)
++..+++.+.+ +.++++.||+||++........ .....+++|+|+++++++|+| +++++++.|.. |||++
T Consensus 319 ~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~ 394 (546)
T PRK08314 319 EAVAERLKELT-GLDYVEGYGLTETMAQTHSNPP-DRPKLQCLGIPTFGVDARVIDPETLEELPPGEV--GEIVVHGPQV 394 (546)
T ss_pred HHHHHHHHHHc-CCcEEecccccccccceecCCC-cCCCCCccCcccCCeEEEEEeCCCCcCCCCCCc--eEEEEECCch
Confidence 99998888776 5789999999999865443322 223456899999999999999 46899999985 99998
Q ss_pred ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCc
Q 004860 559 FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638 (727)
Q Consensus 559 ~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V 638 (727)
..||++. ++.++..|..+ +|.+||+|||+|+++++|+++++||+||+||++|++|+|.|||++|. ++|+|
T Consensus 395 ~~gY~~~------~~~t~~~f~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~-~~~~v 464 (546)
T PRK08314 395 FKGYWNR------PEATAEAFIEI---DGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLY-KHPAI 464 (546)
T ss_pred hccccCC------hhHhhhhhhhc---CCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHH-hCcch
Confidence 3455553 33455555432 35569999999999999999999999999999999999999999995 89999
Q ss_pred eeeEEEeecCCCCCceEEEEEEEecCCCC--CChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHH
Q 004860 639 LETAAISVSPAGGGPEVLVIFVVLKKGFT--SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 716 (727)
Q Consensus 639 ~~a~vv~~~~~~~~~~~l~a~vv~~~~~~--~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 716 (727)
.+++|++.++...+ +.+++|++++++.. .+.+ .+++++++.|++|++|..++++++||+|+|||++|+.|++.
T Consensus 465 ~~~~v~~~~~~~~~-~~~~a~v~~~~~~~~~~~~~----~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~ 539 (546)
T PRK08314 465 QEACVIATPDPRRG-ETVKAVVVLRPEARGKTTEE----EIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQ 539 (546)
T ss_pred heEEEEeCCCcccC-ceeEEEEEECCCCCCCCCHH----HHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHH
Confidence 99999999988777 89999999887543 2323 45556778999999999999999999999999999999886
Q ss_pred Hhhh
Q 004860 717 IKHE 720 (727)
Q Consensus 717 ~~~~ 720 (727)
.+..
T Consensus 540 ~~~~ 543 (546)
T PRK08314 540 EKAR 543 (546)
T ss_pred Hhhh
Confidence 6543
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-66 Score=586.78 Aligned_cols=497 Identities=16% Similarity=0.153 Sum_probs=387.6
Q ss_pred CCCCCCceEEEEecCCC--CCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEee
Q 004860 186 RRKEDNTVAIVWREDRC--DESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~--~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vp 262 (727)
++++||++|+++.+... ....++++||+||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|
T Consensus 16 a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v~ 95 (552)
T PRK09274 16 AQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVL 95 (552)
T ss_pred HHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEEE
Confidence 36799999999865411 012234799999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhC-C--CcEEEEcCCCCCCCCCCCcCcccHHHHhccc
Q 004860 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-P--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (727)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (727)
++|.++.+++.+++++++++++|+++... ....+.... . ...+.+... .......+.++....
T Consensus 96 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~ 161 (552)
T PRK09274 96 VDPGMGIKNLKQCLAEAQPDAFIGIPKAH-------LARRLFGWGKPSVRRLVTVGGR-------LLWGGTTLATLLRDG 161 (552)
T ss_pred cCCCccHHHHHHHHHhcCCCEEEeccHHH-------HHHHHhccCccchhheeccccc-------cccCCccHHHhcccC
Confidence 99999999999999999999999865210 001111000 0 011111100 001122455543221
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhh
Q 004860 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419 (727)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l 419 (727)
.. .........++++++|+|||||||.||||+++|+++.+.+.+....+++.++|++++..|+.+. ..+
T Consensus 162 ~~----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~-------~~~ 230 (552)
T PRK09274 162 AA----APFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFAL-------FGP 230 (552)
T ss_pred cc----ccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHh-------hhh
Confidence 11 1112233467899999999999999999999999999988887788899999999888776543 234
Q ss_pred hcCcEEEEecC------CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHh
Q 004860 420 LNGATLALYQG------SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (727)
Q Consensus 420 ~~G~~lv~~~~------~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~ 493 (727)
..|+++++.+. ..++..+++.|+++++|+++++|++++.|.+.......++++||.+++||++++++..+++.+
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~ 310 (552)
T PRK09274 231 ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRA 310 (552)
T ss_pred hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHH
Confidence 56888887642 346789999999999999999999999998865545567899999999999999999999988
Q ss_pred hCC-CCcccccccccccccccccCCCC---------CCccccccccCCCCceEEEECC---------CCCcCCCCCCeee
Q 004860 494 KAW-YNAIIESCGGTELSSAYIQGSLL---------QPQAFGAFSTATMTAGLVILDE---------CGVPYPDDQPCVG 554 (727)
Q Consensus 494 ~~~-~~~l~n~YG~TE~~~~~~~~~~~---------~~~~~~~iG~p~~~~~~~vld~---------~~~~~p~G~~giG 554 (727)
.++ +++++|.||+||++.+++..... ......++|+|+++++++|+|+ ++++++.|+. |
T Consensus 311 ~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~--G 388 (552)
T PRK09274 311 MLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEI--G 388 (552)
T ss_pred HcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCe--e
Confidence 876 47999999999998654332211 1112247899999999999994 5678999985 9
Q ss_pred eEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHH
Q 004860 555 EVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 629 (727)
Q Consensus 555 el~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~ 629 (727)
||++ ..||++.+ +.+...|..++ .|.+||+|||+|++|+||+++++||.||+||++|++|+|.|||+
T Consensus 389 el~v~g~~~~~GY~~~~------~~t~~~~~~~~--~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~ 460 (552)
T PRK09274 389 EIVVAGPMVTRSYYNRP------EATRLAKIPDG--QGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCER 460 (552)
T ss_pred EEEEecCcccccccCCh------HHhhhhhcccC--CCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHH
Confidence 9998 35666543 34444443222 23369999999999999999999999999999999999999999
Q ss_pred HHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCC--CCch
Q 004860 630 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT--ASNK 707 (727)
Q Consensus 630 ~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t--~~GK 707 (727)
+|. +||+|.+|+|++.+++. + +.++++|+++++...+.+++.+++++.++.. +.++.|..++++++||+| +|||
T Consensus 461 ~l~-~~p~V~~~~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~~~~lP~t~~~~GK 536 (552)
T PRK09274 461 IFN-THPGVKRSALVGVGVPG-A-QRPVLCVELEPGVACSKSALYQELRALAAAH-PHTAGIERFLIHPSFPVDIRHNAK 536 (552)
T ss_pred HHH-hCcccceeEEEEeCCCC-C-ceEEEEEEccCccccchHHHhhhhHHHHHhc-CCCcceeEEeccCCCCcccccccc
Confidence 995 99999999999998753 4 6899999998877666677888888776544 567888999999999999 7999
Q ss_pred hhHHHHHHHHhhhh
Q 004860 708 LLRRVLRDQIKHEL 721 (727)
Q Consensus 708 vdR~~L~~~~~~~~ 721 (727)
|||++|+++++..+
T Consensus 537 i~r~~L~~~~~~~~ 550 (552)
T PRK09274 537 IFREKLAVWAAKQL 550 (552)
T ss_pred ccHHHHHHHHHHhh
Confidence 99999999887664
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-65 Score=575.75 Aligned_cols=488 Identities=25% Similarity=0.291 Sum_probs=400.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++.+||++|+++.+. ++||+||.+++.++|+.|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 15 ~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~ 86 (513)
T PRK07656 15 ARRFGDKEAYVFGDQ--------RLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLN 86 (513)
T ss_pred HHHCCCCeEEEeCCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecC
Confidence 367899999999776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC-cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
|.++.+++..++++++++++++++.... .........+. ..+++...... ........+|.++......
T Consensus 87 ~~~~~~~~~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-- 156 (513)
T PRK07656 87 TRYTADEAAYILARGDAKALFVLGLFLG------VDYSATTRLPALEHVVICETEED--DPHTEKMKTFTDFLAAGDP-- 156 (513)
T ss_pred cccCHHHHHHHHhhcCceEEEEchhhHH------HHHHHHhccCCccEEEEEcCccc--ccCccccccHHHHHhcCCC--
Confidence 9999999999999999999999875331 11111122222 12222111111 0011123457776543321
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcC
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G 422 (727)
........++++++|+|||||||.||+|.++|+++.+.+......++++++|++++..|+.|++++ +.++.++..|
T Consensus 157 ---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G 233 (513)
T PRK07656 157 ---AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRG 233 (513)
T ss_pred ---CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcC
Confidence 112234567899999999999999999999999999888887788899999999999999999987 4578899999
Q ss_pred cEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccc
Q 004860 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (727)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (727)
+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++.+.++...++|
T Consensus 234 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~ 312 (513)
T PRK07656 234 ATILPLP-VFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLT 312 (513)
T ss_pred ceEEecC-cCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEe
Confidence 9998865 457889999999999999999999999999876666667899999999999999999998888775338999
Q ss_pred cccccccccccccCCCCCCcc--ccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccc
Q 004860 503 SCGGTELSSAYIQGSLLQPQA--FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (727)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~--~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~ 575 (727)
.||+||++++.+.+....... .+++|+|++++.++|+|+++++++.|+. |||++ ..||++.+ ..+
T Consensus 313 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~~~------~~~ 384 (513)
T PRK07656 313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEV--GELLVRGPNVMKGYYDDP------EAT 384 (513)
T ss_pred EEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCc--eEEEEEcchhhhhhcCCH------HHH
Confidence 999999987665544332222 5789999999999999999999999986 99998 34555532 234
Q ss_pred cccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceE
Q 004860 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (727)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~ 655 (727)
...|.. ..||+|||+|++++||+++++||.||+||++|.+|+|.+||++|. ++|+|.+++|++.++...+ +.
T Consensus 385 ~~~~~~------~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~i~~~~v~~~~~~~~g-~~ 456 (513)
T PRK07656 385 AAAIDA------DGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLY-EHPAVAEAAVIGVPDERLG-EV 456 (513)
T ss_pred hhhhcc------CCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHH-hCCCeeEEEEEecCCcccC-ce
Confidence 434431 239999999999999999999999999999999999999999995 8999999999999888777 88
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHH
Q 004860 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715 (727)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 715 (727)
+++||+.+++...+.+++.+ .+++.|++|++|..++++++||+|++||++|+.|++
T Consensus 457 ~~~~v~~~~~~~~~~~~l~~----~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 457 GKAYVVLKPGAELTEEELIA----YCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred EEEEEEECCCCCCCHHHHHH----HHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 99999987655556555554 477889999999999999999999999999999975
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-66 Score=593.49 Aligned_cols=502 Identities=16% Similarity=0.165 Sum_probs=377.7
Q ss_pred CCCCCCceEEEEecC-CCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 186 RRKEDNTVAIVWRED-RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 186 a~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
++++||++|+.+.+. .+..+.+..+||+||+++++++|++|+++ +++||+|+|+++|+++|++++|||+++|+++||+
T Consensus 55 a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl 134 (666)
T PLN02614 55 VEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPL 134 (666)
T ss_pred HHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEe
Confidence 478999999986421 01112345689999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC------CcEEEEcCCCCCCC--C-CCCcCcccHHH
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP------LKAIVLPAIGNDVG--I-PLREQDLSWKD 334 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~--~-~~~~~~~~~~~ 334 (727)
+|.++.+++.+++++++++++|+++... ..+....+ ..++++........ . .......+|++
T Consensus 135 ~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (666)
T PLN02614 135 YDTLGAGAVEFIISHSEVSIVFVEEKKI---------SELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDE 205 (666)
T ss_pred cCCCCHHHHHHHHhccCCCEEEECHHHH---------HHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHH
Confidence 9999999999999999999999986421 12222111 12222221100000 0 00011245666
Q ss_pred HhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhc-----CCCCCCEEEEecccccc
Q 004860 335 FLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-----DLKVGDVYCWPTNLGWV 409 (727)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~~~ 409 (727)
++...... ........++|+++|+|||||||.||||++||+++++.+.+....+ +++++|++++++|++|.
T Consensus 206 ~~~~~~~~----~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~ 281 (666)
T PLN02614 206 FLKLGEGK----QYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHI 281 (666)
T ss_pred HHhhcccC----CCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHH
Confidence 65433210 0111223579999999999999999999999999988776544332 57899999999999998
Q ss_pred cchHHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCC-------------------------
Q 004860 410 MGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC------------------------- 464 (727)
Q Consensus 410 ~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~------------------------- 464 (727)
++....+.++..|+++++.+ .++..+++.|+++++|+++++|++++.|.....
T Consensus 282 ~~~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 359 (666)
T PLN02614 282 FDRVIEECFIQHGAAIGFWR--GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNM 359 (666)
T ss_pred HHHHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 88755566788999998875 367899999999999999999999998764210
Q ss_pred --------CCC-----------CCc-cceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccc
Q 004860 465 --------LEG-----------LDW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 524 (727)
Q Consensus 465 --------~~~-----------~~l-~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 524 (727)
..+ ..+ ++||.+++||+++++.. ..+...+++++++|.||+||+++..+...+......
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 438 (666)
T PLN02614 360 KKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDML 438 (666)
T ss_pred HcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcC
Confidence 000 001 58999999999999875 445555656899999999999764433322222346
Q ss_pred cccccCCCCceEEEEC-CC--CCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCce
Q 004860 525 GAFSTATMTAGLVILD-EC--GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDI 596 (727)
Q Consensus 525 ~~iG~p~~~~~~~vld-~~--~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl 596 (727)
+++|+|+||++++|+| ++ ++++|.|+. |||+| +.||++ +++.|++.|. +| ||+|||+
T Consensus 439 gsvG~p~pg~evki~d~~~~~~~~~~~g~~--GEl~vrGp~v~~GY~~------~pe~T~~~f~-----dG--w~~TGDl 503 (666)
T PLN02614 439 GTVGPPVPNVDIRLESVPEMEYDALASTPR--GEICIRGKTLFSGYYK------REDLTKEVLI-----DG--WLHTGDV 503 (666)
T ss_pred CcccCcCCceEEEEeeecccCcccCCCCCC--ceEEEcCCcccccccC------CHHHhhhhhc-----cC--CcccceE
Confidence 7899999999999998 33 478899986 99998 345555 4456777773 13 9999999
Q ss_pred EEEecCceEEEEeecCCeeec-CceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCC---------
Q 004860 597 IKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF--------- 666 (727)
Q Consensus 597 ~~~~~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~--------- 666 (727)
|++|+||+|+|+||+||+||+ +|++|+|.|||++|. +||.|.+|+|++... . ..++|+|++....
T Consensus 504 g~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~-~~p~V~~~~V~g~~~---~-~~l~alvv~~~~~~~~~~~~~~ 578 (666)
T PLN02614 504 GEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYG-EVQAVDSVWVYGNSF---E-SFLVAIANPNQQILERWAAENG 578 (666)
T ss_pred EEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHh-cCCCeeEEEEEecCC---c-ceEEEEEeCCHHHHHHHHHhcC
Confidence 999999999999999999996 699999999999995 999999999998642 1 5799999986421
Q ss_pred -CCC------hHHHHHHHHHHH-----HhhcCCCcccceEEEcCC-C-----CCCCCchhhHHHHHHHHhhhhcc
Q 004860 667 -TSQ------PDKLKMIFSKAI-----QSKLNPLFKVSLVKVVPE-F-----PRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 667 -~~~------~~~l~~~l~~~l-----~~~L~~~~~P~~i~~v~~-l-----P~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
..+ ..++++.+.+.+ ++.|+.|.+++.|.++++ + -+||++|+.|+.+.+.|++.+++
T Consensus 579 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ 653 (666)
T PLN02614 579 VSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDE 653 (666)
T ss_pred CCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHH
Confidence 101 123444444433 467999999999998863 3 39999999999999999888764
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-65 Score=579.53 Aligned_cols=489 Identities=16% Similarity=0.220 Sum_probs=381.3
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+|+++|+++|+++.+.. ..+||+||+++++++|+.|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 23 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l 96 (540)
T PRK05857 23 QARQQPEAIALRRCDGT------SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMA 96 (540)
T ss_pred HHhhCCCcEEEeecCCC------ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEec
Confidence 34689999999865431 3799999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
+++++.+++.++++.++++++|+++........+. ..... ...+.+...... .. +.+.....
T Consensus 97 ~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~--------~~-~~~~~~~~---- 158 (540)
T PRK05857 97 DGNLPIAAIERFCQITDPAAALVAPGSKMASSAVP---EALHS--IPVIAVDIAAVT--------RE-SEHSLDAA---- 158 (540)
T ss_pred CccCCHHHHHHHHHhcCCceEEEeccchhcccccc---ccccc--cceeEeeccccc--------cc-cccccccc----
Confidence 99999999999999999999999876432111111 00000 011222111000 00 00000000
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhc----hhcCCCCCCEEEEecccccccchHHhHHhh
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW----AHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~----~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l 419 (727)
.........+++++|++|||||||.||||+++|+++.+...... ..++...+++++...|+.|+.+++..+.++
T Consensus 159 --~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l 236 (540)
T PRK05857 159 --SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCL 236 (540)
T ss_pred --ccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHh
Confidence 00111234668999999999999999999999999876543321 224566788999999999999998888999
Q ss_pred hcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCc
Q 004860 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (727)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (727)
+.|+++++. ..++..++++|+++++|+++++|++++.|.+.......+++++|.+++||++++....+++. .+ +++
T Consensus 237 ~~G~~~v~~--~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~-~~-g~~ 312 (540)
T PRK05857 237 MHGGLCVTG--GENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFIE-AT-GVR 312 (540)
T ss_pred hcceeEEec--CCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHHHH-Hh-CCe
Confidence 999998763 34667899999999999999999999999887655556789999999999999877765443 43 689
Q ss_pred ccccccccccccccccCCCCC----CccccccccCCCCceEEEECCCCCc-C-----CCCCCeeeeEEEe-----cccCC
Q 004860 500 IIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILDECGVP-Y-----PDDQPCVGEVGLF-----PLYLG 564 (727)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~vld~~~~~-~-----p~G~~giGel~v~-----~~y~~ 564 (727)
+++.||+||++.......... ....+++|+|++|++++|+|++++. + |.|+ +|||+|. .||++
T Consensus 313 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~--~Gel~v~g~~~~~GY~~ 390 (540)
T PRK05857 313 TAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSAS--FGTLWIKSPANMLGYWN 390 (540)
T ss_pred eecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCC--cceEEEeCcchhhhhhC
Confidence 999999999985433222111 1235789999999999999987763 3 3455 4999983 45555
Q ss_pred CCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEE
Q 004860 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644 (727)
Q Consensus 565 ~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv 644 (727)
+++.+.+.|. .| ||+|||+|++|+||++++.||.||+||++|++|+|.|||++|. .||+|.+|+|+
T Consensus 391 ------~~~~t~~~~~-----~g--~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~-~~~~V~~~~v~ 456 (540)
T PRK05857 391 ------NPERTAEVLI-----DG--WVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAE-GVSGVREAACY 456 (540)
T ss_pred ------CccchhhhcC-----CC--ceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHH-hCCCeeEEEEE
Confidence 3335555553 23 9999999999999999999999999999999999999999996 99999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCC-CChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 645 SVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 645 ~~~~~~~~~~~l~a~vv~~~~~~-~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
+.++...+ +.++++++..++.. ...+++.+.+++.+++.|++|++|..++++++||+|+|||+||++|++++.+.
T Consensus 457 ~~~~~~~~-~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~~ 532 (540)
T PRK05857 457 EIPDEEFG-ALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATAD 532 (540)
T ss_pred ecCccccc-cceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhhc
Confidence 99987776 78888888765322 12356788888888999999999999999999999999999999999988754
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=571.51 Aligned_cols=467 Identities=21% Similarity=0.223 Sum_probs=382.0
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
++++||++|+++.+. ++||+||.++++++|++|.+...+|++|+|+++|++++++++|||+++|++++|++|
T Consensus 11 a~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 82 (487)
T PRK07638 11 ASLQPNKIAIKENDR--------VLTYKDWFESVCKVANWLNEKESKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDI 82 (487)
T ss_pred HHhCCCCeEEecCCc--------EeeHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCc
Confidence 468999999998776 999999999999999999988348999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (727)
.++.+++.+++++++++++++++...... .. ....++.+. .+.+.......
T Consensus 83 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---------~~-~~~~~~~~~---------------~~~~~~~~~~~---- 133 (487)
T PRK07638 83 KWKQDELKERLAISNADMIVTERYKLNDL---------PD-EEGRVIEID---------------EWKRMIEKYLP---- 133 (487)
T ss_pred cCCHHHHHHHHHhCCCCEEEEecccccch---------hh-ccceEEEeh---------------hhhhhhhhccc----
Confidence 99999999999999999999987432111 00 001111110 11111111110
Q ss_pred CCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEE
Q 004860 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATL 425 (727)
Q Consensus 346 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~l 425 (727)
.........+++++|+|||||||.||||+++|++++..+......+++.++|+++...++.|+.+++.++.++..|+++
T Consensus 134 -~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~ 212 (487)
T PRK07638 134 -TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTV 212 (487)
T ss_pred -cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEE
Confidence 0111122357789999999999999999999999998888777788899999999999999998888888999999999
Q ss_pred EEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccccc
Q 004860 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (727)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (727)
++.+ ..++..+++.|+++++|++.++|+++..|.+... . ..+.+.++++|+.++++...++...+++++++|.||
T Consensus 213 ~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~-~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG 287 (487)
T PRK07638 213 HLMR-KFIPNQVLDKLETENISVMYTVPTMLESLYKENR---V-IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYG 287 (487)
T ss_pred EEcC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---c-CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEec
Confidence 9875 5688999999999999999999999999987632 2 345566788899999999999988888899999999
Q ss_pred ccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-----cccCCCCcccccccccccccc
Q 004860 506 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFR 580 (727)
Q Consensus 506 ~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~~~~~f~ 580 (727)
+||++..+...........+++|+|++++.++|+|++|+++|.|+. |||++. .||++++ ..+...+
T Consensus 288 ~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--Gel~v~~~~~~~gy~~~~------~~~~~~~- 358 (487)
T PRK07638 288 ASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEI--GTVYVKSPQFFMGYIIGG------VLARELN- 358 (487)
T ss_pred CCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCCC--eEEEEecccceeeecCCH------HHHhhhc-
Confidence 9999876544433333456789999999999999999999999986 999983 4454432 2222221
Q ss_pred ccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEE
Q 004860 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660 (727)
Q Consensus 581 ~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~v 660 (727)
...||+|||+|++|+||+++++||+||+||++|.+|+|.|||++|. .||+|.+++|++.+++..+ +.+++++
T Consensus 359 ------~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v 430 (487)
T PRK07638 359 ------ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLH-EHPAVDEIVVIGVPDSYWG-EKPVAII 430 (487)
T ss_pred ------cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHH-hCCCeeeEEEEecCchhcC-CeeEEEE
Confidence 1239999999999999999999999999999999999999999996 8999999999999988777 8888888
Q ss_pred EecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 661 v~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
+.. .+.++++ +.+++.|++|++|..++++++||+|++||++|++|++++.+.
T Consensus 431 ~~~----~~~~~l~----~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~ 482 (487)
T PRK07638 431 KGS----ATKQQLK----SFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQ 482 (487)
T ss_pred ECC----CCHHHHH----HHHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhcc
Confidence 742 3334444 456778899999999999999999999999999999887654
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-65 Score=569.39 Aligned_cols=475 Identities=21% Similarity=0.222 Sum_probs=390.4
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEee
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vp 262 (727)
+|+.+||++|+++.+. .+||+||.++++++|++|++ . +++|++|+++++|++++++++|||+++|++++|
T Consensus 11 ~a~~~p~~~a~~~~~~--------~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~ 82 (496)
T PRK06839 11 RAYLHPDRIAIITEEE--------EMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVP 82 (496)
T ss_pred HHHHCCCCeEEEECCc--------eEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 3478999999998766 99999999999999999986 6 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC-CcEEEEcCCCCCCCCCCCcCcccHHHHhcccCC
Q 004860 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (727)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (727)
+++.++.+++..++++++++++++++.... ....+..... ...+.+. ++.+.......
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 141 (496)
T PRK06839 83 LNIRLTENELIFQLKDSGTTVLFVEKTFQN------MALSMQKVSYVQRVISIT---------------SLKEIEDRKID 141 (496)
T ss_pred cCcccCHHHHHHHHHhcCceEEEEcHHHHH------HHHHhhhccCcceEEEec---------------chHhhhccCCC
Confidence 999999999999999999999999875421 1111111111 1111111 12222221111
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchH-HhHHhhh
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFL 420 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~ 420 (727)
......++++++++|||||||.||+|+++|+++..........+++.++|++++.+|+.|..++. .++.++.
T Consensus 142 -------~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~ 214 (496)
T PRK06839 142 -------NFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLF 214 (496)
T ss_pred -------CCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHh
Confidence 11233568999999999999999999999999877666666677899999999999999998874 4578899
Q ss_pred cCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
.|+++++.+ ..++..++++++++++|++.++|++++.|+........+++++|.+++||+++++...+++... ++++
T Consensus 215 ~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~ 291 (496)
T PRK06839 215 AGGVIIVPR-KFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLF 291 (496)
T ss_pred cCcEEEEcc-CCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCee
Confidence 999998865 5688899999999999999999999999998766556678999999999999999998888765 6889
Q ss_pred cccccccccccccccCCC-CCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-----cccCCCCcccccccc
Q 004860 501 IESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADH 574 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~ 574 (727)
++.||+||++.+++.... ......+++|+|++++.++|+|++++++|.|+. |||+|. .||++. ++.
T Consensus 292 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~~------~~~ 363 (496)
T PRK06839 292 GQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEV--GELLIRGPNVMKEYWNR------PDA 363 (496)
T ss_pred EeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCc--eEEEEECCCcchhhcCC------hHH
Confidence 999999999864433322 223446789999999999999999999999986 999983 455543 233
Q ss_pred ccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCce
Q 004860 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (727)
Q Consensus 575 ~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~ 654 (727)
+...+. +| ||+|||+|++++||++++.||.||+||++|.+|+|.|||++|. .+|+|.+++|++.+++..+ +
T Consensus 364 ~~~~~~-----~g--~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~ 434 (496)
T PRK06839 364 TEETIQ-----DG--WLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVIN-KLSDVYEVAVVGRQHVKWG-E 434 (496)
T ss_pred HHHHHc-----CC--CeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccccccC-c
Confidence 333332 12 8999999999999999999999999999999999999999996 8999999999999998887 8
Q ss_pred EEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhh
Q 004860 655 VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 719 (727)
.++++|+++++...+.+++ ++++++.|++|++|..|++++++|+|+|||++|++|+++.++
T Consensus 435 ~~~~~v~~~~~~~~~~~~l----~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~~ 495 (496)
T PRK06839 435 IPIAFIVKKSSSVLIEKDV----IEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKS 495 (496)
T ss_pred eEEEEEEECCCCCCCHHHH----HHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhhc
Confidence 9999999987665555544 445778899999999999999999999999999999988754
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=578.08 Aligned_cols=471 Identities=18% Similarity=0.138 Sum_probs=362.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
++++|+++|+++.+. +.++++||+||+++++++|++|.++ ++||+|+|+++|++++++++|||+++|++++ ++|
T Consensus 12 ~~~~~~~~a~~~~~~----~~~~~~ty~el~~~~~~lA~~L~~~-~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~-~~~ 85 (525)
T PRK05851 12 MTASGRDLVVLDRES----GLWRRHPWPEVHGRAENVAARLLDR-DRPGAVGLVGEPTVELVAAIQGAWLAGAAVS-ILP 85 (525)
T ss_pred hcCCCCceEEeCCCC----CcceeecHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCc-CCC
Confidence 478899999998653 2456999999999999999999988 8999999999999999999999999999865 444
Q ss_pred C--------CCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhc
Q 004860 266 S--------FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (727)
Q Consensus 266 ~--------~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 337 (727)
. ...+++.+++++++++++|+++... ..+..... . +.+. ++.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~-~-~~~~---------------~~~~~~~ 139 (525)
T PRK05851 86 GPVRGADDGRWADATLTRFAGIGVRTVLSHGSHL---------ERLRAVDS-S-VTVH---------------DLATAAH 139 (525)
T ss_pred CCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHH---------HHHHHhhc-c-cccc---------------ccccccc
Confidence 2 2335666789999999999986432 11111100 0 0000 0000000
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCC-CCCEEEEecccccccchHHhH
Q 004860 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK-VGDVYCWPTNLGWVMGPVILF 416 (727)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~d~~l~~~~~~~~~~~~~~~ 416 (727)
.. . . .......+++++||+|||||||.||||+++|+++++.+.+....++++ ++|++++.+|++|+++++.++
T Consensus 140 ~~-~---~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 213 (525)
T PRK05851 140 TN-R---S--ASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLL 213 (525)
T ss_pred cc-c---c--ccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHH
Confidence 00 0 0 001123578999999999999999999999999999888887888898 999999999999999998889
Q ss_pred HhhhcCcEEEEecCC-C--ChhhHHHHHHHhCCCEEEechHHHHHHHhcC-CCCCCCccceeEEEeecCCCChhhHHHHH
Q 004860 417 SSFLNGATLALYQGS-P--LERSFGKFVQDAGVTVLGTVPSLVKAWRNTN-CLEGLDWTKIRSFASTGETSNVDDDLWLS 492 (727)
Q Consensus 417 ~~l~~G~~lv~~~~~-~--~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~-~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~ 492 (727)
.+++.|+++++.+.. + ++..+++.++++++|++..+|.++..+.... .....++++||.+++||+++++++.+++.
T Consensus 214 ~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~ 293 (525)
T PRK05851 214 TAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFA 293 (525)
T ss_pred HHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHH
Confidence 999999999997631 2 5678999999999998866666555554322 12345678999999999999999888776
Q ss_pred hhC-----CCCcccccccccccccccccCCCC--------------CCccccccccCCCCceEEEECCCC-CcCCCCCCe
Q 004860 493 SKA-----WYNAIIESCGGTELSSAYIQGSLL--------------QPQAFGAFSTATMTAGLVILDECG-VPYPDDQPC 552 (727)
Q Consensus 493 ~~~-----~~~~l~n~YG~TE~~~~~~~~~~~--------------~~~~~~~iG~p~~~~~~~vld~~~-~~~p~G~~g 552 (727)
+.+ +..+++|.||+||+++.++...+. .....+++|+|++|++++|+|+++ .++|.|+.
T Consensus 294 ~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~- 372 (525)
T PRK05851 294 TAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREI- 372 (525)
T ss_pred HHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCe-
Confidence 532 224599999999998655432211 012346899999999999999776 46899985
Q ss_pred eeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHH
Q 004860 553 VGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (727)
Q Consensus 553 iGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (727)
|||++ +.||++.+. . ...+||+|||+|+++ +|+|+|+||+||+||++|+||+|.||
T Consensus 373 -GEl~v~g~~~~~GY~~~~~------~-----------~~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eI 433 (525)
T PRK05851 373 -GEIEIRGASMMSGYLGQAP------I-----------DPDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEI 433 (525)
T ss_pred -EEEEEecCchhhccccCCc------c-----------CCCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHH
Confidence 99998 345555321 1 112399999999986 89999999999999999999999999
Q ss_pred HHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcC--CCCCCCC
Q 004860 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTAS 705 (727)
Q Consensus 628 E~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~--~lP~t~~ 705 (727)
|++|. +||+|.+|+|++.+++..+ +.+.++|+... ...+.++++++++++|...+ +++|..+++++ +||+|+|
T Consensus 434 E~~l~-~~p~V~~~~vv~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~~~~~~~l~~~l--~~~P~~~~~v~~~~lP~t~~ 508 (525)
T PRK05851 434 ERVAA-QVRGVREGAVVAVGTGEGS-ARPGLVIAAEF-RGPDEAGARSEVVQRVASEC--GVVPSDVVFVAPGSLPRTSS 508 (525)
T ss_pred HHHHH-hCCCcccceEEEEEecCCC-CceeEEEEEEe-cCcchHHHHHHHHHHHHHHh--CCCccEEEEECCCCcCcCcc
Confidence 99995 8999999999999887777 67777766542 12344667777777776655 38999999998 8999999
Q ss_pred chhhHHHHHHHHhh
Q 004860 706 NKLLRRVLRDQIKH 719 (727)
Q Consensus 706 GKvdR~~L~~~~~~ 719 (727)
|||+|++|++.+++
T Consensus 509 GKi~r~~L~~~~~~ 522 (525)
T PRK05851 509 GKLRRLAVKRSLEA 522 (525)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999998764
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=570.16 Aligned_cols=491 Identities=22% Similarity=0.249 Sum_probs=400.2
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
+++|+++|+.+.++ .+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+++
T Consensus 11 ~~~p~~~a~~~~~~--------~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 82 (515)
T TIGR03098 11 ARLPDATALVHHDR--------TLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINP 82 (515)
T ss_pred HHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCC
Confidence 67999999998776 999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
.++.+++..+++.++++++++++... +.........+. ..+.+...... .........|+++......
T Consensus 83 ~~~~~~~~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-- 152 (515)
T TIGR03098 83 LLKAEQVAHILADCNVRLLVTSSERL------DLLHPALPGCHDLRTLILVGEPAHA--SEGGGESPSWPKLLALGDA-- 152 (515)
T ss_pred CCCHHHHHHHHHcCCCeEEEEccchh------hhhHhhhhcccccceEEEecCcccc--cCCccccccHHHhhccccc--
Confidence 99999999999999999999986432 111111112111 22233221111 1112233456665443221
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCc
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (727)
........+++++++|||||||.||||++||+++...+......+++.++|++++..|++|++++..++.++..|+
T Consensus 153 ----~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 228 (515)
T TIGR03098 153 ----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGA 228 (515)
T ss_pred ----cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCC
Confidence 1222335688999999999999999999999999988887777788999999999999999999988899999999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccc
Q 004860 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (727)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (727)
++++.+ ..++..+++.++++++|++.++|+++..|.+... ...+++++|.+++||+++++.+.+.+.+.++++.+++.
T Consensus 229 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 306 (515)
T TIGR03098 229 TVVLHD-YLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLM 306 (515)
T ss_pred EEEEcC-CCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeee
Confidence 999886 4678899999999999999999999999987532 22457899999999999999999999888877889999
Q ss_pred ccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCcccccccccccc
Q 004860 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (727)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~ 578 (727)
||+||++..............+++|+|++++.++|+|+++++++.|+. ||+++ ..||++.+ +.+...
T Consensus 307 YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~--Gel~v~g~~~~~gy~~~~------~~~~~~ 378 (515)
T TIGR03098 307 YGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEE--GELVHRGALVAMGYWNDP------EKTAER 378 (515)
T ss_pred eccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCCCCCc--eEEEEcCchhhccccCCc------hhhhhh
Confidence 999998754333222223456789999999999999999999999985 99998 46666643 344555
Q ss_pred cccccc-----CCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCc
Q 004860 579 FRGMPM-----YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (727)
Q Consensus 579 f~~~p~-----~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~ 653 (727)
|...+. ..+.+||+|||+|++++||++++.||.||+||++|.+|+|.|||++|. .||.|.+++|++.+++..+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g- 456 (515)
T TIGR03098 379 FRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAY-ATGLVAEAVAFGVPDPTLG- 456 (515)
T ss_pred hhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHh-cCCCeeEEEEEeccCcccC-
Confidence 554332 123458999999999999999999999999999999999999999996 9999999999999998888
Q ss_pred eEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHH
Q 004860 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715 (727)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 715 (727)
+.++++++...+...+.+++.+ .++++|+++++|..++++++||+|++||++|++|++
T Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~----~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 457 QAIVLVVTPPGGEELDRAALLA----ECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred ceEEEEEEeCCCCCCCHHHHHH----HHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 8999999876655555555544 577789999999999999999999999999999974
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=578.21 Aligned_cols=499 Identities=21% Similarity=0.248 Sum_probs=395.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+. .+||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 42 ~~~~p~~~a~~~~~~--------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~ 113 (573)
T PRK05605 42 VARFGDRPALDFFGA--------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHN 113 (573)
T ss_pred HHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecC
Confidence 368999999999766 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCc-EEEEcCCCCCC--------------------CC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDV--------------------GI 323 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~--------------------~~ 323 (727)
|.++.+++.+++++++++++|+++.... ....+.+..... ++.+....... ..
T Consensus 114 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (573)
T PRK05605 114 PLYTAHELEHPFEDHGARVAIVWDKVAP------TVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALT 187 (573)
T ss_pred cCCCHHHHHHHHhccCCcEEEechhhHH------HHHhhhhccccceeEeeecccccccccccccccccccccccccccc
Confidence 9999999999999999999999775321 111111111111 11111000000 00
Q ss_pred CCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcC-C-CCCCEEE
Q 004860 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-L-KVGDVYC 401 (727)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~-~-~~~d~~l 401 (727)
....+..+|.++......... .........++++++++|||||||.||+|+++|+++...+......+. + ..+++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 266 (573)
T PRK05605 188 GPAPGTVPWETLVDAAIGGDG-SDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVL 266 (573)
T ss_pred cCCCcceeHHHHhhccccccc-cccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEE
Confidence 001233456665543221000 001122346789999999999999999999999998877654433222 2 3478999
Q ss_pred Eecccccccch-HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeec
Q 004860 402 WPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (727)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gG 480 (727)
+..|+.|..++ ..++.++..|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++||
T Consensus 267 ~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg 345 (573)
T PRK05605 267 AALPMFHAYGLTLCLTLAVSIGGELVLLP-APDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGA 345 (573)
T ss_pred EecChHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECC
Confidence 99999988876 44667899999999876 45788999999999999999999999999987665666789999999999
Q ss_pred CCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCC--CCcCCCCCCeeeeEEE
Q 004860 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC--GVPYPDDQPCVGEVGL 558 (727)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~--~~~~p~G~~giGel~v 558 (727)
++++++..+++.+.+ ++++++.||+||+++++...........+++|+|++++.++|+|++ ++++|.|.. |||++
T Consensus 346 ~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~--Gel~v 422 (573)
T PRK05605 346 MALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEE--GELLV 422 (573)
T ss_pred CcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCe--eEEEE
Confidence 999999988887655 5789999999999876554443333445789999999999999976 588999985 99998
Q ss_pred e-----cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhh
Q 004860 559 F-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (727)
Q Consensus 559 ~-----~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~ 633 (727)
. .||++ +++.++..|. .| ||+|||+|+++++|+++++||.||+||++|++|+|.|||+++.
T Consensus 423 ~~~~~~~gy~~------~~~~~~~~~~-----~g--~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~- 488 (573)
T PRK05605 423 RGPQVFKGYWN------RPEETAKSFL-----DG--WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLR- 488 (573)
T ss_pred ecCchhhhhcC------ChhHhhhccc-----CC--CcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHH-
Confidence 3 34444 3334554553 23 9999999999999999999999999999999999999999996
Q ss_pred cCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHH
Q 004860 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 713 (727)
Q Consensus 634 ~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L 713 (727)
.||.|.+++|++.++...+ +.+++++++.++...+.++ +++.+++.|++|++|..|+++++||+|++||++|++|
T Consensus 489 ~~~~i~~~~v~~~~~~~~~-~~~~~~vv~~~~~~~~~~~----l~~~~~~~l~~~~~p~~i~~~~~iP~t~~GKi~r~~L 563 (573)
T PRK05605 489 EHPGVEDAAVVGLPREDGS-EEVVAAVVLEPGAALDPEG----LRAYCREHLTRYKVPRRFYHVDELPRDQLGKVRRREV 563 (573)
T ss_pred hCcccceEEEEeeecccCC-eEEEEEEEECCCCCCCHHH----HHHHHHHhCccccCCcEEEEeccCCCCCcccccHHHH
Confidence 9999999999999888777 8999999998775555544 4455778899999999999999999999999999999
Q ss_pred HHHHhhhhc
Q 004860 714 RDQIKHELS 722 (727)
Q Consensus 714 ~~~~~~~~~ 722 (727)
++++.+++.
T Consensus 564 ~~~~~~~~~ 572 (573)
T PRK05605 564 REELLEKLG 572 (573)
T ss_pred HHHHHHHhc
Confidence 999977654
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-65 Score=586.42 Aligned_cols=490 Identities=19% Similarity=0.195 Sum_probs=376.2
Q ss_pred CCCCCceEEEEecCC-CCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec-C
Q 004860 187 RKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI-A 264 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl-~ 264 (727)
+.+||++|+++.+.. ...+..+.+||+||+++++++|++|.+.+++||+|+|+++|++++++++|||+++|++++|+ +
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~ 111 (631)
T PRK07769 32 KVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQVTKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFD 111 (631)
T ss_pred HhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCC
Confidence 578999999985421 01123458999999999999999998669999999999999999999999999999999999 5
Q ss_pred CCCC--HHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC----CcEEEEcCCCCCCCCCCCcCcccHHHHhcc
Q 004860 265 DSFA--AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (727)
Q Consensus 265 p~~~--~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (727)
+..+ .+++.+++++++++++|+++.... .........+ ..++.+... .+..
T Consensus 112 ~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-- 168 (631)
T PRK07769 112 PAEPGHVGRLHAVLDDCTPSAILTTTDSAE------GVRKFFRARPAKERPRVIAVDAV---------------PDEV-- 168 (631)
T ss_pred CCccchHHHHHHHHHhCCCCEEEEChHHHH------HHHHHHhhccccccceEEEcccc---------------cccc--
Confidence 6665 688999999999999999875321 1111111111 111111100 0000
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHh
Q 004860 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (727)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (727)
.. ........++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|++++..++.+
T Consensus 169 -~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~ 242 (631)
T PRK07769 169 -GA-----TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLP 242 (631)
T ss_pred -cc-----ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHH
Confidence 00 001113457899999999999999999999999998888777777889999999999999999999878888
Q ss_pred hhcCcEEEEecC-CC--ChhhHHHHHHHhCC---CEEEechHHHHHHHhc---CC--CCCCCccceeEEEeecCCCChhh
Q 004860 419 FLNGATLALYQG-SP--LERSFGKFVQDAGV---TVLGTVPSLVKAWRNT---NC--LEGLDWTKIRSFASTGETSNVDD 487 (727)
Q Consensus 419 l~~G~~lv~~~~-~~--~~~~l~~~i~~~~v---t~l~~~P~~l~~l~~~---~~--~~~~~l~~Lr~i~~gGe~l~~~~ 487 (727)
++.|+++++.++ .. ++..+++.+.++++ +++..+|+++..+... .. ....++++||.+++||++++++.
T Consensus 243 ~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~ 322 (631)
T PRK07769 243 ALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPAS 322 (631)
T ss_pred HhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHH
Confidence 889999998854 22 77889999999886 7899999988776542 11 12457899999999999999999
Q ss_pred HHHHHhhCC-----CCcccccccccccccccccCCCCCC--------------------------ccccccccCCCCceE
Q 004860 488 DLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP--------------------------QAFGAFSTATMTAGL 536 (727)
Q Consensus 488 ~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~--------------------------~~~~~iG~p~~~~~~ 536 (727)
.+++.+.++ ...++|.||+||++..++....... ....++|+|+++..+
T Consensus 323 ~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~ 402 (631)
T PRK07769 323 MRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWA 402 (631)
T ss_pred HHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEE
Confidence 888887652 2469999999998765443221110 012478999999999
Q ss_pred EEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCcccccccccccccccccc-----------CCCceeeeeCceEEE
Q 004860 537 VILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM-----------YKGMCLRRHGDIIKR 599 (727)
Q Consensus 537 ~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~-----------~~g~~~yrTGDl~~~ 599 (727)
+|+| ++++++|.|+. |||++ +.||++ +++.+++.|...+. ..+.+||||||+|++
T Consensus 403 ~ivd~~~g~~~~~ge~--GEl~v~gp~v~~GY~~------~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~ 474 (631)
T PRK07769 403 VIVDPETASELPDGQI--GEIWLHGNNIGTGYWG------KPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVY 474 (631)
T ss_pred EEEcCCCCcCCCCCCE--EEEEecCCCccccccC------ChhHHHHHHhhhcccccccccccCcccCCCeeeccccccE
Confidence 9999 57999999985 99998 355665 34466666753210 123469999999999
Q ss_pred ecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCcee--eEEEeecC-------------------CCCCceEEEE
Q 004860 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE--TAAISVSP-------------------AGGGPEVLVI 658 (727)
Q Consensus 600 ~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~--a~vv~~~~-------------------~~~~~~~l~a 658 (727)
+ ||+|+|+||+||+||++|+||+|.|||++|.+.||.|.+ ++|+++++ +..+ +.+++
T Consensus 475 ~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~g-e~~~a 552 (631)
T PRK07769 475 F-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTS-EQLVI 552 (631)
T ss_pred E-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCC-ccEEE
Confidence 5 999999999999999999999999999999634899998 88999888 4466 89999
Q ss_pred EEEecCCC-CCChHHHHHHHHHHHHhhcCC-Cc-ccceEEEcC--CCCCCCCchhhHHHHHHHHhh
Q 004860 659 FVVLKKGF-TSQPDKLKMIFSKAIQSKLNP-LF-KVSLVKVVP--EFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 659 ~vv~~~~~-~~~~~~l~~~l~~~l~~~L~~-~~-~P~~i~~v~--~lP~t~~GKvdR~~L~~~~~~ 719 (727)
+|+++++. ..+.+++.++++++ |+. |+ .|..+++++ +||+|++|||+|++|++.+.+
T Consensus 553 ~v~~~~~~~~~~~~~l~~~~~~~----l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~ 614 (631)
T PRK07769 553 VAERAPGAHKLDPQPIADDIRAA----IAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLD 614 (631)
T ss_pred EEEecCccccccHHHHHHHHHHH----HHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHc
Confidence 99988763 45666677665554 443 45 377888886 799999999999999998754
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=575.56 Aligned_cols=507 Identities=20% Similarity=0.219 Sum_probs=403.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+.+ +.+||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 26 ~~~~~~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 99 (559)
T PRK08315 26 AARYPDREALVYRDQG------LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTIN 99 (559)
T ss_pred HHHCCCCeEEEEcCCC------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEecC
Confidence 4689999999985431 3799999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhC-------------CCcEEEEcCCCCCCCCCCCcCccc
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-------------PLKAIVLPAIGNDVGIPLREQDLS 331 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~ 331 (727)
|.++.+++..++++++++++++++..... ............. +....++..... ...+...
T Consensus 100 ~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 173 (559)
T PRK08315 100 PAYRLSELEYALNQSGCKALIAADGFKDS-DYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE-----KHPGMLN 173 (559)
T ss_pred ccCCHHHHHHHHHhcCCCEEEEecccccc-chHHHHHHhhhhhhcccccccccccCCCceeEEeeccc-----CCccccc
Confidence 99999999999999999999998753211 0000011110100 100011110100 0112345
Q ss_pred HHHHhcccCCCC-CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEeccccccc
Q 004860 332 WKDFLSSVDYHP-RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVM 410 (727)
Q Consensus 332 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 410 (727)
|.++........ ...........+++++|++|||||||.||||.++|++++..+......++++++|+++...|+.|..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 253 (559)
T PRK08315 174 FDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCF 253 (559)
T ss_pred HHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHH
Confidence 555543321100 0001112234568899999999999999999999999998888877888999999999999999888
Q ss_pred ch-HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHH
Q 004860 411 GP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDL 489 (727)
Q Consensus 411 ~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~ 489 (727)
+. +.++.++..|+++++.....++..+++.++++++|++.++|+++..++........++++||.+++||++++++..+
T Consensus 254 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~~~~~ 333 (559)
T PRK08315 254 GMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPIEVMK 333 (559)
T ss_pred HHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCHHHHH
Confidence 87 55788999999999776667888999999999999999999999998877655556789999999999999999988
Q ss_pred HHHhhCCCCcccccccccccccccccCCCCC--CccccccccCCCCceEEEECCC-CCcCCCCCCeeeeEEE-----ecc
Q 004860 490 WLSSKAWYNAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-----FPL 561 (727)
Q Consensus 490 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~~~~~~~vld~~-~~~~p~G~~giGel~v-----~~~ 561 (727)
.+.+.++..+++|.||+||++.+++...... .....++|+|++++.++|+|++ ++++|.|+. |||+| ..|
T Consensus 334 ~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~--GEl~v~g~~~~~g 411 (559)
T PRK08315 334 RVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQ--GELCTRGYSVMKG 411 (559)
T ss_pred HHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCc--eEEEEECchhhhh
Confidence 8888876667999999999986544333222 2345789999999999999988 999999996 99998 356
Q ss_pred cCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceee
Q 004860 562 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILET 641 (727)
Q Consensus 562 y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a 641 (727)
|++.+ +.++..|.. ..||+|||+|++++||+++|+||.||+||++|++|+|.|||++|. .+|+|.++
T Consensus 412 y~~~~------~~~~~~~~~------~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~-~~~~v~~~ 478 (559)
T PRK08315 412 YWNDP------EKTAEAIDA------DGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLY-THPKIQDV 478 (559)
T ss_pred hcCCh------hHHhhcCCC------CCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHH-hCCCceEE
Confidence 66533 344444422 239999999999999999999999999999999999999999996 89999999
Q ss_pred EEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhh
Q 004860 642 AAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721 (727)
Q Consensus 642 ~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 721 (727)
+|++.+++..+ +.++++|++..+...+.+++++ .+++.||.|++|..++++++||+|+|||++|++|++++....
T Consensus 479 ~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~----~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~~ 553 (559)
T PRK08315 479 QVVGVPDEKYG-EEVCAWIILRPGATLTEEDVRD----FCRGKIAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEEL 553 (559)
T ss_pred EEEecCCCCCC-eEEEEEEEeCCCCCCCHHHHHH----HHHhhcccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhhh
Confidence 99999888766 8899999987765555555544 577889999999999999999999999999999999987766
Q ss_pred ccc
Q 004860 722 SVR 724 (727)
Q Consensus 722 ~~~ 724 (727)
..+
T Consensus 554 ~~~ 556 (559)
T PRK08315 554 GLQ 556 (559)
T ss_pred chh
Confidence 544
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-64 Score=570.71 Aligned_cols=494 Identities=20% Similarity=0.231 Sum_probs=389.5
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
..+|+++++.+... +..+.+||.||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++|
T Consensus 21 ~~~~~~~~~~~~~~----~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 96 (539)
T PRK07008 21 RHAGDTEIVSRRVE----GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINP 96 (539)
T ss_pred hhCCCceEEEeecc----CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccc
Confidence 67788888775321 1235899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCc-E-EEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-A-IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
.++.+++.++++++++++++++..+. +....+....... . +.+..... .... .....+|+++......
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~~~-- 166 (539)
T PRK07008 97 RLFPEQIAYIVNHAEDRYVLFDLTFL------PLVDALAPQCPNVKGWVAMTDAAH-LPAG-STPLLCYETLVGAQDG-- 166 (539)
T ss_pred ccCHHHHHHHHhccCCcEEEEcchhH------HHHHHHHhhCCCceEEEEEccCCc-cccC-CcccccHHHHhcccCC--
Confidence 99999999999999999999987542 1122222222221 1 22221111 0000 1124556666543221
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHH--HhhchhcCCCCCCEEEEecccccccchHHhHHhhhc
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT--AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (727)
........++++++++|||||||.||||++||++++... ......+++.++|++++..|++|..+...++.++..
T Consensus 167 ---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~ 243 (539)
T PRK07008 167 ---DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLT 243 (539)
T ss_pred ---CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhc
Confidence 111223467889999999999999999999999986433 233346788899999999999887776556788999
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
|+++++.+...++..+++.++++++|++.++|+++..|++.......++++||.+++||+++++.+..++.+.+ +++++
T Consensus 244 G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~ 322 (539)
T PRK07008 244 GAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVI 322 (539)
T ss_pred CceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHh-CCcee
Confidence 99999987667888999999999999999999999999887655556788999999999999999998887766 68999
Q ss_pred ccccccccccccccCCCC------CC----ccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-----cccCCCC
Q 004860 502 ESCGGTELSSAYIQGSLL------QP----QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGAS 566 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~------~~----~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~ 566 (727)
+.||+||++...+..... .+ ....++|+|++++.++|+|++++++|.+...+|||++. .||++.+
T Consensus 323 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~ 402 (539)
T PRK07008 323 HAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGD 402 (539)
T ss_pred cccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCccchhhcCCh
Confidence 999999998644332211 00 11357899999999999999999998653225999984 4555432
Q ss_pred ccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEee
Q 004860 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646 (727)
Q Consensus 567 ~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~ 646 (727)
. .|+..| ||+|||+|++++||+++++||+||+||++|++|+|.|||++|. .||.|.+++|++.
T Consensus 403 ~--------------~~~~~g--~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~v~~~~v~~~ 465 (539)
T PRK07008 403 A--------------SPLVDG--WFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAV-AHPAVAEAACIAC 465 (539)
T ss_pred h--------------hhhcCC--CcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHH-hCCceeEEEEEec
Confidence 1 122223 9999999999999999999999999999999999999999995 9999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 647 ~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
++...+ +.++++|+..++...+.+++++ +++++|++|++|..|+++++||+|+|||++|++|++++.+-
T Consensus 466 ~~~~~~-~~~~~~v~~~~~~~~~~~~l~~----~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~~ 534 (539)
T PRK07008 466 AHPKWD-ERPLLVVVKRPGAEVTREELLA----FYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRDY 534 (539)
T ss_pred CCchhc-cceEEEEEeCCCCccCHHHHHH----HHHhhcccccCCeEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence 988777 7889998887765555555544 56778899999999999999999999999999999988653
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-64 Score=573.48 Aligned_cols=505 Identities=19% Similarity=0.217 Sum_probs=401.5
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
+++|+++|+++.+.+ ..+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++|
T Consensus 29 ~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l~~ 102 (558)
T PRK12583 29 ARFPDREALVVRHQA------LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINP 102 (558)
T ss_pred HHCCCCeEEEecCCC------cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEecCC
Confidence 689999999885431 2899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhh-------------CCCcEEEEcCCCCCCCCCCCcCcccH
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------------APLKAIVLPAIGNDVGIPLREQDLSW 332 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~~~ 332 (727)
.++.+++.+++++++++++|+++..... +........... .+....++..... .......|
T Consensus 103 ~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 176 (558)
T PRK12583 103 AYRASELEYALGQSGVRWVICADAFKTS-DYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA-----PPPGFLAW 176 (558)
T ss_pred CCCHHHHHHHHHhcCCcEEEEecccccc-chhHHHHHHhhhhccccccccccccCCcceEEEEecCC-----CCccccch
Confidence 9999999999999999999998753211 111111111111 1111111111110 01122345
Q ss_pred HHHhcccCCCCC-CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccc
Q 004860 333 KDFLSSVDYHPR-PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 411 (727)
Q Consensus 333 ~~~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 411 (727)
++.......... ..........++++++++|||||||.||||.++|+++.+.+......+++.++|++++..|+.|..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 256 (558)
T PRK12583 177 HELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFG 256 (558)
T ss_pred HhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhh
Confidence 544332211000 0011112345788999999999999999999999999988887777889999999999999999988
Q ss_pred h-HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHH
Q 004860 412 P-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLW 490 (727)
Q Consensus 412 ~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~ 490 (727)
. +.++.++..|+++++.....++..+++.|+++++|++.++|+++..++........++++||.+++||++++++..++
T Consensus 257 ~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~ 336 (558)
T PRK12583 257 MVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRR 336 (558)
T ss_pred HHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCHHHHHH
Confidence 7 557888999999988766678889999999999999999999998888765545567899999999999999999999
Q ss_pred HHhhCCCCcccccccccccccccccCCCC--CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccC
Q 004860 491 LSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYL 563 (727)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~ 563 (727)
+.+.++...+++.||+||++.+.+..... ......++|+|++++.++|+|+++++++.|+. |||++ ..||+
T Consensus 337 ~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~gy~ 414 (558)
T PRK12583 337 VMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEI--GELCTRGYSVMKGYW 414 (558)
T ss_pred HHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCCe--eEEEEEeCccchhhc
Confidence 88888777899999999999765443321 12345789999999999999999999999985 99988 34555
Q ss_pred CCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEE
Q 004860 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 643 (727)
Q Consensus 564 ~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~v 643 (727)
+. +..+...|. ...||+|||+|++++||++++.||.||+||++|.+|+|.|||++|. .+|+|.+++|
T Consensus 415 ~~------~~~~~~~~~------~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v 481 (558)
T PRK12583 415 NN------PEATAESID------EDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLF-THPAVADVQV 481 (558)
T ss_pred CC------hHHHHhhcC------CCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHH-hCCCeeEEEE
Confidence 43 223333342 1239999999999999999999999999999999999999999996 8999999999
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhcc
Q 004860 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 644 v~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
++.++...+ +.++++++..++...+..++ ++.++++|++|++|..++++++||+|++||++|+.|+++..++++.
T Consensus 482 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~i----~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~~~~ 556 (558)
T PRK12583 482 FGVPDEKYG-EEIVAWVRLHPGHAASEEEL----REFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEELAL 556 (558)
T ss_pred EeeecCCCC-cEEEEEEEECCCCCCCHHHH----HHHHHhhcccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhhcCC
Confidence 999988777 89999999887655554444 4457788999999999999999999999999999999998877654
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=571.28 Aligned_cols=508 Identities=20% Similarity=0.220 Sum_probs=390.0
Q ss_pred CcCCCCcccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 004860 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (727)
Q Consensus 166 ~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~ 244 (727)
.|......+.....+.+. ++++||++|+++.+. .+.+||+||.++++++|++|.+. +++||+|+|+++|++
T Consensus 8 ~~~~~~~~~~l~~~l~~~--a~~~p~~~ai~~~~~------~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~ 79 (534)
T PRK05852 8 APMASDFGPRIADLVEVA--ATRLPEAPALVVTAD------RIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNA 79 (534)
T ss_pred cchhhhhcccHHHHHHHH--HHhCCCCcEEEecCC------CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcH
Confidence 443333333333444433 368999999987543 13799999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCC
Q 004860 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 324 (727)
Q Consensus 245 ~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 324 (727)
++++++|||+++|++++|++|.++.+++.+++++++++++|+++....... ....... ...+.+......
T Consensus 80 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~---- 149 (534)
T PRK05852 80 EFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRA-----EPTTRWW-PLTVNVGGDSGP---- 149 (534)
T ss_pred HHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhc-----ccccccc-ceeeeecccccc----
Confidence 999999999999999999999999999999999999999998764211000 0000000 111111111000
Q ss_pred CCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEec
Q 004860 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT 404 (727)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~ 404 (727)
....... ........ .. ........++++++++|||||||.||||+++|+++.+.+......+++.++|++++..
T Consensus 150 -~~~~~~~-~~~~~~~~--~~-~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 224 (534)
T PRK05852 150 -SGGTLSV-HLDAATEP--TP-ATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVM 224 (534)
T ss_pred -ccccccc-ccccccCC--Cc-cccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEec
Confidence 0000000 00000000 00 0011112246789999999999999999999999998888887888999999999999
Q ss_pred ccccccchH-HhHHhhhcCcEEEEecC-CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCC--CCCccceeEEEeec
Q 004860 405 NLGWVMGPV-ILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTG 480 (727)
Q Consensus 405 ~~~~~~~~~-~~~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~Lr~i~~gG 480 (727)
|+.|..++. .++.++..|+++++.+. ..++..+++.|+++++|++.++|+++..|.+..... ..+++++|.++++|
T Consensus 225 p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G 304 (534)
T PRK05852 225 PLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCS 304 (534)
T ss_pred CcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECC
Confidence 999998884 47888999999888653 456789999999999999999999999998754321 23568999999999
Q ss_pred CCCChhhHHHHHhhCCCCcccccccccccccccccCCCC------C-CccccccccCCCCceEEEECCCCCcCCCCCCee
Q 004860 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL------Q-PQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553 (727)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~------~-~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~gi 553 (727)
+++++...+++.+.+ ++++++.||+||++..++..... . ....+..|+ .++++++|+|++|+++|.|+.
T Consensus 305 ~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d~~g~~~~~g~~-- 380 (534)
T PRK05852 305 APLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVGSDGLPLPAGAV-- 380 (534)
T ss_pred CCCCHHHHHHHHHHh-CCChhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEECCCCCCCCCCCc--
Confidence 999999988888776 57899999999998755433221 0 112233444 699999999999999999986
Q ss_pred eeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHH
Q 004860 554 GEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628 (727)
Q Consensus 554 Gel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE 628 (727)
|||++ ..||++. ++.+++.|. .| ||+|||+|++|+||++++.||+||+||++|.+|+|.|||
T Consensus 381 Gel~v~g~~v~~gY~~~------~~~t~~~~~-----~g--~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE 447 (534)
T PRK05852 381 GEVWLRGTTVVRGYLGD------PTITAANFT-----DG--WLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVE 447 (534)
T ss_pred eEEEEecCcccchhcCC------cccchhhhc-----CC--CcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHH
Confidence 99998 3556553 334555553 12 999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchh
Q 004860 629 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL 708 (727)
Q Consensus 629 ~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKv 708 (727)
++|. .||+|.+|+|++.++...+ +.++++|+..++...+.+++.+ .++++||+|++|..|+++++||+|++||+
T Consensus 448 ~~l~-~~~~V~~~~v~g~~~~~~g-~~~~~~vv~~~~~~~~~~~i~~----~~~~~l~~~~~P~~i~~v~~iP~t~~GKi 521 (534)
T PRK05852 448 GVLA-SHPNVMEAAVFGVPDQLYG-EAVAAVIVPRESAPPTAEELVQ----FCRERLAAFEIPASFQEASGLPHTAKGSL 521 (534)
T ss_pred HHHH-hCCCeeeEEEEecCCcCcC-ceEEEEEEECCCCCCCHHHHHH----HHHHhcccccCCeEEEEhhhcCCCCCccc
Confidence 9995 8999999999999988777 8999999987654455555544 56778999999999999999999999999
Q ss_pred hHHHHHHHHhh
Q 004860 709 LRRVLRDQIKH 719 (727)
Q Consensus 709 dR~~L~~~~~~ 719 (727)
+|++|++++..
T Consensus 522 ~r~~L~~~~~~ 532 (534)
T PRK05852 522 DRRAVAEQFGH 532 (534)
T ss_pred cHHHHHHHhcc
Confidence 99999998854
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=580.60 Aligned_cols=498 Identities=17% Similarity=0.144 Sum_probs=380.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.++ ++||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 47 a~~~p~~~Ai~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~ 118 (600)
T PRK08279 47 AARHPDRPALLFEDQ--------SISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLN 118 (600)
T ss_pred HHhCCCCcEEEeCCC--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecC
Confidence 368999999999776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC-cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
+.++.+++.+++++++++++|+++... +....+...... ..+++...... .....|.++.......+
T Consensus 119 ~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 186 (600)
T PRK08279 119 TQQRGAVLAHSLNLVDAKHLIVGEELV------EAFEEARADLARPPRLWVAGGDTL------DDPEGYEDLAAAAAGAP 186 (600)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHhhhhcccceEEEecCccc------cccccHHHHhhhcccCC
Confidence 999999999999999999999987532 112222222211 12222111100 00223444332221111
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHH-hHHhhhcC
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNG 422 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~~G 422 (727)
...........++++++|+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|.+++.. ++.++..|
T Consensus 187 ~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 266 (600)
T PRK08279 187 TTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAG 266 (600)
T ss_pred ccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcC
Confidence 11111223346689999999999999999999999999999988888899999999999999999999865 45567788
Q ss_pred cEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccc
Q 004860 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (727)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (727)
+++++.+ ..++..+++.++++++|++.++|++++.++...........++|.+ +|+.+++++.+++...++...++|
T Consensus 267 ~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~ 343 (600)
T PRK08279 267 ATLALRR-KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILE 343 (600)
T ss_pred cEEEEcC-CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCcceeee
Confidence 8887765 5678889999999999999999999999987644333345677754 477899999988888877667999
Q ss_pred cccccccccccccCCCCCCccccccccCCC----Cc---------eEEEECCCC--CcCCCCCCeeeeEEE---ecccCC
Q 004860 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATM----TA---------GLVILDECG--VPYPDDQPCVGEVGL---FPLYLG 564 (727)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~----~~---------~~~vld~~~--~~~p~G~~giGel~v---~~~y~~ 564 (727)
.||+||++..++.. ....+++|++.+ +. ...|.+.++ .+++.|+. ||+++ +++.+.
T Consensus 344 ~YG~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~--Gel~~~i~~~~~~~ 417 (600)
T PRK08279 344 FYAASEGNVGFINV----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEV--GLLIGRITDRGPFD 417 (600)
T ss_pred eecccccceeeccc----CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCc--eeEEEEecCccccc
Confidence 99999988643321 122345666554 22 223344333 35778875 89874 222222
Q ss_pred CCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEE
Q 004860 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644 (727)
Q Consensus 565 ~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv 644 (727)
+|.++..++..|..+++..+.+||+|||+|++++||+++++||.||+||++|+||+|.|||++|. +||+|.+|+|+
T Consensus 418 ---GY~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~-~~p~V~~a~v~ 493 (600)
T PRK08279 418 ---GYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALS-GFPGVEEAVVY 493 (600)
T ss_pred ---ccCCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHh-cCCCcceEEEE
Confidence 22345566666766666666779999999999999999999999999999999999999999996 89999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 645 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 645 ~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
+++++..+....+++++..++...+.+++++ +++++||+|++|..|+++++||+|+|||++|++|++++.+.
T Consensus 494 gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 494 GVEVPGTDGRAGMAAIVLADGAEFDLAALAA----HLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred EeecCCCCCccceeEEEecCCccCCHHHHHH----HHHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCc
Confidence 9887654325566777766554555555554 57788999999999999999999999999999999887655
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-64 Score=574.33 Aligned_cols=499 Identities=20% Similarity=0.234 Sum_probs=378.8
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
+.+||++|+++.+. ++||+||+++++++|++|.++ +++||+|+|+++|++++++++|||+++|++++|++|
T Consensus 25 ~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~~ 96 (579)
T PLN03102 25 ECYPNRTSIIYGKT--------RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINT 96 (579)
T ss_pred HhCCCCeEEEECCc--------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccc
Confidence 67999999998776 999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhC-------CCcEEEEcCCCCCCCCCCCcCcccHHHHhcc
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-------PLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (727)
.++.+++.++|+.++++++|+++... +....+.... ...+++++...... .......+|.++...
T Consensus 97 ~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 168 (579)
T PLN03102 97 RLDATSIAAILRHAKPKILFVDRSFE------PLAREVLHLLSSEDSNLNLPVIFIHEIDFPK--RPSSEELDYECLIQR 168 (579)
T ss_pred cCCHHHHHHHHhccCCeEEEEChhhH------HHHHHHHhhccccccccCceEEEeccccccc--CCcccccCHHHHHhc
Confidence 99999999999999999999987543 1112221111 11233332211100 001123456666543
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHh
Q 004860 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (727)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (727)
................++++++|+|||||||.||||+++|+++..........+.+...+++++..|+.|..++...+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~ 248 (579)
T PLN03102 169 GEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGT 248 (579)
T ss_pred cCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHH
Confidence 32211000000112356899999999999999999999999975544333344556778899999999999888777788
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCC
Q 004860 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (727)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (727)
+..|+++++.+. .++..+++.|+++++|++.++|+++..|.+.........++++.+++||+++++....++.. + ++
T Consensus 249 ~~~g~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~-g~ 325 (579)
T PLN03102 249 AARGGTSVCMRH-VTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-L-GF 325 (579)
T ss_pred HHhcCcEEeecc-CChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-c-CC
Confidence 999999988863 56778999999999999999999999998764333334567888999999999988887764 3 67
Q ss_pred cccccccccccccccccCCCC------C-------CccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----e
Q 004860 499 AIIESCGGTELSSAYIQGSLL------Q-------PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----F 559 (727)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~------~-------~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~ 559 (727)
++++.||+||+++.++..... . ....+..+.+++ .+.|.| +.++++|.+...+|||+| .
T Consensus 326 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~ 403 (579)
T PLN03102 326 QVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSSIM 403 (579)
T ss_pred eEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECcchh
Confidence 899999999998643322110 0 011222233443 456667 457777753111499998 3
Q ss_pred cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCce
Q 004860 560 PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 639 (727)
Q Consensus 560 ~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~ 639 (727)
.||++. ++.++..|.. | ||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|. .||.|.
T Consensus 404 ~GY~~~------~~~t~~~f~~-----g--w~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~ 469 (579)
T PLN03102 404 KGYLKN------PKATSEAFKH-----G--WLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLY-KYPKVL 469 (579)
T ss_pred hhhcCC------hhhhHhhhcc-----C--ceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHH-hCCCcc
Confidence 566653 3355555531 3 9999999999999999999999999999999999999999996 899999
Q ss_pred eeEEEeecCCCCCceEEEEEEEecCCCCCChHH------HHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHH
Q 004860 640 ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK------LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 713 (727)
Q Consensus 640 ~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~------l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L 713 (727)
+++|++++++..+ +.++++|++.++...+... -...+++.++++||+|++|..++++++||+|++||++|++|
T Consensus 470 ~a~vv~~~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L 548 (579)
T PLN03102 470 ETAVVAMPHPTWG-ETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKILKPKL 548 (579)
T ss_pred eeEEEeccCcccc-ceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEcccCCCCCcccccHHHH
Confidence 9999999998887 8999999988764332111 12456677888999999999999999999999999999999
Q ss_pred HHHHhhhh
Q 004860 714 RDQIKHEL 721 (727)
Q Consensus 714 ~~~~~~~~ 721 (727)
++++.+..
T Consensus 549 ~~~~~~~~ 556 (579)
T PLN03102 549 RDIAKGLV 556 (579)
T ss_pred HHHHHHhh
Confidence 99986643
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-64 Score=570.29 Aligned_cols=485 Identities=20% Similarity=0.217 Sum_probs=390.1
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+. ++||+||.++++++|+.|.+. +++||+|+|+++|+++++++++||+++|++++|++
T Consensus 17 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 88 (528)
T PRK07470 17 ARRFPDRIALVWGDR--------SWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTN 88 (528)
T ss_pred HHHCCCceEEEECCc--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecC
Confidence 368999999998766 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
+.++.+++.+++++++++++++++..... ...+.+.... ..+.+.. . ....++.+++.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~- 152 (528)
T PRK07470 89 FRQTPDEVAYLAEASGARAMICHADFPEH------AAAVRAASPDLTHVVAIGG--A-------RAGLDYEALVARHLG- 152 (528)
T ss_pred ccCCHHHHHHHHHhcCceEEEEcchhHHH------HHHHHhhCCcCceEEEeCC--C-------cccccHHHHHhcCCC-
Confidence 99999999999999999999998754211 1111111111 1222211 1 112356665543221
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchh--cCCCCCCEEEEecccccccchHHhHHhhh
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~l~ 420 (727)
.........++++++|+|||||||.||||+++|+++...+...... .+..++|+++..+|++|+.++..++ .++
T Consensus 153 ---~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~ 228 (528)
T PRK07470 153 ---ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVA 228 (528)
T ss_pred ---CCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HHh
Confidence 1112234567899999999999999999999999987654432222 2567889999999999998887554 677
Q ss_pred cCcEEEEecC-CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCc
Q 004860 421 NGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (727)
Q Consensus 421 ~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (727)
.|++.++++. ..+++.+++.|+++++|++.++|++++.+.+.......+++++|.+++||+++++....++...+ +.+
T Consensus 229 ~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~ 307 (528)
T PRK07470 229 RGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKL-GKV 307 (528)
T ss_pred cCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHh-CcH
Confidence 8888877753 45788899999999999999999999999887655566789999999999999999888777665 468
Q ss_pred ccccccccccccccccCCCC-------CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCc
Q 004860 500 IIESCGGTELSSAYIQGSLL-------QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASD 567 (727)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~-------~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~ 567 (727)
+++.||+||++..++..... .....+++|+|++++.++|+|+++++++.|+. |||++ ..||+++
T Consensus 308 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~--Gel~i~~~~~~~gy~~~-- 383 (528)
T PRK07470 308 LVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGET--GEICVIGPAVFAGYYNN-- 383 (528)
T ss_pred HHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCc--eEEEEeCCccchhhcCC--
Confidence 99999999998655433211 12235688999999999999999999999985 99998 3455553
Q ss_pred cccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeec
Q 004860 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647 (727)
Q Consensus 568 ~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~ 647 (727)
++.++..|. ..||+|||+|++++||+++++||.||+||++|+||+|.|||++|. ++|+|.+++|++.+
T Consensus 384 ----~~~~~~~~~-------~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~ 451 (528)
T PRK07470 384 ----PEANAKAFR-------DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLL-THPAVSEVAVLGVP 451 (528)
T ss_pred ----HHHHHhhhc-------CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHH-hCCCceEEEEEecc
Confidence 334444443 129999999999999999999999999999999999999999995 89999999999999
Q ss_pred CCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 648 ~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
++..+ +.++++++..++...+.++++ +++++.|++|++|..++++++||+|+|||++|+.|+++++++
T Consensus 452 ~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 519 (528)
T PRK07470 452 DPVWG-EVGVAVCVARDGAPVDEAELL----AWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEER 519 (528)
T ss_pred CcccC-ceeEEEEEECCCCCCCHHHHH----HHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhc
Confidence 88777 888999998776555555544 457788899999999999999999999999999999988654
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-64 Score=569.50 Aligned_cols=492 Identities=20% Similarity=0.216 Sum_probs=389.5
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++.+||++|+++.+. ..+....+||+||+++++++|.+|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 32 ~~~~p~~~a~~~~~~--~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 109 (538)
T TIGR03208 32 VANCPDKPALTAYRD--GHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLM 109 (538)
T ss_pred HHHCCCceEEEeecc--cCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeccC
Confidence 367899999987422 112235899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
|.++.+++.+++++++++++++++.+. ..........+....+. .++++... ....|+..+......
T Consensus 110 ~~~~~~~l~~~l~~~~~~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 178 (538)
T TIGR03208 110 PIFRERELSFMLNHADSKVFVVPSVFR-GFDHAAMARELQSKLPALRQVVVIDGD----------GDDSFDRVLMTPERD 178 (538)
T ss_pred cccCHHHHHHHHHhcCCeEEEEccccc-cccHHHHHHHHhccCCcceEEEEecCC----------CCcCHHHHhhccccc
Confidence 999999999999999999999987532 11111111112222222 22222111 112344433221100
Q ss_pred CCCC---CCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHh
Q 004860 343 PRPN---YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (727)
Q Consensus 343 ~~~~---~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (727)
.... ........++++++++|||||||.||||+++|+++...+......++++.+|++++.+|++|..+. +.++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~ 258 (538)
T TIGR03208 179 DTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMP 258 (538)
T ss_pred cccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHH
Confidence 0000 011123467999999999999999999999999999888877778889999999999999998876 568899
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCC
Q 004860 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (727)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (727)
+..|+++++.+ ..++..+++.|+++++|++.++|+++..+.........+++++|.+++||+++++++.+++.+.+ ++
T Consensus 259 l~~g~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~ 336 (538)
T TIGR03208 259 LILNATAVLQD-IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL-GA 336 (538)
T ss_pred HHcCCEEEecC-ccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHc-CC
Confidence 99999998875 56788999999999999999999999988765433445678999999999999999988887766 58
Q ss_pred cccccccccccccccccCCCCC-CccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-----cccCCCCcccccc
Q 004860 499 AIIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNA 572 (727)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~ 572 (727)
+++|.||+||++...+...... .....++|+|++++.++|+|+++++++.|+. |||++. .||+++++
T Consensus 337 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~--Gel~v~g~~~~~gy~~~~~----- 409 (538)
T TIGR03208 337 LIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGET--GRLLVRGCSNFGGYLKRPH----- 409 (538)
T ss_pred eEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcCCCC--cEEEEecCcccccccCCcc-----
Confidence 8999999999986544332211 1223578999999999999999999999986 999983 45554332
Q ss_pred ccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCC
Q 004860 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (727)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~ 652 (727)
.++ + .+.+||+|||+|++++||+++++||.||+||++|++|+|.|||++|. .||+|.+++|++.++...+
T Consensus 410 -~~~--~------~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~-~~~~v~~~~v~~~~~~~~g 479 (538)
T TIGR03208 410 -LNS--T------DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLY-QHPAVAQVAIVAYPDERLG 479 (538)
T ss_pred -ccc--c------cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHh-cCcceeeEEEEeccCCCCC
Confidence 222 1 13459999999999999999999999999999999999999999995 8999999999999988777
Q ss_pred ceEEEEEEEecCCCCCChHHHHHHHHHHHH-hhcCCCcccceEEEcCCCCCCCCchhhHHHHH
Q 004860 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ-SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714 (727)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 714 (727)
+.+++++++..+...+.+++.++ ++ .+++.|++|..++++++||+|+|||++|++|+
T Consensus 480 -~~~~a~v~~~~~~~~~~~~l~~~----~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 480 -ERACAVVVPKPGCTLDFAAMVAF----LKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred -ceEEEEEEECCCCCCCHHHHHHH----HHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence 89999999987655665665554 55 37899999999999999999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=581.58 Aligned_cols=489 Identities=22% Similarity=0.229 Sum_probs=373.7
Q ss_pred CCCCCceEEEEecCCC-CCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec-C
Q 004860 187 RKEDNTVAIVWREDRC-DESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI-A 264 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl-~ 264 (727)
+++|+++|+++.+... ..+.+..+||+||.++++++|++|.+.+++||+|+|+++|++++++++|||+++|++++|+ +
T Consensus 45 ~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~~~gd~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~~ 124 (612)
T PRK12476 45 ANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQVAGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFA 124 (612)
T ss_pred HhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCChhHHHHHHHHHHcCceeEecCC
Confidence 6789999999854210 1123458999999999999999998769999999999999999999999999999999999 6
Q ss_pred CCCC--HHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC----CcEEEEcCCCCCCCCCCCcCcccHHHHhcc
Q 004860 265 DSFA--AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (727)
Q Consensus 265 p~~~--~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (727)
+.++ .+++.+++++++++++|+++... +.......... ..++.+... ...
T Consensus 125 ~~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~------------------~~~ 180 (612)
T PRK12476 125 PELPGHAERLDTALRDAEPTVVLTTTAAA------EAVEGFLRNLPRLRRPRVIAIDAI------------------PDS 180 (612)
T ss_pred CCcchhHHHHHHHHHhCCCCEEEEcHHHH------HHHHHHHhhcccccCceEEEeccc------------------ccc
Confidence 8877 88999999999999999987532 11111111111 112222100 000
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcC-CCCCCEEEEecccccccchHHhHH
Q 004860 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVYCWPTNLGWVMGPVILFS 417 (727)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~~~~~~~~~~~~~~ 417 (727)
.. .........++++++|+|||||||+||||+++|+++++.+......++ +.+++++++.+|+.|+.++..++.
T Consensus 181 ~~-----~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~ 255 (612)
T PRK12476 181 AG-----ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGF 255 (612)
T ss_pred cc-----ccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHH
Confidence 00 001112335689999999999999999999999999877766666677 788999999999999999977767
Q ss_pred hhhcCcEEEEecC-CC--ChhhHHHHHH--HhCCCEEEechHHHHHHHhcCC----CCCCCccceeEEEeecCCCChhhH
Q 004860 418 SFLNGATLALYQG-SP--LERSFGKFVQ--DAGVTVLGTVPSLVKAWRNTNC----LEGLDWTKIRSFASTGETSNVDDD 488 (727)
Q Consensus 418 ~l~~G~~lv~~~~-~~--~~~~l~~~i~--~~~vt~l~~~P~~l~~l~~~~~----~~~~~l~~Lr~i~~gGe~l~~~~~ 488 (727)
+++.|+++++... .. ++..+++.++ ++++|++..+|+++..++.... ....++++|| +++||++++++..
T Consensus 256 ~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~ 334 (612)
T PRK12476 256 PAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAV 334 (612)
T ss_pred HHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHH
Confidence 7677777777653 22 6788999995 5899999999999887765421 1344688999 9999999999998
Q ss_pred HHHHhhCC-----CCcccccccccccccccccCCCCCC--------------------------ccccccccCCCCceEE
Q 004860 489 LWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP--------------------------QAFGAFSTATMTAGLV 537 (727)
Q Consensus 489 ~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~--------------------------~~~~~iG~p~~~~~~~ 537 (727)
+++.+.++ ..+++|.||+||++..++...+... ...+++|+|++|++++
T Consensus 335 ~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ 414 (612)
T PRK12476 335 TTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAV 414 (612)
T ss_pred HHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEE
Confidence 88877652 2459999999998764433221100 0124789999999999
Q ss_pred EECCC-CCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccc------------cCCCceeeeeCceEEE
Q 004860 538 ILDEC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMP------------MYKGMCLRRHGDIIKR 599 (727)
Q Consensus 538 vld~~-~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p------------~~~g~~~yrTGDl~~~ 599 (727)
|+|++ |+++|.|+. |||++ +.||++ +++.|++.|...+ ..++.+||+|||+|++
T Consensus 415 ivd~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~ 486 (612)
T PRK12476 415 IVDPDTGAELPDGEV--GEIWLHGDNIGRGYWG------RPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY 486 (612)
T ss_pred EEeCCCCcCCCCCCE--EEEEEcCCcccccccC------ChHHHHHHHhhhhccccccccccccccCCCCeeecccccee
Confidence 99988 999999995 99998 355655 3446666665211 0123469999999998
Q ss_pred ecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCcee--eEEEeecCCCCCceEEEEEEEecCCCC-CChHHHHHH
Q 004860 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE--TAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMI 676 (727)
Q Consensus 600 ~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~--a~vv~~~~~~~~~~~l~a~vv~~~~~~-~~~~~l~~~ 676 (727)
.||+|+|+||+||+||++|+||+|.|||++|.+.||.|.+ ++|++.+++. + ++++++++++++.. .+.+++.++
T Consensus 487 -~dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~l~~~ 563 (612)
T PRK12476 487 -LDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-N-ERLVIVAERAAGTSRADPAPAIDA 563 (612)
T ss_pred -ECCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-c-ceEEEEEEecCCcccccHHHHHHH
Confidence 4999999999999999999999999999999635899999 6667777766 5 89999999887643 566778887
Q ss_pred HHHHHHhhcCCCcc-cceEEEcC--CCCCCCCchhhHHHHHHHHhh
Q 004860 677 FSKAIQSKLNPLFK-VSLVKVVP--EFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 677 l~~~l~~~L~~~~~-P~~i~~v~--~lP~t~~GKvdR~~L~~~~~~ 719 (727)
+++++... |++ |..+++++ +||+|+||||+|++|++++.+
T Consensus 564 ~~~~l~~~---~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~ 606 (612)
T PRK12476 564 IRAAVSRR---HGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLD 606 (612)
T ss_pred HHHHHHHh---hCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHc
Confidence 77776543 566 57788876 699999999999999998754
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-64 Score=569.99 Aligned_cols=489 Identities=19% Similarity=0.216 Sum_probs=389.1
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++.+|+++|+++...+ +.+||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 38 a~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 111 (546)
T PLN02330 38 AELYADKVAFVEAVTG------KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGAN 111 (546)
T ss_pred hhcCCCccEEEecCCC------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCC
Confidence 3689999999874221 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|+++...... .......+++.... ......|.+++......
T Consensus 112 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~----------~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~-- 172 (546)
T PLN02330 112 PTALESEIKKQAEAAGAKLIVTNDTNYGKV----------KGLGLPVIVLGEEK-------IEGAVNWKELLEAADRA-- 172 (546)
T ss_pred ccCCHHHHHHHHHhcCCeEEEEccchhhhH----------hhcCCcEEEecCCC-------CCCcccHHHHHhhcccc--
Confidence 999999999999999999999988643211 11122233332111 11234566665443221
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcC--CCCCCEEEEecccccccchH-HhHHhhhc
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPV-ILFSSFLN 421 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~-~~~~~l~~ 421 (727)
..........++++++++|||||||.||||+++|+++...+.......+ ....++++...|+.|.++.. .++.+|..
T Consensus 173 ~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~ 252 (546)
T PLN02330 173 GDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRN 252 (546)
T ss_pred CcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhc
Confidence 1111122345689999999999999999999999998876543221111 22345788888999988874 46788999
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCcc--ceeEEEeecCCCChhhHHHHHhhCCCCc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT--KIRSFASTGETSNVDDDLWLSSKAWYNA 499 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~--~Lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (727)
|+++++.+ ..++..+++.++++++|++.++|+++..|+........+++ ++|.+++||++++++..+++.+.+++++
T Consensus 253 g~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~ 331 (546)
T PLN02330 253 KGKVVVMS-RFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQ 331 (546)
T ss_pred CCEEEEec-ccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCe
Confidence 99999886 56788999999999999999999999999876544444444 4789999999999999999998888899
Q ss_pred ccccccccccccccccCCCCC----CccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCccc
Q 004860 500 IIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRL 569 (727)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~ 569 (727)
+++.||+||++++........ .....++|+|++|++++|+| ++++++|.|+. |||++ ..||++.+
T Consensus 332 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~--Gel~v~g~~~~~gy~~~~--- 406 (546)
T PLN02330 332 VQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTP--GELCVRSQCVMQGYYNNK--- 406 (546)
T ss_pred EEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCc--eEEEEecchhhhhhccCc---
Confidence 999999999976443321111 12345799999999999999 57899999986 99998 35566543
Q ss_pred cccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCC
Q 004860 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649 (727)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~ 649 (727)
+.++..|. ..+||+|||+|++++||+++++||.||+||++|++|+|.|||++|. ++|+|.+++|++++++
T Consensus 407 ---~~~~~~~~------~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~ 476 (546)
T PLN02330 407 ---EETDRTID------EDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILL-THPSVEDAAVVPLPDE 476 (546)
T ss_pred ---cchhhhcc------CCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHH-hCCchheEEEEecccc
Confidence 24444442 2349999999999999999999999999999999999999999995 8999999999999988
Q ss_pred CCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 650 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 650 ~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
..+ +.++++|++.++...+.+++ ++.+++.|++|++|+.++.+++||+|++||++|++|++++...
T Consensus 477 ~~g-~~~~a~v~~~~~~~~~~~~l----~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~~ 542 (546)
T PLN02330 477 EAG-EIPAACVVINPKAKESEEDI----LNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSI 542 (546)
T ss_pred ccC-ceeEEEEEECCCCCCCHHHH----HHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHHHHHHhh
Confidence 777 89999999887655554444 4457778999999999999999999999999999999999765
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-64 Score=567.51 Aligned_cols=490 Identities=22% Similarity=0.240 Sum_probs=407.3
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+++.+|+++|+.+.++ .+||+||.++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 15 ~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~ 86 (521)
T PRK06187 15 GARKHPDKEAVYFDGR--------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPI 86 (521)
T ss_pred HHHHCCCceEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEec
Confidence 3478999999999887 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (727)
++.++.+++..+++.+++++++++.... +.+..+.+..+. +.+++...... ........+.+++.....
T Consensus 87 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 157 (521)
T PRK06187 87 NIRLKPEEIAYILNDAEDRVVLVDSEFV------PLLAAILPQLPTVRTVIVEGDGPAA---PLAPEVGEYEELLAAASD 157 (521)
T ss_pred ccCCCHHHHHHHHHhcCCeEEEEcchHH------HHHHHHhhccCCccEEEEecCcccc---ccccccccHHHHhhcCCc
Confidence 9999999999999999999999987532 222333333332 23333222110 112234456666544322
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhc
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (727)
........++++++++|||||||.||+|.++|+++.+........++++++|++++.+|++|..++...+.++..
T Consensus 158 -----~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~ 232 (521)
T PRK06187 158 -----TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMA 232 (521)
T ss_pred -----cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHh
Confidence 112234466899999999999999999999999999888888888999999999999999999888777779999
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
|+++++++.. ++..+++.|+++++|++.++|++++.|.........+++++|.+++|||++++...+++.+.+ +++++
T Consensus 233 G~~~v~~~~~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~ 310 (521)
T PRK06187 233 GAKQVIPRRF-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLV 310 (521)
T ss_pred CCEEEecCCC-CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHh-Ccchh
Confidence 9999998764 888999999999999999999999999988766567789999999999999999999888876 78999
Q ss_pred ccccccccccccccCCCCCC-----ccccccccCCCCceEEEECCCCCcCCC--CCCeeeeEEEe-----cccCCCCccc
Q 004860 502 ESCGGTELSSAYIQGSLLQP-----QAFGAFSTATMTAGLVILDECGVPYPD--DQPCVGEVGLF-----PLYLGASDRL 569 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~-----~~~~~iG~p~~~~~~~vld~~~~~~p~--G~~giGel~v~-----~~y~~~~~~~ 569 (727)
|.||+||++.+......... ....++|+|++++.++|+|++++++|. |+. |||++. .+|+++
T Consensus 311 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~--Gel~v~~~~~~~~y~~~---- 384 (521)
T PRK06187 311 QGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEV--GEIIVRGPWLMQGYWNR---- 384 (521)
T ss_pred eeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCe--eEEEEECcchhhhhcCC----
Confidence 99999999865554433222 256789999999999999999999998 775 999983 344432
Q ss_pred cccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCC
Q 004860 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649 (727)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~ 649 (727)
++.++..|. .| ||+|||+|+++++|++++.||.||+||++|.+|+|.+||++|. .+|+|.+++|++.+++
T Consensus 385 --~~~~~~~~~-----~~--~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~ 454 (521)
T PRK06187 385 --PEATAETID-----GG--WLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALY-GHPAVAEVAVIGVPDE 454 (521)
T ss_pred --HHHHHHHhh-----CC--ceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHH-hCCCceEEEEEeccCC
Confidence 223444443 23 9999999999999999999999999999999999999999995 8999999999999887
Q ss_pred CCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhh
Q 004860 650 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 650 ~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 719 (727)
..+ +.++++++++++...+..++++ ++++.|++|++|..++++++||+|++||++|+.|++++++
T Consensus 455 ~~~-~~~~~~v~~~~~~~~~~~~l~~----~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 455 KWG-ERPVAVVVLKPGATLDAKELRA----FLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAE 519 (521)
T ss_pred CcC-ceEEEEEEECCCCCCCHHHHHH----HHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhc
Confidence 777 8999999988776566555555 4677899999999999999999999999999999999875
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-64 Score=566.11 Aligned_cols=479 Identities=19% Similarity=0.212 Sum_probs=395.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++.+|+++|+.+.+. .+||+||.++++++|+.|.+. +++|++|+|+++|+.++++++|||+++|++++|++
T Consensus 10 a~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~ 81 (502)
T TIGR01734 10 AETYPQTIAYRYQGQ--------ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVD 81 (502)
T ss_pred HHHCCCceEEEcCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCC
Confidence 367899999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
+.++.+++.++++.++++.+++++....... ....+.+. ..........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~------------~~~~~~~~---------------~~~~~~~~~~---- 130 (502)
T TIGR01734 82 TSIPSERIEMIIEAAGPELVIHTAELSIDAV------------GTQIITLS---------------ALEQAETSGG---- 130 (502)
T ss_pred CcChHHHHHHHHHhcCCCEEEeccccccccc------------CCceEEch---------------HhhhhhhhcC----
Confidence 9999999999999999999999875321100 00111110 0011111100
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcE
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (727)
+ ........++++++++|||||||.||+|+++|+++...+.+....+++..+++++...|++|+.+++.++.++..|++
T Consensus 131 ~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~ 209 (502)
T TIGR01734 131 P-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGT 209 (502)
T ss_pred C-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCE
Confidence 0 011122356889999999999999999999999999988888778889999999999999999999889999999999
Q ss_pred EEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccc
Q 004860 425 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (727)
Q Consensus 425 lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (727)
+++.+.. .++..+++.++++++|.+.++|+++..++........++++++.++++|++++++..+++.+.++++++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 289 (502)
T TIGR01734 210 LHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYN 289 (502)
T ss_pred EEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEe
Confidence 9998753 46788999999999999999999998877654445566889999999999999999999998888899999
Q ss_pred cccccccccccccCCC----CCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccc
Q 004860 503 SCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (727)
Q Consensus 503 ~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (727)
.||+||++++++.... .......++|+|.++++++|+|++++++|.|+. |||++ .+||++.+ +
T Consensus 290 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~g~~~~~gy~~~~------~ 361 (502)
T TIGR01734 290 TYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEK--GEIVIVGPSVSKGYLNNP------E 361 (502)
T ss_pred CccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCe--eEEEEccccccccccCCc------c
Confidence 9999999864443221 122234579999999999999999999999985 99998 45666643 3
Q ss_pred cccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeec-CCCCC
Q 004860 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS-PAGGG 652 (727)
Q Consensus 574 ~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~-~~~~~ 652 (727)
.+...|.. ..|.+||+|||+|+++++ +++++||.||+||++|++|+|.|||+++. ++|.|.++++++.. +...+
T Consensus 362 ~~~~~~~~---~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~-~~~~v~~~~vv~~~~~~~~~ 436 (502)
T TIGR01734 362 KTAEAFFS---HEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLR-QSSYIESAVVVPKYNKDHKV 436 (502)
T ss_pred cchHhhee---CCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHH-cCCCccEEEEEEEEcCCCCc
Confidence 44444432 235679999999999977 99999999999999999999999999996 99999999999866 34444
Q ss_pred ceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHh
Q 004860 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 718 (727)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 718 (727)
+.++++|++......+...+.+.+++.+++.|++|++|..++++++||+|++||++|++|++++.
T Consensus 437 -~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 437 -EYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred -eEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 78999999876544444566677888899999999999999999999999999999999999875
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-64 Score=563.35 Aligned_cols=477 Identities=21% Similarity=0.217 Sum_probs=391.9
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++|+++|+++.+. .+||.||.++++++|.+|.+. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 12 ~~~~~~~~a~~~~~~--------~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~ 83 (497)
T PRK06145 12 ARRTPDRAALVYRDQ--------EISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPIN 83 (497)
T ss_pred HHHCCCceEEEECCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecc
Confidence 368899999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
+.++.+++.+++++++++++++++..... .. .....+.+.... ...+..+......
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~--- 139 (497)
T PRK06145 84 YRLAADEVAYILGDAGAKLLLVDEEFDAI----------VA-LETPKIVIDAAA----------QADSRRLAQGGLE--- 139 (497)
T ss_pred cccCHHHHHHHHHhcCCcEEEEccchhhh----------hh-cccceEEecCcc----------cchhHHHhccCCC---
Confidence 99999999999999999999998753211 00 011112221100 0011111111000
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcCc
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGA 423 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~ 423 (727)
........++++++++|||||||.||||+++|+++..........+++..+|+++...|+.|..++ +..+.++..|+
T Consensus 140 --~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~ 217 (497)
T PRK06145 140 --IPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGG 217 (497)
T ss_pred --CCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccC
Confidence 011123467899999999999999999999999988776666677889999999999999998877 34567899999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccc
Q 004860 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (727)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (727)
++++.+ ..++..+++.++++++|++.++|+++..++........+++++|.+++|||++++...+++.+.++++++++.
T Consensus 218 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~ 296 (497)
T PRK06145 218 TLRIHR-EFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDA 296 (497)
T ss_pred EEEECC-cCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEe
Confidence 998876 4678899999999999999999999999988765556678899999999999999999999888878899999
Q ss_pred ccccccccccccCCCC-CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccc
Q 004860 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (727)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~ 577 (727)
||+||++..++..... .....+++|+|+++++++|+|++++++|.|+. |||++ ..||++. ++.++.
T Consensus 297 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~--Gel~v~g~~~~~Gy~~~------~~~~~~ 368 (497)
T PRK06145 297 YGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMK--GEICMRGPKVTKGYWKD------PEKTAE 368 (497)
T ss_pred ecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCc--eEEEEECcchhhhhcCC------hHHHHH
Confidence 9999998754433221 22345689999999999999999999999985 99998 3556653 334555
Q ss_pred cccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
.|.+ .||+|||+|++++||+++++||+||+||++|++|+|.+||++|. .+|+|.+++|++.+++..+ +.++
T Consensus 369 ~~~~-------~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~ 439 (497)
T PRK06145 369 AFYG-------DWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIY-ELPEVAEAAVIGVHDDRWG-ERIT 439 (497)
T ss_pred HHhC-------CCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHH-hCCCeeEEEEEecCCCccC-ceEE
Confidence 5531 39999999999999999999999999999999999999999995 8999999999999988777 8899
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHh
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 718 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 718 (727)
+++++.++...+.+++. ++++++|++|++|..++++++||+|++||++|++|+++++
T Consensus 440 ~~v~~~~~~~~~~~~l~----~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 440 AVVVLNPGATLTLEALD----RHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred EEEEECCCCCCCHHHHH----HHHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 99998765555545444 4577788999999999999999999999999999998765
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=590.27 Aligned_cols=488 Identities=19% Similarity=0.211 Sum_probs=372.8
Q ss_pred CCCCCC-ceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++|+ ++|+.+.+. +++||+||.++++++|++|.+.+++||+|+|+++|++++++++|||+++|++++|++
T Consensus 214 ~~~~p~~~~a~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~ 286 (718)
T PRK08043 214 QYRYGAGKPCIEDVNF-------TPDSYRKLLKKTLFVGRILEKYSVEGERIGLMLPNATISAAVIFGASLRRRIPAMMN 286 (718)
T ss_pred HHHhCCCCcceEcCCC-------CcccHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCcHHHHHHHHHHHHcCCcccccc
Confidence 468897 688875321 289999999999999999987789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC-cEEEEcCCCCCCCCCCCcCcccHHHH--hcccCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDF--LSSVDY 341 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 341 (727)
+.++.+++.+++++++++++|+++......+... +....+. ..+++.... ....+.+. ......
T Consensus 287 ~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~~~~~ 353 (718)
T PRK08043 287 YTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWH----LPEQLTQVRWVYLEDLK---------DDVTTADKLWIFAHLL 353 (718)
T ss_pred cCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCC----hhhhhccccEEEhhhhh---------hhcchhHHHHHHHHHh
Confidence 9999999999999999999999876432111100 0011111 122211100 00011110 000000
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhh
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~ 420 (727)
.. ........++++++++|||||||.||||+++|+++++.+.+....++++++|++++.+|++|.+++ ..++.++.
T Consensus 354 --~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~ 430 (718)
T PRK08043 354 --MP-RLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLL 430 (718)
T ss_pred --CC-ccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHH
Confidence 00 001123467899999999999999999999999999888877777889999999999999999887 45789999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
.|+++++.+...+...+++.++++++|++..+|+++..+.+.. ...++++||.+++||+++++++.+.+...+ ++++
T Consensus 431 ~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l 507 (718)
T PRK08043 431 TGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF-GLRI 507 (718)
T ss_pred cCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc-CCCe
Confidence 9999999875456677889999999999999999998886642 345678999999999999999988887765 6889
Q ss_pred cccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccc
Q 004860 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~ 575 (727)
++.||+||++.+++...+ .....+++|+|++|++++|+|+++. |+. |||++ ..||++.. +++.+
T Consensus 508 ~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~~~i~d~~~~----~~~--Gel~v~g~~v~~GY~~~e----~~~~~ 576 (718)
T PRK08043 508 LEGYGVTECAPVVSINVP-MAAKPGTVGRILPGMDARLLSVPGI----EQG--GRLQLKGPNIMNGYLRVE----KPGVL 576 (718)
T ss_pred ecccCcccccceEEecCC-cccCCCCCCCcCCCCeeEEecCCCC----CCc--eEEEEecCCccccccCCC----Ccccc
Confidence 999999999865543322 2335679999999999999997653 333 88887 45665521 11111
Q ss_pred ccccc-ccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCce
Q 004860 576 EVYFR-GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (727)
Q Consensus 576 ~~~f~-~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~ 654 (727)
...+. ........+||+|||+|++|+||+++|+||+||+||++|++|+|.|||+++. +|+.+.+++|++.+++..+ +
T Consensus 577 ~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~-~~~~~~~~avv~~~~~~~g-e 654 (718)
T PRK08043 577 EVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLAL-GVSPDKQHATAIKSDASKG-E 654 (718)
T ss_pred cccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHH-hCCccceEEEEEccCCCCC-c
Confidence 10000 0000112349999999999999999999999999999999999999999996 8888888889998888777 8
Q ss_pred EEEEEEEecCCCCCChHHHHHHHHHHHHhh-cCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhh
Q 004860 655 VLVIFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~-L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 719 (727)
.++++++ +...+.+++++ +++++ |+.|++|..++++++||+|++|||||++|++++.+
T Consensus 655 ~~v~~~~---~~~~~~~~l~~----~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 713 (718)
T PRK08043 655 ALVLFTT---DSELTREKLQQ----YAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE 713 (718)
T ss_pred eEEEEEc---CcccCHHHHHH----HHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence 8888764 23345555554 45555 99999999999999999999999999999988754
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=604.47 Aligned_cols=484 Identities=16% Similarity=0.120 Sum_probs=367.5
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+++++||++|+++.++ ++||+||+++++++|+.|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 456 ~a~~~pd~~Al~~~~~--------~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl 527 (994)
T PRK07868 456 QARDAPKGEFLLFDGR--------VHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLM 527 (994)
T ss_pred HHHHCCCCeEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEe
Confidence 4578999999998776 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCc--CcccHHHHhcccCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE--QDLSWKDFLSSVDY 341 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 341 (727)
+|. +++.++++++++++||+++... ..+.+ ....++++.... ........ ...++++.......
T Consensus 528 ~p~---~~l~~il~~s~~~~li~~~~~~---------~~~~~-~~~~iiv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 593 (994)
T PRK07868 528 PPD---TDLAAAVRLGGVTEIITDPTNL---------EAARQ-LPGRVLVLGGGE-SRDLDLPDDADVIDMEKIDPDAVE 593 (994)
T ss_pred CCc---hhHHHHHhccCCeEEEEChHHH---------HHHHh-cCceEEEecCCc-cccccCCcchhhhhhhhcCccccc
Confidence 985 6899999999999999986432 11111 223344432111 00000000 01111111110000
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhc
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (727)
.+.........+++++||+|| ||||.||++.++|.+...........++++++|++++.+|++|+++++..+.+++.
T Consensus 594 --~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~ 670 (994)
T PRK07868 594 --LPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVV 670 (994)
T ss_pred --CCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhc
Confidence 000011112236899999999 57888888888887755444444456788999999999999999999776666555
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
|++.++.....++..+++.|++++||++.++|++++.|++.......++++||.++. +.+++++.+++.+.++.++++
T Consensus 671 gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~g--~gl~~~l~~~~~~~~~~~~l~ 748 (994)
T PRK07868 671 GGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIG--SGMPTGLWERVVEAFAPAHVV 748 (994)
T ss_pred cceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEec--CCCCHHHHHHHHHHhCchhee
Confidence 555555544678899999999999999999999999998865444456789998763 348999999998888778999
Q ss_pred ccccccccccccccCCCCCCccccccccCCCCc-eEEE-----------ECCCC--CcCCCCCCeeeeEEEe-cccCCCC
Q 004860 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVI-----------LDECG--VPYPDDQPCVGEVGLF-PLYLGAS 566 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~v-----------ld~~~--~~~p~G~~giGel~v~-~~y~~~~ 566 (727)
|.||+||+++... .. .....+++|+|++|+ +++| +|++| ++++.|+. |||++. ++|++ +
T Consensus 749 ~~YG~TE~~~~~~-~~--~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~--Gel~~~~~~~~~-p 822 (994)
T PRK07868 749 EFFATTDGQAVLA-NV--SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEV--GVLLARARGPID-P 822 (994)
T ss_pred eeeeccccccccc-cc--CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCc--eEEEEecCCCCC-h
Confidence 9999999875432 11 123457899999997 5554 35666 67888886 999984 44442 1
Q ss_pred ccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEee
Q 004860 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646 (727)
Q Consensus 567 ~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~ 646 (727)
. ...+..+|. ++.+||+|||+|++|+||+|+|+||+||+||++|.+|+|+|||++|. +||+|.+|+|+++
T Consensus 823 ~----~t~~~~~~~-----~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~-~hp~V~~aaVvg~ 892 (994)
T PRK07868 823 T----ASVKRGVFA-----PADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALG-RIGGVDLAVTYGV 892 (994)
T ss_pred h----hhhHhcccc-----cCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHh-cCCCeeEEEEEee
Confidence 1 001222342 25679999999999999999999999999999999999999999995 9999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHh
Q 004860 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 718 (727)
Q Consensus 647 ~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 718 (727)
+++. + +.+++||+++++...+.++++++ +++ ||+||+|+.|+++++||+|+|||++|++|++...
T Consensus 893 ~d~~-~-~~~~a~Vv~~~~~~~~~~~L~~~----l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~l 957 (994)
T PRK07868 893 EVGG-R-QLAVAAVTLRPGAAITAADLTEA----LAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI 957 (994)
T ss_pred cCCC-C-ceEEEEEEeCCCCcCCHHHHHHH----HHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCC
Confidence 8865 4 78999999988766776666665 544 8999999999999999999999999999987643
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-64 Score=566.30 Aligned_cols=482 Identities=20% Similarity=0.223 Sum_probs=388.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+. .+||+||.++++++|..|.+. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 31 a~~~p~~~a~~~~~~--------~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl~ 102 (542)
T PRK06155 31 AERYPDRPLLVFGGT--------RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPIN 102 (542)
T ss_pred HHHCCCCeEEEeCCc--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEec
Confidence 478999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhC-C-CcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-P-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
|.++.+++..++++++++++++++.... ......... . ...+.+..... ... ...|.........
T Consensus 103 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~- 169 (542)
T PRK06155 103 TALRGPQLEHILRNSGARLLVVEAALLA------ALEAADPGDLPLPAVWLLDAPAS---VSV---PAGWSTAPLPPLD- 169 (542)
T ss_pred cccCHHHHHHHHHhcCceEEEEChhhHH------HHHHhcccccCcceEEEecCccc---ccc---ccccchhhhcccC-
Confidence 9999999999999999999999875431 111111111 1 12222221110 000 0111111000000
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcC
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (727)
.........++++++|+|||||||.||||+++|+++.+........+++++++++++..|++|..++..++.++..|
T Consensus 170 ---~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G 246 (542)
T PRK06155 170 ---APAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAG 246 (542)
T ss_pred ---CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcC
Confidence 01112234678999999999999999999999999988777777778999999999999999999988889999999
Q ss_pred cEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccc
Q 004860 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (727)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (727)
+++++.+ ..++..+++.|+++++|++.++|+++..|.+.........+++|.++.|| +++....++.+.+ +++++|
T Consensus 247 ~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~ 322 (542)
T PRK06155 247 ATYVLEP-RFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERF-GVDLLD 322 (542)
T ss_pred ceEEeeC-CCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEe
Confidence 9999876 45788999999999999999999999999887655556677899887666 4677777777665 678999
Q ss_pred cccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEec--------ccCCCCcccccccc
Q 004860 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFP--------LYLGASDRLLNADH 574 (727)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~--------~y~~~~~~~~~~~~ 574 (727)
.||+||++.++.... .....+++|.|++++.++|+|++++++|.|+. |||++.. ||++ +++.
T Consensus 323 ~YG~tE~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gei~v~~~~~~~~~~GY~~------~~~~ 392 (542)
T PRK06155 323 GYGSTETNFVIAVTH--GSQRPGSMGRLAPGFEARVVDEHDQELPDGEP--GELLLRADEPFAFATGYFG------MPEK 392 (542)
T ss_pred eecccccCccccCCC--CCCCCCCcCccCCCceEEEECCCCCCCCCCCc--eEEEEecCCccccchhhcC------CHHH
Confidence 999999987654322 23455789999999999999999999999985 9998832 3333 2334
Q ss_pred ccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCce
Q 004860 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (727)
Q Consensus 575 ~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~ 654 (727)
++..|. ..||+|||+|++++||+++|+||.||+||++|.+|+|.|||++|. +||+|.+++|++++++..+ +
T Consensus 393 ~~~~~~-------~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~~v~~~~~~-~ 463 (542)
T PRK06155 393 TVEAWR-------NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLL-SHPAVAAAAVFPVPSELGE-D 463 (542)
T ss_pred HHHhhc-------CCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeecccccC-c
Confidence 444442 239999999999999999999999999999999999999999996 8999999999999987777 7
Q ss_pred EEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHh
Q 004860 655 VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 718 (727)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 718 (727)
.++++++++.+...+..++++ +++++|++|++|..|+++++||+|++||++|++|++++-
T Consensus 464 ~~~~~v~~~~~~~~~~~~~~~----~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~ 523 (542)
T PRK06155 464 EVMAAVVLRDGTALEPVALVR----HCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGV 523 (542)
T ss_pred eEEEEEEECCCCCCCHHHHHH----HHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhcc
Confidence 889999988766666555555 467789999999999999999999999999999999763
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-64 Score=565.83 Aligned_cols=494 Identities=21% Similarity=0.199 Sum_probs=403.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+. .+||+||.++++++|+.|.+. +++||+|+++++|+++++++++||+++|++++|++
T Consensus 21 a~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~ 92 (523)
T PRK08316 21 ARRYPDKTALVFGDR--------SWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVN 92 (523)
T ss_pred HHHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecc
Confidence 368899999998876 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
+.++.+++..+++.++++++++++.... ......+......+.+.... ...........+.++......
T Consensus 93 ~~~~~~~i~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--- 161 (523)
T PRK08316 93 FMLTGEELAYILDHSGARAFLVDPALAP------TAEAALALLPVDTLILSLVL--GGREAPGGWLDFADWAEAGSV--- 161 (523)
T ss_pred cccCHHHHHHHHHhCCCCEEEEccchHH------HHHHHhhhcCccceeeeecc--cccccccchhhHHHHHhcCCC---
Confidence 9999999999999999999999875321 11111111111111111110 001111223445554433221
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHH-hHHhhhcCc
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGA 423 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~~G~ 423 (727)
........++++++++|||||||.||+|.++|+++++.+......+++.++|+++...|+.|..++.. ++.++..|+
T Consensus 162 --~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~ 239 (523)
T PRK08316 162 --AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGA 239 (523)
T ss_pred --ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCc
Confidence 11223456789999999999999999999999999988887777889999999999999999888743 556788999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccc
Q 004860 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (727)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (727)
++++.+ ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+.++.+....+.+.++++++++.
T Consensus 240 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 318 (523)
T PRK08316 240 TNVILD-APDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNC 318 (523)
T ss_pred eEEEec-CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeee
Confidence 999986 4578899999999999999999999999998766566778899999999999999999999888878899999
Q ss_pred ccccccccccccCCCC-CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-----cccCCCCccccccccccc
Q 004860 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEV 577 (727)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~~~~ 577 (727)
||+||++.+....... .....+++|+|+++++++|+|+++++++.|+. ||+++. .+|++ +++.++.
T Consensus 319 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gei~v~~~~~~~~y~~------~~~~~~~ 390 (523)
T PRK08316 319 YGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEV--GEIVHRSPQLMLGYWD------DPEKTAE 390 (523)
T ss_pred ecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCc--ceEEEECCchhhhhcC------CHHHHHH
Confidence 9999998755443332 22345789999999999999999999999986 999983 34444 3334444
Q ss_pred cccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
.|. ..||+|||+|++++||+++++||.||+||++|.+|+|.+||+.|. ++|+|.+++|++.+++..+ +.++
T Consensus 391 ~~~-------~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~ 461 (523)
T PRK08316 391 AFR-------GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALY-THPAVAEVAVIGLPDPKWI-EAVT 461 (523)
T ss_pred Hhh-------CCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHH-hCCChheEeEecccCcccC-CeEE
Confidence 442 239999999999999999999999999999999999999999995 8999999999999988777 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhc
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 722 (727)
++++++++...+.+.+ +++++++|++|++|..+++++++|+|++||++|++|++++.+.++
T Consensus 462 ~~v~~~~~~~~~~~~l----~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~~ 522 (523)
T PRK08316 462 AVVVPKAGATVTEDEL----IAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAFT 522 (523)
T ss_pred EEEEECCCCCCCHHHH----HHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhcc
Confidence 9999987654454444 445777899999999999999999999999999999999987654
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=581.64 Aligned_cols=504 Identities=19% Similarity=0.174 Sum_probs=374.4
Q ss_pred CCCCCCceEEEEecC-CCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 186 RRKEDNTVAIVWRED-RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 186 a~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
++++|+++|+.+... .+..+.+..+||+||+++++++|++|.++ +++||+|+|+++|+++|++++|||+++|+++|||
T Consensus 53 ~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl 132 (660)
T PLN02861 53 VKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPL 132 (660)
T ss_pred HHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEe
Confidence 478999999976310 01124456899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC--C-cEEEEcCCCCCCC---CCCCcCcccHHHHhc
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--L-KAIVLPAIGNDVG---IPLREQDLSWKDFLS 337 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~~~~~~~~---~~~~~~~~~~~~~~~ 337 (727)
+|.++.+++.++|++++++++|+++... +.........+ . .++.+........ ........+|.++..
T Consensus 133 ~~~~~~~~l~~il~~s~~~~v~~~~~~~------~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (660)
T PLN02861 133 YDTLGANAVEFIINHAEVSIAFVQESKI------SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSL 206 (660)
T ss_pred cCCCCHHHHHHHHHcCCCCEEEECHHHH------HHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHH
Confidence 9999999999999999999999976421 11111112111 1 2222221100000 000111245666654
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcC-----CCCCCEEEEecccccccch
Q 004860 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-----LKVGDVYCWPTNLGWVMGP 412 (727)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~-----~~~~d~~l~~~~~~~~~~~ 412 (727)
.... . .......++++++|+|||||||.||||++||++++..+......++ +.++|++++++|++|.++.
T Consensus 207 ~~~~---~--~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~ 281 (660)
T PLN02861 207 MGSL---D--CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQ 281 (660)
T ss_pred hCcc---c--CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHH
Confidence 3321 0 1112346799999999999999999999999999887765544433 4788999999999999887
Q ss_pred HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcC-----------------------------
Q 004860 413 VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN----------------------------- 463 (727)
Q Consensus 413 ~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~----------------------------- 463 (727)
...+.+++.|+++++.+ .++..+++.|+++++|+++++|++++.|....
T Consensus 282 ~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~ 359 (660)
T PLN02861 282 VIETYCISKGASIGFWQ--GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKG 359 (660)
T ss_pred HHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcC
Confidence 55556899999998874 46789999999999999999999999886410
Q ss_pred --------CCCCC-------Cc-cceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCcccccc
Q 004860 464 --------CLEGL-------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF 527 (727)
Q Consensus 464 --------~~~~~-------~l-~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~i 527 (727)
..... .+ ++||.+++||+++++++.+ +...++...++|.||+||+++.++..........+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsv 438 (660)
T PLN02861 360 LKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTV 438 (660)
T ss_pred CCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecccccCCCCCCc
Confidence 00000 01 4799999999999998755 4444444579999999999764443322222345789
Q ss_pred ccCCCCceEEEEC--CCC-CcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEE
Q 004860 528 STATMTAGLVILD--ECG-VPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599 (727)
Q Consensus 528 G~p~~~~~~~vld--~~~-~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~ 599 (727)
|+|+++++++|+| ++| ..++.+.. |||+| ..||++ +++.|++.|. .| ||+|||+|++
T Consensus 439 G~p~p~~ev~i~d~~~~g~~~~~~~~~--GEi~vrGp~v~~GY~~------~pe~T~~~f~-----dG--w~~TGDlg~~ 503 (660)
T PLN02861 439 GVPMTTIEARLESVPEMGYDALSDVPR--GEICLRGNTLFSGYHK------RQDLTEEVLI-----DG--WFHTGDIGEW 503 (660)
T ss_pred cCccCceEEEEEEccccCcccCCCCCc--eeEEEcCCcccccccC------CHHHHHhhhh-----cc--CcccCceEEE
Confidence 9999999999998 334 33344443 99988 456665 4446777774 13 9999999999
Q ss_pred ecCceEEEEeecCCeeec-CceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCC----------CC
Q 004860 600 TVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF----------TS 668 (727)
Q Consensus 600 ~~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~----------~~ 668 (727)
|+||+|+|+||+||+||+ +|++|+|.|||++|. +||.|.+|+|++.+ .+ +.++|+|++.... ..
T Consensus 504 d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~-~~p~V~~a~V~G~~---~~-~~~~A~vv~~~~~l~~~~~~~~~~~ 578 (660)
T PLN02861 504 QPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYS-RCPLIASIWVYGNS---FE-SFLVAVVVPDRQALEDWAANNNKTG 578 (660)
T ss_pred CCCCcEEEEeccccceEcCCCeEEcHHHHHHHHh-cCCCeeEEEEEecC---Cc-ceeEEEEEcCHHHHHHHHHHcCCCC
Confidence 999999999999999997 799999999999995 99999999999875 23 6899999986320 01
Q ss_pred ChH------HHHHHHHHHHHh-----hcCCCcccceEEEcC-CC-----CCCCCchhhHHHHHHHHhhhhcc
Q 004860 669 QPD------KLKMIFSKAIQS-----KLNPLFKVSLVKVVP-EF-----PRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 669 ~~~------~l~~~l~~~l~~-----~L~~~~~P~~i~~v~-~l-----P~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
+.. .....+.+.+.+ .|+.|.+++.|.+++ .+ .+|+++|+.|+.+.+.|++++++
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~ 650 (660)
T PLN02861 579 DFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQ 650 (660)
T ss_pred CHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHH
Confidence 111 122334444432 589999999998865 56 79999999999999999988874
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-64 Score=570.30 Aligned_cols=508 Identities=16% Similarity=0.177 Sum_probs=395.5
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
..+||++|+++.+. ..+.+||+||.++++++|++|.+ . +++||+|+++++|+++++++++||+++|++++|++
T Consensus 21 ~~~~~~~a~~~~~~-----~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~v~l~ 95 (576)
T PRK05620 21 TVHGDTTVTTWGGA-----EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLN 95 (576)
T ss_pred HhCCCceEEEEcCC-----ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEEeecc
Confidence 68999999998542 23589999999999999999997 6 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCC---CCCCCcCcccHHHHhccc
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDV---GIPLREQDLSWKDFLSSV 339 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~ 339 (727)
|.++.+++.+++++++++++|+++... ..........+. .++++....... .........+|.++....
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (576)
T PRK05620 96 KQLMNDQIVHIINHAEDEVIVADPRLA------EQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGR 169 (576)
T ss_pred cccCHHHHHHHHhccCCcEEEEChhhH------HHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcC
Confidence 999999999999999999999987432 112222222222 122222111000 000111234577776532
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhh--chhcCCCCCCEEEEecccccccchHHhHH
Q 004860 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (727)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (727)
.. ........++++++++|||||||.||||+++|+++....... ...+++.++|++++.+|+.|+++....+.
T Consensus 170 ~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~ 244 (576)
T PRK05620 170 ST-----VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLA 244 (576)
T ss_pred CC-----cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHH
Confidence 21 112233567899999999999999999999999986544322 23577899999999999999999887889
Q ss_pred hhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCC
Q 004860 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (727)
Q Consensus 418 ~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~ 497 (727)
++..|+++++.+...++..++++|+++++|++..+|+++..|+........+..+||.+++||+++++++.+++...+ +
T Consensus 245 ~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~ 323 (576)
T PRK05620 245 AFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY-G 323 (576)
T ss_pred HHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHh-C
Confidence 999999999987666888999999999999999999999988765433334456899999999999999988887665 5
Q ss_pred CcccccccccccccccccCCCCC---C----ccccccccCCCCceEEEECCCCCcCC--CCCCeeeeEEE-----ecccC
Q 004860 498 NAIIESCGGTELSSAYIQGSLLQ---P----QAFGAFSTATMTAGLVILDECGVPYP--DDQPCVGEVGL-----FPLYL 563 (727)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~---~----~~~~~iG~p~~~~~~~vld~~~~~~p--~G~~giGel~v-----~~~y~ 563 (727)
+++++.||+||++...+...... . ....++|++.++++++|+|+ +++++ .|. +|||++ ..||+
T Consensus 324 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~~~--~Gel~v~g~~~~~gY~ 400 (576)
T PRK05620 324 VDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTDRN--EGEIQVRGNWVTASYY 400 (576)
T ss_pred CceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-CccccCCCCC--ceEEEEEcCccccccc
Confidence 78999999999986544332211 0 12347899999999999998 77765 355 499998 45666
Q ss_pred CCCccccccccccccccccccC------CCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCC
Q 004860 564 GASDRLLNADHEEVYFRGMPMY------KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADES 637 (727)
Q Consensus 564 ~~~~~~~~~~~~~~~f~~~p~~------~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~ 637 (727)
+.++.. .......|..+++. ...+||+|||+|++++||+++|+||.||+||++|.+|+|.|||++|. +||.
T Consensus 401 ~~~~~t--~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~-~~p~ 477 (576)
T PRK05620 401 HSPTEE--GGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIM-AAPE 477 (576)
T ss_pred CCcccc--ccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHh-cCCC
Confidence 644311 01114455443321 12359999999999999999999999999999999999999999996 8999
Q ss_pred ceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHH
Q 004860 638 ILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI 717 (727)
Q Consensus 638 V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~ 717 (727)
|.+|+|++.+++..| +.++++++..++...+ +...+.|+++++++|++|++|+.|+++++||+|+|||++|++|++++
T Consensus 478 v~~~~vv~~~~~~~g-~~~~a~v~~~~~~~~~-~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~ 555 (576)
T PRK05620 478 VVECAVIGYPDDKWG-ERPLAVTVLAPGIEPT-RETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHL 555 (576)
T ss_pred ceEEEEEeccCCCcC-ceeEEEEEecCCCCcc-cccHHHHHHHHHhhCccccCCeEEEEeccCCCCCcccCcHHHHHHHH
Confidence 999999999998887 8899999988764432 12234566678889999999999999999999999999999999998
Q ss_pred hh
Q 004860 718 KH 719 (727)
Q Consensus 718 ~~ 719 (727)
++
T Consensus 556 ~~ 557 (576)
T PRK05620 556 AD 557 (576)
T ss_pred hc
Confidence 74
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-64 Score=561.06 Aligned_cols=464 Identities=23% Similarity=0.256 Sum_probs=384.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
+.++||++|+++.++ .+||+||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 12 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i~ 83 (483)
T PRK03640 12 AFLTPDRTAIEFEEK--------KVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLN 83 (483)
T ss_pred HHhCCCceEEEeCCe--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEecC
Confidence 478999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
+.++.+++..++++++++++++++..... .... ....|+++......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~---------~~~~---------------------~~~~~~~~~~~~~~--- 130 (483)
T PRK03640 84 TRLSREELLWQLDDAEVKCLITDDDFEAK---------LIPG---------------------ISVKFAELMNGPKE--- 130 (483)
T ss_pred cCCCHHHHHHHHHhCCCCEEEEcchhhHH---------Hhhh---------------------ccccHHHHhhcccc---
Confidence 99999999999999999999998743210 0000 01113333322111
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcE
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (727)
.........++++++++|||||||.||+|+++|+++...+......++++++|++++..|+.|..++..++.++..|++
T Consensus 131 -~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~ 209 (483)
T PRK03640 131 -EAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMR 209 (483)
T ss_pred -cCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCE
Confidence 0111223457899999999999999999999999988877766677899999999999999999988778899999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
+++.+ ..++..+++.|+++++|++.++|+++..|....... ....+||.+++||+++++...+++... ++++++.|
T Consensus 210 ~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~Y 285 (483)
T PRK03640 210 VVLVE-KFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSY 285 (483)
T ss_pred EEecC-CCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeee
Confidence 99987 467899999999999999999999999998653322 234689999999999999988877664 68899999
Q ss_pred cccccccccccCCCC-CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCcccccccccccc
Q 004860 505 GGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (727)
Q Consensus 505 G~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~ 578 (727)
|+||++..+...... .....+++|+|+++++++|.|+. +++|.|+. |||++ ..||++.+ +.+...
T Consensus 286 G~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~~-~~~~~g~~--Gel~v~g~~~~~gy~~~~------~~~~~~ 356 (483)
T PRK03640 286 GMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDG-VVVPPFEE--GEIVVKGPNVTKGYLNRE------DATRET 356 (483)
T ss_pred ccCcccccccccCcccccccCCCcccccCCcEEEEecCC-CcCCCCCc--eEEEEECcchhhhhcCCH------HHHHHH
Confidence 999987644333322 23456789999999999999864 89999996 99999 34555532 344444
Q ss_pred ccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEE
Q 004860 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (727)
Q Consensus 579 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a 658 (727)
|. . .||+|||++++++||+++++||+||+||++|.+|++.|||+++. .+|+|.+++|++.+++..+ +.+++
T Consensus 357 ~~-----~--~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~-~~~~v~~~~v~~~~~~~~~-~~~~~ 427 (483)
T PRK03640 357 FQ-----D--GWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLL-SHPGVAEAGVVGVPDDKWG-QVPVA 427 (483)
T ss_pred Hh-----c--CCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeCCCcccC-CceEE
Confidence 43 1 28999999999999999999999999999999999999999995 8999999999998887776 78888
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhh
Q 004860 659 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 659 ~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 719 (727)
+++... ..+.+++++ ++++.|++|++|..|+.+++||+|++||++|++|++++++
T Consensus 428 ~~~~~~--~~~~~~l~~----~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 428 FVVKSG--EVTEEELRH----FCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred EEEeCC--CCCHHHHHH----HHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence 888543 345555544 5778899999999999999999999999999999998864
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=559.84 Aligned_cols=481 Identities=21% Similarity=0.231 Sum_probs=391.8
Q ss_pred CCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCC
Q 004860 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (727)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~ 266 (727)
.+|+++|+.+.+. +.+||.||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.
T Consensus 14 ~~~~~~a~~~~~~-------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~~~ 86 (504)
T PRK07514 14 ADRDAPFIETPDG-------LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTA 86 (504)
T ss_pred hCCCCeEEEeCCC-------CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECCCC
Confidence 7899999987444 2899999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCc-EEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCC
Q 004860 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (727)
Q Consensus 267 ~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (727)
++.+++..++++++++++++++... .....+....... .+.+... ....+.+......
T Consensus 87 ~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~----- 145 (504)
T PRK07514 87 YTLAELDYFIGDAEPALVVCDPANF------AWLSKIAAAAGAPHVETLDAD----------GTGSLLEAAAAAP----- 145 (504)
T ss_pred CCHHHHHHHHHhCCCcEEEEccchh------HHHHHhhhccCCceEEEecCC----------CcccHHHhhhhcC-----
Confidence 9999999999999999999987532 1111221111111 2222111 0111222221111
Q ss_pred CCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcCcE
Q 004860 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (727)
Q Consensus 346 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~ 424 (727)
.........+++++||+|||||||.||+|+++|+++++.+......+++.++|++++..|+.|..++ +.++.++..|++
T Consensus 146 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 225 (504)
T PRK07514 146 DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGAS 225 (504)
T ss_pred cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcE
Confidence 1112234467899999999999999999999999999988877778889999999999999998887 457889999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
+++.+ ..++..+++.+ .++|++..+|+++..++.........++++|.+++||++++++..+++...+ ++++++.|
T Consensus 226 ~~~~~-~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~Y 301 (504)
T PRK07514 226 MIFLP-KFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERT-GHAILERY 301 (504)
T ss_pred EEECC-CCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeec
Confidence 99886 45778888888 3799999999999999887655566788999999999999999988888765 57899999
Q ss_pred cccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCcccccccccccc
Q 004860 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (727)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~ 578 (727)
|+||++...+. ........+++|.|+++++++|+| ++++++|.|+. |||++ ..||++ +++.+++.
T Consensus 302 G~tE~~~~~~~-~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~--Gel~i~~~~~~~gy~~------~~~~~~~~ 372 (504)
T PRK07514 302 GMTETNMNTSN-PYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEI--GMIEVKGPNVFKGYWR------MPEKTAEE 372 (504)
T ss_pred ccccccccccC-CccccccCcccccCCCCcEEEEEECCCCCCCCCCCc--eEEEEecCCccccccC------Cchhhhhh
Confidence 99998764332 222233456899999999999999 88999999986 99998 345555 33355556
Q ss_pred ccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEE
Q 004860 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (727)
Q Consensus 579 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a 658 (727)
|..+ .||+|||+|+++++|+++++||+||+||++|++|+|.|||+++. .+++|.+++|++.++...+ +.+++
T Consensus 373 ~~~~------~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~ 444 (504)
T PRK07514 373 FRAD------GFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEID-ELPGVVESAVIGVPHPDFG-EGVTA 444 (504)
T ss_pred cccC------CCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHH-hCCCeeEEEEEeCCCCCcC-ceEEE
Confidence 6532 29999999999999999999999999999999999999999995 8999999999999887777 88999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhh
Q 004860 659 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721 (727)
Q Consensus 659 ~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 721 (727)
+++..++...+.+++. +.++++|++|++|..+++++++|+|++||++|++|++++.+.+
T Consensus 445 ~~~~~~~~~~~~~~l~----~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~~~ 503 (504)
T PRK07514 445 VVVPKPGAALDEAAIL----AALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYADLF 503 (504)
T ss_pred EEEECCCCCCCHHHHH----HHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHhhc
Confidence 9998876555555544 4577788999999999999999999999999999999987654
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=563.98 Aligned_cols=484 Identities=19% Similarity=0.223 Sum_probs=386.9
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++.+|+++|+++.+. ++||+||.++++++|..|.+. +++|++|+++++|++++++++|||+++|+++++++
T Consensus 33 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~ 104 (527)
T TIGR02275 33 AARYPDAIAIICGNR--------QWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLAL 104 (527)
T ss_pred HHHCCCceEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEeccc
Confidence 368999999998766 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC-cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
+.++.+++.+++++++++++++++.... .........+....+. ...++.... . ........+.....
T Consensus 105 ~~~~~~~~~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~-- 173 (527)
T TIGR02275 105 FSHRKSELTAYAQQIEPALYIIDRAHSL-FDYDAFARQLQSKLPTLRNIIVAGQT-R-------VEAELFLWLESPAE-- 173 (527)
T ss_pred cccCHHHHHHHHHhcCCcEEEEcCcccc-cchHHHHHHHHhhCCcceEEEEecCC-C-------CcchhhHHhhCcCc--
Confidence 9999999999999999999999864310 0000011111111221 112221110 0 00011111111111
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchH--HhHHhhhc
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLN 421 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l~~ 421 (727)
........++++++++|||||||.||||+++|+++...+......+.++++|++++.+|+.|.+++. .++.++..
T Consensus 174 ---~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~ 250 (527)
T TIGR02275 174 ---PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYA 250 (527)
T ss_pred ---cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhc
Confidence 1112244678999999999999999999999999998888777788899999999999999988874 47889999
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......+++++|.+++||+++++++..++.+.+ +++++
T Consensus 251 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~ 328 (527)
T TIGR02275 251 GGCVVLAP-DPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQ 328 (527)
T ss_pred CCeEEECC-CCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEE
Confidence 99998865 46788899999999999999999999999877655566788999999999999999998887766 57899
Q ss_pred ccccccccccccccCCCCCCccccccccCC-CCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccc
Q 004860 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~ 575 (727)
+.||+||+++++...........+++|+|+ ++..++|+|++|+++|.|+. |||++ ..||++. ++.+
T Consensus 329 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~--Gei~v~g~~~~~gY~~~------~~~~ 400 (527)
T TIGR02275 329 QVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGET--GMLLTRGPYTFRGYYKA------PEHN 400 (527)
T ss_pred eeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCCCCc--eEEEecCCccchhhcCC------hhHh
Confidence 999999976543322222223446889999 48899999999999999986 99998 3455553 3345
Q ss_pred cccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceE
Q 004860 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (727)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~ 655 (727)
...|..+ .||+|||+|++++||++++.||.||+||++|++|+|.|||++|. .||+|.+++|++.++...+ +.
T Consensus 401 ~~~~~~d------g~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~ 472 (527)
T TIGR02275 401 AAAFDAE------GFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLL-AHPAVHDAALVSMPDELLG-EK 472 (527)
T ss_pred HhhcCcC------CCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHH-hCCCceEEEEEecCCcccc-cE
Confidence 4455432 39999999999999999999999999999999999999999995 9999999999999998877 89
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHh-hcCCCcccceEEEcCCCCCCCCchhhHHHHH
Q 004860 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714 (727)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 714 (727)
+++||+++++ ..+..++++ .+++ ++++|++|..++++++||+|++||++|+.|+
T Consensus 473 ~~a~vv~~~~-~~~~~~l~~----~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 473 SCAFIVVRDP-ALKAAQLRR----FLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred EEEEEEECCC-CCCHHHHHH----HHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 9999998765 344455554 5665 4999999999999999999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=556.40 Aligned_cols=470 Identities=21% Similarity=0.254 Sum_probs=380.6
Q ss_pred CCCCCCCceEEEE--ecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEe
Q 004860 185 HRRKEDNTVAIVW--REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261 (727)
Q Consensus 185 ~a~~~pd~~Al~~--~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~v 261 (727)
+++.+||++|+.+ .+. .+||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++
T Consensus 4 ~a~~~p~~~a~~~~~~~~--------~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v 75 (488)
T PRK09088 4 HARLQPQRLAAVDLALGR--------RWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYV 75 (488)
T ss_pred hhhhCCCceEEEecCCCc--------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEE
Confidence 3468899999986 333 899999999999999999999 99999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCC
Q 004860 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (727)
Q Consensus 262 pl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (727)
|+++.++.+++.+++++++++++|+++...... ....+++++......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~ 123 (488)
T PRK09088 76 PLNWRLSASELDALLQDAEPRLLLGDDAVAAGR--------------------------------TDVEDLAAFIASADA 123 (488)
T ss_pred eeCccCCHHHHHHHHHhCCCCEEEEcchhhccc--------------------------------ccccchhhhhhhccc
Confidence 999999999999999999999999986432100 001112222111110
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchH-HhHHhhh
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFL 420 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~ 420 (727)
. .........++++++++|||||||.||+|+++|+++...+........+.++|++++..|+.|.+++. .++.++.
T Consensus 124 ~---~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~ 200 (488)
T PRK09088 124 L---EPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLA 200 (488)
T ss_pred c---ccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHh
Confidence 0 00111233568899999999999999999999999988777666667788999999999999998884 4667888
Q ss_pred cCcEEEEecCCCChhhHHHHHH--HhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCC
Q 004860 421 NGATLALYQGSPLERSFGKFVQ--DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (727)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~--~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (727)
.|+++++.+ ...+..++..+. ++++|++.++|+++..+.........++++||.+++||++++......+... ++
T Consensus 201 ~g~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~ 277 (488)
T PRK09088 201 VGGSILVSN-GFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GI 277 (488)
T ss_pred cCCEEEEcC-CCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CC
Confidence 999998875 456677777775 4799999999999999987654445567899999999999998877666543 67
Q ss_pred cccccccccccccccccCCC--CCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-----cccCCCCccccc
Q 004860 499 AIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLN 571 (727)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~ 571 (727)
++++.||+||++..+..... ......+++|+|++++.++|+|+++++++.|+. |||++. .||++.
T Consensus 278 ~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gY~~~------ 349 (488)
T PRK09088 278 PMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVP--GELLLRGPNLSPGYWRR------ 349 (488)
T ss_pred ceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCc--eEEEEECCccchhhcCC------
Confidence 89999999999864432211 112345789999999999999999999999986 999993 455543
Q ss_pred cccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCC
Q 004860 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (727)
Q Consensus 572 ~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~ 651 (727)
++.++..|.. ..||+|||+|+++++|++++.||.||+||++|++|+|.|||++|. .+|+|.+++|++.+++..
T Consensus 350 ~~~~~~~~~~------~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~-~~~~v~~~~v~~~~~~~~ 422 (488)
T PRK09088 350 PQATARAFTG------DGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLA-DHPGIRECAVVGMADAQW 422 (488)
T ss_pred hhhhhhhhcC------CCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHH-hCCCcceEEEEeCCCccC
Confidence 3344444432 249999999999999999999999999999999999999999995 899999999999988776
Q ss_pred CceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 652 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 652 ~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
+ +..+++|+++++...+.+++ ++.+++.+++|++|..|+++++||+|++||++|++|++++.+.
T Consensus 423 g-~~~~~~v~~~~~~~~~~~~l----~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~~ 486 (488)
T PRK09088 423 G-EVGYLAIVPADGAPLDLERI----RSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAAG 486 (488)
T ss_pred C-ceeEEEEEECCCCCCCHHHH----HHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHhc
Confidence 7 78889999876554444444 4457778899999999999999999999999999999988654
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-63 Score=564.12 Aligned_cols=497 Identities=22% Similarity=0.262 Sum_probs=395.0
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
+++||++|+++.++ +++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|
T Consensus 34 ~~~pd~~a~~~~~~-------~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 106 (547)
T PRK06087 34 RAMPDKIAVVDNHG-------ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLP 106 (547)
T ss_pred HHCCCceEEEcCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccch
Confidence 67999999997652 2899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
.++.+++.+++++++++++++++..... ...+.........+. .++.+..... .....++.+++.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-- 177 (547)
T PRK06087 107 SWREAELVWVLNKCQAKMFFAPTLFKQT-RPVDLILPLQNQLPQLQQIVGVDKLAP------ATSSLSLSQIIADYEP-- 177 (547)
T ss_pred hcCHHHHHHHHHhcCCeEEEEecccccc-cHHHHHHHHHhhCCCCcEEEEeCCcCC------CcCccCHHHHhccCCc--
Confidence 9999999999999999999998643211 111111122222222 2222221110 0122345555443221
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcC
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G 422 (727)
........++++++|+|||||||.||||+++|++++.........+++.++|++++..|+.|.+++ ..++.++..|
T Consensus 178 ---~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g 254 (547)
T PRK06087 178 ---LTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIG 254 (547)
T ss_pred ---ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcC
Confidence 011223467899999999999999999999999998887777777889999999999999999887 4578889999
Q ss_pred cEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccc
Q 004860 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (727)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (727)
+++++.+ ..++..+++.|+++++|++..+|+.+..++........++++||.+++||+++++++.+.+... ++++++
T Consensus 255 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~ 331 (547)
T PRK06087 255 ARSVLLD-IFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GIKLLS 331 (547)
T ss_pred CEEEecC-CCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEE
Confidence 9999876 4678899999999999999988777777766544455678899999999999999988776653 789999
Q ss_pred cccccccccccccCCCCC-CccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCcccccccccc
Q 004860 503 SCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEE 576 (727)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~ 576 (727)
.||+||++.......... ....+++|+|++++.++|+|++++++|.|+. ||+++ ..||++. ++.+.
T Consensus 332 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~gy~~~------~~~~~ 403 (547)
T PRK06087 332 VYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCE--GEEASRGPNVFMGYLDE------PELTA 403 (547)
T ss_pred EecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCc--ceEEEecccccccccCC------HHHHH
Confidence 999999986544332211 1234578999999999999999999999986 99988 3455553 23444
Q ss_pred ccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEE
Q 004860 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (727)
Q Consensus 577 ~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l 656 (727)
..|.. ..||+|||+++++++|+++++||.||+||++|.+|+|.+||++|. .+|+|.+++|++.+++..+ +++
T Consensus 404 ~~~~~------~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~~ 475 (547)
T PRK06087 404 RALDE------EGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILL-QHPKIHDACVVAMPDERLG-ERS 475 (547)
T ss_pred HHhCC------CCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHH-hCCCeeEEEEEecCCCCcC-ceE
Confidence 44432 239999999999999999999999999999999999999999996 8999999999999988777 899
Q ss_pred EEEEEecC-CCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhccc
Q 004860 657 VIFVVLKK-GFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVR 724 (727)
Q Consensus 657 ~a~vv~~~-~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 724 (727)
+++++..+ +...+.+++.+++. ++.|++|++|..|.++++||+|+|||++|+.|++++.+.+...
T Consensus 476 ~~~v~~~~~~~~~~~~~~~~~~~---~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~~~~ 541 (547)
T PRK06087 476 CAYVVLKAPHHSLTLEEVVAFFS---RKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRLTQD 541 (547)
T ss_pred EEEEEECCCCCCCCHHHHHHHHH---hccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHhhhh
Confidence 99999876 33444444444322 3689999999999999999999999999999999998886654
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-63 Score=560.50 Aligned_cols=486 Identities=19% Similarity=0.230 Sum_probs=391.2
Q ss_pred CCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCC
Q 004860 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (727)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~ 268 (727)
||++|+++.+. .+||+||.++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++++++..+
T Consensus 37 p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~ 108 (536)
T PRK10946 37 SDAIAVICGER--------QFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQ 108 (536)
T ss_pred CCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCcccc
Confidence 99999998776 899999999999999999999 999999999999999999999999999998888777788
Q ss_pred HHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC-cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCC
Q 004860 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (727)
Q Consensus 269 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (727)
..++..++++++++++++++.... ...-.....+....+. ..+++... .....+.+.+..... .
T Consensus 109 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~ 173 (536)
T PRK10946 109 RSELNAYASQIEPALLIADRQHAL-FSDDDFLNTLVAEHSSLRVVLLLND---------DGEHSLDDAINHPAE-----D 173 (536)
T ss_pred HHHHHHHHhhcCCCEEEEeccccc-cchHHHHHHHHhhCCCceEEEEecC---------CCCccHHHHhhCccc-----c
Confidence 889999999999999999864210 0000111222222222 22222211 112234444433221 1
Q ss_pred CCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchH--HhHHhhhcCcEE
Q 004860 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLNGATL 425 (727)
Q Consensus 348 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l~~G~~l 425 (727)
.......++++++++|||||||.||||+++|+++...+......++++++|++++..|+.|.+++. .++.+|..|+++
T Consensus 174 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~ 253 (536)
T PRK10946 174 FTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTV 253 (536)
T ss_pred cccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEE
Confidence 112344678999999999999999999999999999888887888999999999999999987763 578899999999
Q ss_pred EEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhc--CCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccc
Q 004860 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (727)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~--~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (727)
++.+ ..++..++++++++++|++.++|+++..|++. .......+++||.+++||+++++++.+.+.+.+ ++++++.
T Consensus 254 ~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~ 331 (536)
T PRK10946 254 VLAP-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQV 331 (536)
T ss_pred EECC-CCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEe
Confidence 8865 45778899999999999999999999999875 222334578999999999999999988887665 6899999
Q ss_pred ccccccccccccCCCCCCccccccccCC-CCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccc
Q 004860 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (727)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~ 577 (727)
||+||+++.++..........+++|+|+ +++.++|+|+++++++.|+. |||++ ..||++. ++.+..
T Consensus 332 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g~~~~~GY~~~------~~~t~~ 403 (536)
T PRK10946 332 FGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEV--GRLMTRGPYTFRGYYKS------PQHNAS 403 (536)
T ss_pred ecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCCCc--cEEEEecCccchhhcCC------cccchh
Confidence 9999976544332222223456899998 78999999999999999996 99998 4556653 345666
Q ss_pred cccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
.|..+ +||+|||+|++++||++++.||.||+||++|++|+|.|||++|. .||+|.+++|++.++...+ +.++
T Consensus 404 ~~~~d------~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~ 475 (536)
T PRK10946 404 AFDAN------GFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLL-RHPAVIHAALVSMEDELMG-EKSC 475 (536)
T ss_pred hcccC------CceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHH-hCCCcceEEEEcCCCcccC-ceEE
Confidence 66543 38999999999999999999999999999999999999999996 9999999999999988777 8899
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhh-cCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhc
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~-L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 722 (727)
++++++++ .+.++++++ +++. |++|++|..+++++++|+|++||++|++|++++.....
T Consensus 476 a~vv~~~~--~~~~~l~~~----~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~~~ 535 (536)
T PRK10946 476 AFLVVKEP--LKAVQLRRF----LREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRAS 535 (536)
T ss_pred EEEEeCCC--CCHHHHHHH----HHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhhcc
Confidence 99998764 555555554 5554 99999999999999999999999999999998876543
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-63 Score=560.32 Aligned_cols=495 Identities=19% Similarity=0.239 Sum_probs=390.9
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|++.... +..+++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 20 a~~~~~~~~~~~~~~----~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v~l~ 95 (542)
T PRK06018 20 ARIHGNREVVTRSVE----GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVN 95 (542)
T ss_pred HHhCCCceEEEeecc----CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEeeccc
Confidence 478999999985322 2235899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
|.++.+++..+++++++++++++..+. +.+..+....+. ..+++..... .......+...|.+++.....
T Consensus 96 ~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 167 (542)
T PRK06018 96 PRLFPEQIAWIINHAEDRVVITDLTFV------PILEKIADKLPSVERYVVLTDAAH-MPQTTLKNAVAYEEWIAEADG- 167 (542)
T ss_pred cccCHHHHHHHHhccCCCEEEEccccH------HHHHHHHhhCCCccEEEEeccccc-ccccCccccccHHHHhccCCc-
Confidence 999999999999999999999987532 222222222221 2222221111 100111123356665544321
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHH-H-HHHhhchhcCCCCCCEEEEecccccccchHHhHHhhh
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-R-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~-~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~ 420 (727)
........++++++++|||||||.||||++||++.+ + ........+++..+|+++...|+.|+.++...+.++.
T Consensus 168 ----~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~ 243 (542)
T PRK06018 168 ----DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPS 243 (542)
T ss_pred ----ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhh
Confidence 111223466889999999999999999999999743 2 2233345678899999999999999888766778899
Q ss_pred cCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
.|+++++.....++..++++++++++|++.++|+++..|.+.......++++||.+++|||+++++..+++.+ .++++
T Consensus 244 ~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~--~~~~~ 321 (542)
T PRK06018 244 MGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED--MGVEV 321 (542)
T ss_pred cCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH--hCCCe
Confidence 9999998765667888999999999999999999999998765555567889999999999999999988887 47899
Q ss_pred cccccccccccccccCCCCCC----------ccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-----cccCCC
Q 004860 501 IESCGGTELSSAYIQGSLLQP----------QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGA 565 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~----------~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~ 565 (727)
++.||+||++.+.+.+..... ....++|+|.++++++|+|++++++|.+...+||+++. .||++
T Consensus 322 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~- 400 (542)
T PRK06018 322 RHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYR- 400 (542)
T ss_pred EeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCCcchhhhc-
Confidence 999999999865543321110 11357899999999999999999998753235999983 33333
Q ss_pred CccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEe
Q 004860 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS 645 (727)
Q Consensus 566 ~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~ 645 (727)
. +...+. ...||+|||++++++||++++.||.||+||++|++|++.|||+++. +||+|.+|+|++
T Consensus 401 ------~--~~~~~~------~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~ 465 (542)
T PRK06018 401 ------V--DGEILD------DDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAV-GHPKVAEAAVIG 465 (542)
T ss_pred ------C--cccEec------CCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHH-hCCcceeEEEEe
Confidence 1 111221 2349999999999999999999999999999999999999999995 899999999999
Q ss_pred ecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhh
Q 004860 646 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 646 ~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 719 (727)
.+++..+ +.++++|++.++...+.+++.+ .++++|++|++|..++++++||+|++||++|++|++++.+
T Consensus 466 ~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~----~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~ 534 (542)
T PRK06018 466 VYHPKWD-ERPLLIVQLKPGETATREEILK----YMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALREQFKD 534 (542)
T ss_pred ccCCCcC-ceeEEEEEeCCCCCCCHHHHHH----HHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHHHHhc
Confidence 9988777 8899999988776666555554 5667899999999999999999999999999999999876
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=562.76 Aligned_cols=499 Identities=20% Similarity=0.206 Sum_probs=401.2
Q ss_pred ccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 004860 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (727)
Q Consensus 173 ~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~l 251 (727)
.|..+.... .++.+||++|+++.+. .+||.||.++++++|++|.+. +++||+|+|+++|+++++++++
T Consensus 17 ~n~~~~~~~---~a~~~~~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~ 85 (542)
T PRK07786 17 QNWVNQLAR---HALMQPDAPALRFLGN--------TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL 85 (542)
T ss_pred cCHHHHHHH---HHHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 355544332 2367899999998877 899999999999999999999 9999999999999999999999
Q ss_pred HHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCc
Q 004860 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQD 329 (727)
Q Consensus 252 A~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~ 329 (727)
||+++|++++|+++.++.+++..++++++++++++++... +.........+. ..+++... ...+.
T Consensus 86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 152 (542)
T PRK07786 86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVAGGS-------SDDSV 152 (542)
T ss_pred HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchH------HHHHHhhhccCccceEEEecCC-------Ccccc
Confidence 9999999999999999999999999999999999987532 111111111111 12222110 01123
Q ss_pred ccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCC-CCCCEEEEeccccc
Q 004860 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL-KVGDVYCWPTNLGW 408 (727)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~~ 408 (727)
.++.+++..... .........+++++++|||||||.||||+++|+++.+.+......+++ ..++++++..|+.|
T Consensus 153 ~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (542)
T PRK07786 153 LGYEDLLAEAGP-----AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFH 227 (542)
T ss_pred cCHHHHhhccCC-----CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHH
Confidence 456666543322 112223456789999999999999999999999998888776666777 67889999999999
Q ss_pred ccchHHhHHhhhcCcEEEEecC-CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhh
Q 004860 409 VMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487 (727)
Q Consensus 409 ~~~~~~~~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~ 487 (727)
.+++..++.++..|+++++.+. ..++..+++.|+++++|+++++|+++..|.........+ .++|.+++||++++++.
T Consensus 228 ~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~ 306 (542)
T PRK07786 228 IAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTL 306 (542)
T ss_pred HHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHH
Confidence 9888889999999999999752 457889999999999999999999999998765433333 37999999999999999
Q ss_pred HHHHHhhCCCCcccccccccccccccccCCCC-CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecc
Q 004860 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPL 561 (727)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~ 561 (727)
.+++.+.++++++++.||+||++...+..... .....+++|+|++++.++|+|+++++++.|+. |||++ ..|
T Consensus 307 ~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~g 384 (542)
T PRK07786 307 LRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEV--GEIVYRAPTLMSG 384 (542)
T ss_pred HHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCCc--eEEEEEChhhhhh
Confidence 99999888889999999999998654332221 12344689999999999999999999999985 99998 355
Q ss_pred cCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceee
Q 004860 562 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILET 641 (727)
Q Consensus 562 y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a 641 (727)
|++. ++.+...|. . .||+|||++++++||+++++||.||+||++|.+|++.|||++|. +||.|.++
T Consensus 385 y~~~------~~~~~~~f~-----~--~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~ 450 (542)
T PRK07786 385 YWNN------PEATAEAFA-----G--GWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLA-SHPDIVEV 450 (542)
T ss_pred hcCC------HHHHHHHhh-----C--CcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHH-hCCCccEE
Confidence 5553 334444453 1 29999999999999999999999999999999999999999995 89999999
Q ss_pred EEEeecCCCCCceEEEEEEEecCCCC-CChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 642 AAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 642 ~vv~~~~~~~~~~~l~a~vv~~~~~~-~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
+|++.++...+ +.++++++..++.. ... +.+++.+++++++|++|..++++++||+|++||++|++|++++.+.
T Consensus 451 ~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~----~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~ 525 (542)
T PRK07786 451 AVIGRADEKWG-EVPVAVAAVRNDDAALTL----EDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGAC 525 (542)
T ss_pred EEEeccCcccC-ceEEEEEEECCCCCCCCH----HHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhh
Confidence 99998887777 88999998876432 333 3455568888999999999999999999999999999999998766
Q ss_pred hc
Q 004860 721 LS 722 (727)
Q Consensus 721 ~~ 722 (727)
..
T Consensus 526 ~~ 527 (542)
T PRK07786 526 VN 527 (542)
T ss_pred hc
Confidence 44
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=558.60 Aligned_cols=482 Identities=19% Similarity=0.187 Sum_probs=374.7
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+|+++|+++|+++.+.+ .++||+||.++++++|+.|.++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 6 ~a~~~p~~~a~~~~~~~------~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l 79 (501)
T PRK13390 6 HAQIAPDRPAVIVAETG------EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAI 79 (501)
T ss_pred hhhhCCCCcEEEecCCC------eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEecc
Confidence 35789999999875321 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
++.++++++.+++++++++++++++.... ......... ...+.+.. . .....++++.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~-~~~~~~~~--~------~~~~~~~~~~~~~~~~-- 142 (501)
T PRK13390 80 NHHLTAPEADYIVGDSGARVLVASAALDG------LAAKVGADL-PLRLSFGG--E------IDGFGSFEAALAGAGP-- 142 (501)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEcchhhh------HHHHhhhcc-ceEEEecC--c------ccccccHHHHhcccCC--
Confidence 99999999999999999999999764310 001110000 00111110 0 0112233333221110
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEe--cChHHHHHH----HhhchhcCCCCCCEEEEecccccccchHHhHH
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPW--TQLSSIRCT----AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~--th~~l~~~~----~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (727)
. .....++++|+|||||||.||||++ +|.++.... ......+++..+|++++.+|++|+.++...+.
T Consensus 143 ------~-~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~ 215 (501)
T PRK13390 143 ------R-LTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSM 215 (501)
T ss_pred ------C-CCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHH
Confidence 0 0112357999999999999999995 555554321 11233567889999999999999988754555
Q ss_pred hhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhC
Q 004860 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (727)
Q Consensus 418 ~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~ 495 (727)
.+..|+++++.+ ..++..+++.|+++++|++.++|+++..|..... ....+++++|.+++||++++++..+.+.+.+
T Consensus 216 ~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~ 294 (501)
T PRK13390 216 VHALGGTVVLAK-RFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL 294 (501)
T ss_pred HHhcCceEEEcC-CcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc
Confidence 677899998876 4578899999999999999999999999886532 2345678999999999999999888877655
Q ss_pred CCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-----cccCCCCcccc
Q 004860 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLL 570 (727)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~ 570 (727)
+.++++.||+||++.++...........+++|+|+++ .++|+|+++++++.|+. |||++. .||++
T Consensus 295 -~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------ 364 (501)
T PRK13390 295 -GPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPAGRI--GTVYFERDRLPFRYLN------ 364 (501)
T ss_pred -CCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECCCCCCCCCCCc--eEEEEecCCccccccC------
Confidence 5789999999999864433222222345689999999 79999999999999996 999983 34544
Q ss_pred ccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCC
Q 004860 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (727)
Q Consensus 571 ~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~ 650 (727)
+++.++..|.. .+..||+|||+|++++||++++.||.|++||++|++|+|.|||++|. .||+|.+++|++.+++.
T Consensus 365 ~~~~t~~~~~~----~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~-~~~~v~~~~v~~~~~~~ 439 (501)
T PRK13390 365 DPEKTAAAQHP----AHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALT-MHPAVHDVAVIGVPDPE 439 (501)
T ss_pred ChhhhHHhhcc----CCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHH-hCCCeeEEEEEeccCcc
Confidence 33345444432 12249999999999999999999999999999999999999999996 89999999999999988
Q ss_pred CCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHH
Q 004860 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714 (727)
Q Consensus 651 ~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 714 (727)
.+ +.+++++++..+...+ +.+.+.+++.++++|+.|++|..++++++||+|++||++|++|+
T Consensus 440 ~~-e~~~~~v~~~~~~~~~-~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 440 MG-EQVKAVIQLVEGIRGS-DELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred cC-ceeEEEEEecCCCCcc-hhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 77 8999999987654433 33445677788899999999999999999999999999999874
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-63 Score=563.92 Aligned_cols=491 Identities=20% Similarity=0.221 Sum_probs=383.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
++++|+++|+++.+. ++||.||+++++++|++|.+ . +++||+|+++++|++++++++|||+++|++++|+
T Consensus 34 ~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~~ 105 (562)
T PRK12492 34 CKKFADRPAFSNLGV--------TLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNT 105 (562)
T ss_pred HHhCCCCeeEecCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEecc
Confidence 468999999987665 89999999999999999997 5 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEE---------------cC----CCCCCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVL---------------PA----IGNDVGIP 324 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------------~~----~~~~~~~~ 324 (727)
+|.++.+++.+++++++++++++++..... ...+........... .. ........
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (562)
T PRK12492 106 NPLYTAREMRHQFKDSGARALVYLNMFGKL------VQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAY 179 (562)
T ss_pred CccCCHHHHHHHHhccCceEEEeccccchH------HHHhhhccCceEEEeechhhccccccchhccccccccccccccc
Confidence 999999999999999999999997643211 111111000000000 00 00000000
Q ss_pred CCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcC---------CC
Q 004860 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID---------LK 395 (727)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~---------~~ 395 (727)
......+|++....... ..........+++++|+|||||||.||||+++|+++.+.+......+. +.
T Consensus 180 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 255 (562)
T PRK12492 180 HLPQAVPFKQALRQGRG----LSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMK 255 (562)
T ss_pred CCcccccHHHHHhccCC----CCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccccccc
Confidence 01122456555433221 111123345689999999999999999999999998776654433332 23
Q ss_pred CC-CEEEEecccccccch-HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccce
Q 004860 396 VG-DVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473 (727)
Q Consensus 396 ~~-d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~L 473 (727)
.+ ++++...|+.|.++. +.++..+..|+++++.....++..+++.|+++++|++..+|+++..|.........+++++
T Consensus 256 ~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l 335 (562)
T PRK12492 256 EGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSAL 335 (562)
T ss_pred CCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccce
Confidence 33 467888999999887 4466678889888877655577889999999999999999999999988765556678899
Q ss_pred eEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCee
Q 004860 474 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553 (727)
Q Consensus 474 r~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~gi 553 (727)
|.+++||+++++.+.+++.+.+ ++++++.||+||++.+++..........+++|+|+++++++|+|++++++|.|+.
T Consensus 336 r~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~~-- 412 (562)
T PRK12492 336 KLTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGER-- 412 (562)
T ss_pred eEEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCCCCCc--
Confidence 9999999999999988887654 6899999999999876554433333345789999999999999999999999986
Q ss_pred eeEEEe-----cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHH
Q 004860 554 GEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628 (727)
Q Consensus 554 Gel~v~-----~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE 628 (727)
|||++. .||++. ++.++..|.. +.||+|||+|+++++|+++|.||.||+||++|++|+|.|||
T Consensus 413 Gel~v~g~~~~~gY~~~------~~~t~~~~~~------~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE 480 (562)
T PRK12492 413 GELCIKGPQVMKGYWQQ------PEATAEALDA------EGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIE 480 (562)
T ss_pred eEEEEeCCccccccccC------chhhhhcccC------CCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHH
Confidence 999983 455553 3355555542 23999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchh
Q 004860 629 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL 708 (727)
Q Consensus 629 ~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKv 708 (727)
++|. .||.|.+++|++.++...+ +.+++++++.++ ..+.++ +++.++++|++|++|..++++++||+|++||+
T Consensus 481 ~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~-~~~~~~----i~~~~~~~l~~~~~P~~i~~~~~~P~t~~GK~ 553 (562)
T PRK12492 481 DVVM-AHPKVANCAAIGVPDERSG-EAVKLFVVARDP-GLSVEE----LKAYCKENFTGYKVPKHIVLRDSLPMTPVGKI 553 (562)
T ss_pred HHHH-hCCCeeEEEEEeccCCCCC-ceEEEEEEeCCC-CCCHHH----HHHHHHHhcccccCCcEEEEeccCCCCCCCce
Confidence 9996 8999999999999887777 889999887643 233344 44557788999999999999999999999999
Q ss_pred hHHHHHHH
Q 004860 709 LRRVLRDQ 716 (727)
Q Consensus 709 dR~~L~~~ 716 (727)
+|++|+++
T Consensus 554 ~r~~L~~~ 561 (562)
T PRK12492 554 LRRELRDI 561 (562)
T ss_pred eHHHHHhh
Confidence 99999875
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-63 Score=558.43 Aligned_cols=488 Identities=18% Similarity=0.202 Sum_probs=386.5
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+. .+.++.+||+||.++++++|+.|.++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 17 a~~~p~~~a~~~~~~---~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~l~ 93 (517)
T PRK08008 17 ADVYGHKTALIFESS---GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPIN 93 (517)
T ss_pred HHHCCCceEEEcccC---CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEEcC
Confidence 368999999998653 23446899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhC---CCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (727)
|+++.+++.+++++++++++++++... +.+..+.+.. ...+++..... .......++.+.......
T Consensus 94 ~~~~~~~l~~~l~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 162 (517)
T PRK08008 94 ARLLREESAWILQNSQASLLVTSAQFY------PMYRQIQQEDATPLRHICLTRVAL-----PADDGVSSFTQLKAQQPA 162 (517)
T ss_pred cccCHHHHHHHHHhcCceEEEEecchh------HHHHHHHhhccccCcEEEEecCCC-----cccccccCHHHHhccCCc
Confidence 999999999999999999999987532 2222222221 11222222110 011123345544333221
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhh
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~ 420 (727)
.........++++++++|||||||.||||+++|++++...........+.+++++++..|+.|..+. ..++.++.
T Consensus 163 ----~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 238 (517)
T PRK08008 163 ----TLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFS 238 (517)
T ss_pred ----cccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHh
Confidence 0111223456899999999999999999999999987654433334467889999999998887654 56788999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
.|+++++.+ ..++..+++.|+++++|++.++|++++.+............+++.+.+++ ++++....++.+.+ ++++
T Consensus 239 ~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~ 315 (517)
T PRK08008 239 AGATFVLLE-KYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFEERF-GVRL 315 (517)
T ss_pred cCcEEEEcc-ccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHHHHh-CCeE
Confidence 999999986 56788999999999999999999999998876543333456788877765 67777777776654 6899
Q ss_pred cccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEec--------ccCCCCcccccc
Q 004860 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFP--------LYLGASDRLLNA 572 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~--------~y~~~~~~~~~~ 572 (727)
++.||+||++..++...........++|+|+++++++|+|+++++++.|+. |||++.. ||++ ++
T Consensus 316 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~~~~gy~~------~~ 387 (517)
T PRK08008 316 LTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEI--GEICIKGVPGKTIFKEYYL------DP 387 (517)
T ss_pred EeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCc--ceEEEeCCCCcchhhhHhC------Ch
Confidence 999999999865554444344455689999999999999999999999986 9999842 4444 33
Q ss_pred ccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCC
Q 004860 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (727)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~ 652 (727)
+.+++.|..+ .||+|||+|++++||+++++||.||+||++|++|+|.|||+++. .||.|.+++|++.++...+
T Consensus 388 ~~~~~~~~~~------g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~-~~~~v~~~~v~g~~~~~~~ 460 (517)
T PRK08008 388 KATAKVLEAD------GWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIA-THPKIQDIVVVGIKDSIRD 460 (517)
T ss_pred HHHhhcccCC------CCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHH-hCCceeeEEEEccCCCCCC
Confidence 4556666532 29999999999999999999999999999999999999999995 9999999999999988776
Q ss_pred ceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHH
Q 004860 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714 (727)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 714 (727)
+.++++|+++++...+.+++++ +++++|++|++|..++++++||+|++||++|+.|+
T Consensus 461 -~~~~~~v~~~~~~~~~~~~l~~----~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 461 -EAIKAFVVLNEGETLSEEEFFA----FCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred -ceEEEEEEECCCCCCCHHHHHH----HHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 8999999998765555555554 56778999999999999999999999999999874
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=557.27 Aligned_cols=493 Identities=20% Similarity=0.184 Sum_probs=387.1
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+.+.++ .+||.||+++++++|+.|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 13 a~~~p~~~a~~~~~~--------~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l~ 84 (533)
T PRK07798 13 ADAVPDRVALVCGDR--------RLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVN 84 (533)
T ss_pred HHhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEecC
Confidence 478999999999766 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCc--EEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
+.++.+++.+++++++++++++++... .....+....+.. .+.+..... .....+..+|.+++.....
T Consensus 85 ~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~- 154 (533)
T PRK07798 85 YRYVEDELRYLLDDSDAVALVYEREFA------PRVAEVLPRLPKLRTLVVVEDGSG---NDLLPGAVDYEDALAAGSP- 154 (533)
T ss_pred cCCCHHHHHHHHhhcCCCEEEEchhhH------HHHHHHhccCCCccEEEEecCCcc---cccCCccccHHHHHhccCC-
Confidence 999999999999999999999987432 1112222222222 222221111 1111134567776654322
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch---------hcCC------CCCCEEEEecccc
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---------HIDL------KVGDVYCWPTNLG 407 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~---------~~~~------~~~d~~l~~~~~~ 407 (727)
...... ...+.++++|||||||.||||+++|+++......... ...+ ..+++++..+|+.
T Consensus 155 ----~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 229 (533)
T PRK07798 155 ----ERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLM 229 (533)
T ss_pred ----cCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchh
Confidence 011111 2234579999999999999999999998765443211 1112 5778999999999
Q ss_pred cccchHHhHHhhhcCcEEEEecC-CCChhhHHHHHHHhCCCEEEechHHHHH-HHhcCC-CCCCCccceeEEEeecCCCC
Q 004860 408 WVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKA-WRNTNC-LEGLDWTKIRSFASTGETSN 484 (727)
Q Consensus 408 ~~~~~~~~~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~-l~~~~~-~~~~~l~~Lr~i~~gGe~l~ 484 (727)
|+.+++.++.+|..|+++++.+. ..++..+++.|+++++|++.++|..+.. +..... ....+++++|.+++||++++
T Consensus 230 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~ 309 (533)
T PRK07798 230 HGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFS 309 (533)
T ss_pred hhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCC
Confidence 99999999999999999999873 4578899999999999999999865533 333221 23456789999999999999
Q ss_pred hhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccc--cCCCCceEEEECCCCCcCCCCCCeeeeEEEec--
Q 004860 485 VDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS--TATMTAGLVILDECGVPYPDDQPCVGEVGLFP-- 560 (727)
Q Consensus 485 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG--~p~~~~~~~vld~~~~~~p~G~~giGel~v~~-- 560 (727)
+....++.+.++++.+++.||+||++.+......... ...| ++.++..++|+|+++++++.|+.+.|+++.++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~---~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~l~~~~~~ 386 (533)
T PRK07798 310 PSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKGA---VHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHI 386 (533)
T ss_pred HHHHHHHHHHcCCCeEEeeecccccccccccCCCCCC---ccCCCCccCCCceEEEECCCCCCCCCCCCCeeEEEeecCc
Confidence 9999999888778899999999999764443322111 2233 78899999999999999999987557776643
Q ss_pred --ccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCc
Q 004860 561 --LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638 (727)
Q Consensus 561 --~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V 638 (727)
||++ ++..++..|.. ..|.+||+|||+|++++||+++++||.||+||++|++|+|.|||++|. ++|+|
T Consensus 387 ~~gy~~------~~~~t~~~f~~---~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~~~v 456 (533)
T PRK07798 387 PLGYYK------DPEKTAETFPT---IDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALK-AHPDV 456 (533)
T ss_pred cccccC------ChhhhHHhhcc---CCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHH-hCccc
Confidence 3433 33455555543 346679999999999999999999999999999999999999999995 89999
Q ss_pred eeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHh
Q 004860 639 LETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 718 (727)
Q Consensus 639 ~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 718 (727)
.+++|++.++...+ +.++++++++++...+.+++.+ .+++.|++|++|..++++++||+|++||++|+.|+++++
T Consensus 457 ~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~----~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~ 531 (533)
T PRK07798 457 ADALVVGVPDERWG-QEVVAVVQLREGARPDLAELRA----HCRSSLAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAA 531 (533)
T ss_pred eeEEEEeccCcccC-ceEEEEEEECCCCCCCHHHHHH----HHhhhcccCCCCeEEEEcccCCCCCcchhhHHHHhhhhc
Confidence 99999999887777 8899999988766556555555 467788999999999999999999999999999999886
Q ss_pred h
Q 004860 719 H 719 (727)
Q Consensus 719 ~ 719 (727)
+
T Consensus 532 ~ 532 (533)
T PRK07798 532 E 532 (533)
T ss_pred c
Confidence 5
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=555.64 Aligned_cols=474 Identities=20% Similarity=0.206 Sum_probs=372.0
Q ss_pred CCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-c-CCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-F-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v-~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
.+|+++|+++.+. .+||+||.++++++|..|.+. + ++||+|+++++|++++++++|||+++|++++|++|
T Consensus 13 ~~p~~~Al~~~~~--------~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p 84 (540)
T PRK13388 13 AGDDTIAVRYGDR--------TWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNT 84 (540)
T ss_pred ccCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecc
Confidence 3699999998766 999999999999999999999 9 89999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (727)
.++.+++..++++++++++|+++..... ...+. .....++++. ...|.+++.....
T Consensus 85 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~------~~~~~-~~~~~~i~~~-------------~~~~~~~~~~~~~---- 140 (540)
T PRK13388 85 TRRGAALAADIRRADCQLLVTDAEHRPL------LDGLD-LPGVRVLDVD-------------TPAYAELVAAAGA---- 140 (540)
T ss_pred cCChHHHHHHHHhcCCCEEEEChhhhHH------HHhhc-ccCceEEEcc-------------chhhhhhhccccC----
Confidence 9999999999999999999998753211 11110 0011222221 0123333321111
Q ss_pred CCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHh-HHhhhcCcE
Q 004860 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL-FSSFLNGAT 424 (727)
Q Consensus 346 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~-~~~l~~G~~ 424 (727)
..+.....++++++++|||||||+||||+++|+++..........+++.++|++++.+|+.|..++... +.+|..|++
T Consensus 141 -~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~ 219 (540)
T PRK13388 141 -LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAA 219 (540)
T ss_pred -cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcE
Confidence 011123467999999999999999999999999998888877788899999999999999999888554 457999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
+++.+ ..++..+++.|+++++|++..+|+.+..++..........++++.+ + |+.+++.....+.+.+ +++++|.|
T Consensus 220 ~v~~~-~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~-~~~l~~~Y 295 (540)
T PRK13388 220 VALPA-KFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRF-GCQVEDGY 295 (540)
T ss_pred EEECC-CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHh-CCceeccc
Confidence 98865 4677899999999999999999999999886543222223466643 3 5556677777776665 57899999
Q ss_pred cccccccccccCCCCCCccccccccCCCCceEE-----------EECCCCCcCC-CCCCeeeeEEEe------cccCCCC
Q 004860 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPYP-DDQPCVGEVGLF------PLYLGAS 566 (727)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~-----------vld~~~~~~p-~G~~giGel~v~------~~y~~~~ 566 (727)
|+||++.+++... ....+++|+|++|++++ ++|++|++++ .|. +|||++. .||++
T Consensus 296 G~tE~~~~~~~~~---~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~--~GEl~v~~g~~~~~gY~~-- 368 (540)
T PRK13388 296 GSSEGAVIVVREP---GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEA--IGELVNTAGAGFFEGYYN-- 368 (540)
T ss_pred ccccccceeecCC---CCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCc--ceEEEEecCCcccccccC--
Confidence 9999987554321 12356899999997653 4566666663 344 5999984 24443
Q ss_pred ccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEee
Q 004860 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646 (727)
Q Consensus 567 ~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~ 646 (727)
+++.+++.|. .| ||+|||+|++++||+++++||+||+||++|++|+|.|||++|. .||+|.+|+|++.
T Consensus 369 ----~~~~t~~~~~-----~g--~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~g~ 436 (540)
T PRK13388 369 ----NPEATAERMR-----HG--MYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILL-RHPAINRVAVYAV 436 (540)
T ss_pred ----ChHHHHHHhh-----cC--ceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHH-hCCCceEEEEEEc
Confidence 3334555552 12 9999999999999999999999999999999999999999995 8999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 647 ~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
+++..| +.+++++++.++...+.++++++++. +..|++|++|..++++++||+|++||++|++|+++..+.
T Consensus 437 ~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~l~~--~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~~~ 507 (540)
T PRK13388 437 PDERVG-DQVMAALVLRDGATFDPDAFAAFLAA--QPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWAT 507 (540)
T ss_pred cCCCCC-ceeEEEEEECCCCcCCHHHHHHHHHh--hccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhccCC
Confidence 988777 78889998887766676777666532 246999999999999999999999999999999976544
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-63 Score=554.71 Aligned_cols=479 Identities=18% Similarity=0.201 Sum_probs=395.6
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
..+|+++|+.+.+. ++||+||.++++++|..|.+. +++|++|+++++++.++++++|||+++|++++|+++
T Consensus 13 ~~~p~~~~~~~~~~--------~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~ 84 (503)
T PRK04813 13 QTQPDFPAYDYLGE--------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDV 84 (503)
T ss_pred HhCCCceEEEeCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCC
Confidence 67899999998776 999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (727)
.++.+++.++++.++++++++++...... ... ....++++...... ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~----------------~~~~~~~~~~~~~~--~~ 132 (503)
T PRK04813 85 SSPAERIEMIIEVAKPSLIIATEELPLEI--------------LGI----------------PVITLDELKDIFAT--GN 132 (503)
T ss_pred CChHHHHHHHHHhcCCCEEEecccccccc--------------cCC----------------cEEehHHhhhhhhc--cc
Confidence 99999999999999999999987531000 000 00111111111000 00
Q ss_pred CCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEE
Q 004860 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATL 425 (727)
Q Consensus 346 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~l 425 (727)
.........++++++++|||||||.||||.++|+++.....+....+++..+++++...|++|+.+.+.++.+|..|+++
T Consensus 133 ~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~ 212 (503)
T PRK04813 133 PYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTL 212 (503)
T ss_pred cccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEE
Confidence 01112234668899999999999999999999999998888877788899999999999999999988888999999999
Q ss_pred EEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccc
Q 004860 426 ALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (727)
Q Consensus 426 v~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (727)
++.+.. .++..+++.++++++|++..+|++++.+.........+++++|.++++|+++++.+.+++.+.++++.+++.
T Consensus 213 v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~ 292 (503)
T PRK04813 213 VALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNT 292 (503)
T ss_pred EEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeC
Confidence 998753 367889999999999999999999988766544455668899999999999999999999998888899999
Q ss_pred ccccccccccccCCC----CCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCcccccccc
Q 004860 504 CGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADH 574 (727)
Q Consensus 504 YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~ 574 (727)
||+||++..++.... .......++|+|.++++++|+|+++.+++.|+. ||+++ ..||++.+ +.
T Consensus 293 yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~~~------~~ 364 (503)
T PRK04813 293 YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQ--GEIVISGPSVSKGYLNNP------EK 364 (503)
T ss_pred cccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCc--eEEEEeccccccccCCCh------hH
Confidence 999999764433211 112334579999999999999999999999985 99998 35666533 34
Q ss_pred ccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCce
Q 004860 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (727)
Q Consensus 575 ~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~ 654 (727)
+...|..+ .|.+||+|||+|++ +||++++.||.||+||++|.+|+|.+||+.+. .+|+|.+++|++.++...+ +
T Consensus 365 ~~~~~~~~---~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~ 438 (503)
T PRK04813 365 TAEAFFTF---DGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLR-QSSYVESAVVVPYNKDHKV-Q 438 (503)
T ss_pred hHHhhccC---CCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHH-hCCCcceEEEEEeeCCCCc-c
Confidence 44444321 45569999999999 99999999999999999999999999999995 8999999999997776655 8
Q ss_pred EEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhh
Q 004860 655 VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 719 (727)
.+++++++.++......++.+.++++++++|++|++|..++++++||+|+|||++|++|++.+++
T Consensus 439 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 503 (503)
T PRK04813 439 YLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVNK 503 (503)
T ss_pred EEEEEEEeccccccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhcC
Confidence 89999998765322335667778888999999999999999999999999999999999988753
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=612.43 Aligned_cols=497 Identities=19% Similarity=0.208 Sum_probs=393.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
++++||++|+++... +++||+||+++++++|+.|.+.+++||+|+++++|++++++++|||+++|++++|++|
T Consensus 625 a~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~ 697 (1146)
T PRK08633 625 AKRNWSRLAVADSTG-------GELSYGKALTGALALARLLKRELKDEENVGILLPPSVAGALANLALLLAGKVPVNLNY 697 (1146)
T ss_pred HHhcCCCcEEEcCCC-------CcCcHHHHHHHHHHHHHHHHHhCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeCC
Confidence 478999999986432 2899999999999999999755999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC--CcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
.++.+++.+++++++++++++++........... ....+ ..++........ . .....+.+....... +
T Consensus 698 ~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~-~ 767 (1146)
T PRK08633 698 TASEAALKSAIEQAQIKTVITSRKFLEKLKNKGF----DLELPENVKVIYLEDLKAK----I-SKVDKLTALLAARLL-P 767 (1146)
T ss_pred CcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCC----chhcccCceEEEeehhccc----c-chhHHHHHHHHhccC-C
Confidence 9999999999999999999998754321110000 00011 112222110000 0 001112222111100 0
Q ss_pred CC--CCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHH-hHHhhh
Q 004860 344 RP--NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFL 420 (727)
Q Consensus 344 ~~--~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~ 420 (727)
.. .........++++++++|||||||.||||+++|+++.+.+......++++++|++++.+|+.|..++.. ++.+++
T Consensus 768 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~ 847 (1146)
T PRK08633 768 ARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLL 847 (1146)
T ss_pred HHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHH
Confidence 00 000012346799999999999999999999999999998888778888999999999999999998854 789999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
.|+++++.+...++..+++.++++++|++.++|++++.+.+.....+.+++++|.+++|||++++++.+++.+.+ ++++
T Consensus 848 ~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~ 926 (1146)
T PRK08633 848 EGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRI 926 (1146)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCe
Confidence 999999987667888999999999999999999999999886555666789999999999999999998888776 6899
Q ss_pred cccccccccccccccCCCCC---------CccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCC
Q 004860 501 IESCGGTELSSAYIQGSLLQ---------PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGA 565 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~---------~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~ 565 (727)
+|.||+||++..++...+.. ....+++|+|+||++++|+| ++++++|.|+. |||++ ..||+++
T Consensus 927 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~--Gel~v~g~~~~~gY~~~ 1004 (1146)
T PRK08633 927 LEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGED--GLILIGGPQVMKGYLGD 1004 (1146)
T ss_pred ecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCc--eEEEEcCCCccccccCC
Confidence 99999999986554332211 12457899999999999999 56899999996 99998 3566654
Q ss_pred CccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCC--CceeeEE
Q 004860 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE--SILETAA 643 (727)
Q Consensus 566 ~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p--~V~~a~v 643 (727)
++.+++.|.+. +|.+||+|||+|++|+||+++++||.||+||++|++|+|.|||++|. +|| .+.+++|
T Consensus 1005 ------~~~t~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~~~~~~~~v 1074 (1146)
T PRK08633 1005 ------PEKTAEVIKDI---DGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELA-KALGGEEVVFAV 1074 (1146)
T ss_pred ------ccchHHHhhcC---CCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHH-hccCCCCceEEE
Confidence 33555566532 35579999999999999999999999999999999999999999995 898 5677999
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHH-hhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ-SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 644 v~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
++.+++..| ++++++++.. ..+.++++++ ++ +.+|+|++|..+++++++|+|+|||+||++|+++..+.
T Consensus 1075 ~~~~~~~~g-~~~~~~v~~~---~~~~~~l~~~----~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~~ 1144 (1146)
T PRK08633 1075 TAVPDEKKG-EKLVVLHTCG---AEDVEELKRA----IKESGLPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALAL 1144 (1146)
T ss_pred EeccCCCCC-cEEEEEEecC---ccCHHHHHHH----HHhcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence 999998888 8999998862 2344555544 44 47999999999999999999999999999999986654
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=551.50 Aligned_cols=496 Identities=23% Similarity=0.291 Sum_probs=399.6
Q ss_pred ccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 004860 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (727)
Q Consensus 173 ~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~l 251 (727)
.|.+++.+..+. ++.+||++|++..+. .+||.||+++++++|++|.+. +++|++|+++++|+++++++++
T Consensus 3 ~~~~~~~~~~~~-~~~~p~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~ 73 (508)
T TIGR02262 3 YNAAEDLLDRNV-VEGRGGKTAFIDDIS--------SLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL 73 (508)
T ss_pred chHHHHHHHHHH-hcccCCceEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 467777777553 467999999998766 899999999999999999999 9999999999999999999999
Q ss_pred HHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCc--EEEEcCCCCCCCCCCCcCc
Q 004860 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGNDVGIPLREQD 329 (727)
Q Consensus 252 A~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~ 329 (727)
||+++|++++|++|.++.+++.++++.++++++++++... +.........+.. .+.+... ....
T Consensus 74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 139 (508)
T TIGR02262 74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELL------PVIKAALGKSPHLEHRVVVGRP--------EAGE 139 (508)
T ss_pred HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhH------HHHHHHHhcCCCccEEEEeCCC--------Cccc
Confidence 9999999999999999999999999999999999987532 1122222222221 2222110 0112
Q ss_pred ccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHh-hchhcCCCCCCEEEEeccccc
Q 004860 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE-GWAHIDLKVGDVYCWPTNLGW 408 (727)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~~ 408 (727)
..+.+....... ........++++++++|||||||.||||+++|+++...+.. ....++++++|++++..|+.|
T Consensus 140 ~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~ 214 (508)
T TIGR02262 140 VQLAELLATESE-----QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFF 214 (508)
T ss_pred ccHHHHhhcCCC-----ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHH
Confidence 334444332211 11222345789999999999999999999999999876654 345678999999999999999
Q ss_pred ccch-HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhh
Q 004860 409 VMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487 (727)
Q Consensus 409 ~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~ 487 (727)
+.++ ..++.++..|+++++.++..++..+++.|+++++|++.++|+++..++...........++|.+++||+++++++
T Consensus 215 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~ 294 (508)
T TIGR02262 215 AYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEV 294 (508)
T ss_pred HHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHH
Confidence 9888 456788999999999887678889999999999999999999998887654333345678999999999999999
Q ss_pred HHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-----ccc
Q 004860 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLY 562 (727)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y 562 (727)
.+.+.+.+ ++++++.||+||++.+...+.. .....+++|+|++|+.++|+|++++++|.|+. |||++. .+|
T Consensus 295 ~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~--Gel~i~~~~~~~gY 370 (508)
T TIGR02262 295 GQRWQARF-GVDIVDGIGSTEMLHIFLSNLP-GDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEP--GELLISGPSSATMY 370 (508)
T ss_pred HHHHHHHh-CCchhhCccccccCceeecCCc-cCCCCCCcCCCCCCcEEEEECCCCCCCCCCCe--eEEEEecCcccccc
Confidence 88888776 5789999999999865443322 22345689999999999999999999999985 999983 444
Q ss_pred CCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeE
Q 004860 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 642 (727)
Q Consensus 563 ~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~ 642 (727)
++ +++.++..|. .+||+|||++++++||.++++||.||+||++|.+|+|.+||++|. .+|+|.+++
T Consensus 371 ~~------~~~~~~~~~~-------~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~-~~~~v~~~~ 436 (508)
T TIGR02262 371 WN------NRAKTRDTFQ-------GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALI-QHPAVLEAA 436 (508)
T ss_pred CC------CHHHhHhhhh-------cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHH-hCCCeeEEE
Confidence 44 3334444442 139999999999999999999999999999999999999999996 899999999
Q ss_pred EEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHH
Q 004860 643 AISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 716 (727)
Q Consensus 643 vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 716 (727)
+++.++...+ +++++|+++.++...+ +.+.+.+++.++++|++|++|..++.++++|+|++||++|+.|+++
T Consensus 437 ~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 437 VVGVEDEDGL-IKPKAFIVLRPGQDID-TALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLREG 508 (508)
T ss_pred EEeccccCCC-ceeEEEEEeCCCCccc-cccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccCC
Confidence 9998877666 8899999987654332 3445667778899999999999999999999999999999998753
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-62 Score=550.45 Aligned_cols=472 Identities=21% Similarity=0.227 Sum_probs=377.1
Q ss_pred CCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCC
Q 004860 189 EDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (727)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~ 266 (727)
.+|++|+++.+. ++||+||.++++++|++|.++ ++++++|+++++|++++++++|||+++|++++|++|.
T Consensus 16 ~~~~~a~~~~~~--------~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~ 87 (529)
T PRK07867 16 EDDDRGLYFEDS--------FTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPT 87 (529)
T ss_pred ccCCceEEECCc--------EEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCC
Confidence 378999998776 999999999999999999996 8899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCC
Q 004860 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346 (727)
Q Consensus 267 ~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (727)
++.+++.+++++++++++++++.... ....+ .....++... ...|.+.+..... .
T Consensus 88 ~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~----~~~~~~~~~~-----------~~~~~~~l~~~~~----~ 142 (529)
T PRK07867 88 RRGAALARDIAHADCQLVLTESAHAE------LLDGL----DPGVRVINVD-----------SPAWADELAAHRD----A 142 (529)
T ss_pred CChHHHHHHHHhCCCeEEEECHhHHH------HHHhh----ccCceEEEec-----------cccHHHHhcccCC----C
Confidence 99999999999999999999875431 11111 1111122110 1124444432211 0
Q ss_pred CCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHH-hHHhhhcCcEE
Q 004860 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATL 425 (727)
Q Consensus 347 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~~G~~l 425 (727)
........++++++++|||||||.||||+++|+++..........++++++|++++.+|++|..+++. ++.++..|+++
T Consensus 143 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~ 222 (529)
T PRK07867 143 EPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASI 222 (529)
T ss_pred CCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceE
Confidence 11122346789999999999999999999999999888887778889999999999999999988844 66789999999
Q ss_pred EEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccccc
Q 004860 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (727)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (727)
++.+ ..++..+++.++++++|++.++|+.+..++..........+++|. ++||+.+++.. .++.+.+ ++++++.||
T Consensus 223 ~~~~-~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG 298 (529)
T PRK07867 223 ALRR-KFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFG 298 (529)
T ss_pred EecC-CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeec
Confidence 8875 467889999999999999999999999988754332233457884 56888887664 4455555 688999999
Q ss_pred ccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCC----------CeeeeEEE------ecccCCCCcc
Q 004860 506 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQ----------PCVGEVGL------FPLYLGASDR 568 (727)
Q Consensus 506 ~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~----------~giGel~v------~~~y~~~~~~ 568 (727)
+||+++...... ....+++|.|+++ ++|+| +++++++.|+ ..+||+++ ..||++.
T Consensus 299 ~TE~~~~~~~~~---~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~--- 370 (529)
T PRK07867 299 STEGGVAITRTP---DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYND--- 370 (529)
T ss_pred ccccccccccCC---CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCC---
Confidence 999986543221 1234678999998 77887 5788898887 01399987 2455543
Q ss_pred ccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecC
Q 004860 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (727)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~ 648 (727)
++.+...|. .| ||+|||+|+++++|+++|+||.||+||++|++|+|.|||++|. .||+|.+++|++.++
T Consensus 371 ---~~~~~~~~~-----~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~~~V~g~~~ 439 (529)
T PRK07867 371 ---PEADAERMR-----GG--VYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILL-RYPDATEVAVYAVPD 439 (529)
T ss_pred ---hHhhhhhhc-----CC--eEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccC
Confidence 334444442 12 9999999999999999999999999999999999999999996 899999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhh
Q 004860 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 649 ~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 719 (727)
+..+ +++++++++.++...+.+++++++++ +..|++|++|..|+++++||+|++||++|+.|+++...
T Consensus 440 ~~~g-~~~~a~vv~~~~~~~~~~~l~~~~~~--~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~ 507 (529)
T PRK07867 440 PVVG-DQVMAALVLAPGAKFDPDAFAEFLAA--QPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVD 507 (529)
T ss_pred CCCC-eeEEEEEEECCCCCCCHHHHHHHHHh--hccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCC
Confidence 8888 89999999988766777777776543 24599999999999999999999999999999998754
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=545.64 Aligned_cols=452 Identities=20% Similarity=0.197 Sum_probs=371.5
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
.++.++++|+++.++ ++||+||.++++++|..|. ++|+|+++++|++++++++|||+++|++++|++|
T Consensus 10 ~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~ 77 (471)
T PRK07787 10 AAAADIADAVRIGGR--------VLSRSDLAGAATAVAERVA----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPP 77 (471)
T ss_pred hcccCCceEEEeCCc--------EEEHHHHHHHHHHHHHHhc----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCC
Confidence 357789999999877 9999999999999999986 5799999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (727)
.++.+++.++++++++++++++.... . ...+...+.. ...+|.
T Consensus 78 ~~~~~~l~~~l~~~~~~~il~~~~~~--~----------~~~~~~~~~~-------------~~~~~~------------ 120 (471)
T PRK07787 78 DSGVAERRHILADSGAQAWLGPAPDD--P----------AGLPHVPVRL-------------HARSWH------------ 120 (471)
T ss_pred CCChHHHHHHHHhcCCCEEEecCCcc--c----------ccccceeeec-------------cccccc------------
Confidence 99999999999999999999976310 0 0000000000 000000
Q ss_pred CCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcCcE
Q 004860 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (727)
Q Consensus 346 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~ 424 (727)
......++++++++|||||||.||||+++|+++...+......+++.++|++++.+|+.|..++ ..++.++..|++
T Consensus 121 ---~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 197 (471)
T PRK07787 121 ---RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNR 197 (471)
T ss_pred ---cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCE
Confidence 0112356899999999999999999999999999988877778889999999999999999887 458899999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
+++.+ ..++..+++.|+ +++|++.++|+++..|.+... ....++++|.+++||+++++...+++.+.+ +.++++.|
T Consensus 198 ~~~~~-~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~Y 273 (471)
T PRK07787 198 FVHTG-RPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-AARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERY 273 (471)
T ss_pred EEecC-CCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-ccccccceeEEEECCCCCCHHHHHHHHHHc-CCCeeccc
Confidence 98875 467889999999 999999999999999987532 234578999999999999999988887765 57899999
Q ss_pred cccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCC-CCCCeeeeEEEe-----cccCCCCcccccccccccc
Q 004860 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP-DDQPCVGEVGLF-----PLYLGASDRLLNADHEEVY 578 (727)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p-~G~~giGel~v~-----~~y~~~~~~~~~~~~~~~~ 578 (727)
|+||++...+.. .......+++|+|++++.++|+|+++++++ .|+. +|||++. .||++. ++.++..
T Consensus 274 G~tE~~~~~~~~-~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~-~Gei~v~g~~~~~gy~~~------~~~t~~~ 345 (471)
T PRK07787 274 GMTETLITLSTR-ADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGET-VGELQVRGPTLFDGYLNR------PDATAAA 345 (471)
T ss_pred CccccCcceecC-CCCcccCCcccccCCCcEEEEECCCCCCCCCCCCC-ceEEEEECcccchhhcCC------hhhchhc
Confidence 999998643322 222334568999999999999999999997 3431 5999983 455543 3355556
Q ss_pred ccccccCCCceeeeeCceEEEecCceEEEEeec-CCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 579 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~-dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
|..+ .||+|||+|++++||+++++||. |++||++|++|+|.|||++|. .+|.|.+++|++.++...+ +.++
T Consensus 346 ~~~~------~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~ 417 (471)
T PRK07787 346 FTAD------GWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALL-GHPGVREAAVVGVPDDDLG-QRIV 417 (471)
T ss_pred ccCC------CceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHH-hCCCcceEEEEcccccccC-eEEE
Confidence 6432 29999999999999999999996 899999999999999999995 8999999999999887777 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHH
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 715 (727)
+||+... ..+.++ +.+.+++.|++|++|..++++++||+|+|||++|+.|++
T Consensus 418 a~v~~~~--~~~~~~----l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 418 AYVVGAD--DVAADE----LIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred EEEEeCC--CCCHHH----HHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhcc
Confidence 9999843 234444 445577889999999999999999999999999999975
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-62 Score=549.69 Aligned_cols=485 Identities=17% Similarity=0.181 Sum_probs=389.8
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
+++|+++|+++.+. .+||+||.++++++|+.|.+. +++|++|++++++++++++++|||+++|++++|++|
T Consensus 23 ~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 94 (524)
T PRK06188 23 KRYPDRPALVLGDT--------RLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHP 94 (524)
T ss_pred HHCCCCeEEEECCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEeccc
Confidence 68999999998776 999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (727)
..+.+++..++++++++.+++++... ...........+....++...... ...+..+.......
T Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---- 158 (524)
T PRK06188 95 LGSLDDHAYVLEDAGISTLIVDPAPF-----VERALALLARVPSLKHVLTLGPVP-------DGVDLLAAAAKFGP---- 158 (524)
T ss_pred CCCHHHHHHHHHhcCceEEEEecchh-----hHHHHHHhhhcCCceEEEEeCCcc-------chhhHHHhhhccCc----
Confidence 99999999999999999999987421 011111111111111111111000 00011111111000
Q ss_pred CCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEE
Q 004860 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATL 425 (727)
Q Consensus 346 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~l 425 (727)
.... ....++++++++|||||||.||+|+++|+++.+.+......+++..+|++++..|++|..++. ++.+++.|+++
T Consensus 159 ~~~~-~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~ 236 (524)
T PRK06188 159 APLV-AAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRGGTV 236 (524)
T ss_pred cccc-ccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcCCEE
Confidence 0111 122346699999999999999999999999999888888889999999999999999987764 67889999999
Q ss_pred EEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccccc
Q 004860 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (727)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (727)
++.+ ..++..+++.|+++++|++.++|+++..|++.......+++++|.+++||++++++....+.+.+ ++.+++.||
T Consensus 237 ~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG 314 (524)
T PRK06188 237 IVLA-KFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYG 314 (524)
T ss_pred EEcC-CCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeC
Confidence 9987 46788999999999999999999999999987666667789999999999999999877776665 467999999
Q ss_pred ccccccccccCCCC-----CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-----cccCCCCccccccccc
Q 004860 506 GTELSSAYIQGSLL-----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHE 575 (727)
Q Consensus 506 ~TE~~~~~~~~~~~-----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~~ 575 (727)
+||++.+++..... ......++|+|++++.++|+|+++++++.|+. ||+++. .||++.+ ..+
T Consensus 315 ~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~--Gel~v~~~~~~~gy~~~~------~~~ 386 (524)
T PRK06188 315 QTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEV--GEICVRGPLVMDGYWNRP------EET 386 (524)
T ss_pred ccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCe--eEEEEECcchhhhhcCCh------HHh
Confidence 99997554433221 22345689999999999999999999999986 999993 4555432 233
Q ss_pred cccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceE
Q 004860 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (727)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~ 655 (727)
...|. . .||+|||+|++++||+++++||.|++||++|.+|+|.+||++|. .||+|.+++|++.+++..+ +.
T Consensus 387 ~~~~~-----~--g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~ 457 (524)
T PRK06188 387 AEAFR-----D--GWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLA-EHPAVAQVAVIGVPDEKWG-EA 457 (524)
T ss_pred hhhhc-----C--CceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCcC-ce
Confidence 33332 1 29999999999999999999999999999999999999999995 9999999999999888777 89
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
++++++++++...+.++ +++.+++.+++|++|..|+++++||+|++||++|++|++++.+.
T Consensus 458 ~~~~v~~~~~~~~~~~~----l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~~~ 518 (524)
T PRK06188 458 VTAVVVLRPGAAVDAAE----LQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYWEG 518 (524)
T ss_pred EEEEEEECCCCCCCHHH----HHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHHhh
Confidence 99999988755445444 44557788999999999999999999999999999999998443
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-62 Score=555.75 Aligned_cols=491 Identities=20% Similarity=0.242 Sum_probs=383.7
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
++++|+++|+++.++ ++||+||.++++++|+.|. +. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 35 ~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 106 (560)
T PRK08751 35 VAKFADRPAYHSFGK--------TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNV 106 (560)
T ss_pred HHhCCCCceEEECCc--------eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEecc
Confidence 368899999998766 9999999999999999997 57 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCC-------------------CCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND-------------------VGIP 324 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------------~~~~ 324 (727)
+|.++.+++.+++++++++++++++... ..........+...++....... ....
T Consensus 107 ~p~~~~~~~~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (560)
T PRK08751 107 NPLYTPRELKHQLIDSGASVLVVIDNFG------TTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEY 180 (560)
T ss_pred CccCCHHHHHHHHHhcCCeEEEEcchhH------HHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhcccccc
Confidence 9999999999999999999999987532 11111111122111111100000 0000
Q ss_pred CCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcC----CCCC-CE
Q 004860 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID----LKVG-DV 399 (727)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~----~~~~-d~ 399 (727)
..+....|.+....... .........++++++++|||||||.||||+++|+++...+.+....++ +.++ ++
T Consensus 181 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (560)
T PRK08751 181 RINGAIRFREALALGRK----HSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEV 256 (560)
T ss_pred CCCccccHHHHHhccCC----CCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCce
Confidence 00122334444332211 111223346789999999999999999999999999887766544443 3444 46
Q ss_pred EEEecccccccchH-HhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEe
Q 004860 400 YCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (727)
Q Consensus 400 ~l~~~~~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~ 478 (727)
+++..++.|.+++. ..+.++..|+++++.....++..+++.|+++++|++..+|+++..+.+.......++++||.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~ 336 (560)
T PRK08751 257 VITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLG 336 (560)
T ss_pred EEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeee
Confidence 67778888887763 45677888998888766667889999999999999999999999998876555667889999999
Q ss_pred ecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE
Q 004860 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (727)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v 558 (727)
||+++++.+...+.+.+ ++++++.||+||++..++..........+++|+|++++.++|+|+++++++.|+. |||++
T Consensus 337 gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~--Gel~v 413 (560)
T PRK08751 337 GGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEI--GELCI 413 (560)
T ss_pred CCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCCCCc--eEEEE
Confidence 99999999888887755 6789999999999875544333223445689999999999999999999999985 99998
Q ss_pred -----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhh
Q 004860 559 -----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (727)
Q Consensus 559 -----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~ 633 (727)
..||++ +++.++.+|.. ..||+|||+|+++++|+++++||.||+||++|++|+|.|||++|.
T Consensus 414 ~~~~~~~gy~~------~~~~~~~~~~~------~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~- 480 (560)
T PRK08751 414 KGPQVMKGYWK------RPEETAKVMDA------DGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIA- 480 (560)
T ss_pred ecCccchhhcC------Chhhhhhcccc------CCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHH-
Confidence 345554 33455555542 239999999999999999999999999999999999999999995
Q ss_pred cCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHH
Q 004860 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 713 (727)
Q Consensus 634 ~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L 713 (727)
.||+|.+++|++.++...+ +.++++++.+. ...+.++++ +.++++|++|++|..++++++||+|++||++|++|
T Consensus 481 ~~~~v~~~~v~~~~~~~~g-e~~~~~v~~~~-~~~~~~~l~----~~~~~~l~~~~~P~~v~~v~~lP~t~~gKv~r~~L 554 (560)
T PRK08751 481 MMPGVLEVAAVGVPDEKSG-EIVKVVIVKKD-PALTAEDVK----AHARANLTGYKQPRIIEFRKELPKTNVGKILRREL 554 (560)
T ss_pred hCcCeeeeEEEecCCCCCC-ceEEEEEEcCC-CCCCHHHHH----HHHHHhhhhccCCeEEEEhhhCCCCccccccHHHH
Confidence 8999999999999988777 77888777543 334444444 45777899999999999999999999999999999
Q ss_pred HHH
Q 004860 714 RDQ 716 (727)
Q Consensus 714 ~~~ 716 (727)
++.
T Consensus 555 ~~~ 557 (560)
T PRK08751 555 RDA 557 (560)
T ss_pred HHh
Confidence 876
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=539.41 Aligned_cols=429 Identities=15% Similarity=0.124 Sum_probs=345.6
Q ss_pred eecHHHHHHHHHHHHHHHHhh-c-CCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEe
Q 004860 209 LMTYKELREQVMLVANALDTM-F-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286 (727)
Q Consensus 209 ~lTY~eL~~~a~~lA~~L~~~-v-~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~ 286 (727)
-+.|+||+++++++|++|++. + ++|++|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 478999999999999999999 6 67999999999999999999999999999999999999999999999999999998
Q ss_pred ecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCC
Q 004860 287 QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366 (727)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSG 366 (727)
++..... . . .. ... ......++++++++||||
T Consensus 99 ~~~~~~~-------------~------~-------------~~---------~~~-------~~~~~~~~~~~~i~~TSG 130 (452)
T PRK07445 99 LDQLKLS-------------H------P-------------PP---------LPS-------QGILPNLETGWIMIPTGG 130 (452)
T ss_pred cCccccc-------------c------C-------------CC---------CCc-------cccCCCCCCcEEEEeCCC
Confidence 7642100 0 0 00 000 001124689999999999
Q ss_pred CCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCC
Q 004860 367 TTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV 446 (727)
Q Consensus 367 STG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~v 446 (727)
|||.||||++||+++++.+.+....+++.+ +++++.+|++|.+++..++.+|+.|+++++.+.. ..........++++
T Consensus 131 TTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~-~~~~~~~~~~~~~~ 208 (452)
T PRK07445 131 SSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYK-RLKSGQELPPNPSD 208 (452)
T ss_pred CCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChH-hccchhhhhhhcCc
Confidence 999999999999999888877766677765 4678889999999998888999999999998632 11222344457899
Q ss_pred CEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCC-Ccccc
Q 004860 447 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFG 525 (727)
Q Consensus 447 t~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~ 525 (727)
|++.++|++++.+.+.. ..++++||.+++||++++++..+.+... +++++|.||+||++..++...+.. .....
T Consensus 209 t~~~~vP~~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 283 (452)
T PRK07445 209 FFLSLVPTQLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIATLKPDDFLAGNN 283 (452)
T ss_pred eEEEehHHHHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHhc--CCeEecCcchhhhcccccccCchhhccCCC
Confidence 99999999999998632 3357899999999999999887776542 678999999999986544332221 12346
Q ss_pred ccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCce
Q 004860 526 AFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604 (727)
Q Consensus 526 ~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~ 604 (727)
++|+|+++++++|+ .|+ +|||+|. +..+.+ |++ ++. ...+||+|||+|++|+||+
T Consensus 284 ~~G~~~p~~~v~i~--------~g~--~Gel~v~g~~~~~g---Y~~----------~~~-~~~g~~~TGDl~~~d~dG~ 339 (452)
T PRK07445 284 SSGQVLPHAQITIP--------ANQ--TGNITIQAQSLALG---YYP----------QIL-DSQGIFETDDLGYLDAQGY 339 (452)
T ss_pred cCCccCCCCeEEEc--------CCC--cceEEEeCCccchh---hcC----------Ccc-CCCCEEECCCEEEEcCCCC
Confidence 79999999999998 344 3999983 222111 111 111 1234999999999999999
Q ss_pred EEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhh
Q 004860 605 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684 (727)
Q Consensus 605 l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~ 684 (727)
++|.||.||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.++++++.+++ ..+.+++ +++++++
T Consensus 340 l~~~GR~dd~I~~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~~~~~~g-~~~~a~vv~~~~-~~~~~~l----~~~~~~~ 412 (452)
T PRK07445 340 LHILGRNSQKIITGGENVYPAEVEAAIL-ATGLVQDVCVLGLPDPHWG-EVVTAIYVPKDP-SISLEEL----KTAIKDQ 412 (452)
T ss_pred EEEEeecCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEeccCcCCC-cEEEEEEEeCCC-CCCHHHH----HHHHHHh
Confidence 9999999999999999999999999996 9999999999999998888 899999998765 2344444 4457788
Q ss_pred cCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhcc
Q 004860 685 LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 685 L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
|++|++|..++++++||+|++||++|+.|++++.++++.
T Consensus 413 L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 451 (452)
T PRK07445 413 LSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRLGL 451 (452)
T ss_pred CCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999888764
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-62 Score=554.60 Aligned_cols=491 Identities=23% Similarity=0.252 Sum_probs=383.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.++ .+||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 33 a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~ 104 (557)
T PRK07059 33 FRQYADRPAFICMGK--------AITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVN 104 (557)
T ss_pred HHHcCCCceEEEcCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccC
Confidence 368999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCc-EEEEcCCCCC-----------------CCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGND-----------------VGIPLR 326 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-----------------~~~~~~ 326 (727)
|.++.+++.+++++++++++++++.+. +....+....... +++....... ......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (557)
T PRK07059 105 PLYTPRELEHQLKDSGAEAIVVLENFA------TTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSL 178 (557)
T ss_pred cccCHHHHHHHHHccCceEEEEchhhH------HHHHHhhcccCCceeEEecccccccccccccccccccccccccccCC
Confidence 999999999999999999999987532 1111111111111 1111100000 000001
Q ss_pred cCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchh----cCCC---CCCE
Q 004860 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH----IDLK---VGDV 399 (727)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~----~~~~---~~d~ 399 (727)
++...+.+.+..... .........++++++|+|||||||.||||+++|++++.++...... +... ....
T Consensus 179 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (557)
T PRK07059 179 PGHVRFNDALAEGAR----QTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLN 254 (557)
T ss_pred CCcccHHHHhhccCC----CCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcE
Confidence 223445554433221 1112234567899999999999999999999999987655432211 1111 2346
Q ss_pred EEEecccccccch-HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEe
Q 004860 400 YCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (727)
Q Consensus 400 ~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~ 478 (727)
+++..|+.|.++. ...+.++..|++.++.+...++..+++.|+++++|.+.++|+++..|.........+++++|.++.
T Consensus 255 ~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~ 334 (557)
T PRK07059 255 FVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANG 334 (557)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEe
Confidence 7788888888775 456678889999888775557788999999999999999999999998876555667889999999
Q ss_pred ecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE
Q 004860 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (727)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v 558 (727)
||+++++.+.+++.+.+ ++++++.||+||++.+++..........+++|+|++++.++|+|++++++|.|+. |||++
T Consensus 335 gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~~--Gel~v 411 (557)
T PRK07059 335 GGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEP--GEICI 411 (557)
T ss_pred ccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCCCCc--eEEEE
Confidence 99999998888777665 6899999999999876544433222345689999999999999999999999986 99999
Q ss_pred e-----cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhh
Q 004860 559 F-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (727)
Q Consensus 559 ~-----~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~ 633 (727)
. .||++. ++.+...|.. ..||+|||+|++++||+++++||+||+||++|++|+|.|||++|.
T Consensus 412 ~g~~~~~gY~~~------~~~~~~~~~~------~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~- 478 (557)
T PRK07059 412 RGPQVMAGYWNR------PDETAKVMTA------DGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVA- 478 (557)
T ss_pred eCCccchhhhcC------HHHHhhhccc------CCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHH-
Confidence 3 455543 3344444432 229999999999999999999999999999999999999999995
Q ss_pred cCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHH
Q 004860 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 713 (727)
Q Consensus 634 ~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L 713 (727)
.+|+|.+++|++.++...+ +.++++++..+. ..+.++ +++.+++.|++|++|..+++++++|+|++||++|+.|
T Consensus 479 ~~~~V~~~~v~~~~~~~~g-e~~~~~v~~~~~-~~~~~~----l~~~~~~~l~~~~~P~~i~~v~~~P~t~~GK~~r~~L 552 (557)
T PRK07059 479 SHPGVLEVAAVGVPDEHSG-EAVKLFVVKKDP-ALTEED----VKAFCKERLTNYKRPKFVEFRTELPKTNVGKILRREL 552 (557)
T ss_pred hCCceeEEEEEecccCCCC-eeEEEEEEeCCC-CCCHHH----HHHHHHHhcccccCCcEEEEeccCCCCcccceeHHHH
Confidence 8999999999999888777 889999886542 334344 4455778899999999999999999999999999999
Q ss_pred HHH
Q 004860 714 RDQ 716 (727)
Q Consensus 714 ~~~ 716 (727)
+++
T Consensus 553 ~~~ 555 (557)
T PRK07059 553 RDG 555 (557)
T ss_pred Hhh
Confidence 864
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-62 Score=551.56 Aligned_cols=498 Identities=20% Similarity=0.213 Sum_probs=387.0
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++.+|+++|++..+. ++||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 20 a~~~p~~~a~~~~~~--------~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l~ 91 (540)
T PRK06164 20 ARARPDAVALIDEDR--------PLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVN 91 (540)
T ss_pred HHhCCCCeEEecCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEecC
Confidence 478999999996555 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhh----CC--CcEEEEcCCCCCCCCCCCcCcccHHHHhcc
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA----AP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~----~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (727)
+..+.+++.++++++++++++++++... .+....+... .+ ..++++....... . ......+.+....
T Consensus 92 ~~~~~~~l~~~i~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~ 164 (540)
T PRK06164 92 TRYRSHEVAHILGRGRARWLVVWPGFKG----IDFAAILAAVPPDALPPLRAIAVVDDAADAT--P-APAPGARVQLFAL 164 (540)
T ss_pred CCCCcHHHHHHHHhcCccEEEEcccccc----ccHHHHhhcccccccCCcceEEEeccCcccC--C-CCCcccccccccc
Confidence 9999999999999999999999875421 1111111111 01 1222222111000 0 0000111111111
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHh
Q 004860 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (727)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (727)
.... ...........++++++++|||||||+||||+++|+++.+.+......+++.+++++++.+|++|.+++..++.+
T Consensus 165 ~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~ 243 (540)
T PRK06164 165 PDPA-PPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGA 243 (540)
T ss_pred cccC-CcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHH
Confidence 1000 000001122346889999999999999999999999999988888888899999999999999999999889999
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecC-CCChhhHHHHHhhCCC
Q 004860 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE-TSNVDDDLWLSSKAWY 497 (727)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe-~l~~~~~~~~~~~~~~ 497 (727)
+..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.. ....++++++.+.++|. +...+...++... +
T Consensus 244 l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~ 319 (540)
T PRK06164 244 LAGGAPLVCEP-VFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARAR--G 319 (540)
T ss_pred HhcCceEEecC-CCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhhc--C
Confidence 99999998876 567889999999999999999999999998762 34556889998877764 4444555565544 6
Q ss_pred CcccccccccccccccccCCCCC--CccccccccCC-CCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCcc
Q 004860 498 NAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTAT-MTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (727)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~-~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~ 568 (727)
+++++.||+||++..++...... .......|.|+ +++.++|+| +++++++.|+. |||+| ..||++
T Consensus 320 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~~~gY~~---- 393 (540)
T PRK06164 320 VPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGES--GEIEIRAPSLMRGYLD---- 393 (540)
T ss_pred CceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCe--eEEEEecccccccccC----
Confidence 88999999999987654443321 12234567775 789999999 57899999985 99999 345655
Q ss_pred ccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecC
Q 004860 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (727)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~ 648 (727)
+++.++..|..+ .||+|||+|++++||++++.||.||+||++|++|+|.|||++|. .||+|.+++|++.+.
T Consensus 394 --~~~~t~~~~~~~------~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~-~~~~v~~~~v~~~~~ 464 (540)
T PRK06164 394 --NPDATARALTDD------GYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALE-ALPGVAAAQVVGATR 464 (540)
T ss_pred --CchhhhhcccCC------CceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHH-hCCCceeEEEEecCC
Confidence 334555555432 29999999999999999999999999999999999999999995 999999999999874
Q ss_pred CCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCc---hhhHHHHHHHHhhhhccc
Q 004860 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASN---KLLRRVLRDQIKHELSVR 724 (727)
Q Consensus 649 ~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~G---KvdR~~L~~~~~~~~~~~ 724 (727)
.++ +.++++++++++...+.+++.+ .+++.||+|++|..|++++++|+|++| |++|+.|++++++...++
T Consensus 465 -~~~-~~~~~~vv~~~~~~~~~~~l~~----~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~~~~ 537 (540)
T PRK06164 465 -DGK-TVPVAFVIPTDGASPDEAGLMA----ACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARLAAE 537 (540)
T ss_pred -CCc-eeEEEEEEeCCCCCCCHHHHHH----HHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhhhhh
Confidence 334 7899999988765555555554 577789999999999999999999999 999999999988776654
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-62 Score=548.13 Aligned_cols=466 Identities=18% Similarity=0.188 Sum_probs=371.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++.+||++|+++.+. .+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 45 a~~~p~~~a~~~~~~--------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl~ 116 (516)
T PRK13383 45 AARWPGRTAIIDDDG--------ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPIS 116 (516)
T ss_pred HHHCCCCcEEEeCCC--------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEcC
Confidence 468999999998665 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++++++.+.. .+.. .......+... . . .. ....
T Consensus 117 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~-~~~~~~~~~~~-----------~--~-~~-~~~~---- 167 (516)
T PRK13383 117 TEFRSDALAAALRAHHISTVVADNEFAE---------RIAG-ADDAVAVIDPA-----------T--A-GA-EESG---- 167 (516)
T ss_pred ccCCHHHHHHHHhcCCCCEEEEchhHHH---------HHHh-hhcceEEeccc-----------h--h-hh-hcCC----
Confidence 9999999999999999999999875431 1111 11122222100 0 0 00 0000
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHH--HHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcC
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR--CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~--~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (727)
..+...++.++++|||||||+||||+++|..... ........+++.++|+++...|+.|.+++..++.++..|
T Consensus 168 -----~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G 242 (516)
T PRK13383 168 -----GRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALG 242 (516)
T ss_pred -----CCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcC
Confidence 0011235668999999999999999999974321 122223456788999999999999999998788899999
Q ss_pred cEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCC--CCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
+++++.. ..++..+++.++++++|.+.++|+++..|...... ...+++++|.+++||++++++..+++.+.+ ++.+
T Consensus 243 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v 320 (516)
T PRK13383 243 GTVLTHR-HFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDIL 320 (516)
T ss_pred CEEEECC-CCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc-Cchh
Confidence 9998765 56788999999999999999999999999865321 233578999999999999999998888876 5789
Q ss_pred cccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCcccccccccccccc
Q 004860 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFR 580 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~ 580 (727)
++.||+||++..+...........+++|+|+++++++|+|+++++++.|+. |||++...... ..|.+... ..+
T Consensus 321 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~--~~Y~~~~~--~~~- 393 (516)
T PRK13383 321 YNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVT--GRIFVGGELAG--TRYTDGGG--KAV- 393 (516)
T ss_pred hhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCCc--eEEEEecCccc--ccccCCch--hhe-
Confidence 999999999865443322223345689999999999999999999999986 99998422111 01112111 111
Q ss_pred ccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEE
Q 004860 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660 (727)
Q Consensus 581 ~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~v 660 (727)
.. .||+|||+|+++++|++++.||.||+||++|++|+|.|||.+|. +||.|.+++|++.++...+ +.++++|
T Consensus 394 ----~~--g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~-~~~~v~~~~vv~~~~~~~g-~~~~~~v 465 (516)
T PRK13383 394 ----VD--GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALA-AHPAVADNAVIGVPDERFG-HRLAAFV 465 (516)
T ss_pred ----ec--CceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccccccC-ceEEEEE
Confidence 12 39999999999999999999999999999999999999999995 9999999999999988777 8999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHH
Q 004860 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714 (727)
Q Consensus 661 v~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 714 (727)
+++++...+.+++ ++.++++|++|++|..++++++||+|++||++|+.|+
T Consensus 466 ~~~~~~~~~~~~l----~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 466 VLHPGSGVDAAQL----RDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred EECCCCCCCHHHH----HHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 9887655554444 4457778899999999999999999999999999985
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-62 Score=554.05 Aligned_cols=493 Identities=22% Similarity=0.283 Sum_probs=382.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
+.++|+++|+++.+. .+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 34 a~~~p~~~a~~~~~~--------~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~ 105 (563)
T PRK06710 34 ASRYPEKKALHFLGK--------DITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTN 105 (563)
T ss_pred HHHCCCceEEEecCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccC
Confidence 368999999999776 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCC------------------CCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG------------------IPLR 326 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------~~~~ 326 (727)
|.++.+++.++++.++++++++++....... .+........+++........ ....
T Consensus 106 p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (563)
T PRK06710 106 PLYTERELEYQLHDSGAKVILCLDLVFPRVT------NVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVS 179 (563)
T ss_pred cccCHHHHHHHHhccCCeEEEEeccchhhhh------ccchhhccceeEEeccccccccccccccchhhccccccccccc
Confidence 9999999999999999999999875322111 111111111111110000000 0000
Q ss_pred -cC-cccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch-hcCCCC-CCEEEE
Q 004860 327 -EQ-DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKV-GDVYCW 402 (727)
Q Consensus 327 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~-~~~~~~-~d~~l~ 402 (727)
.. ...|..+..... .........++++++++|||||||.||||+++|++++........ .++... ++++++
T Consensus 180 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~ 254 (563)
T PRK06710 180 ESETIHLWNSVEKEVN-----TGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLG 254 (563)
T ss_pred ccchhhhhhhhhhccc-----cccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEE
Confidence 00 001222111100 001111223578999999999999999999999998755433222 234444 457888
Q ss_pred ecccccccchH-HhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecC
Q 004860 403 PTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481 (727)
Q Consensus 403 ~~~~~~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe 481 (727)
..|+.|.++.. .++.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|+........++++||.+++||+
T Consensus 255 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~ 333 (563)
T PRK06710 255 VLPFFHVYGMTAVMNLSIMQGYKMVLIP-KFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSA 333 (563)
T ss_pred eCchHHHHHHHHHHHHHHHcCCeEEEcC-CCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCC
Confidence 99999988774 4567889999999876 467789999999999999999999999998765555566789999999999
Q ss_pred CCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEEe-
Q 004860 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLF- 559 (727)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~- 559 (727)
+++++...++.+.+ +++++|.||+||++..............+++|+|.+++.++|+| ++++++|.|+. |||++.
T Consensus 334 ~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~--Gel~v~g 410 (563)
T PRK06710 334 PLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEI--GEIVVKG 410 (563)
T ss_pred cCCHHHHHHHHHhh-CCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCCCc--eEEEEec
Confidence 99999988887665 67899999999998754333222233456899999999999998 67899999986 999983
Q ss_pred ----cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcC
Q 004860 560 ----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635 (727)
Q Consensus 560 ----~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~ 635 (727)
.||++ +++.+...|. ..||+|||++++++||+++++||.||+||++|.+|+|.|||++|. +|
T Consensus 411 ~~~~~gY~~------~~~~~~~~~~-------~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~-~~ 476 (563)
T PRK06710 411 PQIMKGYWN------KPEETAAVLQ-------DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLY-EH 476 (563)
T ss_pred CccchhhhC------ChHHHhhhcc-------cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHH-hC
Confidence 34443 3334444442 139999999999999999999999999999999999999999995 99
Q ss_pred CCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHH
Q 004860 636 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715 (727)
Q Consensus 636 p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 715 (727)
|.|.+++|++.++...+ +.++++++..++...+.+++.+ +++++|++|++|..|+++++||+|++||++|+.|++
T Consensus 477 ~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~----~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~ 551 (563)
T PRK06710 477 EKVQEVVTIGVPDPYRG-ETVKAFVVLKEGTECSEEELNQ----FARKYLAAYKVPKVYEFRDELPKTTVGKILRRVLIE 551 (563)
T ss_pred cceeeEEEEccccCCcC-ceeEEEEEECCCCCCCHHHHHH----HHHHhcccccCCcEEEEcccCCCCccchhhHHHHHH
Confidence 99999999999988777 8999999988776555555544 567789999999999999999999999999999999
Q ss_pred HHhhh
Q 004860 716 QIKHE 720 (727)
Q Consensus 716 ~~~~~ 720 (727)
++..+
T Consensus 552 ~~~~~ 556 (563)
T PRK06710 552 EEKRK 556 (563)
T ss_pred HHhhc
Confidence 88655
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-62 Score=560.06 Aligned_cols=500 Identities=15% Similarity=0.134 Sum_probs=371.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh---h-cCCC-----------CEEEEEcCCCHHHHHHH
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT---M-FSKG-----------DAIAIDMPMTVRAVIIY 250 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~---~-v~~g-----------d~Vai~~~~s~~~vva~ 250 (727)
++++||++|+++... ...++.+||+||.++++++|++|.+ + +++| |+|+|+++|+++|++++
T Consensus 71 ~~~~p~~~Al~~~~~---g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~ 147 (746)
T PTZ00342 71 YKLNNNKIAIVEHSC---GEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVAD 147 (746)
T ss_pred HhhcCCceeEeccCC---CCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHH
Confidence 478999999986421 1134689999999999999999996 6 9998 99999999999999999
Q ss_pred HHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCC--------
Q 004860 251 LAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGND-------- 320 (727)
Q Consensus 251 lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-------- 320 (727)
+||+++|++.||+++.++.+++.++|+++++++|+++.... +.+......++. .++++......
T Consensus 148 lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~ 221 (746)
T PTZ00342 148 LACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLV------EGLLERKNELPHLKKLIILDTLIKSKEININKE 221 (746)
T ss_pred HHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHH------HHHHHhhccCCCceEEEEECCCCcccccccccc
Confidence 99999999999999999999999999999999999976432 222222223332 23333321100
Q ss_pred ----------CCCC------------------------C------------------CcCcccHHHHhcccCCCCCCCCC
Q 004860 321 ----------VGIP------------------------L------------------REQDLSWKDFLSSVDYHPRPNYY 348 (727)
Q Consensus 321 ----------~~~~------------------------~------------------~~~~~~~~~~~~~~~~~~~~~~~ 348 (727)
.... . ......|+++..... ...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~ 296 (746)
T PTZ00342 222 EKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKT-----TNY 296 (746)
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcc-----cCC
Confidence 0000 0 000011222211110 011
Q ss_pred CCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhc--CCCCCCEEEEecccccccchHHhHHhhhcCcEEE
Q 004860 349 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI--DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLA 426 (727)
Q Consensus 349 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv 426 (727)
......++++|+|+|||||||.||||++||+|+++.+....... ...+.|++++++|++|.++....+.+++.|++++
T Consensus 297 ~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~ 376 (746)
T PTZ00342 297 KIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTIN 376 (746)
T ss_pred CCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEE
Confidence 12234679999999999999999999999999988776543321 2335689999999999999876778899999999
Q ss_pred EecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhc--------CCCCC-------------------------------
Q 004860 427 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--------NCLEG------------------------------- 467 (727)
Q Consensus 427 ~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~--------~~~~~------------------------------- 467 (727)
+.++ ++..+++.|+++++|++.++|.++..|... +....
T Consensus 377 ~~~~--~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~k 454 (746)
T PTZ00342 377 IWSK--DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSK 454 (746)
T ss_pred EeCC--CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence 9864 678899999999999999999999988652 10000
Q ss_pred ---CCccceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCC-CCceEEEEC-CC
Q 004860 468 ---LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILD-EC 542 (727)
Q Consensus 468 ---~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld-~~ 542 (727)
...++||.+++||+++++++.+++...+ +++++++||+||+++..+.... .....+++|+|+ |+++++|+| ++
T Consensus 455 ir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~~-~~~~~gsvG~p~~pg~e~ki~d~~~ 532 (746)
T PTZ00342 455 IKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQHA-DDNNTESIGGPISPNTKYKVRTWET 532 (746)
T ss_pred HHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeeccC-CCCCcccccCcCCCcEEEEEecccc
Confidence 0025899999999999999999988765 6889999999999765544333 234568999998 999999998 43
Q ss_pred CCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeec
Q 004860 543 GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL 617 (727)
Q Consensus 543 ~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~ 617 (727)
+...+.+.. |||++ ..||++ +++.|++.|..+ | ||+|||+|++|+||+|+|+||+||+||+
T Consensus 533 ~~~~~~~~~--GEl~vrGp~v~~GY~~------~pe~T~~~f~~d----G--W~~TGDig~~d~dG~l~i~gR~kdlIkl 598 (746)
T PTZ00342 533 YKATDTLPK--GELLIKSDSIFSGYFL------EKEQTKNAFTED----G--YFKTGDIVQINKNGSLTFLDRSKGLVKL 598 (746)
T ss_pred cccCCCCCc--eEEEEecCcccccccC------ChhhhhhhcCcC----C--cccCCcEEEECCCCeEEEEccCCCeEEe
Confidence 344443433 89988 345555 455777777532 2 9999999999999999999999999995
Q ss_pred -CceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCC----------------CC-CCh---------
Q 004860 618 -GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG----------------FT-SQP--------- 670 (727)
Q Consensus 618 -~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~----------------~~-~~~--------- 670 (727)
+|++|+|.+||++|. +||.|.+|+|++.. .. ..++|.|++... .. .+.
T Consensus 599 s~Ge~I~p~eIE~~l~-~~p~V~~~~VvG~~---~~-~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~ 673 (746)
T PTZ00342 599 SQGEYIETDMLNNLYS-QISFINFCVVYGDD---SM-DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDETI 673 (746)
T ss_pred CCCEEEchHHHHHHHh-cCCCccEEEEEccC---Cc-cccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhhh
Confidence 799999999999995 99999999999852 12 479999988641 00 011
Q ss_pred --HHHHHHHHHHH-----HhhcCCCcccceEEEcC-CC----CCCCCchhhHHHHHHHHhhhhc
Q 004860 671 --DKLKMIFSKAI-----QSKLNPLFKVSLVKVVP-EF----PRTASNKLLRRVLRDQIKHELS 722 (727)
Q Consensus 671 --~~l~~~l~~~l-----~~~L~~~~~P~~i~~v~-~l----P~t~~GKvdR~~L~~~~~~~~~ 722 (727)
.++++.+.+.+ +..|+.|.++..|.+++ .+ -+||+.|+.|+.+.+.|+..++
T Consensus 674 ~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~i~ 737 (746)
T PTZ00342 674 NNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFFID 737 (746)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHHHH
Confidence 12334444333 23699999999888875 33 2999999999999999985554
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=549.33 Aligned_cols=489 Identities=22% Similarity=0.215 Sum_probs=381.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++.+|+++|+++.+. .+||.||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 31 ~~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 102 (541)
T TIGR03205 31 AADYGPRPALEFRDR--------PITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLS 102 (541)
T ss_pred HHHcCCCceEEECCc--------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecC
Confidence 368999999998766 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhh-CCCcEEEEcCCCCC-C-----CCCCCcCcccHHHHhc
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-APLKAIVLPAIGND-V-----GIPLREQDLSWKDFLS 337 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~-----~~~~~~~~~~~~~~~~ 337 (727)
|.++.+++.+++++++++.+++++... ..+...+.... .....+++...... . .........+|.+++.
T Consensus 103 ~~~~~~~l~~~i~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (541)
T TIGR03205 103 PLDGERALSHKLSDSGARLLITSDLAA----LLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK 178 (541)
T ss_pred CCCCHHHHHHHHhhcCceEEEEeCchh----hhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence 999999999999999999999976310 01111111111 11222232221100 0 0011122345666654
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch-----hcCCCCCCEEEEecccccccch
Q 004860 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-----HIDLKVGDVYCWPTNLGWVMGP 412 (727)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~~~~~~~~~ 412 (727)
.... ........++++++++|||||||.||||+++|+++.+....... .......+++++..|+.|..+.
T Consensus 179 ~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 253 (541)
T TIGR03205 179 GAAA-----PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYAL 253 (541)
T ss_pred cCCC-----CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHH
Confidence 3211 11112345789999999999999999999999998765432211 1122345789999999998876
Q ss_pred -HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHH
Q 004860 413 -VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWL 491 (727)
Q Consensus 413 -~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~ 491 (727)
..++.++..|+++++.. ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||++++++..+++
T Consensus 254 ~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~ 332 (541)
T TIGR03205 254 TVILLRSLRRGDLISLHQ-RFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFF 332 (541)
T ss_pred HHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHH
Confidence 44778899999988775 5678999999999999999999999999987544445567899999999999999988888
Q ss_pred HhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEE--CCCCCcCCCCCCeeeeEEEe-----cccCC
Q 004860 492 SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL--DECGVPYPDDQPCVGEVGLF-----PLYLG 564 (727)
Q Consensus 492 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vl--d~~~~~~p~G~~giGel~v~-----~~y~~ 564 (727)
.+.+ +.++++.||+||++..++..........+++|+|++++.++|+ |+++++++.|+. |||++. .||++
T Consensus 333 ~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~ 409 (541)
T TIGR03205 333 ERKT-GLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEV--GELRIRGPNVTRGYWN 409 (541)
T ss_pred HHHh-CCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCe--eEEEEecCCccccccC
Confidence 7655 5889999999999876554443333445689999999998875 677899999985 999983 34554
Q ss_pred CCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEE
Q 004860 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644 (727)
Q Consensus 565 ~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv 644 (727)
. ++.+++.|.. + ||+|||++++++||+++++||.||+||++|++|+|.|||+++. +||+|.+++|+
T Consensus 410 ~------~~~~~~~~~~-----~--~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~-~~~~v~~~~v~ 475 (541)
T TIGR03205 410 R------PEESAEAFVG-----D--RFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIY-EHPGVQEVIVI 475 (541)
T ss_pred C------hhhhHhhhcc-----C--CcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHH-hCCCeeeEEEE
Confidence 3 3345555531 2 7999999999999999999999999999999999999999996 89999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCC-CChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHH
Q 004860 645 SVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714 (727)
Q Consensus 645 ~~~~~~~~~~~l~a~vv~~~~~~-~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 714 (727)
+++++..+ +.++++++++++.. .+.++ ++++++++|++|++|..|+++++||+|++||++|+.|+
T Consensus 476 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~----l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 476 GIPDQYRG-EAAKAFVKLRPGAKPFSLDE----LRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred ecCCcccC-ceEEEEEEECCCCCcCCHHH----HHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence 99988777 88999999886532 34444 44557788999999999999999999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-61 Score=548.62 Aligned_cols=504 Identities=20% Similarity=0.237 Sum_probs=385.6
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
+..+|+++|+++.+. ++||+||+++++++|..|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 30 ~~~~p~~~a~~~~~~--------~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 101 (567)
T PLN02479 30 AVVHPTRKSVVHGSV--------RYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVN 101 (567)
T ss_pred HhhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEec
Confidence 367999999998665 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhh---------CCCcEEEEcCCCCC---CCCCCCcCcccH
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---------APLKAIVLPAIGND---VGIPLREQDLSW 332 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~---~~~~~~~~~~~~ 332 (727)
|.++.+++.+++++++++++++++.... ....+... ....++++...... .......+...|
T Consensus 102 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
T PLN02479 102 IRLNAPTIAFLLEHSKSEVVMVDQEFFT------LAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEY 175 (567)
T ss_pred cccCHHHHHHHHhhcCceEEEEchhhhh------HHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccH
Confidence 9999999999999999999999875421 11111111 11123333211100 000112234456
Q ss_pred HHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch
Q 004860 333 KDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP 412 (727)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 412 (727)
.+++..... . .. .......+++++++|||||||.||||+++|+++..........+++.+++++++.+|++|..++
T Consensus 176 ~~~~~~~~~--~-~~-~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~ 251 (567)
T PLN02479 176 EKFLETGDP--E-FA-WKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGW 251 (567)
T ss_pred HHHHhcccc--c-cc-cCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhH
Confidence 666554221 0 00 0112234577889999999999999999999987666555566788899999999999998887
Q ss_pred HHhHH-hhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCC-CCccceeEEEeecCCCChhhHHH
Q 004860 413 VILFS-SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG-LDWTKIRSFASTGETSNVDDDLW 490 (727)
Q Consensus 413 ~~~~~-~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~-~~l~~Lr~i~~gGe~l~~~~~~~ 490 (727)
...+. ++..|.++++ . ..++..++++++++++|++..+|++++.|........ .++++++.++++|+++++.+.++
T Consensus 252 ~~~~~~~~~~g~~~~~-~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~ 329 (567)
T PLN02479 252 CFTWTLAALCGTNICL-R-QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFA 329 (567)
T ss_pred HHHHHHHhhcCceEec-c-CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHH
Confidence 44443 4555555544 3 4678899999999999999999999999987543222 25789999999999999998887
Q ss_pred HHhhCCCCcccccccccccccccccCCCC---------C-CccccccccCCCCce-EEEEC-CCCCcCCCCCCeeeeEEE
Q 004860 491 LSSKAWYNAIIESCGGTELSSAYIQGSLL---------Q-PQAFGAFSTATMTAG-LVILD-ECGVPYPDDQPCVGEVGL 558 (727)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---------~-~~~~~~iG~p~~~~~-~~vld-~~~~~~p~G~~giGel~v 558 (727)
+.+. +.++++.||+||+++.++..... . .......|.+.++.. ++|+| ++++++|.+...+|||++
T Consensus 330 ~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v 407 (567)
T PLN02479 330 MSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVM 407 (567)
T ss_pred HHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEE
Confidence 7654 57899999999986433322100 0 001135677888875 88999 568888764211599998
Q ss_pred -----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhh
Q 004860 559 -----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (727)
Q Consensus 559 -----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~ 633 (727)
..||++. ++.+++.|.. .||+|||+|+++++|+++|+||.||+||++|++|+|.|||++|.
T Consensus 408 ~g~~~~~GY~~~------~~~t~~~~~~-------g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~- 473 (567)
T PLN02479 408 RGNMVMKGYLKN------PKANEEAFAN-------GWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVY- 473 (567)
T ss_pred eccchhhhhhcC------cccccchhcC-------CceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHH-
Confidence 3566653 3455555531 29999999999999999999999999999999999999999995
Q ss_pred cCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCC-hHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHH
Q 004860 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ-PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRV 712 (727)
Q Consensus 634 ~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~-~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~ 712 (727)
.||.|.+++|++.++...+ +.+++++++..+...+ .+.+.+.|+++++++||+|++|..+++ ++||+|++||++|+.
T Consensus 474 ~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~r~~ 551 (567)
T PLN02479 474 THPAVLEASVVARPDERWG-ESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQKHV 551 (567)
T ss_pred hCcccceeeEEeccchhcC-ceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCeeHHH
Confidence 8999999999999887776 8999999988754322 234556778889999999999988876 779999999999999
Q ss_pred HHHHHhh-hhcccCCC
Q 004860 713 LRDQIKH-ELSVRSRI 727 (727)
Q Consensus 713 L~~~~~~-~~~~~~~~ 727 (727)
|++.+.. ...++|+|
T Consensus 552 L~~~~~~~~~~~~~~~ 567 (567)
T PLN02479 552 LRAKAKEMGPVKKSRL 567 (567)
T ss_pred HHHHHHhhCCcccccC
Confidence 9998866 67888875
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-62 Score=565.33 Aligned_cols=511 Identities=17% Similarity=0.151 Sum_probs=376.7
Q ss_pred CCCCCCceEEEEe-----------cCC----CCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHH
Q 004860 186 RRKEDNTVAIVWR-----------EDR----CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249 (727)
Q Consensus 186 a~~~pd~~Al~~~-----------~~~----~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva 249 (727)
++++||++|+.+. ++. ...+.+..+||+||+++++++|++|.++ +++||+|+|+++|+++|+++
T Consensus 68 ~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~ 147 (696)
T PLN02387 68 CKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIA 147 (696)
T ss_pred HHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHH
Confidence 4789999999542 110 0124556799999999999999999999 99999999999999999999
Q ss_pred HHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCC----
Q 004860 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGI---- 323 (727)
Q Consensus 250 ~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~---- 323 (727)
+|||+++|+++|||++.++.+++.++|++++++++|++.... +.+..+....+. .++++.........
T Consensus 148 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~ 221 (696)
T PLN02387 148 LQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQL------KKLIDISSQLETVKRVIYMDDEGVDSDSSLSG 221 (696)
T ss_pred HHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHH------HHHHHHhhccCCceEEEEECCCCchhhhhhhc
Confidence 999999999999999999999999999999999999986432 222222222332 23333221110000
Q ss_pred CCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchh-cCCCCCCEEEE
Q 004860 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYCW 402 (727)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~l~ 402 (727)
.......+|.++....... ........++|+++|+|||||||.||||++||++++..+...... .++.++|++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (696)
T PLN02387 222 SSNWTVSSFSEVEKLGKEN----PVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLA 297 (696)
T ss_pred cCCcEEEEHHHHHHhhccC----CCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEE
Confidence 0011123566665543221 111223467999999999999999999999999998877765544 36889999999
Q ss_pred ecccccccchHHhHHhhhcCcEEEEecCCC-------ChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCC---------
Q 004860 403 PTNLGWVMGPVILFSSFLNGATLALYQGSP-------LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--------- 466 (727)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~-------~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--------- 466 (727)
++|++|.++....+..+..|+++.+..... .+..+++.++++++|++.++|++++.+.+.....
T Consensus 298 ~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~ 377 (696)
T PLN02387 298 YLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAK 377 (696)
T ss_pred ECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHH
Confidence 999999998865556677787776633211 1234567899999999999999999886431000
Q ss_pred ----------------------C--C-------------Cc-cceeEEEeecCCCChhhHHHHHhhCCCCcccccccccc
Q 004860 467 ----------------------G--L-------------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508 (727)
Q Consensus 467 ----------------------~--~-------------~l-~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 508 (727)
. . .+ +++|.+++||+++++++.+++...+ ++++++.||+||
T Consensus 378 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~~YG~TE 456 (696)
T PLN02387 378 KLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-GAPIGQGYGLTE 456 (696)
T ss_pred HHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-CCCeeEeechhh
Confidence 0 0 01 5899999999999999987776555 688999999999
Q ss_pred cccccccCCCCCCccccccccCCCCceEEEEC-CCCCcC---CCCCCeeeeEEE-----ecccCCCCccccccccccccc
Q 004860 509 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPY---PDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYF 579 (727)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~---p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f 579 (727)
+++..+.... .....+++|+|+++++++|+| +++... .++. .|||+| ..||++ +++.|++.|
T Consensus 457 t~~~~~~~~~-~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p--~GEi~vrGp~v~~GY~~------~pe~T~~~f 527 (696)
T PLN02387 457 TCAGATFSEW-DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMP--RGEIVIGGPSVTLGYFK------NQEKTDEVY 527 (696)
T ss_pred cccceeecCc-ccCCCCccCCCCCceEEEEeeccccCcccCCCCCC--CceEEeccCcccchhcC------CHHHHhhhh
Confidence 9865544433 233567899999999999998 544322 1222 388887 456665 445677777
Q ss_pred cccccCCCceeeeeCceEEEecCceEEEEeecCCeeec-CceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEE
Q 004860 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (727)
Q Consensus 580 ~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a 658 (727)
..++ +|.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|. +||.|.+++|++.+. . ..++|
T Consensus 528 ~~d~--~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~-~~p~V~~~~V~g~~~---~-~~~~a 600 (696)
T PLN02387 528 KVDE--RGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALS-VSPYVDNIMVHADPF---H-SYCVA 600 (696)
T ss_pred cccc--CCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHh-cCCCeeEEEEEecCC---c-ceEEE
Confidence 5332 35569999999999999999999999999998 699999999999995 999999999998542 2 67899
Q ss_pred EEEecCCC----------C-CC------hHHHHHHHHHHH-----HhhcCCCcccceEEEcCCCC------CCCCchhhH
Q 004860 659 FVVLKKGF----------T-SQ------PDKLKMIFSKAI-----QSKLNPLFKVSLVKVVPEFP------RTASNKLLR 710 (727)
Q Consensus 659 ~vv~~~~~----------~-~~------~~~l~~~l~~~l-----~~~L~~~~~P~~i~~v~~lP------~t~~GKvdR 710 (727)
+|++.+.. . .+ ..++++.+.+.+ +.+|+.|.+|+.|.++++-. +||+.|+.|
T Consensus 601 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R 680 (696)
T PLN02387 601 LVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKR 680 (696)
T ss_pred EEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhh
Confidence 99986421 0 01 123333333333 34799999999999987643 788889999
Q ss_pred HHHHHHHhhhhcc
Q 004860 711 RVLRDQIKHELSV 723 (727)
Q Consensus 711 ~~L~~~~~~~~~~ 723 (727)
+.+.+.|++++++
T Consensus 681 ~~i~~~y~~~i~~ 693 (696)
T PLN02387 681 EQIRKKFKDDLKK 693 (696)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-61 Score=548.66 Aligned_cols=511 Identities=20% Similarity=0.222 Sum_probs=390.0
Q ss_pred cCCCCcccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHH
Q 004860 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245 (727)
Q Consensus 167 w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~ 245 (727)
|++....+..+.+ ..+ ++.+||++|+.+.+. .+||.||+++++++|++|.+. +++|++|+++++|+++
T Consensus 27 ~~~~~~~~l~~~l-~~~--a~~~p~~~al~~~~~--------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~ 95 (567)
T PRK06178 27 EYPHGERPLTEYL-RAW--ARERPQRPAIIFYGH--------VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQ 95 (567)
T ss_pred CCCcCcccHHHHH-HHH--HHHCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcH
Confidence 5544444444333 222 367899999998776 899999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCC-CCCC---
Q 004860 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAI-GNDV--- 321 (727)
Q Consensus 246 ~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~--- 321 (727)
++++++||+++|++++|++|.++.+++.+++++++++++++++... +.+..+........+++... +...
T Consensus 96 ~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~------~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 169 (567)
T PRK06178 96 FHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLA------PVVEQVRAETSLRHVIVTSLADVLPAEP 169 (567)
T ss_pred HHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchH------HHHHHhhccCCcceEEEecccccccccc
Confidence 9999999999999999999999999999999999999999987532 11222222222222222111 1000
Q ss_pred CCCCCc-------CcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch-hcC
Q 004860 322 GIPLRE-------QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HID 393 (727)
Q Consensus 322 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~-~~~ 393 (727)
....+. ....+.++...... ...........++++++|+|||||||.||||++||++++........ ...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~ 247 (567)
T PRK06178 170 TLPLPDSLRAPRLAAAGAIDLLPALRA--CTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVV 247 (567)
T ss_pred ccccccccccccccccccccHHHHhhc--cccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhcc
Confidence 000000 00112222221111 00111122345789999999999999999999999998876554433 356
Q ss_pred CCCCCEEEEecccccccch-HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccc
Q 004860 394 LKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (727)
Q Consensus 394 ~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~ 472 (727)
+.++|++++.+|+.|..+. ..++.++.+|+++++.+ ..++..++..|+++++|.+.++|..+..+.........++++
T Consensus 248 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~-~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~ 326 (567)
T PRK06178 248 GGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLA-RWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSS 326 (567)
T ss_pred CCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeC-CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcch
Confidence 7899999999999998887 46788999999999987 567889999999999999999999999988765445566778
Q ss_pred eeEEEe--ecCCCChhhHHHHHhhCCCCcccccccccccccccccCCC--CC----CccccccccCCCCceEEEEC-CCC
Q 004860 473 IRSFAS--TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL--LQ----PQAFGAFSTATMTAGLVILD-ECG 543 (727)
Q Consensus 473 Lr~i~~--gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~--~~----~~~~~~iG~p~~~~~~~vld-~~~ 543 (727)
++.+.. .|+.++++..+.+...++...+.+.||+||++...+.... .. ....+++|+|++|++++|+| +++
T Consensus 327 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~ 406 (567)
T PRK06178 327 LRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETG 406 (567)
T ss_pred heeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCC
Confidence 887654 4589999988888877654444568999998764333221 11 12345789999999999999 679
Q ss_pred CcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecC
Q 004860 544 VPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618 (727)
Q Consensus 544 ~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~ 618 (727)
+++|.|+. |||++ ..||++. ++.++..|. +| ||+|||+|++++||+++++||+||+||++
T Consensus 407 ~~~~~g~~--Gel~v~g~~v~~gY~~~------~~~~~~~~~-----dg--~~~TGDl~~~~~~g~l~i~GR~~d~i~~~ 471 (567)
T PRK06178 407 ELLPLGAE--GEIVVRTPSLLKGYWNK------PEATAEALR-----DG--WLHTGDIGKIDEQGFLHYLGRRKEMLKVN 471 (567)
T ss_pred CcCCCCCc--eEEEEECCcccccccCC------hhhhhhccc-----CC--ceeecceEEEecCCeEEEEecccccEEEC
Confidence 99999985 99998 3455543 334444443 23 99999999999999999999999999999
Q ss_pred ceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcC
Q 004860 619 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP 698 (727)
Q Consensus 619 G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~ 698 (727)
|++|+|.|||+++. .+|+|.+++|++.++...+ +.++++|+++++...+.+++++ .+++.|++|++|. +++++
T Consensus 472 G~~i~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~----~~~~~l~~~~~p~-i~~v~ 544 (567)
T PRK06178 472 GMSVFPSEVEALLG-QHPAVLGSAVVGRPDPDKG-QVPVAFVQLKPGADLTAAALQA----WCRENMAVYKVPE-IRIVD 544 (567)
T ss_pred CEEECHHHHHHHHH-hCCCeeEEEEEcCcCcccC-cceEEEEEeCCCCcCCHHHHHH----HHHhcCcccCCce-EEEec
Confidence 99999999999995 8999999999999888777 8899999988765555555544 5777899999996 88899
Q ss_pred CCCCCCCchhhHHHHHHHHhh
Q 004860 699 EFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 699 ~lP~t~~GKvdR~~L~~~~~~ 719 (727)
++|+|++||++|+.|++++++
T Consensus 545 ~iP~t~~GKv~r~~l~~~~~~ 565 (567)
T PRK06178 545 ALPMTATGKVRKQDLQALAEE 565 (567)
T ss_pred cCCCCCccceeHHHHHHHHHh
Confidence 999999999999999998865
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-62 Score=566.13 Aligned_cols=505 Identities=17% Similarity=0.185 Sum_probs=368.3
Q ss_pred CCCCCCCceEEEEecC-----------CCC--------CCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 004860 185 HRRKEDNTVAIVWRED-----------RCD--------ESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~-----------~~~--------~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~ 244 (727)
+++++||++|+.+... .+. .+..+.+||+||+++++++|++|.++ +++||+|+|+++|++
T Consensus 78 ~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~ 157 (700)
T PTZ00216 78 ICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRW 157 (700)
T ss_pred HHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCH
Confidence 3479999999998521 000 12457999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhh--CCC-cEEEEcCCCCCC
Q 004860 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA--APL-KAIVLPAIGNDV 321 (727)
Q Consensus 245 ~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--~~~-~~~v~~~~~~~~ 321 (727)
+|++++|||+++|++++|+++.++++++.++++++++++++++.... +.+...... .+. .++++.......
T Consensus 158 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~~~~~ii~~~~~~~~~ 231 (700)
T PTZ00216 158 EWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNV------PNLLRLMKSGGMPNTTIIYLDSLPASV 231 (700)
T ss_pred HHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHH------HHHHHhhhhccCCceEEEEECCCcccc
Confidence 99999999999999999999999999999999999999999986421 111111111 111 233332111100
Q ss_pred CCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhc----C-CCC
Q 004860 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI----D-LKV 396 (727)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~----~-~~~ 396 (727)
........+|++++...... ...........+++++||+|||||||.||||++||+++++.+.+....+ + +.+
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~ 309 (700)
T PTZ00216 232 -DTEGCRLVAWTDVVAKGHSA-GSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEE 309 (700)
T ss_pred -ccCCceEEEHHHHHHhCCcc-ccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCC
Confidence 00112245677776554210 0111112334679999999999999999999999999988776654332 2 478
Q ss_pred CCEEEEecccccccchHHhHHhhhcCcEEEEecCCCChhhHHH-------HHHHhCCCEEEechHHHHHHHhcCCC----
Q 004860 397 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK-------FVQDAGVTVLGTVPSLVKAWRNTNCL---- 465 (727)
Q Consensus 397 ~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~-------~i~~~~vt~l~~~P~~l~~l~~~~~~---- 465 (727)
+|++++++|++|.++.......+..|+++++.+ +..+.+ .|+++++|++.++|++++.+.+....
T Consensus 310 ~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~----~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~ 385 (700)
T PTZ00216 310 DETYCSYLPLAHIMEFGVTNIFLARGALIGFGS----PRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPP 385 (700)
T ss_pred CCEEEEEChHHHHHHHHHHHHHHHcCCEEEECC----HHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhc
Confidence 899999999999888754555577788776632 333433 68899999999999999887642100
Q ss_pred ---------------------CCCC----------------ccceeEEEeecCCCChhhHHHHHhhCCCCcccccccccc
Q 004860 466 ---------------------EGLD----------------WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508 (727)
Q Consensus 466 ---------------------~~~~----------------l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 508 (727)
...+ .++||.+++||+++++++.+++...+ + +++|.||+||
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG~TE 463 (700)
T PTZ00216 386 VGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQGWGLTE 463 (700)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhccCccc
Confidence 0000 15799999999999999988776654 4 8999999999
Q ss_pred cccccccCCCCCCccccccccCCCCceEEEECCCCC--cCCCCCCeeeeEEE-----ecccCCCCccccccccccccccc
Q 004860 509 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGV--PYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRG 581 (727)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~--~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~ 581 (727)
+++..+.... .....+++|+|++|++++|+|+++. ..+++. .|||+| +.||++ +++.|++.|..
T Consensus 464 t~~~~~~~~~-~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~--~GEL~vrG~~v~~GY~~------~pe~T~~~f~~ 534 (700)
T PTZ00216 464 TVCCGGIQRT-GDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEP--RGEILLRGPFLFKGYYK------QEELTREVLDE 534 (700)
T ss_pred ccccccccCC-CCCCCCCcCCcCCCeEEEEeechhhccCCCCCC--CceEEEcCCcccchhcC------ChhHhhhhccc
Confidence 9865443332 2345679999999999999997642 234444 389988 456665 44577777764
Q ss_pred cccCCCceeeeeCceEEEecCceEEEEeecCCeee-cCceeechHHHHHHHhhcCCCceee--EEEeecCCCCCceEEEE
Q 004860 582 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN-LGGIKTSSVEIERVCDQADESILET--AAISVSPAGGGPEVLVI 658 (727)
Q Consensus 582 ~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik-~~G~ri~~~eIE~~l~~~~p~V~~a--~vv~~~~~~~~~~~l~a 658 (727)
+ | ||+|||+|++|+||+|+|+||+||+|| ++|++|+|+|||+++. +||.|.++ +|++.+ .. ..++|
T Consensus 535 d----G--w~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~-~~p~V~~~~~~v~~~~---~~-~~l~a 603 (700)
T PTZ00216 535 D----G--WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYG-QNELVVPNGVCVLVHP---AR-SYICA 603 (700)
T ss_pred c----C--CeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHh-cCcCcccceEEEEEec---CC-ceEEE
Confidence 3 2 999999999999999999999999999 8999999999999995 99999973 344332 12 68999
Q ss_pred EEEecCCC----------CC------ChHHHHHHHHHHH-----HhhcCCCcccceEEEcCC------CCCCCCchhhHH
Q 004860 659 FVVLKKGF----------TS------QPDKLKMIFSKAI-----QSKLNPLFKVSLVKVVPE------FPRTASNKLLRR 711 (727)
Q Consensus 659 ~vv~~~~~----------~~------~~~~l~~~l~~~l-----~~~L~~~~~P~~i~~v~~------lP~t~~GKvdR~ 711 (727)
+|++.... .. +..++++.+.+.+ +..|..|.+|+.|.++++ =-+||++|+.|+
T Consensus 604 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~ 683 (700)
T PTZ00216 604 LVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRR 683 (700)
T ss_pred EEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchH
Confidence 99875310 00 1123333444433 347889999999988753 237999999999
Q ss_pred HHHHHHhhhhcc
Q 004860 712 VLRDQIKHELSV 723 (727)
Q Consensus 712 ~L~~~~~~~~~~ 723 (727)
.+.+.|++.+++
T Consensus 684 ~i~~~y~~~i~~ 695 (700)
T PTZ00216 684 VIDERYADLIKE 695 (700)
T ss_pred HHHHHHHHHHHH
Confidence 999999988875
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-61 Score=538.30 Aligned_cols=493 Identities=19% Similarity=0.176 Sum_probs=386.5
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+.+ ..+||+||.++++++|++|.++ +++|++|++++++++++++++|||+++|++++|++
T Consensus 7 a~~~p~~~a~~~~~~~------~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~ 80 (511)
T PRK13391 7 AQTTPDKPAVIMASTG------EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVN 80 (511)
T ss_pred HhhCCCceEEEecCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccc
Confidence 4789999999874321 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
+.++.+++.++++++++++++++.... .....+....+. ..+++...... .....+.+.......
T Consensus 81 ~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~- 147 (511)
T PRK13391 81 SHLTPAEAAYIVDDSGARALITSAAKL------DVARALLKQCPGVRHRLVLDGDGEL------EGFVGYAEAVAGLPA- 147 (511)
T ss_pred cccCHHHHHHHHhccCCcEEEEchhhH------HHHHHHHhcCCCceEEEEecCCCCC------cccccHHHHhcCCCC-
Confidence 999999999999999999999987432 111112222221 12222111110 112234433322111
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEec--ChHHH---HHHHhhchhcCCCCCCEEEEecccccccchHHhHH
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT--QLSSI---RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~t--h~~l~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (727)
....+.++.++++|||||||.||||+++ |.++. +........+++.+++++++..|++|+.++...+.
T Consensus 148 -------~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~ 220 (511)
T PRK13391 148 -------TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVML 220 (511)
T ss_pred -------CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHH
Confidence 0111334678999999999999999964 66543 23333445677889999999999999988877788
Q ss_pred hhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhC
Q 004860 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (727)
Q Consensus 418 ~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~ 495 (727)
++..|+++++.+ ..++..+++.++++++|++.++|+++..+.+... ....+++++|.+++||++++++...++.+.+
T Consensus 221 ~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~ 299 (511)
T PRK13391 221 VIRLGGTVIVME-HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW 299 (511)
T ss_pred HHHcCceEEECC-CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHc
Confidence 999999999986 4678899999999999999999999998876532 2234678999999999999999988887765
Q ss_pred CCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCccccccccc
Q 004860 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE 575 (727)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~ 575 (727)
+..+++.||+||++.+............+++|+|+++ .++|+|+++++++.|+. |||++...+. ..++.+++.+
T Consensus 300 -g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~--Gel~~~g~~~--~gy~~~~~~~ 373 (511)
T PRK13391 300 -GPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDDGAELPPGEP--GTIWFEGGRP--FEYLNDPAKT 373 (511)
T ss_pred -CCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCCCCCCCCCCc--eEEEEecCcc--eEEcCChhHh
Confidence 5789999999999875443322223445789999999 69999999999999986 9999843321 1122234445
Q ss_pred cccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceE
Q 004860 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (727)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~ 655 (727)
+..|..+ ..||+|||+|++++||++++.||.||++|++|++|++.|||++|. +||.|.+++|++.++...+ +.
T Consensus 374 ~~~~~~~-----~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~-~~~~v~~~~v~~~~~~~~g-~~ 446 (511)
T PRK13391 374 AEARHPD-----GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLI-THPKVADAAVFGVPNEDLG-EE 446 (511)
T ss_pred HHhhccC-----CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHH-hCCCcceEEEEecCCcccC-ce
Confidence 5444322 249999999999999999999999999999999999999999996 8999999999999888877 88
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhh
Q 004860 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 719 (727)
+++++++.++...+ +.+.+.+++++++.||+|++|..|.+++++|+|+|||++|+.|++.+.+
T Consensus 447 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 447 VKAVVQPVDGVDPG-PALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred eEEEEEECCCCCcc-cchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence 99999887654333 3445667778899999999999999999999999999999999998764
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-60 Score=535.21 Aligned_cols=487 Identities=20% Similarity=0.193 Sum_probs=379.5
Q ss_pred eEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHH
Q 004860 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAARE 271 (727)
Q Consensus 193 ~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~ 271 (727)
.|++..++ .+||.||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++|.++.++
T Consensus 3 ~~~~~~~~--------~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 74 (509)
T PRK12406 3 ATIISGDR--------RRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEE 74 (509)
T ss_pred eEEEECCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHH
Confidence 46666555 999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEE--cCCCC-------CC-CCCCCcCcccHHHHhcccCC
Q 004860 272 IATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVL--PAIGN-------DV-GIPLREQDLSWKDFLSSVDY 341 (727)
Q Consensus 272 l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~ 341 (727)
+.++++++++++++++..... .+.+..+..+.++ ..... .. .........+|++.......
T Consensus 75 ~~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (509)
T PRK12406 75 IAYILEDSGARVLIAHADLLH---------GLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEP 145 (509)
T ss_pred HHHHHhccCCcEEEEccchhh---------hhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCc
Confidence 999999999999999875321 1111111111111 10000 00 00111233456655432211
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHH---HHHHhhchhcCCCCCCEEEEecccccccchHHhHHh
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI---RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (727)
.....++++++++|||||||.||||+++|.+.. .........+++.+++++++..|+.|..+....+.+
T Consensus 146 --------~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 217 (509)
T PRK12406 146 --------YDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRA 217 (509)
T ss_pred --------cCCCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHH
Confidence 112346899999999999999999999876543 333334456788999999999999998887666678
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCC
Q 004860 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 496 (727)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~ 496 (727)
+..|+++++.+ ..++..+++.++++++|++.++|+++..|+.... ....+++++|.+++||+++++++..++.+.+
T Consensus 218 ~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~- 295 (509)
T PRK12406 218 GRLGGVLVLQP-RFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW- 295 (509)
T ss_pred HhhheEEEEcc-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHc-
Confidence 88999998876 4678899999999999999999999999987533 2345678999999999999999988888765
Q ss_pred CCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCcccccccccc
Q 004860 497 YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEE 576 (727)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~ 576 (727)
++.+++.||+||++.+.+..........+++|+|++++.++|+|+++++++.|+. ||+++.........++.+++.++
T Consensus 296 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~~~y~~~~~~~~ 373 (509)
T PRK12406 296 GPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEI--GEIYSRIAGNPDFTYHNKPEKRA 373 (509)
T ss_pred CCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCCCc--eEEEEECCccccccccCCchhcc
Confidence 5789999999999875543332223345789999999999999999999999986 99998321111001111222333
Q ss_pred ccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEE
Q 004860 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (727)
Q Consensus 577 ~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l 656 (727)
..+ ...||+|||+|++++||++++.||.||+||++|++|+|.|||+.|. .+|+|.+++|++.++...+ +.+
T Consensus 374 ~~~-------~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~ 444 (509)
T PRK12406 374 EID-------RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLH-AVPGVHDCAVFGIPDAEFG-EAL 444 (509)
T ss_pred ccc-------CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeeeccccC-cee
Confidence 322 1239999999999999999999999999999999999999999996 8999999999999887767 889
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhh
Q 004860 657 VIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721 (727)
Q Consensus 657 ~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 721 (727)
++++++.++...+.++++ +.+++.|++|++|..++++++||+|++||++|+.|++.+....
T Consensus 445 ~~~v~~~~~~~~~~~~l~----~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~~ 505 (509)
T PRK12406 445 MAVVEPQPGATLDEADIR----AQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWANA 505 (509)
T ss_pred EEEEEECCCCCCCHHHHH----HHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhhc
Confidence 999998765544545544 4577889999999999999999999999999999998876543
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=543.53 Aligned_cols=496 Identities=21% Similarity=0.252 Sum_probs=384.2
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
+++|+++|+++.+. .+||+||.++++++|.+|.+ . +++||+|+++++|++++++++|||+++|++++|++
T Consensus 34 ~~~p~~~a~~~~~~--------~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 105 (560)
T PRK08974 34 ARYADQPAFINMGE--------VMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVN 105 (560)
T ss_pred HhCCCCceEEECCc--------cccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccC
Confidence 68999999998665 89999999999999999985 7 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCC-------------------C
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP-------------------L 325 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------~ 325 (727)
|.++.+++.+++++++++++++++... +....+........+++.......... .
T Consensus 106 ~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (560)
T PRK08974 106 PLYTPRELEHQLNDSGAKAIVIVSNFA------HTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYH 179 (560)
T ss_pred ccCCHHHHHHHHHhcCceEEEEecccc------HHHHHHhhhcCcceEEEecccccccccccccccchhhhccccccccc
Confidence 999999999999999999999986432 112222211111222211110000000 0
Q ss_pred CcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhc---CCCCCCEEEE
Q 004860 326 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI---DLKVGDVYCW 402 (727)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d~~l~ 402 (727)
.+...++.+....... .........++++++++|||||||.||||+++|+++...+......+ ....++.++.
T Consensus 180 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 255 (560)
T PRK08974 180 LPDAISFRSALHKGRR----MQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVT 255 (560)
T ss_pred CCCcccHHHHhhccCC----CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEE
Confidence 0011122222221111 01111224578999999999999999999999999987655433222 2334567778
Q ss_pred ecccccccch-HHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecC
Q 004860 403 PTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481 (727)
Q Consensus 403 ~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe 481 (727)
.+|+.|.++. ...+.++.+|+++++.....++..+++.++++++|++.++|++++.|.........+++++|.+++||+
T Consensus 256 ~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~ 335 (560)
T PRK08974 256 ALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGM 335 (560)
T ss_pred eCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCc
Confidence 8888887775 446677889999888765557788999999999999999999999998765555566789999999999
Q ss_pred CCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe--
Q 004860 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-- 559 (727)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-- 559 (727)
++++.+..++.+.+ ++++++.||+||++..++.+........+++|.|++++.++|+|++++++|.|+. |||++.
T Consensus 336 ~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~g~ 412 (560)
T PRK08974 336 AVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEP--GELWVKGP 412 (560)
T ss_pred cCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCCCc--eEEEEecC
Confidence 99999888887654 6889999999999876555443333445789999999999999999999999995 999993
Q ss_pred ---cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCC
Q 004860 560 ---PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE 636 (727)
Q Consensus 560 ---~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p 636 (727)
.+|++ +++.++..|. . .||+|||+++++++|+++++||.||+||++|++|+|.+||++|. .||
T Consensus 413 ~~~~gy~~------~~~~~~~~~~-----~--g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~-~~~ 478 (560)
T PRK08974 413 QVMLGYWQ------RPEATDEVIK-----D--GWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVM-LHP 478 (560)
T ss_pred CcchhhcC------Chhhhhhhhh-----c--CCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHH-hCC
Confidence 34444 3334444442 1 29999999999999999999999999999999999999999995 999
Q ss_pred CceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHH
Q 004860 637 SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 716 (727)
Q Consensus 637 ~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 716 (727)
+|.+++|++.++...+ +.++++++..+. ..+.++ +++++++.|++|++|..++++++||+|++||++|+.|++.
T Consensus 479 ~v~~~~v~~~~~~~~g-~~~~~~v~~~~~-~~~~~~----l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~ 552 (560)
T PRK08974 479 KVLEVAAVGVPSEVSG-EAVKIFVVKKDP-SLTEEE----LITHCRRHLTGYKVPKLVEFRDELPKSNVGKILRRELRDE 552 (560)
T ss_pred CeeEEEEEeeecCCcc-eEEEEEEECCCC-CCCHHH----HHHHHHhhcccccCCcEEEEhhhCCCCCCCcEeHHHHHHH
Confidence 9999999999988777 788888776532 233333 4556778899999999999999999999999999999999
Q ss_pred Hhhhhcc
Q 004860 717 IKHELSV 723 (727)
Q Consensus 717 ~~~~~~~ 723 (727)
...+..+
T Consensus 553 ~~~~~~~ 559 (560)
T PRK08974 553 ARAKVDN 559 (560)
T ss_pred HHhhhcc
Confidence 8877654
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-61 Score=553.26 Aligned_cols=492 Identities=15% Similarity=0.122 Sum_probs=370.0
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+. .+.++++||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 49 a~~~p~~~a~~~~~~---~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~ 125 (614)
T PRK08180 49 AQEAPDRVFLAERGA---DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVS 125 (614)
T ss_pred HHHCCCCceeeeccC---CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeec
Confidence 368999999987532 12345899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCC-----HHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhh--CCCcEEEEcCCCCCCCCCCCcCcccHHHHhc
Q 004860 265 DSFA-----AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA--APLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (727)
Q Consensus 265 p~~~-----~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 337 (727)
|.++ .+++.+++++++++++|+++... ....+... .....++.... . ......+|.++..
T Consensus 126 ~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~-------~~~~~~~~~~~~~~~i~~~~~-~-----~~~~~~~~~~~~~ 192 (614)
T PRK08180 126 PAYSLVSQDFGKLRHVLELLTPGLVFADDGAA-------FARALAAVVPADVEVVAVRGA-V-----PGRAATPFAALLA 192 (614)
T ss_pred cccccccCCHHHHHHHHhcCCCcEEEEcCHHH-------HHHHHhhhccCCceEEEecCC-C-----CCcccccHHHHhc
Confidence 9998 79999999999999999975310 00011110 11112222110 0 0011245666654
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCC--CCCEEEEecccccccch-HH
Q 004860 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK--VGDVYCWPTNLGWVMGP-VI 414 (727)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~d~~l~~~~~~~~~~~-~~ 414 (727)
.... ...........++++++|+|||||||.||||++||+++++.+......+++. .++++++++|++|.++. +.
T Consensus 193 ~~~~--~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~ 270 (614)
T PRK08180 193 TPPT--AAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHN 270 (614)
T ss_pred cccc--cchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHH
Confidence 3211 0001111234578999999999999999999999999988877766666653 56899999999999887 56
Q ss_pred hHHhhhcCcEEEEecCCCCh---hhHHHHHHHhCCCEEEechHHHHHHHhcCC----CCCCCccceeEEEeecCCCChhh
Q 004860 415 LFSSFLNGATLALYQGSPLE---RSFGKFVQDAGVTVLGTVPSLVKAWRNTNC----LEGLDWTKIRSFASTGETSNVDD 487 (727)
Q Consensus 415 ~~~~l~~G~~lv~~~~~~~~---~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~----~~~~~l~~Lr~i~~gGe~l~~~~ 487 (727)
++.+|++|+++++.++.+++ ..+++.|+++++|+++++|+++..|++... ....++++||.+++||+++++++
T Consensus 271 ~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~ 350 (614)
T PRK08180 271 LGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDV 350 (614)
T ss_pred HHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHH
Confidence 77899999999997654443 467888999999999999999999876421 12345789999999999999999
Q ss_pred HHHHHhh----CC-CCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE----
Q 004860 488 DLWLSSK----AW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL---- 558 (727)
Q Consensus 488 ~~~~~~~----~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v---- 558 (727)
.+++.+. ++ ++++++.||+||++..++.... .....+++|+|++|++++|+|+++ .|||++
T Consensus 351 ~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~d~~~---------~GEi~vrg~~ 420 (614)
T PRK08180 351 WDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTG-PLSRAGNIGLPAPGCEVKLVPVGG---------KLEVRVKGPN 420 (614)
T ss_pred HHHHHHHHHhhcCCCceeeeeecccccCCceEeccc-ccCCCCcccCccCCcEEEEecCCC---------CcEEEEecCc
Confidence 8877753 22 3679999999999865443322 234567899999999999998632 289988
Q ss_pred -ecccCCCCccccccccccccccccccCCCceeeeeCceEEE----ecCceEEEEeecCCeeec-Cceeec--hHHHHHH
Q 004860 559 -FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR----TVGGYIIVQGRADDTMNL-GGIKTS--SVEIERV 630 (727)
Q Consensus 559 -~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~----~~dG~l~~~GR~dd~ik~-~G~ri~--~~eIE~~ 630 (727)
..||+++ ++.+++.|..+ .||+|||+|++ |+||+++|+||+||+||+ +|++|+ +.|||.+
T Consensus 421 v~~GY~~~------p~~t~~~~~~d------gw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~ 488 (614)
T PRK08180 421 VTPGYWRA------PELTAEAFDEE------GYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAV 488 (614)
T ss_pred cchhhcCC------hhHhHhhcccC------CceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHH
Confidence 3566653 34555566422 39999999999 468999999999999985 798766 7899999
Q ss_pred HhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCC---------------CCChHHHHHHHHHHHHhhc----CCCccc
Q 004860 631 CDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF---------------TSQPDKLKMIFSKAIQSKL----NPLFKV 691 (727)
Q Consensus 631 l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~---------------~~~~~~l~~~l~~~l~~~L----~~~~~P 691 (727)
+. .||.|.+|+|++.++ +.+.|+|+++++. ..+.+++++++++.|.+.. +.+.+|
T Consensus 489 l~-~~p~V~~a~V~g~~~-----~~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p 562 (614)
T PRK08180 489 SA-GAPLVQDVVITGHDR-----DEIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRV 562 (614)
T ss_pred hh-cCchhheEEEEcCCC-----CceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhhe
Confidence 85 899999999999875 4678898887541 1234567777666654322 223389
Q ss_pred ceEEEcCCCCCCC------CchhhHHHHHHHHhhhhcc
Q 004860 692 SLVKVVPEFPRTA------SNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 692 ~~i~~v~~lP~t~------~GKvdR~~L~~~~~~~~~~ 723 (727)
.++++++++|+|+ +||+.|+++.+.|++++++
T Consensus 563 ~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~ 600 (614)
T PRK08180 563 ARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEA 600 (614)
T ss_pred eEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHH
Confidence 9999999999775 5578999999999988875
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-61 Score=550.55 Aligned_cols=506 Identities=19% Similarity=0.210 Sum_probs=373.8
Q ss_pred CCCCCCceEEEEec-CCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 186 RRKEDNTVAIVWRE-DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 186 a~~~pd~~Al~~~~-~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
++++||++|+.+.. ..+..+.+..+||+||.++++++|+.|.+. +++||+|+|+++|+++|++++|||+++|+++||+
T Consensus 52 ~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl 131 (660)
T PLN02430 52 VEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPL 131 (660)
T ss_pred HHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEe
Confidence 36899999997642 111223445689999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCC---CCCCcCcccHHHHhcc
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVG---IPLREQDLSWKDFLSS 338 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~ 338 (727)
++.++++++.+++++++++++++++.... ..........+. .++++........ ........+|++++..
T Consensus 132 ~~~~~~~~l~~il~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (660)
T PLN02430 132 YDTLGPGAVDYIVDHAEIDFVFVQDKKIK-----ELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHM 206 (660)
T ss_pred ccCCCHHHHHHHHhccCCCEEEECHHHHH-----HHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHh
Confidence 99999999999999999999999864210 001111111111 2222321110000 0001123467776654
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchh-----cCCCCCCEEEEecccccccchH
Q 004860 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-----IDLKVGDVYCWPTNLGWVMGPV 413 (727)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~-----~~~~~~d~~l~~~~~~~~~~~~ 413 (727)
....+ .......++++++|+|||||||.||||++||++++..+...... .+++++|++++++|++|.++..
T Consensus 207 ~~~~~----~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~ 282 (660)
T PLN02430 207 GKENP----SETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRM 282 (660)
T ss_pred hccCC----CCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHH
Confidence 33211 11122357999999999999999999999999998876654221 2578899999999999998876
Q ss_pred HhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCC-----------------------------
Q 004860 414 ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC----------------------------- 464 (727)
Q Consensus 414 ~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~----------------------------- 464 (727)
..+.++..|+++++..+ ++..+++.|++.++|++.++|.+++.+.+...
T Consensus 283 ~~~~~l~~G~~i~~~~~--~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (660)
T PLN02430 283 IEEYFFRKGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360 (660)
T ss_pred HHHHHHHcCCEEEEeCC--ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCC
Confidence 55667889999988754 45789999999999999999999988764200
Q ss_pred ----CCC-CC----------c-cceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccc
Q 004860 465 ----LEG-LD----------W-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 528 (727)
Q Consensus 465 ----~~~-~~----------l-~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG 528 (727)
... .+ + ++||.+++||+++++++.++++ .++.+.+++.||+||+++.++...+......+++|
T Consensus 361 ~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG 439 (660)
T PLN02430 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVG 439 (660)
T ss_pred CCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeeeecchhhhhhceEeeccccCCCCCCcc
Confidence 000 00 1 5899999999999999866654 44456899999999998755544333333468899
Q ss_pred cCCCCceEEEEC--CCC-CcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEe
Q 004860 529 TATMTAGLVILD--ECG-VPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600 (727)
Q Consensus 529 ~p~~~~~~~vld--~~~-~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~ 600 (727)
+|++++++++.| +.+ .+++.|. .|||+| ..||++ +++.|++.|. .| ||+|||+|++|
T Consensus 440 ~p~~~~evki~d~~~~g~~~~~~~~--~GEi~vrg~~v~~GY~~------~~e~t~~~~~-----dG--w~~TGDig~~d 504 (660)
T PLN02430 440 APAVYNELRLEEVPEMGYDPLGEPP--RGEICVRGKCLFSGYYK------NPELTEEVMK-----DG--WFHTGDIGEIL 504 (660)
T ss_pred CCCCceEEEEEEcCCcCcccCCCCC--cceEEecCCCccccccC------ChHHhhhhhh-----cc--ceeccceEEEC
Confidence 999999999986 333 4455554 499998 346655 3445666662 12 99999999999
Q ss_pred cCceEEEEeecCCeeec-CceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCC----------CC-
Q 004860 601 VGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF----------TS- 668 (727)
Q Consensus 601 ~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~----------~~- 668 (727)
+||+|+++||+||+||+ +|++|+|.+||++|. +||.|.+|+|++.. .+ +.++|+|++++.. ..
T Consensus 505 ~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~-~~p~V~~~~V~G~~---~~-~~~~A~vv~~~~~~~~~~~~~~~~~~ 579 (660)
T PLN02430 505 PNGVLKIIDRKKNLIKLSQGEYVALEYLENVYG-QNPIVEDIWVYGDS---FK-SMLVAVVVPNEENTNKWAKDNGFTGS 579 (660)
T ss_pred CCCcEEEEEcccccEEcCCCcEEchHHHHHHHh-cCCCeeEEEEEecC---Cc-ceEEEEEEcCHHHHHHHHHhCCCCCC
Confidence 99999999999999997 699999999999995 99999999999832 23 7899999986421 00
Q ss_pred -----ChHHHHHHHHHHH-----HhhcCCCcccceEEEcCC-C-----CCCCCchhhHHHHHHHHhhhhcc
Q 004860 669 -----QPDKLKMIFSKAI-----QSKLNPLFKVSLVKVVPE-F-----PRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 669 -----~~~~l~~~l~~~l-----~~~L~~~~~P~~i~~v~~-l-----P~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
+..++++.+.+.+ ++.|+.|.+++.|+++++ + .+||++|+.|+.+.+.|++.+++
T Consensus 580 ~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~ 650 (660)
T PLN02430 580 FEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDE 650 (660)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHH
Confidence 1123444444433 246999999999998764 3 49999999999999999888764
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-60 Score=533.18 Aligned_cols=479 Identities=20% Similarity=0.143 Sum_probs=378.2
Q ss_pred eecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEee
Q 004860 209 LMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 287 (727)
Q Consensus 209 ~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~ 287 (727)
.+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++++++++++++
T Consensus 11 ~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~ 90 (502)
T PRK08276 11 VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVS 90 (502)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEc
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCCccccchHHHhhhCC--CcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCC
Q 004860 288 DFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365 (727)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TS 365 (727)
+... .......+..+ ...+.+... . ......|.+....... ......++.++++|||
T Consensus 91 ~~~~------~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~--------~~~~~~~~~a~i~~TS 149 (502)
T PRK08276 91 AALA------DTAAELAAELPAGVPLLLVVAG-P------VPGFRSYEEALAAQPD--------TPIADETAGADMLYSS 149 (502)
T ss_pred cchh------hHHHHHhhhccccccEEEEeCC-C------CCccccHHHHHhcCCC--------CCCCCCCcceEEEECC
Confidence 7543 11112222222 122222111 0 0122345544332111 1112446789999999
Q ss_pred CCCCCCCeEEecChHHHHH------HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCCCChhhHHH
Q 004860 366 GTTGEPKAIPWTQLSSIRC------TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK 439 (727)
Q Consensus 366 GSTG~PKgV~~th~~l~~~------~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~ 439 (727)
||||.||||+++|.++... .......+....++++++..|+.|..++...+.++..|+++++.+ ..++..+++
T Consensus 150 GtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~ 228 (502)
T PRK08276 150 GTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVME-KFDAEEALA 228 (502)
T ss_pred CCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcC-CCCHHHHHH
Confidence 9999999999998775422 122222233457889999999999988876778999999998876 467889999
Q ss_pred HHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCC
Q 004860 440 FVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS 517 (727)
Q Consensus 440 ~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 517 (727)
.++++++|++.++|+++..++.... ....+++++|.+++||++++.++.+++.+.+ +..+++.||+||++.++....
T Consensus 229 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~ 307 (502)
T PRK08276 229 LIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITS 307 (502)
T ss_pred HHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecC
Confidence 9999999999999999999987643 2345688999999999999999999888766 567999999999987444333
Q ss_pred CCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccccCCCceeeeeCceE
Q 004860 518 LLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII 597 (727)
Q Consensus 518 ~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~ 597 (727)
.......+++|+|+ +..++|+|+++++++.|+. ||+++..+... ..++.+++.+...|.++ .||+|||+|
T Consensus 308 ~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~-~gy~~~~~~~~~~~~~~------~~~~TGD~~ 377 (502)
T PRK08276 308 EDWLAHPGSVGKAV-LGEVRILDEDGNELPPGEI--GTVYFEMDGYP-FEYHNDPEKTAAARNPH------GWVTVGDVG 377 (502)
T ss_pred ccccccCCCcceec-ccEEEEECCCCCCCcCCCc--eEEEEECCCcc-chhcCCHHHHHHHhcCC------CceeecceE
Confidence 22233456899999 8899999999999999985 99999522221 11222333455455432 399999999
Q ss_pred EEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHH
Q 004860 598 KRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIF 677 (727)
Q Consensus 598 ~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l 677 (727)
++++||.+++.||+|++||++|.+|++.|||.+|+ ++|+|.+++|++..++..+ +.++++|+++++...+ +.+.+.+
T Consensus 378 ~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~~~~i 454 (502)
T PRK08276 378 YLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLV-THPKVADVAVFGVPDEEMG-ERVKAVVQPADGADAG-DALAAEL 454 (502)
T ss_pred EEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHH-hCCCcceEEEEeCCCcccC-ceEEEEEEECCCCCCC-hhhHHHH
Confidence 99999999999999999999999999999999996 8999999999999888777 8999999998764433 4455667
Q ss_pred HHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhcc
Q 004860 678 SKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 678 ~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
++.++++|++|++|..++++++||+|+|||++|+.|++.+..+.++
T Consensus 455 ~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~~~~ 500 (502)
T PRK08276 455 IAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEGRQR 500 (502)
T ss_pred HHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhhhhh
Confidence 7789999999999999999999999999999999999998776554
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=529.72 Aligned_cols=439 Identities=17% Similarity=0.176 Sum_probs=361.1
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+. .+||+||.++++++|+.|.+. +++||+|+++++|+++++++++||+++|++++|++
T Consensus 13 a~~~~~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~ 84 (458)
T PRK09029 13 AQVRPQAIALRLNDE--------VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLN 84 (458)
T ss_pred HHhCCCceeeecCCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecC
Confidence 368899999998766 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|..+.+++..++++++++++++++.... .. .+ . ...+. . ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~---~~----~--------------------~~~~~----~-~~--- 125 (458)
T PRK09029 85 PQLPQPLLEELLPSLTLDFALVLEGENT----FS---AL----T--------------------SLHLQ----L-VE--- 125 (458)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCcccc----hh---hc----c--------------------ccccc----c-cc---
Confidence 9999999999999999999998764310 00 00 0 00000 0 00
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcE
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (727)
........++++++++|||||||.||||+++|++++..+......+++.++|+++...|+.|.+++..++.+|..|++
T Consensus 126 --~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~ 203 (458)
T PRK09029 126 --GAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGAT 203 (458)
T ss_pred --ccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCce
Confidence 011123457899999999999999999999999999988877778899999999999999999998767788999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
+++.+. ..+++.+ .++|.+..+|+++..|...... ..++|.+++||+++++.+.+++... ++++++.|
T Consensus 204 v~~~~~----~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~Y 271 (458)
T PRK09029 204 LVVRDK----QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGY 271 (458)
T ss_pred EEeCCh----HHHHHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccc
Confidence 998764 4566777 4899999999999998875432 3479999999999999988877654 68899999
Q ss_pred cccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccc
Q 004860 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYF 579 (727)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f 579 (727)
|+||++...+.... ....++|+|++++.++|+| |||++ ..||++.+. .+..
T Consensus 272 G~tE~~~~~~~~~~---~~~~~~G~~~~~~~~~i~~-------------gel~v~g~~~~~gY~~~~~------~~~~-- 327 (458)
T PRK09029 272 GLTEMASTVCAKRA---DGLAGVGSPLPGREVKLVD-------------GEIWLRGASLALGYWRQGQ------LVPL-- 327 (458)
T ss_pred cccccCcceeccCC---CCCCCCCCCCCCCEEEEeC-------------CEEEEecCceeeeeecCcc------cccc--
Confidence 99999864332221 1234699999999999986 45555 566665332 2211
Q ss_pred cccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEE
Q 004860 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (727)
Q Consensus 580 ~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~ 659 (727)
..+..||+|||+|+++ ||+++|.||+||+||++|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++
T Consensus 328 -----~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~a~ 399 (458)
T PRK09029 328 -----VNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVIN-QHPLVQQVFVVPVADAEFG-QRPVAV 399 (458)
T ss_pred -----ccCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHh-cCCCcceEEEEccCCcccC-ceEEEE
Confidence 1234599999999999 9999999999999999999999999999995 9999999999999998888 899999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhcc
Q 004860 660 VVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 660 vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
|+...+ .+.++ |+++++++|++|++|..+++++++|+|++||++|+.|++++.+..++
T Consensus 400 v~~~~~--~~~~~----l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~~~~ 457 (458)
T PRK09029 400 VESDSE--AAVVN----LAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQLGN 457 (458)
T ss_pred EEcCcc--cCHHH----HHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhccCC
Confidence 987632 33344 45567788999999999999999999999999999999999887654
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=533.95 Aligned_cols=497 Identities=21% Similarity=0.221 Sum_probs=375.8
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
+.+|+++|+.+.+. .+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++|
T Consensus 29 ~~~~~~~a~~~~~~--------~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~~ 100 (545)
T PRK08162 29 EVYPDRPAVIHGDR--------RRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNT 100 (545)
T ss_pred HHCCCCeEEEECCe--------EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEecccc
Confidence 68999999998766 899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC-cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
.++.+++.+++++++++.+++++... +.........+. +.+++.............+..++.+++.....
T Consensus 101 ~~~~~~~~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 171 (545)
T PRK08162 101 RLDAASIAFMLRHGEAKVLIVDTEFA------EVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDP--- 171 (545)
T ss_pred ccChHHHHHHHHhCCCeEEEEccchh------hHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCc---
Confidence 99999999999999999999987532 111121122222 23333322111000001123345555543221
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcE
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (727)
..........+++++|+|||||||.||||+++|+++..........+++..++++++..|+.|..+....+...+.|++
T Consensus 172 -~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~ 250 (545)
T PRK08162 172 -DFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGT 250 (545)
T ss_pred -cccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccE
Confidence 0111112234679999999999999999999999876666555556778889999999999998887544444445666
Q ss_pred EEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
.++.. ..++..+++.|+++++|++.++|++++.|++........+.+++.++++|+.+++...+++... ++++++.|
T Consensus 251 ~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~Y 327 (545)
T PRK08162 251 NVCLR-KVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVY 327 (545)
T ss_pred EEEeC-CCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCceeecc
Confidence 55554 4678999999999999999999999999987654333345566777899999998888777653 68899999
Q ss_pred cccccccccccCCCC------C----CccccccccCCC-CceEEEECC-CCCcCCCCCCeeeeEEEe-----cccCCCCc
Q 004860 505 GGTELSSAYIQGSLL------Q----PQAFGAFSTATM-TAGLVILDE-CGVPYPDDQPCVGEVGLF-----PLYLGASD 567 (727)
Q Consensus 505 G~TE~~~~~~~~~~~------~----~~~~~~iG~p~~-~~~~~vld~-~~~~~p~G~~giGel~v~-----~~y~~~~~ 567 (727)
|+||+++.+..+... . .....+.|.+.+ +..++|+|+ +++++|.+...+|||++. .||++
T Consensus 328 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~--- 404 (545)
T PRK08162 328 GLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLK--- 404 (545)
T ss_pred cccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcC---
Confidence 999986443332110 0 011234566655 346889994 688887632125999983 45555
Q ss_pred cccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeec
Q 004860 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647 (727)
Q Consensus 568 ~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~ 647 (727)
+++.+...|.. .||+|||+|++++||+++++||.||+||++|++|+|.|||++|. .||+|.+++|++.+
T Consensus 405 ---~~~~~~~~~~~-------g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~vv~~~ 473 (545)
T PRK08162 405 ---NPKATEEAFAG-------GWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLY-RHPAVLVAAVVAKP 473 (545)
T ss_pred ---ChhhhHHHhhC-------CCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHH-hCCcccEEEEEeee
Confidence 33455555531 29999999999999999999999999999999999999999995 99999999999998
Q ss_pred CCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhccc
Q 004860 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVR 724 (727)
Q Consensus 648 ~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 724 (727)
++..+ +.++++++++++...+.+++ ++.+++.|++|++|..+++ ++||+|+|||++|+.|++++....+++
T Consensus 474 ~~~~~-~~~~~~v~~~~~~~~~~~~l----~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~l~~~~ 544 (545)
T PRK08162 474 DPKWG-EVPCAFVELKDGASATEEEI----IAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKSLKAID 544 (545)
T ss_pred ccccC-ceEEEEEEeCCCCCCCHHHH----HHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhhhhhhc
Confidence 87777 89999999887655554544 4457778999999998875 689999999999999999877665543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-60 Score=579.89 Aligned_cols=486 Identities=18% Similarity=0.188 Sum_probs=376.5
Q ss_pred CCC-CCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKE-DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~-pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
+++ |+++|+.+.+. +++||+||+++++++|+.|++-+++||+|+++++|+++++++++||+++|++++|+||
T Consensus 642 ~~~~~~~~ai~~~~~-------~~~Ty~el~~~~~~lA~~L~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~ 714 (1140)
T PRK06814 642 KIHGFKKLAVEDPVN-------GPLTYRKLLTGAFVLGRKLKKNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINF 714 (1140)
T ss_pred HHcCCCCeEeECCCC-------CccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcCC
Confidence 455 46788876332 2899999999999999999633999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC--CcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
.++.+++.+++++++++++++++......+. ....+..+ ..++.++..... . .....+.+.......
T Consensus 715 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~--~---~~~~~~~~~~~~~~~-- 783 (1140)
T PRK06814 715 SAGIANILSACKAAQVKTVLTSRAFIEKARL----GPLIEALEFGIRIIYLEDVRAQ--I---GLADKIKGLLAGRFP-- 783 (1140)
T ss_pred CCCHHHHHHHHHHcCCCEEEecHHHHhhhcc----hhHHHHhccCceEEEehHhhcc--C---ChHHHHHHHhhccCC--
Confidence 9999999999999999999998754321111 11111111 122222211000 0 000011111111110
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcC
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G 422 (727)
........++|+++++|||||||.||||+++|+++.+.+......++++++|++++..|+.|..+. +.++.++..|
T Consensus 784 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 860 (1140)
T PRK06814 784 ---LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSG 860 (1140)
T ss_pred ---ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcC
Confidence 001113467999999999999999999999999999888887788899999999999999999988 6788999999
Q ss_pred cEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccc
Q 004860 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (727)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (727)
+++++.+...+...+.+.++++++|++..+|++++.+.+.. ...+++++|.+++|||++++++.+++.+.+ +++++|
T Consensus 861 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~ 937 (1140)
T PRK06814 861 VKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILE 937 (1140)
T ss_pred CEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEe
Confidence 99999875556677889999999999999999999987653 345688999999999999999988887765 678999
Q ss_pred cccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEe-----cccCCCCccccccccccc
Q 004860 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEV 577 (727)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~~~~ 577 (727)
.||+||++..++.... .....+++|+|++++++++.+..+ .|+. |||++. .||++. +. ..
T Consensus 938 ~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~g~~~~~~~~~~----~~~~--Gel~v~g~~~~~gY~~~-------~~-~~ 1002 (1140)
T PRK06814 938 GYGVTETAPVIALNTP-MHNKAGTVGRLLPGIEYRLEPVPG----IDEG--GRLFVRGPNVMLGYLRA-------EN-PG 1002 (1140)
T ss_pred ccccccccceEEecCC-CCCCCCcCCccCCCCeEEEeecCC----CCCc--eEEEEeCCCcchhhcCC-------CC-CC
Confidence 9999999875544332 224457899999999999987543 2453 999983 444432 11 11
Q ss_pred cccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
.+. + .+++||+|||+|++|+||+++++||.||+||++|+||+|.|||++|. +||.|.+++|++.+++..+ +.++
T Consensus 1003 ~~~--~--~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~vv~~~~~~~g-~~~~ 1076 (1140)
T PRK06814 1003 VLE--P--PADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAA-ELWPDALHAAVSIPDARKG-ERII 1076 (1140)
T ss_pred ccc--c--CCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHH-hcCCcccEEEEEcccCCCC-ceEE
Confidence 111 1 13349999999999999999999999999999999999999999995 8999999999999998887 7887
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHh-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhccc
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVR 724 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 724 (727)
+++.. .+.+.+++.++ +++ .+++|++|..+++++++|+|+|||+||++|++++.+....+
T Consensus 1077 ~~~~~---~~~~~~~l~~~----~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~ 1137 (1140)
T PRK06814 1077 LLTTA---SDATRAAFLAH----AKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAAAKP 1137 (1140)
T ss_pred EEEcC---CCcCHHHHHHH----HHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhhccc
Confidence 77542 23444555554 443 59999999999999999999999999999999988776544
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=514.82 Aligned_cols=406 Identities=14% Similarity=0.127 Sum_probs=344.6
Q ss_pred EEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHH
Q 004860 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (727)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l 272 (727)
++++.++ ++||+||.++++++|+.|. . +++|++|+|+++|+++++++++||+++|++++|++|..+.+++
T Consensus 1 ~~~~~~~--------~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~ 71 (414)
T PRK08308 1 MLIVNDE--------EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAA 71 (414)
T ss_pred CeEecCc--------eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHH
Confidence 4667666 9999999999999999985 6 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCcc
Q 004860 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (727)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (727)
..++++++++++++++... . ... ...
T Consensus 72 ~~~~~~~~~~~~i~~~~~~------~---------------------------------~~~---------------~~~ 97 (414)
T PRK08308 72 IRMAKRAGCHGLLYGESDF------T---------------------------------KLE---------------AVN 97 (414)
T ss_pred HHHHHhCCCCEEEecCccc------c---------------------------------ccc---------------CCC
Confidence 9999999999999865210 0 000 001
Q ss_pred CCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEEEecCC
Q 004860 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGS 431 (727)
Q Consensus 353 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~ 431 (727)
..+++++|++|||||||.||||+++|+++.+.+......+++..+|+++..+|+.|++++ ..++.+|..|+++++.+ .
T Consensus 98 ~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~ 176 (414)
T PRK08308 98 YLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT-N 176 (414)
T ss_pred CCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC-C
Confidence 245789999999999999999999999999888877778889999999999999999987 56889999999999986 4
Q ss_pred CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccccccccccc
Q 004860 432 PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511 (727)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 511 (727)
.++..+++.++++++|++.++|+++..|.+.... ..+++.+++||++++++..+.+.+. ..+++|.||+||+++
T Consensus 177 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~ 250 (414)
T PRK08308 177 KNPKFALNILRNTPQHILYAVPLMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGC 250 (414)
T ss_pred CCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCC
Confidence 6788899999999999999999999999875422 1368899999999999988888765 468999999999986
Q ss_pred ccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccccCCCceee
Q 004860 512 AYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR 591 (727)
Q Consensus 512 ~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~y 591 (727)
...... ....+++|+|++++++++.++. |++ ||+++..+ .+||
T Consensus 251 ~~~~~~---~~~~~~~G~p~~~~~~~~~~~~------~~~--gel~v~~~--------------------------~~~~ 293 (414)
T PRK08308 251 VSICPD---MKSHLDLGNPLPHVSVSAGSDE------NAP--EEIVVKMG--------------------------DKEI 293 (414)
T ss_pred eeecCC---CCCCCccCccCCCeEEEEecCC------CCC--ceEEEEcC--------------------------CceE
Confidence 433221 1234679999999999998643 343 89887421 1389
Q ss_pred eeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChH
Q 004860 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD 671 (727)
Q Consensus 592 rTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~ 671 (727)
+|||+|++++||+++++||.||+||++|+||+|.|||++|. .+|+|.+|+|++.+++..+ +.++++++... ..+.+
T Consensus 294 ~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~-~~~~v~~a~v~~~~~~~~~-~~~~~~v~~~~--~~~~~ 369 (414)
T PRK08308 294 FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVML-RLPGVQEAVVYRGKDPVAG-ERVKAKVISHE--EIDPV 369 (414)
T ss_pred ECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCCC-ceEEEEEEeCC--CCCHH
Confidence 99999999999999999999999999999999999999995 8999999999999988777 88999988764 34545
Q ss_pred HHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHH
Q 004860 672 KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714 (727)
Q Consensus 672 ~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 714 (727)
++++ .++++|++|++|..++++++||+|++||++|+.|+
T Consensus 370 ~l~~----~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 370 QLRE----WCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLE 408 (414)
T ss_pred HHHH----HHHHhCccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence 5544 57788999999999999999999999999999554
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-61 Score=555.98 Aligned_cols=553 Identities=20% Similarity=0.200 Sum_probs=433.7
Q ss_pred HHHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCCC----ccc
Q 004860 12 DLMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPP----LYW 86 (727)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~----~~~ 86 (727)
|+..++.......+|.+.++++.+. +.+++||++||+. +++.+.+.+..+ .++ |+++|++++...... ...
T Consensus 66 n~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~h~~~p~~~-l~~~~~~~~~~~-~~l--~~~~~~~~~~~~~~~~~~~~~~ 141 (642)
T COG1020 66 NTLPLRLDISGRVTFAELLARLRELALGALEHQDLPGEQ-LVERLGRERSLS-EPL--FDVVFVLQNGPTAGLKLPGLRV 141 (642)
T ss_pred eeeeeeeccCCCCCHHHHHHHHHHHHHHHhhccCCCHHH-HHHHHhhhccCC-CCc--eeeEEEecCccccccccccccc
Confidence 4556677777777777777777777 9999999999999 999999888887 777 999999987644331 111
Q ss_pred cC--ChhhhcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeee--ecCCCCC
Q 004860 87 FP--SLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKS 161 (727)
Q Consensus 87 ~~--~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~ 161 (727)
.. ......++|+.+.+.+. ++...+ |.+ ++|++.+++++..+|..++..+..+++.....+ +...++
T Consensus 142 ~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ll~~~e~- 213 (642)
T COG1020 142 EELGIETPAAKLDLALAVVEG--GLRLSFDYAR-----ELFDAETIERELRHFLQLLAALADAPRTSLSALPLLLPSER- 213 (642)
T ss_pred ccccccCcccccceEEEEEeC--ceEEEEEeec-----ccCCHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCCHHHH-
Confidence 11 11345677877776665 566666 888 999999999999999999999987777444432 333322
Q ss_pred CCCCCcCCCCcccHhhhhccC--CCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEE
Q 004860 162 KHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238 (727)
Q Consensus 162 ~~~~~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai 238 (727)
..|+......+...+++. ..++.++|+++|+++.+. .+||+||+.+++++|+.|.+. ++++++|++
T Consensus 214 ---~~~~~~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~~~~--------~lty~el~~~a~~la~~l~~~g~~~~~~V~i 282 (642)
T COG1020 214 ---EVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQ--------QLTYAELDARANRLARLLISLGVGPGETVAI 282 (642)
T ss_pred ---hhccccccCCCccchHHHHHHHHHHhCCCceeEecCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 346622222221223332 446789999999999866 899999999999999999999 999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCC
Q 004860 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIG 318 (727)
Q Consensus 239 ~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 318 (727)
+++++++++++++|++|+|++|+|+||.+|.+|+.+++++++++.+++...........+.
T Consensus 283 ~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------- 343 (642)
T COG1020 283 LADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG------------------- 343 (642)
T ss_pred EcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc-------------------
Confidence 9999999999999999999999999999999999999999999999998533211000000
Q ss_pred CCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCC
Q 004860 319 NDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGD 398 (727)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d 398 (727)
+..+........ .........+++++|++|||||||+||||+++|+++++.+.+....+.++.+|
T Consensus 344 -----------~~~~~~~~~~~~----~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d 408 (642)
T COG1020 344 -----------LALDDALSEIPD----TDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADD 408 (642)
T ss_pred -----------cccccccccCCc----cCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCccc
Confidence 000000000000 00001234568999999999999999999999999999888888889999999
Q ss_pred EEEEecccccccchHHhHHhhhcCcEEEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCC--CCCCcccee
Q 004860 399 VYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIR 474 (727)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr 474 (727)
+++..++++||.+.+++|.+++.|+++++.+.. .++..+.+.+.++++|++..+|+++..+...... .......+|
T Consensus 409 ~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr 488 (642)
T COG1020 409 RVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLR 488 (642)
T ss_pred EEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCccccc
Confidence 999999999999999999999999999998753 4778899999999999999999999999876221 112233599
Q ss_pred EEEeecCCCChhhHHHHHhhCC-CCcccccccccccccccccCCCCCCcc-ccccccCCCCceEEEECCCCCcCCCCCCe
Q 004860 475 SFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQA-FGAFSTATMTAGLVILDECGVPYPDDQPC 552 (727)
Q Consensus 475 ~i~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~-~~~iG~p~~~~~~~vld~~~~~~p~G~~g 552 (727)
.+++|||.++..+...+....+ ...+.|.||+||+++.+.......... ..++|+|++|.+++|+|+.++++|.|+.
T Consensus 489 ~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~- 567 (642)
T COG1020 489 QLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVP- 567 (642)
T ss_pred EEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCC-
Confidence 9999999999999887665544 467999999999776544333222111 4689999999999999999999999997
Q ss_pred eeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHH
Q 004860 553 VGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (727)
Q Consensus 553 iGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (727)
||+++ +.||+++ ++.|.++|..+ ++|+|||++|+++||.++++||.|+|||++|+||+++||
T Consensus 568 -gel~i~g~~~a~gy~~~------p~lt~~~f~~~------~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~ei 634 (642)
T COG1020 568 -GELYIAGLGLALGYLNR------PDLTAERFIAL------RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEI 634 (642)
T ss_pred -eeeEECCcchhhhhcCC------hhhhHHHhhhc------cCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHH
Confidence 88887 5666664 45888888876 489999999999999999999999999999999999999
Q ss_pred HHHHhhcCC
Q 004860 628 ERVCDQADE 636 (727)
Q Consensus 628 E~~l~~~~p 636 (727)
|..+. ++|
T Consensus 635 e~~l~-~~~ 642 (642)
T COG1020 635 EAALA-EQP 642 (642)
T ss_pred HHHHh-cCC
Confidence 99995 665
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=537.59 Aligned_cols=495 Identities=17% Similarity=0.147 Sum_probs=364.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+. ..+.++.+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 59 a~~~pd~~a~~~~~~--~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~ 136 (624)
T PRK12582 59 AAEAPDRPWLAQREP--GHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVS 136 (624)
T ss_pred HHHCCCchheecccC--CCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeecc
Confidence 478999999987542 123456899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCH-----HHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhccc
Q 004860 265 DSFAA-----REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (727)
Q Consensus 265 p~~~~-----~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (727)
|.++. +++.+++++++++++|+++.... ......+ .......+++..... ......+.++....
T Consensus 137 p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~-~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~ 205 (624)
T PRK12582 137 PAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPF----ARALAAL-DLLDVTVVHVTGPGE------GIASIAFADLAATP 205 (624)
T ss_pred CccccccCCHHHHHHHHHhcCCcEEEecCHHHH----HHHHHhh-hhcCceEEEEcCCCc------ccccccHHHHhhcC
Confidence 99985 89999999999999999763110 0000111 111122333221110 01223455554432
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCC---CCEEEEecccccccch-HHh
Q 004860 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV---GDVYCWPTNLGWVMGP-VIL 415 (727)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~---~d~~l~~~~~~~~~~~-~~~ 415 (727)
.. ...........++++++|+|||||||.||||+++|+++++........+.... +++++...|++|.++. ..+
T Consensus 206 ~~--~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~ 283 (624)
T PRK12582 206 PT--AAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANF 283 (624)
T ss_pred Cc--chhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHH
Confidence 11 00001112345789999999999999999999999999887765544444444 5799999999999887 446
Q ss_pred HHhhhcCcEEEEecCCCChh---hHHHHHHHhCCCEEEechHHHHHHHhcCCCC----CCCccceeEEEeecCCCChhhH
Q 004860 416 FSSFLNGATLALYQGSPLER---SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE----GLDWTKIRSFASTGETSNVDDD 488 (727)
Q Consensus 416 ~~~l~~G~~lv~~~~~~~~~---~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~----~~~l~~Lr~i~~gGe~l~~~~~ 488 (727)
+.++..|+++++.++.+++. .+++.++++++|++.++|++++.|.+..... ..++++||.+++||+++++++.
T Consensus 284 ~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~ 363 (624)
T PRK12582 284 NGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLY 363 (624)
T ss_pred HHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHH
Confidence 67899999999976544433 4567788999999999999999887542211 2346899999999999999998
Q ss_pred HHHHhhC----C-CCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----
Q 004860 489 LWLSSKA----W-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL----- 558 (727)
Q Consensus 489 ~~~~~~~----~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v----- 558 (727)
+++.+.. + ++++++.||+||++.++..... .....+++|+|++|++++|+ |.|+. |||+|
T Consensus 364 ~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~-------~~G~~--GEl~vrg~~v 433 (624)
T PRK12582 364 ERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHW-DTERVGLIGLPLPGVELKLA-------PVGDK--YEVRVKGPNV 433 (624)
T ss_pred HHHHHHHHhhcCCCceEEeccccccccceeecccC-CCCCCCCCCcCCCCcEEEEc-------cCCCc--eEEEEECCcc
Confidence 8887652 2 3579999999999865442222 22456789999999999985 45664 99998
Q ss_pred ecccCCCCccccccccccccccccccCCCceeeeeCceEEE-e---cCceEEEEeecCCeeec-CceeechHHHH--HHH
Q 004860 559 FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR-T---VGGYIIVQGRADDTMNL-GGIKTSSVEIE--RVC 631 (727)
Q Consensus 559 ~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~-~---~dG~l~~~GR~dd~ik~-~G~ri~~~eIE--~~l 631 (727)
..||++ +++.+++.|.. +.||+|||+|++ | +||+++|+||+||+||+ +|++|+|.+|| .++
T Consensus 434 ~~GY~~------~p~~t~~~f~~------dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l 501 (624)
T PRK12582 434 TPGYHK------DPELTAAAFDE------EGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVA 501 (624)
T ss_pred cccccC------CccchhhhcCc------cCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHH
Confidence 345655 34456666642 239999999998 4 56999999999999996 79999999885 566
Q ss_pred hhcCCCceeeEEEeecCCCCCceEEEEEEEecC----------CC----CCChHHHHHHHHHHH---HhhcCCCc-ccce
Q 004860 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKK----------GF----TSQPDKLKMIFSKAI---QSKLNPLF-KVSL 693 (727)
Q Consensus 632 ~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~----------~~----~~~~~~l~~~l~~~l---~~~L~~~~-~P~~ 693 (727)
.+||.|.+|+|++.+++. +.+.|++.. +. ..+.+++.++|++.| ++.++.+. +|.+
T Consensus 502 -~~~p~V~~a~VvG~~~~~-----~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 575 (624)
T PRK12582 502 -ACSPVIHDAVVAGQDRAF-----IGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIAR 575 (624)
T ss_pred -hcCcchheEEEEcCCCCc-----EEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEE
Confidence 489999999999986643 344444321 11 013356666666655 45677777 9999
Q ss_pred EEEcCCCC------CCCCchhhHHHHHHHHhhhhcc
Q 004860 694 VKVVPEFP------RTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 694 i~~v~~lP------~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
+++++++| +|++||+.|+...+.|++++++
T Consensus 576 ~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ 611 (624)
T PRK12582 576 ALLMTEPPSIDAGEITDKGYINQRAVLERRAALVER 611 (624)
T ss_pred EEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHH
Confidence 99999887 5577788899999999988875
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-58 Score=527.31 Aligned_cols=464 Identities=19% Similarity=0.202 Sum_probs=357.1
Q ss_pred cceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCC-------HHHHHHHHHh
Q 004860 207 VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA-------AREIATRLRV 278 (727)
Q Consensus 207 ~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~-------~~~l~~~l~~ 278 (727)
++.+||.||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.++ .+++.+++++
T Consensus 47 ~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~ 126 (579)
T PRK09192 47 EEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLAS 126 (579)
T ss_pred EEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHh
Confidence 45899999999999999999999 999999999999999999999999999999999987543 6899999999
Q ss_pred cCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCe
Q 004860 279 SKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV 358 (727)
Q Consensus 279 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (727)
++++++|+++... +.......... ... ..+|.++...... ........++++
T Consensus 127 ~~~~~il~~~~~~------~~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~-----~~~~~~~~~~~~ 178 (579)
T PRK09192 127 AQPAAIITPDELL------PWVNEATHGNP-LLH----------------VLSHAWFKALPEA-----DVALPRPTPDDI 178 (579)
T ss_pred cCCCEEEeChHHH------HHHHHhhcccc-ccc----------------eeehhhhcccCCC-----ccccCCCCCCCe
Confidence 9999999987532 11111110110 001 1123332221111 011123456899
Q ss_pred EEEEeCCCCCCCCCeEEecChHHHHHHHhhch-hcCCCCCCEEEEecccccccchHH-hHHhhhcCcEEEEecCC---CC
Q 004860 359 VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PL 433 (727)
Q Consensus 359 a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~~G~~lv~~~~~---~~ 433 (727)
+||+|||||||.||||+++|++++..+..... .+++.++|++++..|+.|++++.. ++.++..|+++++.+.. .+
T Consensus 179 a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 258 (579)
T PRK09192 179 AYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARR 258 (579)
T ss_pred EEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHC
Confidence 99999999999999999999999988877766 788999999999999999999865 56778999999776521 25
Q ss_pred hhhHHHHHHHhCCCEEEechHHHHHHHhcCC---CCCCCccceeEEEeecCCCChhhHHHHHhhCC-----CCccccccc
Q 004860 434 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC---LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCG 505 (727)
Q Consensus 434 ~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~---~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~-----~~~l~n~YG 505 (727)
+..+++.+.++++|++..+|.++..+..... ....+++++|.+++||+++++...+.+.+.+. ...+++.||
T Consensus 259 ~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG 338 (579)
T PRK09192 259 PLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYG 338 (579)
T ss_pred HHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccc
Confidence 6788999999999988776666655543221 22356889999999999999998887776643 135899999
Q ss_pred ccccccccccCCCCC---------------------------CccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE
Q 004860 506 GTELSSAYIQGSLLQ---------------------------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (727)
Q Consensus 506 ~TE~~~~~~~~~~~~---------------------------~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v 558 (727)
+||++..++...... .....++|+|++++.++|+|+++++++.|+. |||++
T Consensus 339 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~--Gel~i 416 (579)
T PRK09192 339 LAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVV--GHICV 416 (579)
T ss_pred cccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECCCCCCCCCCCE--EEEEe
Confidence 999986544322110 0112478999999999999999999999984 99998
Q ss_pred -----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhh
Q 004860 559 -----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (727)
Q Consensus 559 -----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~ 633 (727)
..||++. ..+...|.. ..||+|||+|++ ++|+++|+||+||+||++|++|+|.|||++|.
T Consensus 417 ~g~~~~~gY~~~-------~~~~~~~~~------dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~- 481 (579)
T PRK09192 417 RGPSLMSGYFRD-------EESQDVLAA------DGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAE- 481 (579)
T ss_pred cCCchhhhhcCC-------ccccccccC------CceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHH-
Confidence 2445442 334444432 239999999999 99999999999999999999999999999995
Q ss_pred cCCCce--eeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcC--CCCCCCCchhh
Q 004860 634 ADESIL--ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLL 709 (727)
Q Consensus 634 ~~p~V~--~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~--~lP~t~~GKvd 709 (727)
.||+|. +|+|++.+++. + +.++++++..++...+.+++.+++++.+.. .+++|..+++++ +||+|++||++
T Consensus 482 ~~p~V~~~~~~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~---~~~~~~~i~~~~~~~lP~t~~GKv~ 556 (579)
T PRK09192 482 QEPELRSGDAAAFSIAQEN-G-EKIVLLVQCRISDEERRGQLIHALAALVRS---EFGVEAAVELVPPHSLPRTSSGKLS 556 (579)
T ss_pred hcCCccCCcEEEEEeccCC-C-eeEEEEEEecCCChHHHHHHHHHHHHHHHH---HhCCCceEEEeCCCCcCCCCCcchh
Confidence 899998 88999988874 4 588888887765444556666666655432 467777777775 89999999999
Q ss_pred HHHHHHHHhhh
Q 004860 710 RRVLRDQIKHE 720 (727)
Q Consensus 710 R~~L~~~~~~~ 720 (727)
|++|++++...
T Consensus 557 R~~l~~~~~~~ 567 (579)
T PRK09192 557 RAKAKKRYLSG 567 (579)
T ss_pred HHHHHHHHHcC
Confidence 99999988653
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-58 Score=525.12 Aligned_cols=491 Identities=17% Similarity=0.180 Sum_probs=354.4
Q ss_pred CCCCCCceEEEEecCCC-CCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRC-DESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
+..+||++|+++.+..+ ..+..+++||+||.++++++|++|.+.-++||+|+|+++|++++++++|||+++|++++|++
T Consensus 11 a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g~~gd~V~l~~~n~~~~~~~~lA~~~~G~v~vpl~ 90 (578)
T PRK05850 11 ASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHGSTGDRAVILAPQGLEYIVAFLGALQAGLIAVPLS 90 (578)
T ss_pred HhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccHHHHHHHHHHcCceEEecC
Confidence 36899999999754210 11223589999999999999999998833799999999999999999999999999999999
Q ss_pred C---CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhC---C-CcEEEEcCCCCCCCCCCCcCcccHHHHhc
Q 004860 265 D---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---P-LKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (727)
Q Consensus 265 p---~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 337 (727)
+ ..+.+++.++|++++++++++++.... ......... . ..++.+.. ..+ ..
T Consensus 91 ~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------------~~~---~~ 148 (578)
T PRK05850 91 VPQGGAHDERVSAVLRDTSPSVVLTTSAVVD------DVTEYVAPQPGQSAPPVIEVDL-------------LDL---DS 148 (578)
T ss_pred CCCccchHHHHHHHHHhcCCCEEEEcHHHHH------HHHHHHhhcccccccceEeecc-------------ccc---cc
Confidence 7 457899999999999999999875431 111111100 0 01111100 000 00
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchh-cC-----CCCCCEEEEecccccccc
Q 004860 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-ID-----LKVGDVYCWPTNLGWVMG 411 (727)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~-~~-----~~~~d~~l~~~~~~~~~~ 411 (727)
.. ........++++++|+|||||||.||||+++|+++++.+...... +. ...++++++..|+.|+.+
T Consensus 149 --~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g 221 (578)
T PRK05850 149 --PR-----GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMG 221 (578)
T ss_pred --CC-----ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCch
Confidence 00 001123356899999999999999999999999998776554332 22 356889999999999999
Q ss_pred h-HHhHHhhhcCcEEEEecCC---CChhhHHHHHHHhCCCEEEechHH-HHHHHhcC---CCCCCCccceeEEEeecCCC
Q 004860 412 P-VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSL-VKAWRNTN---CLEGLDWTKIRSFASTGETS 483 (727)
Q Consensus 412 ~-~~~~~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~-l~~l~~~~---~~~~~~l~~Lr~i~~gGe~l 483 (727)
+ ..++.+++.|+++++.+.. .++..++++++++++++. .+|++ +..+.... .....+++++|.+++||+++
T Consensus 222 ~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~ 300 (578)
T PRK05850 222 LVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERV 300 (578)
T ss_pred hHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCC
Confidence 7 4588999999999998642 267889999999999866 45554 44343321 11234678999999999999
Q ss_pred ChhhHHHHHhhCC-----CCcccccccccccccccccCCCCCC------------------------ccccccccCCCCc
Q 004860 484 NVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP------------------------QAFGAFSTATMTA 534 (727)
Q Consensus 484 ~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~------------------------~~~~~iG~p~~~~ 534 (727)
++.+.+++.+.++ +..+++.||+||++..+.......+ ....++|.|. +.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~ 379 (578)
T PRK05850 301 HPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SP 379 (578)
T ss_pred CHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CC
Confidence 9999888777652 3468999999998754433221100 0012345554 57
Q ss_pred eEEEECC-CCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccc---ccc--CCCceeeeeCceEEEecCc
Q 004860 535 GLVILDE-CGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRG---MPM--YKGMCLRRHGDIIKRTVGG 603 (727)
Q Consensus 535 ~~~vld~-~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~---~p~--~~g~~~yrTGDl~~~~~dG 603 (727)
+++|+|+ +++++|.|+. |||++ +.||++ +++.+++.|.. +|. ..+..||+|||+|+++ ||
T Consensus 380 ~~~ivd~~~~~~~~~g~~--Gel~v~g~~~~~gY~~------~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G 450 (578)
T PRK05850 380 TVRIVDPDTCIECPAGTV--GEIWVHGDNVAAGYWQ------KPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EG 450 (578)
T ss_pred EEEEEcCCCCcCCCCCCE--EEEEEecCcccccccC------ChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CC
Confidence 8999994 5889999985 99999 346655 44466666642 121 1123599999999997 99
Q ss_pred eEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHH--HHHHHHHHH
Q 004860 604 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK--LKMIFSKAI 681 (727)
Q Consensus 604 ~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~--l~~~l~~~l 681 (727)
+++++||+||+||++|++|+|.|||++|. +||.+ +++|+++++. .+ +.++++|+++++...+.+. ....+++.+
T Consensus 451 ~l~~~GR~~d~i~~~G~~i~p~eIE~~l~-~~~~~-~~~v~~v~~~-~~-~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v 526 (578)
T PRK05850 451 ELFIVGRIKDLLIVDGRNHYPDDIEATIQ-EITGG-RVAAISVPDD-GT-EKLVAIIELKKRGDSDEEAMDRLRTVKREV 526 (578)
T ss_pred EEEEEcccccEEEECCeecCHHHHHHHHH-HhcCC-cEEEEEecCC-Cc-eEEEEEEEeccccCcchhhhhhHHHHHHHH
Confidence 99999999999999999999999999996 89985 4778888876 55 8899999988765433222 233444444
Q ss_pred HhhcCC--CcccceEEEcC--CCCCCCCchhhHHHHHHHHhhh
Q 004860 682 QSKLNP--LFKVSLVKVVP--EFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 682 ~~~L~~--~~~P~~i~~v~--~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
...++. +..|..+++++ +||+|++||++|++|++++.+.
T Consensus 527 ~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~ 569 (578)
T PRK05850 527 TSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQD 569 (578)
T ss_pred HHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence 444432 23566666664 8999999999999999998654
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-58 Score=505.66 Aligned_cols=430 Identities=21% Similarity=0.232 Sum_probs=347.7
Q ss_pred cHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecc
Q 004860 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 289 (727)
Q Consensus 211 TY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~ 289 (727)
||+||.++++++|+.|.+. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 8999999999999999999 999999999999999999999999999999999999999999999999999999999875
Q ss_pred cccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCC
Q 004860 290 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369 (727)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG 369 (727)
... +.+. ...+..+...... ..........+++++++|||||||
T Consensus 81 ~~~--~~~~------------------------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG 124 (436)
T TIGR01923 81 LEE--KDFQ------------------------------ADSLDRIEAAGRY----ETSLSASFNMDQIATLMFTSGTTG 124 (436)
T ss_pred ccc--ccee------------------------------ecchHhhhhcccc----cccccccCCcCceEEEEeCCCCCC
Confidence 310 0000 0011111111100 001112345688999999999999
Q ss_pred CCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEE
Q 004860 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 449 (727)
Q Consensus 370 ~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l 449 (727)
.||+|+++|+++...+.+....++++++|++++..|+.|..++..++.++..|+++++.+.. ..+++.|+++++|++
T Consensus 125 ~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~ 201 (436)
T TIGR01923 125 KPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHI 201 (436)
T ss_pred CCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEE
Confidence 99999999999998888888889999999999999999998888789999999999998643 388999999999999
Q ss_pred EechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCcccccccc
Q 004860 450 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 529 (727)
Q Consensus 450 ~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~ 529 (727)
.++|+++..|.+.... .+++|.+++||++++++..+++... ++.++|.||+||++..++...........++|+
T Consensus 202 ~~~P~~l~~l~~~~~~----~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 275 (436)
T TIGR01923 202 SLVPTQLNRLLDEGGH----NENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLHARPDVGR 275 (436)
T ss_pred EeHHHHHHHHHhCcCC----CCceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCccccccccCCCc
Confidence 9999999999886432 2689999999999999988877653 788999999999987555443322222234899
Q ss_pred CCCCceEEEECCCCCcCCCCCCeeeeEEEe-----cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCce
Q 004860 530 ATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604 (727)
Q Consensus 530 p~~~~~~~vld~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~ 604 (727)
|+++++++|.++.. ++ .||+++. .||++. .+.+...+ +..||+|||+|++++||+
T Consensus 276 ~~~~~~~~i~~~~~-----~~--~Gel~v~~~~~~~gy~~~------~~~~~~~~-------~~~~~~TGD~~~~~~dg~ 335 (436)
T TIGR01923 276 PLAGREIKIKVDNK-----EG--HGEIMVKGANLMKGYLYQ------GELTPAFE-------QQGWFNTGDIGELDGEGF 335 (436)
T ss_pred cCCCcEEEEEeCCC-----CC--ceEEEEECCccchhhCCC------hhhhhhhh-------cCCCeeccceEEEcCCCC
Confidence 99999999943322 13 3999983 344432 22222222 224999999999999999
Q ss_pred EEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhh
Q 004860 605 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684 (727)
Q Consensus 605 l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~ 684 (727)
+++.||.||+||++|.+|++.+||++|. .+|.|.+++|++.++...+ ..++++++.+++ .+..++.+ .+++.
T Consensus 336 ~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~--~~~~~l~~----~l~~~ 407 (436)
T TIGR01923 336 LYVLGRRDDLIISGGENIYPEEIETVLY-QHPGIQEAVVVPKPDAEWG-QVPVAYIVSESD--ISQAKLIA----YLTEK 407 (436)
T ss_pred EEEeccccCeEEeCCEeeCHHHHHHHHH-hCCCeeEEEEeCCcchhcC-CeeEEEEEECCC--CCHHHHHH----HHHHh
Confidence 9999999999999999999999999995 8999999999998877666 788999988753 44445544 46778
Q ss_pred cCCCcccceEEEcCCCCCCCCchhhHHHH
Q 004860 685 LNPLFKVSLVKVVPEFPRTASNKLLRRVL 713 (727)
Q Consensus 685 L~~~~~P~~i~~v~~lP~t~~GKvdR~~L 713 (727)
|++|++|..++++++||+|++||++|++|
T Consensus 408 l~~~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 408 LAKYKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred hhCCCCCeEEEEecCCCCCCCCceecccC
Confidence 89999999999999999999999999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-57 Score=493.30 Aligned_cols=486 Identities=22% Similarity=0.245 Sum_probs=364.7
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
++..+|+.+|+.+... +.+..+||+|+.+++.++|++|++. +.+||+|+|++.|+++|+++.+||+.+|++.||+
T Consensus 25 ~~~~~~~~~a~~~~~~----~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp~ 100 (613)
T COG1022 25 RVKDRPDGVALMYKEL----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100 (613)
T ss_pred HhhcCCcceeEeeecC----CcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEec
Confidence 3467888889987654 6778999999999999999999999 9779999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC---cEEEEcC-CCCC--CCCCC----CcCcccHH
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL---KAIVLPA-IGND--VGIPL----REQDLSWK 333 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~-~~~~--~~~~~----~~~~~~~~ 333 (727)
+++.+++++.++|+++++++++++.... .+....+....+. ....+.. .... ..... ..+...+
T Consensus 101 y~t~~~~~~~~iL~~se~~~i~~e~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (613)
T COG1022 101 YSTSTPEQLAYILNESESKVIFVENQEL-----LDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF- 174 (613)
T ss_pred CCCCCHHHHHHHHhcCCceEEEecchHH-----HHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh-
Confidence 9999999999999999999999987421 1222222221111 0000000 0000 00000 0001111
Q ss_pred HHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcC-CCCCCEEEEecccccccch
Q 004860 334 DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVYCWPTNLGWVMGP 412 (727)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~~~~~~~~~ 412 (727)
...... .........++|+|.|+|||||||.|||||+||+|+++.+......+. ++++|++++++|++|.+..
T Consensus 175 -~~~~~~-----~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er 248 (613)
T COG1022 175 -LIDSAG-----LEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFER 248 (613)
T ss_pred -hhcccc-----cccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHH
Confidence 011111 111123557899999999999999999999999999999999999987 9999999999999999988
Q ss_pred HH-hHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhc--------CC-------------------
Q 004860 413 VI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--------NC------------------- 464 (727)
Q Consensus 413 ~~-~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~--------~~------------------- 464 (727)
.. ....+..|+++.. ..++..+++.+.+.++|++..+|.+|+.+.+. ..
T Consensus 249 ~~~~~~~~~~g~~~~~---~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~ 325 (613)
T COG1022 249 AFEGGLALYGGVTVLF---KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISR 325 (613)
T ss_pred HHHHHHHhhcceEEEe---cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 54 4444555555444 34568999999999999999999999887532 00
Q ss_pred ----------------------CCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCc
Q 004860 465 ----------------------LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQ 522 (727)
Q Consensus 465 ----------------------~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~ 522 (727)
.+... .++|++++||+++++++..+++.. +++++++||+|||+..++.+.+ ...
T Consensus 326 ~~~~~~~~~~~~~~d~LVf~Kir~~lG-gri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~~~-~~~ 401 (613)
T COG1022 326 ALLGGGPLSWLLVADRLVFRKIRDALG-GRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVNPP-DRF 401 (613)
T ss_pred hhcccCCcchhhhhhHHHHHHHHHHhC-CcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEccc-cCc
Confidence 00111 389999999999999999998876 6999999999999986655544 446
Q ss_pred cccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceE
Q 004860 523 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII 597 (727)
Q Consensus 523 ~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~ 597 (727)
..+++|.|+|+++++|.|+ |||.| +.||++ +++.|++.|..+. ||+|||+|
T Consensus 402 ~~gtvG~p~p~~evKI~d~------------GEilVRG~~Vm~GYyk------~pe~Taeaf~~DG------Wf~TGDlg 457 (613)
T COG1022 402 VLGTVGKPLPGIEVKIADD------------GEILVRGPNVMKGYYK------NPEATAEAFTEDG------WFRTGDLG 457 (613)
T ss_pred ccCCcCCcCCCceEEEccC------------ceEEEecchhcchhcC------ChHHHhhhccccC------CcccCcee
Confidence 6789999999999999994 89988 456655 5668888998644 99999999
Q ss_pred EEecCceEEEEeecCCeeec-CceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCC---------
Q 004860 598 KRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT--------- 667 (727)
Q Consensus 598 ~~~~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~--------- 667 (727)
.+|++|+|.++||++|.||. +|++|.|+.||+.+ +.+|.|.+++|++ .+ . ..+.|.|++..+.-
T Consensus 458 ~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l-~~~~~I~qi~vvg-~~---k-~~~~AlIvp~~~~l~~~a~~~~~ 531 (613)
T COG1022 458 ELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKL-AKSPLIEQICVVG-DD---K-KFLVALIVPDFDALEKWAESLNK 531 (613)
T ss_pred EEcCCCcEEEeecccceEECCCCcccChHHHHHHH-hcCCCeeEEEEEe-cC---C-cceEEEEeCCHHHHHHHHHhccc
Confidence 99999999999999999996 89999999999999 5999999999998 32 1 67999999865310
Q ss_pred ---CChH------HHHHHHHHHH---HhhcCCCcccceEEEcC-CC-----CCCCCchhhHHHHHHHHhhhhcc
Q 004860 668 ---SQPD------KLKMIFSKAI---QSKLNPLFKVSLVKVVP-EF-----PRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 668 ---~~~~------~l~~~l~~~l---~~~L~~~~~P~~i~~v~-~l-----P~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
.+.+ .+.+.+...+ ...+..+..+..+..++ ++ -.|++=|+.|+.+.+.+.+.++.
T Consensus 532 ~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~~~~~i~~ 605 (613)
T COG1022 532 VISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDRYKDEIEA 605 (613)
T ss_pred cccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHhhhhHHHH
Confidence 1111 2222222222 23334455555565553 33 38899999999999998877654
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-56 Score=505.94 Aligned_cols=473 Identities=18% Similarity=0.161 Sum_probs=355.5
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
...|+.+|+...+. ...+||.||+++++++|++|.+. +++||+|+|+++|+++++++++||+++|++++|+++
T Consensus 13 ~~~~~~~~~~~~~~------~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l~~ 86 (545)
T PRK07768 13 RTSPRGMVTGEPDA------PVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLHQ 86 (545)
T ss_pred hCCCcceEEecCCC------ceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccccccCC
Confidence 56799998866543 24899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHH-------HHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcc
Q 004860 266 SFAAREI-------ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (727)
Q Consensus 266 ~~~~~~l-------~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (727)
..+.+++ ..+++.++++.+++++...... ..+ ... ......++++...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~-~~~------------------~~~~~~~~~l~~~ 141 (545)
T PRK07768 87 PTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAA------PVL-EEK------------------GIRVLTVADLLAA 141 (545)
T ss_pred CCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhh------hhh-ccc------------------CCceeehhhhccc
Confidence 8886654 4467778999999977432110 000 000 0112334444432
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCC-CEEEEecccccccchHH-hH
Q 004860 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG-DVYCWPTNLGWVMGPVI-LF 416 (727)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~-d~~l~~~~~~~~~~~~~-~~ 416 (727)
... ......++++++++|||||||+||||+++|+++.+.+......+++.++ |++++..|+.|+.++.. ++
T Consensus 142 ~~~-------~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 214 (545)
T PRK07768 142 DPI-------DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLT 214 (545)
T ss_pred CCC-------CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHH
Confidence 111 1223457999999999999999999999999999888877777888876 89999999999999854 56
Q ss_pred HhhhcCcEEEEecCC---CChhhHHHHHHHhCCCEEEechHHHHHHHhcC----CCCCCCccceeEEEeecCCCChhhHH
Q 004860 417 SSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN----CLEGLDWTKIRSFASTGETSNVDDDL 489 (727)
Q Consensus 417 ~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~----~~~~~~l~~Lr~i~~gGe~l~~~~~~ 489 (727)
.++..|+++++.+.. .++..+.++++++++|++..+|.++..+.... .....++++||.+++||+++++...+
T Consensus 215 ~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~ 294 (545)
T PRK07768 215 VPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVE 294 (545)
T ss_pred HHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHH
Confidence 789999999988642 25677889999999999988888877665421 11246788999999999999999888
Q ss_pred HHHhh---CC--CCcccccccccccccccccCCCCC-------------------------CccccccccCCCCceEEEE
Q 004860 490 WLSSK---AW--YNAIIESCGGTELSSAYIQGSLLQ-------------------------PQAFGAFSTATMTAGLVIL 539 (727)
Q Consensus 490 ~~~~~---~~--~~~l~n~YG~TE~~~~~~~~~~~~-------------------------~~~~~~iG~p~~~~~~~vl 539 (727)
++.+. ++ ...+++.||+||++..++...... ....+++|+|++++.++|+
T Consensus 295 ~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~ 374 (545)
T PRK07768 295 DLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVV 374 (545)
T ss_pred HHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEE
Confidence 77653 21 235999999999986543322110 1134579999999999999
Q ss_pred CCCCCcCCCCCCeeeeEEEe-----cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCe
Q 004860 540 DECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDT 614 (727)
Q Consensus 540 d~~~~~~p~G~~giGel~v~-----~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ 614 (727)
|+++++++.|+. |||++. .||++. ..+.. ... +..||+|||+|++++||+++++||+||+
T Consensus 375 ~~~~~~~~~g~~--Gel~v~~~~~~~gy~~~-------~~~~~----~~~--~~g~~~TGDl~~~~~~g~l~~~GR~~d~ 439 (545)
T PRK07768 375 DEDGQVLPPRGV--GVIELRGESVTPGYLTM-------DGFIP----AQD--ADGWLDTGDLGYLTEEGEVVVCGRVKDV 439 (545)
T ss_pred CCCCCCCCCCCE--EEEEEccCcccccccCC-------CCCcc----ccc--CCCeeeccceEEEecCCEEEEEccccce
Confidence 999999999985 999983 344431 11111 111 2339999999999999999999999999
Q ss_pred eecCceeechHHHHHHHhhcCCCceeeEEEeec--CCCCCceEEEEEEEecCCCCCChH---HHHHHHHHHHHhhcCCCc
Q 004860 615 MNLGGIKTSSVEIERVCDQADESILETAAISVS--PAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAIQSKLNPLF 689 (727)
Q Consensus 615 ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~--~~~~~~~~l~a~vv~~~~~~~~~~---~l~~~l~~~l~~~L~~~~ 689 (727)
||++|.+|+|.|||++|. .||+|.+++|++.. +...+ +.+++++..... .+.. ++.+++++.+...+. .
T Consensus 440 i~~~G~~v~~~eiE~~l~-~~~~v~~~~vv~~~~~~~~~~-~~~~~~v~~~~~--~~~~~~~~l~~~~~~~l~~~~~--~ 513 (545)
T PRK07768 440 IIMAGRNIYPTDIERAAA-RVEGVRPGNAVAVRLDAGHSR-EGFAVAVESNAF--EDPAEVRRIRHQVAHEVVAEVG--V 513 (545)
T ss_pred EEECCEecCHHHHHHHHH-hCcccccceEEEEEecCCCCc-eEEEEEEEeccc--ccHHHHHHHHHHHHHHHHHHhC--C
Confidence 999999999999999995 89999998777654 33333 455555544432 2222 334444443333322 5
Q ss_pred ccceEEEcC--CCCCCCCchhhHHHHHHHHh
Q 004860 690 KVSLVKVVP--EFPRTASNKLLRRVLRDQIK 718 (727)
Q Consensus 690 ~P~~i~~v~--~lP~t~~GKvdR~~L~~~~~ 718 (727)
.|..+.+++ .||+|++||++|+.|+++|.
T Consensus 514 ~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 514 RPRNVVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred CccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 677788876 89999999999999999875
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-55 Score=466.24 Aligned_cols=504 Identities=17% Similarity=0.153 Sum_probs=384.9
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
+..+|+.+++-+.......+.+..+||.|..+++..+|..|+++ +++++.|||+.-|++||+++..||...|++.|||.
T Consensus 85 ~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplY 164 (691)
T KOG1256|consen 85 VEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLY 164 (691)
T ss_pred hhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecc
Confidence 47899999998765322357889999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhh-----hCCCcEEEEcCCCCCC-CCCCC----cCcccHHH
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG-----AAPLKAIVLPAIGNDV-GIPLR----EQDLSWKD 334 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~-~~~~~----~~~~~~~~ 334 (727)
..++++.+.++++++.+.+++++++ ..+..+.+ ..+....++...+... ..... ....+|++
T Consensus 165 dTlg~ea~~~Ii~~~e~~iv~vd~~--------~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e 236 (691)
T KOG1256|consen 165 DTLGAEAVHYIINHAEISIVFVDNA--------KKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDE 236 (691)
T ss_pred cCCCHHHHHHHHHhcceeEEEEeCH--------HHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHH
Confidence 9999999999999999999999964 12223332 1333333332222211 11111 23678999
Q ss_pred HhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHh---hch---hcCCCCCCEEEEeccccc
Q 004860 335 FLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWA---HIDLKVGDVYCWPTNLGW 408 (727)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~---~~~---~~~~~~~d~~l~~~~~~~ 408 (727)
+...+... ..... .+..|+|+|.|+|||||||.|||||+||+|++..+.. ... .......|++++++|++|
T Consensus 237 ~~~lG~~~--~~~~~-~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAH 313 (691)
T KOG1256|consen 237 FEELGKKN--QRKPR-VPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAH 313 (691)
T ss_pred HHhhcccc--cCCCC-CCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHH
Confidence 99887642 11122 4668899999999999999999999999999885542 111 112334699999999999
Q ss_pred ccchHHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhc-----------------------C--
Q 004860 409 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT-----------------------N-- 463 (727)
Q Consensus 409 ~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~-----------------------~-- 463 (727)
++....-...+..|+++.+..+ |+..+.+.|++.++|++.++|.+|+.+.+. .
T Consensus 314 i~er~~~~~~~~~G~~IgF~~g--D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~ 391 (691)
T KOG1256|consen 314 IFERVVELYTFYIGAKIGFARG--DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEH 391 (691)
T ss_pred HHHHHHHHhHhhcccEEEEecC--ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9998655566689999999874 556788889999999999999999887532 0
Q ss_pred -CCCCCC-------------------ccceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCcc
Q 004860 464 -CLEGLD-------------------WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523 (727)
Q Consensus 464 -~~~~~~-------------------l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 523 (727)
...... -.++|.+++|++|+++++..+++..+ +++++++||+|||++..+...+... .
T Consensus 392 ~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~~~d~-~ 469 (691)
T KOG1256|consen 392 RLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTLPGDN-V 469 (691)
T ss_pred HhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEeccCCCC-C
Confidence 000001 13789999999999999999888765 6999999999999955554444443 7
Q ss_pred ccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceE
Q 004860 524 FGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII 597 (727)
Q Consensus 524 ~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~ 597 (727)
.+++|.|+|+++++++| ++.+.-+.|.. ||||| ..||+. +++.|++.|..+. |++|||+|
T Consensus 470 lgsvG~p~p~~~vKL~dvpe~ny~a~~~~--GEIcirG~~Vf~GYyK------~p~~T~e~ideDG------WLhTGDiG 535 (691)
T KOG1256|consen 470 LGSVGPPVPGNEVKLVDVPEMNYDADGSK--GEICVRGPNVFMGYYK------DPEKTAEAIDEDG------WLHTGDIG 535 (691)
T ss_pred CCCcCCcccCceEEEechHHhCcCcCCCc--ceEEEecchhceeccC------ChHHHhhhhcccc------ccccccce
Confidence 78999999999999998 45555556654 99998 456655 5668888887543 99999999
Q ss_pred EEecCceEEEEeecCCeeec-CceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCC--------
Q 004860 598 KRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS-------- 668 (727)
Q Consensus 598 ~~~~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~-------- 668 (727)
+|+++|.|.++||.++.+|. .|++|.|..||++.. ..+-|.+.+|.+... +..|+|.|++++....
T Consensus 536 ~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~-~~~~V~qi~V~g~s~----~~~LvaiVvpd~e~~~~~a~~~~~ 610 (691)
T KOG1256|consen 536 EWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYK-RSLPVQQIFVLGDSL----RSFLVAIVVPDPEVLKSWAAKDGV 610 (691)
T ss_pred eECCCccEEEEecccceEEcCCCCccChHHHHHHHh-cCCceEEEEEECCcc----hhcEEEEEecChhhchhhHHHccC
Confidence 99999999999999999997 899999999999985 788898988877432 1689999999763211
Q ss_pred --ChHH------HHHHHHHHH-----HhhcCCCcccceEEEcC------CCCCCCCchhhHHHHHHHHhhhhcc
Q 004860 669 --QPDK------LKMIFSKAI-----QSKLNPLFKVSLVKVVP------EFPRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 669 --~~~~------l~~~l~~~l-----~~~L~~~~~P~~i~~v~------~lP~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
+.++ +++.+.+.+ +..|..+.....|.+.+ .=-+||+-|+.|..|.+.|++++++
T Consensus 611 ~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~ 684 (691)
T KOG1256|consen 611 KGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDE 684 (691)
T ss_pred chhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHH
Confidence 1111 122222222 34566667776676643 2237899999999999999999875
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=428.43 Aligned_cols=492 Identities=18% Similarity=0.178 Sum_probs=373.3
Q ss_pred CccceecHHHHHHHHHHHHHHHHhh-cCCCCE-EEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeE
Q 004860 205 SAVNLMTYKELREQVMLVANALDTM-FSKGDA-IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAK 282 (727)
Q Consensus 205 ~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~-Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~ 282 (727)
+.+..+||.|+.+++.++|+.|.+. ++++++ |+|+++.+.+|+++++||++.+...|.+...+..+.+.+-|++++++
T Consensus 85 g~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~ 164 (678)
T KOG1180|consen 85 GDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETEST 164 (678)
T ss_pred cceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccce
Confidence 4667999999999999999999999 997776 99999999999999999999999999999999999999999999999
Q ss_pred EEEeecccccCCccccchHHHhhhCCCcEEEEcCCC--CC---CCCC----CCcCcccHHHHhcccCCCCCCCCCCCccC
Q 004860 283 GIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIG--ND---VGIP----LREQDLSWKDFLSSVDYHPRPNYYSPVYN 353 (727)
Q Consensus 283 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (727)
.|+|+.... +.+......+.....++..+. .. .... .....++++++++.+.... .++.+.
T Consensus 165 ~i~T~~~LL------~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~----~~~~~P 234 (678)
T KOG1180|consen 165 AIFTDSELL------PKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE----IPPHPP 234 (678)
T ss_pred EEEeCHHHH------HHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC----CCCCCC
Confidence 999998543 333333444444434433332 11 1111 1234567888888776522 233344
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhc-CCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCCC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP 432 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~ 432 (727)
.|+|+|+|||||||||.|||||++|+|+++.+....... .+.+.|+++.++|++|.+-+..=+.++..|+++-..+...
T Consensus 235 ~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~T 314 (678)
T KOG1180|consen 235 KPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLT 314 (678)
T ss_pred CCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcce
Confidence 789999999999999999999999999999888776654 6899999999999999999865568899999886654322
Q ss_pred --Ch-----hhHHHHHHHhCCCEEEechHHHHHHHhc--------------------------CCCCCC-----------
Q 004860 433 --LE-----RSFGKFVQDAGVTVLGTVPSLVKAWRNT--------------------------NCLEGL----------- 468 (727)
Q Consensus 433 --~~-----~~l~~~i~~~~vt~l~~~P~~l~~l~~~--------------------------~~~~~~----------- 468 (727)
|. ..--..+...++|++.++|.++..+.+. ......
T Consensus 315 Ltdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFk 394 (678)
T KOG1180|consen 315 LTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFK 394 (678)
T ss_pred ecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHH
Confidence 11 1122346678999999999999877432 000000
Q ss_pred -----CccceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEEC-CC
Q 004860 469 -----DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-EC 542 (727)
Q Consensus 469 -----~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~ 542 (727)
---+||++++||++|+++..+++.-++ .|++..+||.||++...+...+.+ ...+.+|.|++.++++++| ++
T Consensus 395 KIr~~lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~e~~d-~~~g~vG~pl~c~eiKLvdw~E 472 (678)
T KOG1180|consen 395 KIRALLGGNLRYILSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVLEPED-FSTGRVGAPLPCCEIKLVDWEE 472 (678)
T ss_pred HHHHHhCCceEEEEeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEecChhh-cccccccCCccceEEEEEEhhh
Confidence 013799999999999999988887665 469999999999997666555443 3456899999999999999 33
Q ss_pred CCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeec
Q 004860 543 GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL 617 (727)
Q Consensus 543 ~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~ 617 (727)
|.-.+.+.|--|||++ .+||++ |++.|++.|.. .+|.|||+|||+|+|.+||+|.++.|++|.||.
T Consensus 473 gGY~~~~~PPrGEI~i~G~~vt~gY~k------n~ekT~e~ft~---~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKl 543 (678)
T KOG1180|consen 473 GGYFAKNKPPRGEILIGGPNVTMGYYK------NEEKTKEDFTV---EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKL 543 (678)
T ss_pred cCccCCCCCCCceEEecCCccChhhhC------Chhhhhhhcee---cCCcEEEeccccceecCCCcEEEeechhhhhhh
Confidence 3322222111277777 567776 56688888875 568999999999999999999999999999997
Q ss_pred -CceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCC----------CC-ChHH------HH----H
Q 004860 618 -GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF----------TS-QPDK------LK----M 675 (727)
Q Consensus 618 -~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~----------~~-~~~~------l~----~ 675 (727)
+|+-|+++-||+++. ..|-|...+|.+-. .. ..++++||++++. .. +.++ +. +
T Consensus 544 q~GEYIsL~KvEa~l~-s~p~V~NICvyAd~--~~--s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v~k 618 (678)
T KOG1180|consen 544 QNGEYISLGKVEAALR-SSPYVDNICVYADS--NK--SKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAVLK 618 (678)
T ss_pred cccceeehHHHHHHHh-cCcchhheEEeccc--cc--ceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHHHH
Confidence 899999999999995 99999998887633 22 6899999998642 11 1111 22 2
Q ss_pred HHHHHH-HhhcCCCcccceEEEcCCCCCC-------CCchhhHHHHHHHHhhhhcc
Q 004860 676 IFSKAI-QSKLNPLFKVSLVKVVPEFPRT-------ASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 676 ~l~~~l-~~~L~~~~~P~~i~~v~~lP~t-------~~GKvdR~~L~~~~~~~~~~ 723 (727)
.|.+.- .++|..+.+|..|++.++ |.| ..=|+.|+.+...|.+++++
T Consensus 619 ~L~~~ak~~~L~~iEip~~I~l~~e-~WTPenGlvT~A~KLKRk~I~~~~k~ei~~ 673 (678)
T KOG1180|consen 619 ELIEAAKSQKLERIEIPAKIVLSPE-PWTPENGLVTAALKLKRKEILAAYKKEIDR 673 (678)
T ss_pred HHHHHHHhcccccccccceeEecCC-CcCCCccccHHHHHhhHHHHHHHHHHHHHH
Confidence 222222 578899999999888764 444 44599999999999988875
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-52 Score=425.70 Aligned_cols=495 Identities=21% Similarity=0.214 Sum_probs=385.6
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
||+++||++|+++.+.. +.+||+|++++++++|+.|... ++.||.||++|+|+++++...||.+|+|++...|
T Consensus 86 ~vrr~p~k~aii~~~~~------~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~i 159 (649)
T KOG1179|consen 86 QVRRQPDKPAIIYEGPF------QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAFI 159 (649)
T ss_pred HHHhCCCccEEEEeCCC------ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeeee
Confidence 56899999999998742 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC-cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
+++...+.|.+.|.-++++.+|++.++.. ...++.+.+.. .+.++..... ..+++..++...++.....
T Consensus 160 NtNlR~~~LlHsi~~s~aralv~~~el~~------~~~e~~~~l~~~~i~~~~~~~~----~~~~g~~~L~~~l~~~~~~ 229 (649)
T KOG1179|consen 160 NTNLRGEPLLHSITVSGARALVVGPELLN------ALEEILPLLIKNGIHVFSLGPT----SVPDGIESLLAKLSAAPKH 229 (649)
T ss_pred ccccccchhhhhhhhcCceEEEECHHHHH------HHHhcchhhhhccceEEecCCC----CCCchHHHHHHhhcccccC
Confidence 99999999999999999999999986541 11111111111 1222221111 1112223333333333321
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhc
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLN 421 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~ 421 (727)
+.+ ........-.++++.||||||||.||..+++|.-+..........++++++|+++..+|+.|.++. ..+-+++..
T Consensus 230 ~vp-~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~ 308 (649)
T KOG1179|consen 230 PVP-VSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLH 308 (649)
T ss_pred CCC-cccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhc
Confidence 111 022234455789999999999999999999999888877767778999999999999999999876 678899999
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
|+|+|+-. .++...||+.+.++++|++.-+--+.+.|+..+......-..+|..+--| +.++.++.+.++++-.+|.
T Consensus 309 GaT~Vlrk-KFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNG--LR~diW~~Fv~RFg~~~Ig 385 (649)
T KOG1179|consen 309 GATVVLRK-KFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNG--LRPDIWQQFVKRFGIIKIG 385 (649)
T ss_pred CceEEEec-ccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCC--CCchHHHHHHHHcCCCeEE
Confidence 99999975 67889999999999999999999999999998776655567888776444 7799999999999877899
Q ss_pred ccccccccccccccCCCCCCccccccccC------CCCceEE---------EECCCCC--cCCCCCCeeeeEEE------
Q 004860 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTA------TMTAGLV---------ILDECGV--PYPDDQPCVGEVGL------ 558 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~---------vld~~~~--~~p~G~~giGel~v------ 558 (727)
+.||+||..+...... ...|.+|+- +--.++- |.|++|- +|++|++ |.++-
T Consensus 386 E~YgaTEgn~~~~N~d----~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEp--GlLv~~i~~k~ 459 (649)
T KOG1179|consen 386 EFYGATEGNSNLVNYD----GRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEP--GLLVGKIVQKN 459 (649)
T ss_pred EEeccccCcceeeeec----CccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCC--ceEEEEeccCC
Confidence 9999999886443321 222333321 1111222 2333332 5788888 53321
Q ss_pred ----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhc
Q 004860 559 ----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634 (727)
Q Consensus 559 ----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~ 634 (727)
..||.+ +.+.++.+...|-|.+|+-||.|||+-.+|+.|++||..|..|.+.-.|+||+..|||.+|. .
T Consensus 460 P~~~F~GY~g------~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~-~ 532 (649)
T KOG1179|consen 460 PLRSFLGYAG------PKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLS-A 532 (649)
T ss_pred chhhhccccC------chhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHh-h
Confidence 235554 25577778888889999999999999999999999999999999999999999999999995 8
Q ss_pred CCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHH
Q 004860 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 714 (727)
Q Consensus 635 ~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~ 714 (727)
..++.|+.|.++.-+...+..=.|.|+.++..+.+.+. +-+++++.||+|.+|..+.+.++|++|.+=|..+..|.
T Consensus 533 ~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~----l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~ 608 (649)
T KOG1179|consen 533 LDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEK----LYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQ 608 (649)
T ss_pred hccccceeEEEEecCCccCccceEEEEecCcccchHHH----HHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHH
Confidence 99999999999887655435666777777766655444 44568899999999999999999999999999999998
Q ss_pred HH
Q 004860 715 DQ 716 (727)
Q Consensus 715 ~~ 716 (727)
+.
T Consensus 609 ~e 610 (649)
T KOG1179|consen 609 KE 610 (649)
T ss_pred Hc
Confidence 75
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-53 Score=463.70 Aligned_cols=390 Identities=25% Similarity=0.280 Sum_probs=300.1
Q ss_pred CCCCCCCceEEEE-ecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEee
Q 004860 185 HRRKEDNTVAIVW-REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (727)
Q Consensus 185 ~a~~~pd~~Al~~-~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vp 262 (727)
+|+++||++|+++ .+. ++||+||+++++++|..|+++ +++||+|+|+++|+++++++++||+++|++++|
T Consensus 4 ~a~~~pd~~a~~~~~~~--------~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~ 75 (417)
T PF00501_consen 4 QAQRYPDRIALIDDEGR--------SLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVP 75 (417)
T ss_dssp HHHHSTTSEEEEETTTE--------EEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEE
T ss_pred HHhhCCCceEEEECCCE--------EEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccc
Confidence 4578999999999 555 999999999999999999988 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHh---hhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhc
Q 004860 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL---GAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (727)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~---~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 337 (727)
++|.++.+++.++++.+++++||+ .+.. +... ...+. ..... ....+...... ....+..
T Consensus 76 l~~~~~~~~~~~~l~~~~~~~ii~-~~~~---d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 140 (417)
T PF00501_consen 76 LDPSLSEDELRHILRQSGPKVIIT-SEAV---DSEP-LKKLKSIFKQEDPSSSIIILDRDDLP----------KKEALKS 140 (417)
T ss_dssp EETTSSHHHHHHHHHHHTESEEEE-CHHH---SCHH-HHHHHHHHTTSTTTEEEEEESHSSCT----------TCHHHHH
T ss_pred cccccccccccccccccceeEEEE-eccc---cccc-cccchhhhcccccccccccccccccc----------ccccccc
Confidence 999999999999999999999997 2000 0111 12121 11111 23333211110 0000000
Q ss_pred ccCCCCCCCCCCCcc-CCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhc--hhcCCCCCCEEEEecccccccch-H
Q 004860 338 SVDYHPRPNYYSPVY-NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW--AHIDLKVGDVYCWPTNLGWVMGP-V 413 (727)
Q Consensus 338 ~~~~~~~~~~~~~~~-~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~-~ 413 (727)
.... ...... ..++++++++|||||||.||+|.++|+++++.+.... ..++++ |++++++|++|.+++ .
T Consensus 141 ~~~~-----~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~ 213 (417)
T PF00501_consen 141 ASLS-----DEPQSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLIS 213 (417)
T ss_dssp HHHC-----HCSHSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHH
T ss_pred cccc-----cccccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccc
Confidence 0000 000000 0568999999999999999999999999988877653 223334 699999999999999 8
Q ss_pred HhHHhhhcCcEEEEecCCCC--hhhHHHHHHHhCCCEEEechHHHHHHHhcCCC----CCCCccceeEEEeecCCCChhh
Q 004860 414 ILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL----EGLDWTKIRSFASTGETSNVDD 487 (727)
Q Consensus 414 ~~~~~l~~G~~lv~~~~~~~--~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~----~~~~l~~Lr~i~~gGe~l~~~~ 487 (727)
.++.++..|+++++++.... +..+++.|+++++|++.++|++++.|++.... ...++++||.+++||++++++.
T Consensus 214 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~ 293 (417)
T PF00501_consen 214 ALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDL 293 (417)
T ss_dssp HHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHH
T ss_pred cccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhh
Confidence 89999999999999985432 46789999999999999999999999884322 2357889999999999999999
Q ss_pred HHHHHhhCCCCcccccccccccccccccCC-CCCCccccccccCCCCceEEEECCC-CCcCCCCCCeeeeEEEe-----c
Q 004860 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGS-LLQPQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGLF-----P 560 (727)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~~~~~~~~iG~p~~~~~~~vld~~-~~~~p~G~~giGel~v~-----~ 560 (727)
.+++.+.++..++++.||+||++..++... .......+++|+|+++++++|+|++ ++++|.|+. |||++. .
T Consensus 294 ~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~--Gei~i~~~~~~~ 371 (417)
T PF00501_consen 294 LRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEP--GEIVIRGPNVFS 371 (417)
T ss_dssp HHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSE--EEEEEESTTSBS
T ss_pred ccccccccccccceecccccccceeeeccccccccccccccccccccccccccccccccccccccc--ccccccCCccce
Confidence 999998876668999999999998765432 2222355689999999999999987 999999996 999994 4
Q ss_pred ccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecC
Q 004860 561 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618 (727)
Q Consensus 561 ~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~ 618 (727)
||++ +++.+++.|.+ ++||+|||+|++|+||+++++||.||+||+|
T Consensus 372 gy~~------~~~~~~~~~~~------~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 372 GYYN------DPELTAEAFID------DGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp EETT------BHHHHHHHEET------TSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred eeec------ccccccccccc------ccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 4444 33455566653 2299999999999999999999999999986
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=446.24 Aligned_cols=393 Identities=21% Similarity=0.206 Sum_probs=322.8
Q ss_pred cHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeec
Q 004860 211 TYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 288 (727)
Q Consensus 211 TY~eL~~~a~~lA~~L~~-~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~ 288 (727)
||.||.+.++++|++|.+ . +++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++++
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 899999999999999999 7 99999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCC
Q 004860 289 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 368 (727)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGST 368 (727)
........ .......+.. .+......... .........++++++++||||||
T Consensus 81 ~~~~~~~~----------~~~~~~~~~~--------------~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGTt 132 (408)
T TIGR01733 81 ALASRLAG----------LVLPIILVDP--------------LELAALDDAPA----PPPPDAPSGPDDLAYVIYTSGST 132 (408)
T ss_pred chhhhccc----------cCCceEEech--------------hhhhhcccccc----cccccCCCCCCCcEEEEEcCCCC
Confidence 54321111 1111111110 00000000000 00011113568999999999999
Q ss_pred CCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCCCC--hhhHHHHHHHhCC
Q 004860 369 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGV 446 (727)
Q Consensus 369 G~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~--~~~l~~~i~~~~v 446 (727)
|.||+|.++|+++++........+++.++|++++..|++|..+++.++.++..|+++++.++... +..+.+.++++++
T Consensus 133 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (408)
T TIGR01733 133 GRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPV 212 (408)
T ss_pred CCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCc
Confidence 99999999999999988888888899999999999999999999889999999999999876544 6788899999999
Q ss_pred CEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCC--CCCc--
Q 004860 447 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL--LQPQ-- 522 (727)
Q Consensus 447 t~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~--~~~~-- 522 (727)
|.+.++|++++.|.+... ..+++||.+++||++++++..+++.+.++++.+++.||+||++.+++.... ....
T Consensus 213 t~l~~~p~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~ 289 (408)
T TIGR01733 213 TVLNLTPSLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRE 289 (408)
T ss_pred eEEEeCHHHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCc
Confidence 999999999999988653 567899999999999999999999988876899999999999876542211 1111
Q ss_pred cccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccCC--CceeeeeCc
Q 004860 523 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYK--GMCLRRHGD 595 (727)
Q Consensus 523 ~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~--g~~~yrTGD 595 (727)
...++|+|++++.++|+|+++++++.|+. |||++ ..||++ +++.+...|..+++.. |.+||+|||
T Consensus 290 ~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~~~~~~~~~~~~~~~~~~~~~TGD 361 (408)
T TIGR01733 290 SPVPIGRPLANTRLYVLDDDLRPVPVGVV--GELYIGGPGVARGYLN------RPELTAERFVPDPFAGGDGARLYRTGD 361 (408)
T ss_pred cccccCcccCCceEEEECCCCCCCCCCCc--eEEEecCccccccccC------ChhhhhcceeeCCCCCCCCceEEECCc
Confidence 26789999999999999999999999985 99998 355655 3446666676666533 445999999
Q ss_pred eEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEE
Q 004860 596 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 643 (727)
Q Consensus 596 l~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~v 643 (727)
+|+++++|++++.||.||+|+++|++|+|.|||++|. .||.|.+|+|
T Consensus 362 l~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~-~~~~v~~~~v 408 (408)
T TIGR01733 362 LVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALL-RHPGVREAVV 408 (408)
T ss_pred eEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHh-cCcchhhhcC
Confidence 9999999999999999999999999999999999996 9999999865
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=402.89 Aligned_cols=316 Identities=18% Similarity=0.182 Sum_probs=259.4
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEe--cCC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY--QGS 431 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~--~~~ 431 (727)
.+++++|++|||||||.||||+++|+++.+........+ ...++++...|+.|..++..++.+++.|++++++ ...
T Consensus 33 ~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~~ 110 (358)
T PRK07824 33 IDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSAG 110 (358)
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCCC
Confidence 468999999999999999999999999988777654443 3567888999999999988788999999999884 345
Q ss_pred CChhhHHHHHHHhC--CCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccccccccc
Q 004860 432 PLERSFGKFVQDAG--VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTEL 509 (727)
Q Consensus 432 ~~~~~l~~~i~~~~--vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 509 (727)
.++..+++.+++++ +++...+|+.+..++.... ...+++++|.+++||++++++..+++.+. ++++++.||+||+
T Consensus 111 ~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE~ 187 (358)
T PRK07824 111 FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSET 187 (358)
T ss_pred cCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCcc
Confidence 57889999999998 5667778988887766433 23457899999999999999988877653 6889999999998
Q ss_pred ccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCcccccccccccccccccc
Q 004860 510 SSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM 584 (727)
Q Consensus 510 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~ 584 (727)
+..+. ..|+|+++++++|.| |++++ ..||.+.+. . ..|.
T Consensus 188 ~~~~~-----------~~G~~~~g~~v~i~~-------------Gei~v~g~~~~~gY~~~~~-------~-~~~~---- 231 (358)
T PRK07824 188 SGGCV-----------YDGVPLDGVRVRVED-------------GRIALGGPTLAKGYRNPVD-------P-DPFA---- 231 (358)
T ss_pred CCCcC-----------cCceeCCCCEEEecC-------------CEEEEecCccccccCCCcc-------c-cccc----
Confidence 75321 258999999999843 45544 566765432 1 1121
Q ss_pred CCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecC
Q 004860 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664 (727)
Q Consensus 585 ~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~ 664 (727)
.+| ||+|||+|++ +||+++++||.||+||++|++|+|.|||++|. .||+|.+|+|++.+++..+ +.++++++.+.
T Consensus 232 ~~g--~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~vv~~~~~~~g-~~~~a~v~~~~ 306 (358)
T PRK07824 232 EPG--WFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALA-THPAVADCAVFGLPDDRLG-QRVVAAVVGDG 306 (358)
T ss_pred CCC--ceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEecCCCCCc-eEEEEEEEeCC
Confidence 122 9999999999 89999999999999999999999999999996 9999999999999988888 89999998876
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhh
Q 004860 665 GFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 665 ~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 719 (727)
+...+.+++ ++++++.|++|++|..|+++++||+|++||+||++|++++.+
T Consensus 307 ~~~~~~~~i----~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 307 GPAPTLEAL----RAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred CCCcCHHHH----HHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence 554554444 455778899999999999999999999999999999998864
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=428.29 Aligned_cols=473 Identities=12% Similarity=0.060 Sum_probs=332.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++|+++|+.+... .+.+..+||+|+.++++++|.+|.++ +++||+|+|+++|+++|+++.+||+++|++.||++
T Consensus 437 a~~~pd~~al~~~~~---~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VPly 513 (1452)
T PTZ00297 437 VTRHSTFRCLGQTSE---SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLV 513 (1452)
T ss_pred HHHCCCCeEEEEecc---CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCC
Confidence 468899999974311 12345899999999999999999999 99999999999999999999999999999999997
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCC-CC-CC--CCCcCcccHHHHhcccC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN-DV-GI--PLREQDLSWKDFLSSVD 340 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~--~~~~~~~~~~~~~~~~~ 340 (727)
+ +.+++.+++++++++++|++.... +.+.......-..++++..... .. .. .......+|++++..+.
T Consensus 514 ~--t~~eL~yIL~~S~akvVfv~~~~l------~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~ 585 (1452)
T PTZ00297 514 G--KGSTMRTLIDEHKIKVVFADRNSV------AAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR 585 (1452)
T ss_pred C--CHHHHHHHHHhcCCcEEEEchhHH------HHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHHHHhcCc
Confidence 5 467899999999999999986432 1111111111123444421100 00 00 00112456888887653
Q ss_pred CCCCCCCCCCccCCCCCeEEEEe---CCCCCCCCCeEEecChHHHHHHHhhchhc---CCCCCCEEEEecccccccchHH
Q 004860 341 YHPRPNYYSPVYNPVDAVVNILF---SSGTTGEPKAIPWTQLSSIRCTAEGWAHI---DLKVGDVYCWPTNLGWVMGPVI 414 (727)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~ii~---TSGSTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~d~~l~~~~~~~~~~~~~ 414 (727)
... ........++|++.|+| ||||||.||||++||+|++..+....... ...++|++++++|++|.++...
T Consensus 586 ~~~---~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~ 662 (1452)
T PTZ00297 586 LCP---VPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVF 662 (1452)
T ss_pred ccC---ccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHH
Confidence 211 11122346789999996 99999999999999999998887654322 4567899999999999988766
Q ss_pred hHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcC----CC----------------------CCC
Q 004860 415 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN----CL----------------------EGL 468 (727)
Q Consensus 415 ~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~----~~----------------------~~~ 468 (727)
.+.++..|+++.. .++..+++.|+++++|++.++|.+++.+.... .. .+.
T Consensus 663 ~~~~l~~G~~I~~----~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~ 738 (1452)
T PTZ00297 663 VLGLFAHGSAVAT----VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRR 738 (1452)
T ss_pred HHHHHHcCCEEEe----CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6788999999864 34688999999999999999999998775320 00 000
Q ss_pred Cc----------------cceeEEEeecC--CCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccC
Q 004860 469 DW----------------TKIRSFASTGE--TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA 530 (727)
Q Consensus 469 ~l----------------~~Lr~i~~gGe--~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p 530 (727)
.. .++|.+++||. +++..+. . +++++..||.||+.. ...+. .....|+|
T Consensus 739 ~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~-----~--~i~i~~g~glTE~~~---~~~~~---~~~~~G~P 805 (1452)
T PTZ00297 739 DSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL-----E--HISVCYVPCLREVFF---LPSEG---VFCVDGTP 805 (1452)
T ss_pred CcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh-----C--CceEEEecceEEeee---ecCCC---CcccCCee
Confidence 00 36899999873 4443222 2 467888999999532 22221 11234999
Q ss_pred CCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEee
Q 004860 531 TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 610 (727)
Q Consensus 531 ~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR 610 (727)
+|+++++|.|....-...+ .||+++. |.+ +++.|++.+ +.|++||+|.++||
T Consensus 806 lpgvEvKI~~~~E~~~~~~---~GEIlvr--~~k------dpe~T~e~~-----------------~gW~~dG~L~IidR 857 (1452)
T PTZ00297 806 APSLQVDLEPFDEPSDGAG---IGQLVLA--KKG------EPRRTLPIA-----------------AQWKRDRTLRLLGP 857 (1452)
T ss_pred cCceEEEEcccccccCCCC---CCeEEEE--ECC------ChHHHHHhh-----------------CcCccCCeEEEEec
Confidence 9999999987421111112 3999883 333 223333211 34568999999999
Q ss_pred cCCeeec-CceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCC-----------C--------CCh
Q 004860 611 ADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF-----------T--------SQP 670 (727)
Q Consensus 611 ~dd~ik~-~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~-----------~--------~~~ 670 (727)
++|.||. +|++|.|+.||+.+. ++|.|.+++|++... ..++|.|+++... . .+.
T Consensus 858 kKdlikls~GEyVaP~~IE~~l~-~sp~I~qi~V~Gd~~-----k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~ 931 (1452)
T PTZ00297 858 PLGILLPVAYEYVIAAELERIFS-QSRYVNDIFLYADPS-----RPIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGW 931 (1452)
T ss_pred cccceECCCCcEEcHHHHHHHHh-cCCCccEEEEEecCC-----CceEEEEEeCHHHHHHHHHHHcCCCccccccccCCH
Confidence 9999996 899999999999995 899999999998532 4599999886311 0 122
Q ss_pred HHHHH----HHHHH---HH--hhcCCCcccceEEEcC-CC-----CCCCCchhhHHHHHHHHhhhhcc
Q 004860 671 DKLKM----IFSKA---IQ--SKLNPLFKVSLVKVVP-EF-----PRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 671 ~~l~~----~l~~~---l~--~~L~~~~~P~~i~~v~-~l-----P~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
+++.+ .+.+. +. ..+..+.+++.|.+++ ++ -+||+.|+.|+.+.+.|++++++
T Consensus 932 ~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~ 999 (1452)
T PTZ00297 932 TELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIER 999 (1452)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHH
Confidence 33322 12222 22 2366778888777764 45 48999999999999999998875
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=360.82 Aligned_cols=289 Identities=13% Similarity=0.110 Sum_probs=227.6
Q ss_pred CCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCC--CCEEEEecccccccch-HHhHHhhhcCcEEEEecCCC
Q 004860 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV--GDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSP 432 (727)
Q Consensus 356 ~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~--~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~ 432 (727)
++.++++|||||||.||||+++|+++.+.+.+....+++.. .|++++..|++|..+. +.++.++..|+++++.+ ..
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~-~~ 173 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLA-AA 173 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecC-CC
Confidence 45789999999999999999999999988877766677644 4689999999998776 66788999999999876 35
Q ss_pred ChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccc
Q 004860 433 LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA 512 (727)
Q Consensus 433 ~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 512 (727)
++..+++.++. .|++.++|++++.|.+.. .++++++. ++||+++++++.+.+.+. +..++++.||+||++++
T Consensus 174 ~~~~~l~~i~~--~t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i 245 (386)
T TIGR02372 174 PASGIMRHARP--GDLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGI 245 (386)
T ss_pred ChHHHHHhhcc--CCEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheecccccccc
Confidence 56677777654 389999999999998652 34677886 688999999998888764 33469999999999864
Q ss_pred cccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccccCCCceeee
Q 004860 513 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRR 592 (727)
Q Consensus 513 ~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yr 592 (727)
..... ....|+|+|+.++.+ | ++. + .| | ..|++
T Consensus 246 ~~~~~------~~~~~~~~p~~~~~~-~-~~~----------~----~g---------------------~----~~~~~ 278 (386)
T TIGR02372 246 GLREA------PDDPFRLLPDLACFA-D-TLS----------S----AG---------------------L----ARRLD 278 (386)
T ss_pred ccccC------CCCCcccCCCccccC-C-Ccc----------C----CC---------------------c----cceee
Confidence 33221 122356666654432 1 110 0 00 0 01689
Q ss_pred eCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHH
Q 004860 593 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK 672 (727)
Q Consensus 593 TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~ 672 (727)
|||+++|+++|+++|+||+||+||++|++|+|.|||++|. .||+|.+|+|.. .+ ++++++|+++++. +.+.
T Consensus 279 tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~-~~p~V~~~~v~~-----~g-~~~~a~vv~~~~~--~~~~ 349 (386)
T TIGR02372 279 LQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILE-RNPRVRAAAVRL-----DG-RRLKAFIVVAEDA--DEAE 349 (386)
T ss_pred cCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHH-cCCCceEEEEEc-----CC-ceEEEEEEECCCC--ChHH
Confidence 9999999999999999999999999999999999999995 999999998752 34 7899999988643 2244
Q ss_pred HHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhh
Q 004860 673 LKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 709 (727)
Q Consensus 673 l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvd 709 (727)
+.+.+++.++++|++|++|..+.++++||+|++||++
T Consensus 350 ~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 350 LEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 5567777888999999999999999999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=361.64 Aligned_cols=489 Identities=16% Similarity=0.124 Sum_probs=329.8
Q ss_pred CCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCC
Q 004860 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (727)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~ 266 (727)
..|...+..+-......+....+||++....++.+++.|... ...|+.|++++..+.++++.+++++++|.+++++||+
T Consensus 48 ~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~ 127 (1032)
T KOG1178|consen 48 EAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPS 127 (1032)
T ss_pred hcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCC
Confidence 444555444432222235566999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CC----HHHHHH---HHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhccc
Q 004860 267 FA----AREIAT---RLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (727)
Q Consensus 267 ~~----~~~l~~---~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (727)
+| ++++.. .+......++ +.++.......... .........-.+..+....
T Consensus 128 ~~~~e~~~~~~~ia~~~~s~~~~i~----------~~l~i~~~~~~~~~------------~~~sv~~~~~~f~~~~~~~ 185 (1032)
T KOG1178|consen 128 WPNSELAGYLMRIAHFLTSVELEIV----------RRLNIIDILLNSLF------------PKLSVETIADSFQMVLHNE 185 (1032)
T ss_pred CcccccchHHHhhhhhheeccceeh----------hhhhhHHHHhhccc------------cccchhhccchhhhhhccC
Confidence 99 332211 1111111111 11111111111110 0000000001111111111
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhh
Q 004860 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419 (727)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l 419 (727)
........-+++.+++.||||+||.||||.-+|..+.+...|....+..+..+++-......++-.....+.++
T Consensus 186 ------~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~~~~~~ 259 (1032)
T KOG1178|consen 186 ------DTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQKFIGAL 259 (1032)
T ss_pred ------CCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHHHHhhH
Confidence 11222334567899999999999999999999999999999999999999999886666676777776665665
Q ss_pred hcCcEEEEecCCC---ChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCC-------------CCCccceeEEEeecCCC
Q 004860 420 LNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE-------------GLDWTKIRSFASTGETS 483 (727)
Q Consensus 420 ~~G~~lv~~~~~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~-------------~~~l~~Lr~i~~gGe~l 483 (727)
+..+..++++-.. .+..+.+++++++++..+.+|++.++++...... ....+.|+....+||+.
T Consensus 260 L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~ 339 (1032)
T KOG1178|consen 260 LFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPL 339 (1032)
T ss_pred hhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCcc
Confidence 5555544544322 2678999999999999999999988887653221 11234799999999998
Q ss_pred ChhhHHHHHhhCCCCcccccccccccccccccCCCCC------Cc-------cccccccCCCCceEEEECCCCCcCCCCC
Q 004860 484 NVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ------PQ-------AFGAFSTATMTAGLVILDECGVPYPDDQ 550 (727)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~------~~-------~~~~iG~p~~~~~~~vld~~~~~~p~G~ 550 (727)
...+.......+.-.-...-|++|+.....+...... .. ....+|. .+.+.++...+.+.+.++
T Consensus 340 ~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~---~~~~~~~~~~~~~~~~~v 416 (1032)
T KOG1178|consen 340 LVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGS---LTVLESLYRAGGEGEGGV 416 (1032)
T ss_pred chhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCC---CcceeeeeccCcccCCcc
Confidence 8777653333322122334488777765433211100 00 0001111 133445555566665554
Q ss_pred CeeeeEEEecccCCCCccccccccccccccccc-cC--CCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHH
Q 004860 551 PCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP-MY--KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (727)
Q Consensus 551 ~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p-~~--~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (727)
|..+++.++....-.. ....+...|.++. +. ...|+|||||+|+..++|.+.+.||.|+|||+||+||+++||
T Consensus 417 ---~~~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei 492 (1032)
T KOG1178|consen 417 ---GKGCLGAEQNLSSWVV-DGYSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGEL 492 (1032)
T ss_pred ---cceeecccccccceee-ccccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhh
Confidence 4444433333211100 0001222222222 12 236799999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCch
Q 004860 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK 707 (727)
Q Consensus 628 E~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GK 707 (727)
++++. .||.|.++.+....+...+ +.+++||+...+... .+...|+++++++|++||+|+.++.++++|+|+|||
T Consensus 493 ~t~v~-~~p~v~~~itl~~~~~~~~-~~l~aFvv~~~~~~~---~~~~~i~~~l~~~La~y~vPs~~V~l~~vPl~~~GK 567 (1032)
T KOG1178|consen 493 NTVVE-VHPDVKEAITLARENSTVG-QTLLAFVVERGGSKS---VLIRDIRNYLKKELASYMLPSLVVPLAKVPLNPNGK 567 (1032)
T ss_pred chhhc-cCcchhhhheeeeeccccC-ceEEEEEeccCCCCc---hhHHHHHHhhcccccceecceEEEEhhhCCcCCCCC
Confidence 99996 8899999999999998887 999999998865443 336678889999999999999999999999999999
Q ss_pred hhHHHHHHH
Q 004860 708 LLRRVLRDQ 716 (727)
Q Consensus 708 vdR~~L~~~ 716 (727)
||+++|.+.
T Consensus 568 vDkkaL~~~ 576 (1032)
T KOG1178|consen 568 VDKKALLEY 576 (1032)
T ss_pred cChhhhhhh
Confidence 999999983
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=331.34 Aligned_cols=326 Identities=18% Similarity=0.169 Sum_probs=238.8
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHHHH---hhchhcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEEEec
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQ 429 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~~ 429 (727)
+++++++++|||||||.||+|+++|.++..... .....+++.++|++++..++++..+. ...+.++..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 557889999999999999999999998765432 22344688999999887766654433 33566788899988765
Q ss_pred CCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCC--CccceeEEEeecCCCChhhHHHHHhhCCCCccccccccc
Q 004860 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (727)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (727)
. .+++.+++.|+++++|++.++|+++..|++....... ...+||.+++|||+++++..+++.+.+ +++++|.||+|
T Consensus 153 ~-~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~t 230 (422)
T TIGR02155 153 G-GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLS 230 (422)
T ss_pred C-CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccch
Confidence 4 3468899999999999999999999988764322222 235899999999999999988887776 58999999999
Q ss_pred ccccccccCCCCCCccccccccCC--CCceEEEEC-CCCCcCCCCCCeeeeEEEecccCCCCcccccccccccccccccc
Q 004860 508 ELSSAYIQGSLLQPQAFGAFSTAT--MTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM 584 (727)
Q Consensus 508 E~~~~~~~~~~~~~~~~~~iG~p~--~~~~~~vld-~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p~ 584 (727)
|+++......... . ..|.++ ++..+.|+| ++|+++|+|+. |||+++... +..| |.
T Consensus 231 E~~~~~~~~~~~~-~---~~g~~~~~~~~~~eivd~~~g~~v~~Ge~--Gelvvt~~~-------------~~~~---p~ 288 (422)
T TIGR02155 231 EVIGPGVAMECVE-T---QDGLHIWEDHFYPEIIDPHTGEVLPDGEE--GELVFTTLT-------------KEAL---PV 288 (422)
T ss_pred hhcCCceeecccc-c---CCCceEecCeeEEEEECCCCCCCCCCCCe--eEEEEecCC-------------cccc---ce
Confidence 9852111111100 0 123333 356678999 58999999996 999986321 1122 21
Q ss_pred CCCceeeeeCceEEEecC-c-----eEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEE
Q 004860 585 YKGMCLRRHGDIIKRTVG-G-----YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (727)
Q Consensus 585 ~~g~~~yrTGDl~~~~~d-G-----~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a 658 (727)
.||+|||+++++++ | .+++.||.||+||++|.+|+|.|||++|. .||+|...+.+.+...... +.+++
T Consensus 289 ----~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~-~~~~v~~~~q~~~~~~~~~-~~~~~ 362 (422)
T TIGR02155 289 ----IRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVIL-KMDELSPHYQLELTRNGHM-DELTL 362 (422)
T ss_pred ----eeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHH-hCcCcCCCEEEEEEcCCCc-cEEEE
Confidence 28999999999876 4 46899999999999999999999999995 8999985555555544433 57888
Q ss_pred EEEecCCCC-----CChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHH
Q 004860 659 FVVLKKGFT-----SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 711 (727)
Q Consensus 659 ~vv~~~~~~-----~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~ 711 (727)
.|+..++.. .+.+.+.+.|++.+++.+..+.. -.|+.+++||+|+ ||+.|.
T Consensus 363 ~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 363 KVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSMD-VHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred EEEEecCcccccchHHHHHHHHHHHHHHHhccCcEEE-EEEECCCCccCCC-CCceEE
Confidence 888765432 12244567788888888876532 2333447999988 999763
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=272.04 Aligned_cols=328 Identities=15% Similarity=0.088 Sum_probs=219.4
Q ss_pred CCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch---hcCCCCCCEEEEecccccccchHH-hHHhhhcCcEEEEe
Q 004860 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALY 428 (727)
Q Consensus 353 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~~G~~lv~~ 428 (727)
.+.++++.+.|||||||+||+|.+||+++......... ..+++++|+++...+++++.+.+. .++++..|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 35678999999999999999999999998765544332 358999999999999888777644 35567788876543
Q ss_pred cCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCC--CccceeEEEeecCCCChhhHHHHHhhCCCCcccccccc
Q 004860 429 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 506 (727)
Q Consensus 429 ~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 506 (727)
. . ....+++|+++++|++.++|+.+..|.+....... ..++||.+++|||+++++..+++.+.+ +++++|.||+
T Consensus 163 ~-~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~ 238 (445)
T TIGR03335 163 G-K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGS 238 (445)
T ss_pred C-c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCCh
Confidence 2 2 23568899999999999999988777653222221 246899999999999999888877665 6899999999
Q ss_pred cccccccccCCCCCCccccccccCCCCceEEEECCC-CCcCCCCCCeeeeEEEecccCCCCccccccccccccccccccC
Q 004860 507 TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMY 585 (727)
Q Consensus 507 TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~-~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p~~ 585 (727)
||++.. ..+.. ......+.+...+.|+|++ +.++|+|+. |||+++..+-.. .-...|..
T Consensus 239 TE~~~~-~~c~~-----~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~--GELvvT~L~~~~------------~r~~~Pli 298 (445)
T TIGR03335 239 TEGTMC-GECQA-----VAGLHVPEDLVHLDVYDPRHQRFLPDGEC--GRIVLTTLLKPG------------ERCGSLLI 298 (445)
T ss_pred hhhhhe-EEecC-----CCCccccCCceEEEEEcCCCCCCCcCCCc--eEEEEEecCCCC------------ccCCceEE
Confidence 998632 21111 1112233445789999976 567899996 999996543210 00012322
Q ss_pred CCceeeeeCceEEEec-C----c----eEEEEeecCCeeecCceeechHHHHHHHhhcC---CCceeeE-EEeecCCCCC
Q 004860 586 KGMCLRRHGDIIKRTV-G----G----YIIVQGRADDTMNLGGIKTSSVEIERVCDQAD---ESILETA-AISVSPAGGG 652 (727)
Q Consensus 586 ~g~~~yrTGDl~~~~~-d----G----~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~---p~V~~a~-vv~~~~~~~~ 652 (727)
-|+|||++++.. + | .+...||.||+++++|.+|+|.+||++|. ++ +++.... ++...+. .+
T Consensus 299 ----RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~-~~~~~~~~~~~~~~~~~~~~-~~ 372 (445)
T TIGR03335 299 ----NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVF-QRENMDSLTGEYEAFLYGEE-EG 372 (445)
T ss_pred ----EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHh-ccCCCCCCCccEEEEEecCC-CC
Confidence 289999999742 2 2 14457999999999999999999999996 74 5554333 3332222 22
Q ss_pred ceEEEEEEEecCCCCCChHHHHHHHHHH----H---HhhcCCCcccceEEEc--CCCCCCC-CchhhH
Q 004860 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKA----I---QSKLNPLFKVSLVKVV--PEFPRTA-SNKLLR 710 (727)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~----l---~~~L~~~~~P~~i~~v--~~lP~t~-~GKvdR 710 (727)
...+..-|...++...+.+++.+.+.+. + +..+....+...+.++ ..||+++ .||..|
T Consensus 373 ~~~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 373 EITLRVSLECEDKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred CceEEEEEEecCcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence 2356566666554333445555555444 1 1111112222334444 4799984 688755
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-26 Score=247.71 Aligned_cols=508 Identities=15% Similarity=0.149 Sum_probs=333.4
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEee
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vp 262 (727)
.++++||.+|+..-+.. +....++||+++..+|.++|.+|... +++||.|+++.++++|++++++||+.+|.+++|
T Consensus 779 R~a~tp~~~a~~~~n~~--~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIp 856 (1363)
T KOG3628|consen 779 RAAKTPDHIAFTTLNAR--GATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIP 856 (1363)
T ss_pred HhhcCCCceEEEEeccC--CcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCeeeec
Confidence 35799999999987653 34557999999999999999999988 999999999999999999999999999999999
Q ss_pred cCCCCC------HHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHh
Q 004860 263 IADSFA------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL 336 (727)
Q Consensus 263 l~p~~~------~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 336 (727)
+.|... -..+..+++..+++.|+++.......+.......+...+-+.+.+.+... .+|..-.
T Consensus 857 v~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~-----------~t~~k~~ 925 (1363)
T KOG3628|consen 857 VPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLP-----------ETIRKRK 925 (1363)
T ss_pred cCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccc-----------hhhhhhh
Confidence 988543 34688899999999999998644322222222222222212222221111 0121111
Q ss_pred cccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHh
Q 004860 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VIL 415 (727)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~ 415 (727)
..... .....++-...++.+||+-+.--++|.--||..+|.++++.++.....+.+.+..-++..+++.-..|+ ...
T Consensus 926 ~~~~k--~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wc 1003 (1363)
T KOG3628|consen 926 KNIKK--LNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWC 1003 (1363)
T ss_pred hhhhc--cCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHH
Confidence 11111 111122233456889999998889999999999999999999999888888887777776666655555 335
Q ss_pred HHhhhcCcEEEEecC---CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccce------eEEEeecCCCChh
Q 004860 416 FSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI------RSFASTGETSNVD 486 (727)
Q Consensus 416 ~~~l~~G~~lv~~~~---~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~L------r~i~~gGe~l~~~ 486 (727)
+...++|...++.++ ..++..|++.|++++|.-++.+-+.+..+......+..+++.. ..++..-|+....
T Consensus 1004 LlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~a 1083 (1363)
T KOG3628|consen 1004 LLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIA 1083 (1363)
T ss_pred HHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHH
Confidence 667778888777654 3367889999999999999998888888766533222222211 2333334443333
Q ss_pred hHHHHHhhCC----CC-ccc-------------ccccccccccccccCCCCCCccc-------------cccccCCCCce
Q 004860 487 DDLWLSSKAW----YN-AII-------------ESCGGTELSSAYIQGSLLQPQAF-------------GAFSTATMTAG 535 (727)
Q Consensus 487 ~~~~~~~~~~----~~-~l~-------------n~YG~TE~~~~~~~~~~~~~~~~-------------~~iG~p~~~~~ 535 (727)
...-+.+.+. .+ .+- +.|..-|=+..+.-......... -..|.-.++++
T Consensus 1084 li~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~ 1163 (1363)
T KOG3628|consen 1084 LIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTD 1163 (1363)
T ss_pred HHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccce
Confidence 3332322210 00 111 22222221111110000000000 11367778899
Q ss_pred EEEECCC-CCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEec------C-
Q 004860 536 LVILDEC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV------G- 602 (727)
Q Consensus 536 ~~vld~~-~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~------d- 602 (727)
+.|++++ ..||.+|+ +||||+ +.+|++..+. ++.+...++.. .....+..|-||||+|.... +
T Consensus 1164 i~IvnPEtk~pc~dge--~GEIW~~S~hnA~~~~~~~d~-~~~~~fn~rl~-~g~~~~~sy~RTG~LGFl~~t~~t~~~~ 1239 (1363)
T KOG3628|consen 1164 IAIVNPETKGPCRDGE--LGEIWVNSAHNASCSFTIGDE-LRSNHFNARLS-SGDLLGKSYARTGDLGFLRRTSLTDANV 1239 (1363)
T ss_pred eEEeCCccccccccCC--cceEEeccccccccccccCch-hhhhhhhhhcc-ccccccccceeeeeeeeeeeeecccccc
Confidence 9999954 66888887 599999 3445443221 22222222222 22234667999999999742 2
Q ss_pred ---ceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHH
Q 004860 603 ---GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK 679 (727)
Q Consensus 603 ---G~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~ 679 (727)
.-||++|-.++.+-++|.|.+|.+||..+.+.||.|.+|+|+-.. ..+|..+.+.. +....+|.-.|.
T Consensus 1240 e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~------glvVvviE~~g--q~~~~~LvPlIv- 1310 (1363)
T KOG3628|consen 1240 ERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQAT------GLVVVVIECHG--QQELADLVPLIV- 1310 (1363)
T ss_pred eeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeC------CeEEEEEEecC--chhHhhhhHHHH-
Confidence 358999999999999999999999999999899999999988642 46777777664 333344444443
Q ss_pred HHHhhcCCCccc-ceEEEcC--CCCCCCCchhhHHHHHHHH-hhhhc
Q 004860 680 AIQSKLNPLFKV-SLVKVVP--EFPRTASNKLLRRVLRDQI-KHELS 722 (727)
Q Consensus 680 ~l~~~L~~~~~P-~~i~~v~--~lP~t~~GKvdR~~L~~~~-~~~~~ 722 (727)
...|..+.+. ..+.+++ .+|+++.|-.+|..+.+.+ .++++
T Consensus 1311 --~~vL~eH~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~~kL~ 1355 (1363)
T KOG3628|consen 1311 --NVVLEEHYIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLAGKLD 1355 (1363)
T ss_pred --HHHHhhcceEEEEEEEecCCccccCCchhhHHHHHHHHHHhcccc
Confidence 3445555665 6677776 5999999999999988876 44443
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=212.32 Aligned_cols=217 Identities=16% Similarity=0.114 Sum_probs=159.5
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
++.+|+++|+++.+.. .+...++||+||.++++++|+.|++ . +++||+|+|+++|+++++++++||+++|++++|+
T Consensus 6 ~~~~p~~~al~~~~~~--~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~ 83 (227)
T TIGR03089 6 LAADPASPRLTFYDDA--TGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLA 83 (227)
T ss_pred hhhCCCCcEEEEEcCC--CCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeC
Confidence 4678999999864321 0122479999999999999999998 8 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCC--CCCCCCCCCcCcccHHHHhcccCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAI--GNDVGIPLREQDLSWKDFLSSVDY 341 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 341 (727)
+ ++++++++++++...... .+..++.+... ..........+..+|.+.+.....
T Consensus 84 n-------------~s~a~~~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (227)
T TIGR03089 84 G-------------DPDADVVVTGPDRLAAAA-----------GSGEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGD 139 (227)
T ss_pred C-------------CCCCCEEEeCcchhhhcc-----------cCCceEEEeccccccCCCCCCCCcccchhhhhhccCC
Confidence 4 889999999886542211 11233333211 000000112233456655543221
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhh
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~ 420 (727)
...+.....++|++.|+||||+ +|++++... ...+++++|+++ .+|++|..++ ..++.+|.
T Consensus 140 ----~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~ 201 (227)
T TIGR03089 140 ----QFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLA 201 (227)
T ss_pred ----CCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhc
Confidence 0111113456899999999985 666655544 456789999999 9999999998 56889999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHhCCC
Q 004860 421 NGATLALYQGSPLERSFGKFVQDAGVT 447 (727)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt 447 (727)
.|+++++.+ .+++..+++.|+++|||
T Consensus 202 ~G~t~v~~~-rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 202 AGGSLVLVT-HPDPARLDQIAETERVT 227 (227)
T ss_pred cCceEEEec-CCCHHHHHHHHHhhcCC
Confidence 999999996 78999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=213.54 Aligned_cols=324 Identities=23% Similarity=0.200 Sum_probs=226.4
Q ss_pred cCCCCCeEEEEeCCCCCCCCCeEEecChHHHH---HHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEEE
Q 004860 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLAL 427 (727)
Q Consensus 352 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~ 427 (727)
..+-++...|--||||||+|+-+..++..+-. .+.......+...+|++.....++...+- ...+++--.|++++-
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip 165 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP 165 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence 34456677788999999999999999987543 33344445688999998877766644433 445566666666543
Q ss_pred ecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCC--CCccceeEEEeecCCCChhhHHHHHhhCCCCccccccc
Q 004860 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (727)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~--~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (727)
.. ...-..-+++|+.+++|++.++|+.+..|.+...... .+-.+|+.+++|+|+++++.+..+..++ +++.++.||
T Consensus 166 ~~-~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYG 243 (438)
T COG1541 166 IS-GGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYG 243 (438)
T ss_pred cC-CccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeeccc
Confidence 33 2355778899999999999999999999987654442 3345899999999999999999888876 788999999
Q ss_pred cccccccc-ccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccc
Q 004860 506 GTELSSAY-IQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (727)
Q Consensus 506 ~TE~~~~~-~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p 583 (727)
.||..++- ..+.... -....-++.-+.|+| +.|+++|+|+. |||+++..--. ..|
T Consensus 244 ltE~~g~g~~eC~~~~-----glhi~eD~~~~Ei~dP~t~e~l~dge~--GelV~T~L~~~----------------~~P 300 (438)
T COG1541 244 LTEGFGPGAGECTERN-----GLHIWEDHFIFEIVDPETGEQLPDGER--GELVITTLTKE----------------GMP 300 (438)
T ss_pred cccccCCccccccccc-----CCCcchhhceeeeecCCcCccCCCCCe--eEEEEEecccc----------------Ccc
Confidence 99997652 2221111 112345567889999 67999999996 99998542211 123
Q ss_pred cCCCceeeeeCceEEEecC----ce-----EEEEeecCCeeecCceeechHHHHHHHhhcCCCce-eeEEEeecCCCCCc
Q 004860 584 MYKGMCLRRHGDIIKRTVG----GY-----IIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-ETAAISVSPAGGGP 653 (727)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~d----G~-----l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~-~a~vv~~~~~~~~~ 653 (727)
.. -|+|||+++..++ |+ ..+.||.||+++++|.+|+|..||.+|. +.+.+. +-.++... ....
T Consensus 301 lI----RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~-~~~~~~~~yqi~~~~-~~~~- 373 (438)
T COG1541 301 LI----RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLL-QIPEVTPHYQIILTR-NGGL- 373 (438)
T ss_pred eE----EEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHh-cccCCCceEEEEEec-CCCC-
Confidence 32 2999999999774 22 3589999999999999999999999997 899988 44455444 3233
Q ss_pred eEEEEEEEecCCCCCC--hHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhh
Q 004860 654 EVLVIFVVLKKGFTSQ--PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 709 (727)
Q Consensus 654 ~~l~a~vv~~~~~~~~--~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvd 709 (727)
..+.+-|+++++.... ...+...+...+...+.- .+--.++.+.++|+|.. |..
T Consensus 374 d~L~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~v~~v~~g~l~r~~~-K~k 429 (438)
T COG1541 374 DELTVRVELENEAEELEDERRLAKKLIKNIKSELGV-RVEVELVEPGELPRTEG-KAK 429 (438)
T ss_pred ceEEEEEEecCcccchHHHHHHHHHHHHHHHhhcCC-ceEEEEEeccceecccC-cee
Confidence 6788888887642111 122224555555554431 11134555679999875 643
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-21 Score=202.24 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=104.2
Q ss_pred eeeeeCceEEE-ecCceEEEEeecCCeeecCc---eeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecC
Q 004860 589 CLRRHGDIIKR-TVGGYIIVQGRADDTMNLGG---IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664 (727)
Q Consensus 589 ~~yrTGDl~~~-~~dG~l~~~GR~dd~ik~~G---~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~ 664 (727)
.||+|||+|++ |+||+++|.||.| +| ++|+|. ||++|. +||+|.+|+|++++++.+| +.++|||++..
T Consensus 209 gW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~-~hp~V~eaaVvgvpd~~~g-e~v~A~Vv~~~ 280 (365)
T PRK09188 209 IWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALK-SDPAVSDVAIALFSLPAKG-VGLYAFVEAEL 280 (365)
T ss_pred cEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHH-hCCCccEEEEEEEEcCCCC-eEEEEEEEECC
Confidence 39999999998 6999999999998 88 799999 999995 9999999999999999888 99999999864
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhh
Q 004860 665 GFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721 (727)
Q Consensus 665 ~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 721 (727)
..+.+++++ .++++|++ ++|..|+++++||+|+||||+|+.|++++.+..
T Consensus 281 --~~~~~el~~----~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~~ 330 (365)
T PRK09188 281 --PADEKSLRA----RLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQI 330 (365)
T ss_pred --CCCHHHHHH----HHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhccc
Confidence 345455555 57778899 999999999999999999999999999875443
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-16 Score=167.04 Aligned_cols=258 Identities=17% Similarity=0.095 Sum_probs=163.2
Q ss_pred eEEEEeCCCCCCCCCeEEecChHHHHHHH---hhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcE-EEEecCCCC
Q 004860 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTA---EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT-LALYQGSPL 433 (727)
Q Consensus 358 ~a~ii~TSGSTG~PKgV~~th~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~-lv~~~~~~~ 433 (727)
-..+..||||||.|-.+.++......... ......++..++++..+. +..+ .++..+.+... +-.++-..+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~---~~~~--~ly~~~~~~~~~~~~~~l~~~ 175 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFL---RADN--NLYQSVNNRWISLDFFDLLAP 175 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEE---ccCh--hHHHHHHhccceeeecCCCcC
Confidence 35677899999999999999876432221 112223566777766542 1111 22233322221 233333345
Q ss_pred hhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccccccccccccc
Q 004860 434 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY 513 (727)
Q Consensus 434 ~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 513 (727)
.+..++.|++++++++.++|+.+..|++.......+ .+++.++++||.+++...+.+.+.+ ++++++.||+|| +...
T Consensus 176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~la 252 (430)
T TIGR02304 176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GFLA 252 (430)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hheE
Confidence 678899999999999999999999998864333333 4789999999999998887777776 689999999999 4433
Q ss_pred ccCCCCCCccccccccCCCCceEE--EECCCCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccccCCCceee
Q 004860 514 IQGSLLQPQAFGAFSTATMTAGLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR 591 (727)
Q Consensus 514 ~~~~~~~~~~~~~iG~p~~~~~~~--vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~y 591 (727)
..+.. +....--...-++ ++|++++++ .+|+.-+ +. ..|.. -|
T Consensus 253 ~eC~~------g~lHl~ed~~~vE~~ivD~~~~~~---------~ViT~L~-n~---------------~~PlI----RY 297 (430)
T TIGR02304 253 STCRC------GTLHLNEDLVHIEKQYLDEHKRFV---------PIITDFT-RT---------------TQPIV----RY 297 (430)
T ss_pred EecCC------CCEEEccccEEEEeeEECCCCceE---------EEEecCC-Cc---------------cceEE----ee
Confidence 22211 1111111223344 788766433 2332221 10 13332 29
Q ss_pred eeCceEEEecC----ce----E-EEEeecCCeeec---Cc--eeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 592 RHGDIIKRTVG----GY----I-IVQGRADDTMNL---GG--IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 592 rTGDl~~~~~d----G~----l-~~~GR~dd~ik~---~G--~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
+|||++++.++ |. | .+.||.||++++ +| ..|.|..|+.++....++|.+..++... . ..+.
T Consensus 298 rtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~---~--~~l~ 372 (430)
T TIGR02304 298 RLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTG---S--AQLE 372 (430)
T ss_pred eCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEcc---C--CeEE
Confidence 99999998554 32 3 378999999985 34 4569999998865467889888776422 2 4566
Q ss_pred EEEEec
Q 004860 658 IFVVLK 663 (727)
Q Consensus 658 a~vv~~ 663 (727)
..+++.
T Consensus 373 v~~~~~ 378 (430)
T TIGR02304 373 LIADCE 378 (430)
T ss_pred EEEEeC
Confidence 666653
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-13 Score=149.55 Aligned_cols=485 Identities=14% Similarity=0.113 Sum_probs=286.2
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHH-HHHhh-cCCCCEEEEEcCCC--HHHHHHHHHHHHhCCEEee
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN-ALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVS 262 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~-~L~~~-v~~gd~Vai~~~~s--~~~vva~lA~~kaGa~~vp 262 (727)
..++..+|.++-+.. +....+||..+..++.+.|+ .|.+- ..++|+|.++...+ .++++++++|.-.|.+.+|
T Consensus 105 nhs~~~ta~i~id~k---gk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp 181 (1363)
T KOG3628|consen 105 NHSATSTAHICIDKK---GKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVP 181 (1363)
T ss_pred cCCCCCceEEEEcCC---CceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeecc
Confidence 467788888887763 23669999999999999999 45555 99999999998665 7999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
+.+.++.+++..+++....+++++.....+.+.... .. ........+|......+.-.
T Consensus 182 ~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~--------------------~~--~s~~k~v~~w~t~~~k~~~~ 239 (1363)
T KOG3628|consen 182 LSELSSSEELKDIVNPTPERVALTTEAGERAFINDN--------------------SP--VSLAKAVAWWKTNDFKGNYT 239 (1363)
T ss_pred chhhhhhhhhhcccCCCccceEeehhhhHHHhhhcc--------------------Cc--ccHHHHHHhhhcccccceee
Confidence 999999999999999999999998876442211100 00 00000001111000000000
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHH---------------hh-----chhcCCCCCCEEEE
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA---------------EG-----WAHIDLKVGDVYCW 402 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~---------------~~-----~~~~~~~~~d~~l~ 402 (727)
......+.. .-. ..||-||++++|.--||+.+|+ ++...+ +. ...++....+.++.
T Consensus 240 ~~k~~~P~~--~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~ 315 (1363)
T KOG3628|consen 240 KDKIKKPRM--QLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLT 315 (1363)
T ss_pred hhhccCCce--eee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceee
Confidence 000011111 112 7999999999999999999997 433221 11 11133444555655
Q ss_pred ecccccccch-HHhHHhhhcCcEEEEecCCC--ChhhHHHHHHHhCCCEEEechHHHHHHHhc-----------CCCCCC
Q 004860 403 PTNLGWVMGP-VILFSSFLNGATLALYQGSP--LERSFGKFVQDAGVTVLGTVPSLVKAWRNT-----------NCLEGL 468 (727)
Q Consensus 403 ~~~~~~~~~~-~~~~~~l~~G~~lv~~~~~~--~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~-----------~~~~~~ 468 (727)
.....-..|+ ..++.+|++|.|.+.++... .+..+..++.+++.+++..--..+++-... ......
T Consensus 316 ~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~ 395 (1363)
T KOG3628|consen 316 NLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTP 395 (1363)
T ss_pred ccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCC
Confidence 5544444444 44889999999999998643 456788899999999887765555443221 011235
Q ss_pred CccceeEEEeecCCCChhhHHHHHhhCC---CC---c---------------ccccccccccccccccCCCC---C----
Q 004860 469 DWTKIRSFASTGETSNVDDDLWLSSKAW---YN---A---------------IIESCGGTELSSAYIQGSLL---Q---- 520 (727)
Q Consensus 469 ~l~~Lr~i~~gGe~l~~~~~~~~~~~~~---~~---~---------------l~n~YG~TE~~~~~~~~~~~---~---- 520 (727)
++++||.+++.-+.+..+..+....+.- +. + .+.+=+.+|.+....-.+.. .
T Consensus 396 d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e 475 (1363)
T KOG3628|consen 396 DLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGE 475 (1363)
T ss_pred CccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccc
Confidence 7899999999999888775433222210 10 0 01111223433221111000 0
Q ss_pred -----------------C-----ccccccccCCC-CceEEEECCC-CCcCCCCCCeeeeEEE-----ecccCCCCccccc
Q 004860 521 -----------------P-----QAFGAFSTATM-TAGLVILDEC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLN 571 (727)
Q Consensus 521 -----------------~-----~~~~~iG~p~~-~~~~~vld~~-~~~~p~G~~giGel~v-----~~~y~~~~~~~~~ 571 (727)
. ......|.-.+ ...+.|++++ .+.|..++ |||||| +.+|++-+.
T Consensus 476 ~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~e--VGEIwVsS~~~~~~~~al~~---- 549 (1363)
T KOG3628|consen 476 GLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDE--VGEIWVSSNSLGKLFYALDK---- 549 (1363)
T ss_pred eeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCc--ceeEEEecCCcccceeeccc----
Confidence 0 00011233333 3455666654 66778888 599999 344444322
Q ss_pred ccccccccccc------ccCCCceeeeeCceEEEecCceEEEEeecCCeee-cCceeechHHHHHH---------HhhcC
Q 004860 572 ADHEEVYFRGM------PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN-LGGIKTSSVEIERV---------CDQAD 635 (727)
Q Consensus 572 ~~~~~~~f~~~------p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik-~~G~ri~~~eIE~~---------l~~~~ 635 (727)
.|+.-|... +......+.|||=+|++.++ .++|+|-.+|++- ++|.+....+|-.. +.+..
T Consensus 550 --~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~g-ki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v 626 (1363)
T KOG3628|consen 550 --QTENTFKATPVESSGKPPSNVPFMRTGLLGFVHNG-KIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGV 626 (1363)
T ss_pred --cccceEEeeeccccCCCCccchhhhhcceeeeeCC-eEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhcc
Confidence 222233322 22233457899999999655 4667666666654 68887766554332 22456
Q ss_pred CCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCccc----ceEEEcCCCCCCCCchhhHH
Q 004860 636 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV----SLVKVVPEFPRTASNKLLRR 711 (727)
Q Consensus 636 p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P----~~i~~v~~lP~t~~GKvdR~ 711 (727)
+.|-++.|+- . ++.+..++-.+.. ..++-.++..+.++. +-..+.. -.++.-+.||||+-|-|.-.
T Consensus 627 ~~VF~~saf~------~-E~~~Vv~~esP~a--~e~~~~q~~~~v~q~-l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~ 696 (1363)
T KOG3628|consen 627 IAVFDVSAFE------D-EHIVVVVLESPDA--TEENSFQWMSRVFQA-LDSIHQVGVYCILIVPANTLPRTPLGGIHNN 696 (1363)
T ss_pred ceEEEEeeee------c-ceEEEEEEeCcch--hhhhhhhHHHHHHHH-HHHHhcccceEEEEeccccCCCccccccccH
Confidence 6777776664 2 5555544434332 222222333332322 2222222 13344478999998889999
Q ss_pred HHHHHHhh
Q 004860 712 VLRDQIKH 719 (727)
Q Consensus 712 ~L~~~~~~ 719 (727)
..++.|.+
T Consensus 697 ~~k~~F~~ 704 (1363)
T KOG3628|consen 697 ECKQAFLE 704 (1363)
T ss_pred HHHHHHHc
Confidence 99988864
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=104.62 Aligned_cols=70 Identities=34% Similarity=0.428 Sum_probs=58.8
Q ss_pred HHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCccc--ceEEEcCC-CCC
Q 004860 626 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV--SLVKVVPE-FPR 702 (727)
Q Consensus 626 eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P--~~i~~v~~-lP~ 702 (727)
|||++|. +||+|.+|+|++.+++..| ++++|||++ +. +.|+++++++||+||+| ..++.+++ ||+
T Consensus 1 EIE~~l~-~~~~V~~~~V~~~~d~~~g-~~l~a~vv~------~~----~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~ 68 (73)
T PF13193_consen 1 EIESVLR-QHPGVAEAAVVGVPDEDWG-ERLVAFVVL------DE----EEIRDHLRDKLPPYMVPRRIRFVRLDEELPR 68 (73)
T ss_dssp HHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEE------HH----HHHHHHHHHHS-GGGS-SEEEEEEESSSEEB
T ss_pred CHHHHHh-cCCCccEEEEEEEEccccc-ccceeEEEe------ee----cccccchhhhCCCcceeeEEEEccccCcCCC
Confidence 8999995 9999999999999998888 999999998 22 45666688889999999 66666677 999
Q ss_pred CCCch
Q 004860 703 TASNK 707 (727)
Q Consensus 703 t~~GK 707 (727)
|+|||
T Consensus 69 t~~GK 73 (73)
T PF13193_consen 69 TPSGK 73 (73)
T ss_dssp ETTSS
T ss_pred CCCCC
Confidence 99999
|
... |
| >PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.7e-12 Score=106.90 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCC------CccccCChhhhcccchHHHHHHhCCcccccc-
Q 004860 41 DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP------PLYWFPSLDQSKLTNLGNALEIHGPKLLGRA- 113 (727)
Q Consensus 41 ~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 113 (727)
+||+|||+. ||++|++.|..+.+|+ ||+||++++..... .....+.....+++||.+.+.+.++++.+.+
T Consensus 1 ~hq~~Pf~~-lv~~l~~~r~~~~~pl--fqv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~l~~~~~~~~l~~~~~ 77 (91)
T PF13745_consen 1 EHQDYPFER-LVEALGPPRDPSRNPL--FQVMFNYQNFSQSALDLGGLRLEPIPLENGGAKFDLTLEVREDGDGLRLQLE 77 (91)
T ss_dssp -T--S-HHH-HHHHT-----TTS-SS---SEEEEEE----S----SSEEEEE-SS--SB-SSSEEEEEEE-SS-EEEEEE
T ss_pred CCccCCHHH-HHHHhCcccCCccccc--cCeEEEEEecccccccCCCceEEEeeccccceeeeEEEEEEecCCeEEEEEE
Confidence 699999999 9999999999999999 99999999875532 2223345567899999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhCH
Q 004860 114 YKDPITSFRLFQKFTVEHP 132 (727)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~ 132 (727)
|++ ++|++.+|++|
T Consensus 78 Y~~-----~lf~~~ti~~~ 91 (91)
T PF13745_consen 78 YNT-----DLFSEETIERM 91 (91)
T ss_dssp EET-----TT--HHHHHHH
T ss_pred EEh-----HhCCHHHHhcC
Confidence 999 99999999875
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-08 Score=102.60 Aligned_cols=236 Identities=17% Similarity=0.077 Sum_probs=128.2
Q ss_pred CCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHh---hchhcCCCCCC--EEEEecccccccc-----hHHhHHhhhcC
Q 004860 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGD--VYCWPTNLGWVMG-----PVILFSSFLNG 422 (727)
Q Consensus 353 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~---~~~~~~~~~~d--~~l~~~~~~~~~~-----~~~~~~~l~~G 422 (727)
.+++++..++.||||||.|--+.+.+..+...... ....+...... .++...|-..... .......+..+
T Consensus 86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
T PF04443_consen 86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG 165 (365)
T ss_pred cChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence 34567778899999999986666665544433322 22222222222 2333333221111 11223334455
Q ss_pred cEEEEec-CCCChhhHHHHH----HHhCCCEEEechHHHHHHHhcCCCC--CCCcc-ceeEEEeec------CCCChh-h
Q 004860 423 ATLALYQ-GSPLERSFGKFV----QDAGVTVLGTVPSLVKAWRNTNCLE--GLDWT-KIRSFASTG------ETSNVD-D 487 (727)
Q Consensus 423 ~~lv~~~-~~~~~~~l~~~i----~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~-~Lr~i~~gG------e~l~~~-~ 487 (727)
.. .... ...+.+.+.+.+ .+.++..+++.|.++-.++...... ...|+ ..+.+-.|| |.++.+ .
T Consensus 166 ~~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef 244 (365)
T PF04443_consen 166 SR-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEF 244 (365)
T ss_pred ce-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHH
Confidence 55 3333 234555555444 3556778888888666655432222 22333 344444444 345543 3
Q ss_pred HHHHHhhCCC---CcccccccccccccccccCCCCCCccccccccCCCCceEEEECC-CCCcCCCCCCeeeeEEEecccC
Q 004860 488 DLWLSSKAWY---NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFPLYL 563 (727)
Q Consensus 488 ~~~~~~~~~~---~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~~~y~ 563 (727)
.+.+.+.++- ..+++.||+||.......+.... .++|.. +.|.|+ +.+++|.|+. |-|.+-..+.
T Consensus 245 ~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~--------~~~p~w-V~iRDp~tl~~~~~Ge~--Gli~vidl~~ 313 (365)
T PF04443_consen 245 YARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH--------FHVPPW-VIIRDPETLEPLPPGET--GLIQVIDLAN 313 (365)
T ss_pred HHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCc--------ccCCCe-EEEECCCCCcCCCCCCe--eEEEEEcccc
Confidence 4555555532 36999999999876544332111 123323 777785 5789999986 7777633322
Q ss_pred CCCccccccccccccccccccCCCceeeeeCceEEEecC--------ceEEEEeecCCeeecCceee
Q 004860 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG--------GYIIVQGRADDTMNLGGIKT 622 (727)
Q Consensus 564 ~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~d--------G~l~~~GR~dd~ik~~G~ri 622 (727)
.. .++ ..-|.|+|.+..+ .++.++||.+. -.+||-..
T Consensus 314 ~s-------------------~p~--~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~-ae~RGCs~ 358 (365)
T PF04443_consen 314 TS-------------------YPG--FILTEDLGVLHGDDDCGCRKGKYFEVLGRADG-AEIRGCSL 358 (365)
T ss_pred cC-------------------CCc--EEEEcceeeecCCCCCCCccCCEEEEEeCCCC-CccCCcHH
Confidence 11 112 2459999988654 27999999874 23566544
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.3e-06 Score=92.50 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=50.1
Q ss_pred eeeCceEEEec--Cc--eEEEEeecCCeeecCceeechHHHHHHHhhc----CCCceeeEEEeecCCCCCceEEEEEEEe
Q 004860 591 RRHGDIIKRTV--GG--YIIVQGRADDTMNLGGIKTSSVEIERVCDQA----DESILETAAISVSPAGGGPEVLVIFVVL 662 (727)
Q Consensus 591 yrTGDl~~~~~--dG--~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~----~p~V~~a~vv~~~~~~~~~~~l~a~vv~ 662 (727)
|+.||+++... ++ .|+|+||.+.++++.|+++.-.+|+.++.+. .-.+.+..+......... ..-+.|+.+
T Consensus 371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~-~~Y~~~~e~ 449 (528)
T PF03321_consen 371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNP-PHYVLFWEL 449 (528)
T ss_dssp EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSS-BEEEEEEEE
T ss_pred eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCC-CceEEEEEe
Confidence 89999999853 44 7999999999999999999999999999643 233556555544222232 566667777
Q ss_pred cCC
Q 004860 663 KKG 665 (727)
Q Consensus 663 ~~~ 665 (727)
...
T Consensus 450 ~~~ 452 (528)
T PF03321_consen 450 EGE 452 (528)
T ss_dssp CS-
T ss_pred CCC
Confidence 653
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0011 Score=74.22 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=38.6
Q ss_pred eeeeCceEEEec----CceEEEEeecCCeeecCceeechHHHHHHHhh
Q 004860 590 LRRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (727)
Q Consensus 590 ~yrTGDl~~~~~----dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~ 633 (727)
-|+.||.+++.. --.|.|+||.+.++++.|+++.-.+++.+|.+
T Consensus 409 RY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 409 RYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred EeecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 389999999853 34799999999999999999999999998863
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0052 Score=68.31 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=37.9
Q ss_pred eeeeCceEEEe----cCceEEEEeecCCeeecCceeechHHHHHHHhh
Q 004860 590 LRRHGDIIKRT----VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (727)
Q Consensus 590 ~yrTGDl~~~~----~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~ 633 (727)
-||.||+++.. .--.+.|++|.+.+..+.|.+.+-.++-.++.+
T Consensus 422 RYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 422 RYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKN 469 (612)
T ss_pred EEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHH
Confidence 38999999874 456799999999999999999999999888753
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00025 Score=59.52 Aligned_cols=86 Identities=24% Similarity=0.377 Sum_probs=56.3
Q ss_pred ceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCC---ChHHHHHHHHHHHHhhcCCCcccceEE
Q 004860 619 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS---QPDKLKMIFSKAIQSKLNPLFKVSLVK 695 (727)
Q Consensus 619 G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~---~~~~l~~~l~~~l~~~L~~~~~P~~i~ 695 (727)
|.+|+|..||++|. ++|++....-+.+...... +.+...|.+.++... +.+++.+.|.+.+++.|. ..| .+.
T Consensus 1 GvnvfP~~Ie~vl~-~~~~~~~~y~i~v~~~~~~-D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lg--v~~-~V~ 75 (96)
T PF14535_consen 1 GVNVFPSQIEEVLR-EFPEVSPEYQIVVTREGGL-DELTVRVELRPGFSDDAEDLEALAERIAERLKERLG--VRP-EVE 75 (96)
T ss_dssp TEEE-HHHHHHHHC-TSTTEEEEEEEEEEEETTE-EEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHS--S-E-EEE
T ss_pred CcEECHHHHHHHHH-hCcCCCCcEEEEEEcCCCC-cEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcC--ceE-EEE
Confidence 88999999999995 8999994444444333333 788888998886432 347788888888988886 233 444
Q ss_pred Ec--CCCCCCCCchhhH
Q 004860 696 VV--PEFPRTASNKLLR 710 (727)
Q Consensus 696 ~v--~~lP~t~~GKvdR 710 (727)
++ .+||++ .||..|
T Consensus 76 lv~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 76 LVPPGTLPRS-EGKAKR 91 (96)
T ss_dssp EE-TT-S----SSSS-S
T ss_pred EECCCCccCC-CCcceE
Confidence 44 589997 678654
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.017 Score=64.50 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=37.7
Q ss_pred eeeeCceEEE----ecCceEEEEeecCCeeecCceeechHHHHHHHh
Q 004860 590 LRRHGDIIKR----TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (727)
Q Consensus 590 ~yrTGDl~~~----~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (727)
-||.||+.+. +.--.+.|++|.+.+..+.|.+..-.++-.++.
T Consensus 416 RYrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~ 462 (606)
T PLN02247 416 RYRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVT 462 (606)
T ss_pred EEecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHH
Confidence 3899999986 345689999999999999999999999988885
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.70 E-value=1 Score=48.23 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=68.8
Q ss_pred ceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH--HHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEE
Q 004860 208 NLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV--RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGI 284 (727)
Q Consensus 208 ~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~--~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~i 284 (727)
--+|..++...+..+|+.|... ..+||+|.++..-+. .-+-.-+|+.++|++++|+.+.. -++-..++++.++.+|
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-~~~~~~l~~df~~tvI 186 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-TERQLELMKDFKPTVI 186 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-HHHHHHHHHhcCCcEE
Confidence 4689999999999999999999 999999998876221 11567889999999999998844 4566779999999999
Q ss_pred Eeeccc
Q 004860 285 FTQDFI 290 (727)
Q Consensus 285 l~~~~~ 290 (727)
.+..++
T Consensus 187 ~~tps~ 192 (438)
T COG1541 187 AATPSY 192 (438)
T ss_pred EEChHH
Confidence 998864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 727 | ||||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 1e-39 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 2e-39 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 2e-39 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 3e-39 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 7e-39 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 1e-38 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 2e-38 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 1e-25 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 5e-11 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 5e-11 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 1e-10 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 5e-10 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 2e-08 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 1e-07 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 2e-07 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 5e-07 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 1e-06 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 2e-06 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 2e-06 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 3e-06 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 1e-05 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 2e-05 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 2e-04 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 5e-04 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 6e-04 | ||
| 3ite_A | 562 | The Third Adenylation Domain Of The Fungal Sidn Non | 6e-04 |
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 6e-54
Identities = 123/566 (21%), Positives = 202/566 (35%), Gaps = 69/566 (12%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
P ++ N A L + + T A + TY EL E+ A+AL
Sbjct: 17 EAPPALFNFAA--YLFRLNETRAGKT-AYIDDTGS--------TTYGELEERARRFASAL 65
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
T+ + I + M TV + +L + AG V V + L S A+ +
Sbjct: 66 RTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125
Query: 286 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
++ ++ L +A L P +++ + +
Sbjct: 126 ASGALV------QNVTQALESAEHDGCQLIVSQPRESEP--RLAPLFEELIDA-----AA 172
Query: 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWP 403
D + L+SSG+TG+PK T +++ TAE +A + + DV
Sbjct: 173 PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH-ANLYWTAELYAKPILGIAENDVVFSA 231
Query: 404 TNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT 462
L + G L GAT L P + + + TV VP+L +
Sbjct: 232 AKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS 291
Query: 463 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYIQGSL 518
L IR S GE ++ + + I++ G TE+ ++ +
Sbjct: 292 PNLPARADVAIRICTSAGEALPR--EIG---ERFTAHFGCEILDGIGSTEMLHIFL-SNR 345
Query: 519 LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNAD 573
+G + + DE G PD + VG++ +Y N +
Sbjct: 346 AGAVEYGTTGRPVPGYEIELRDEAGHAVPDGE--VGDLYIKGPSAAVMYWN------NRE 397
Query: 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633
F G R GD R G + GR+DD + + G S VE+E V Q
Sbjct: 398 KSRATFLG-----EWI--RSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ 450
Query: 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMI--FSKAIQSKLNPLFKV 691
+++LE A + V G FVVLK+ F + + F K +L P K
Sbjct: 451 -HDAVLEAAVVGVDHGGL--VKTRAFVVLKREFAPSEILAEELKAFVKD---RLAP-HKY 503
Query: 692 -SLVKVVPEFPRTASNKLLRRVLRDQ 716
+ V + P+TA+ K+ R LR+Q
Sbjct: 504 PRDIVFVDDLPKTATGKIQRFKLREQ 529
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 2e-46
Identities = 122/579 (21%), Positives = 203/579 (35%), Gaps = 91/579 (15%)
Query: 173 LNIAECCL---LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM 229
N A L K + A+ W + E ++EL E AN L
Sbjct: 37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELM---WNFRELSENSQQAANVLSGA 93
Query: 230 F--SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 287
+GD +A+ +P ++ L I AG + + + +I RL++SKAK I
Sbjct: 94 CGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAG 153
Query: 288 DFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343
D + +V A L+ +L V + L++K L+
Sbjct: 154 D---------EVIQEVDTVASECPSLRIKLL------VSEKSCDGWLNFKKLLNEA---- 194
Query: 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWP 403
+ V I F+SGT+G PK + S L+ D+
Sbjct: 195 -STTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTI 253
Query: 404 TNLGWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPS----LVK 457
++ GW++ + L + GA ++ + K + + + P L++
Sbjct: 254 SDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQ 313
Query: 458 AWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAY 513
L + +++ + GE+ + + W I ES G TE +
Sbjct: 314 QD-----LSSYKFPHLQNCVTVGESLL--PETL---ENWRAQTGLDIRESYGQTE-TGLT 362
Query: 514 IQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE----------VGLFPLYL 563
S G TA + I+D+ G P G+ +G+F Y+
Sbjct: 363 CMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT--EGDIGIRVKPIRPIGIFSGYV 420
Query: 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 623
D+ + + GD + GY GRADD +N G +
Sbjct: 421 DNPDKTAANIRGDFWLL-------------GDRGIKDEDGYFQFMGRADDIINSSGYRIG 467
Query: 624 SVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQP-DKLKMIFSKAI 681
E+E +++ETA IS P G EV+ FVVL F S ++L K +
Sbjct: 468 PSEVENAL-MEHPAVVETAVISSPDPVRG--EVVKAFVVLASQFLSHDPEQLT----KEL 520
Query: 682 Q----SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 716
Q S P ++ V P+T + K+ R LRD+
Sbjct: 521 QQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 2e-43
Identities = 123/635 (19%), Positives = 215/635 (33%), Gaps = 101/635 (15%)
Query: 122 RLFQKFTVEHPEAYWEIALKEISVV---FREAPKCILDRTDKSKHGGTWLPGSVLNIAEC 178
H + + K ++ + F + + + L N A
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMTSLLSQFVSKTD--FESYEDFQENFKILVPENFNFAYD 60
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
+ + R +A++W +D +E T+K+L+ AN KGD +
Sbjct: 61 VV--DVYARDSPEKLAMIWCDDYGNEKIF---TFKDLKYYSDKAANFFVKHGIGKGDYVM 115
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
+ + L + G + V R+I R+ + K I
Sbjct: 116 LTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA----EDDVP 171
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL-SSVDYHPRPNYYSPVYNPVD 356
+ +P VG + E + ++ L S RP D
Sbjct: 172 EQVDEAHAECG----DIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVST-KNED 226
Query: 357 AVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCW-PTNLGWVMGP 412
+ + FSSGT G PK + L I TA+ W +++ ++ + + GW
Sbjct: 227 ICL-VYFSSGTAGFPKMVEHDNTYPLGHIL-TAKYW--QNVEDDGLH-YTVADSGWGKCV 281
Query: 413 V-ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVP----SLVKAWRNTNCLE 466
L+ ++ G + +Y E ++ + GVT P L+K L
Sbjct: 282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-----LS 336
Query: 467 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTE--LSSAYIQGSLLQ 520
+++ ++ GE N +++ + ++E G TE ++ A +
Sbjct: 337 HYNFSTLKYAVVAGEPLN--PEVF---NRFLEFTGIKLMEGFGQTETVVTIATFPWMEPK 391
Query: 521 PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE----------VGLFPLYLGASDRLL 570
P G+ T + ++D G + GE VGLF Y +R
Sbjct: 392 P---GSIGKPTPGYKIELMDRDGRLCEVGE--EGEIVINTMEGKPVGLFVHYGKDPERTE 446
Query: 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERV 630
H+ Y GD+ GY+ GRADD + G K E+E
Sbjct: 447 ETWHDGYYHT-------------GDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESA 493
Query: 631 CDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQ--- 682
++LE A V P +V+ +VL K +T D LK +Q
Sbjct: 494 L-IQHPAVLECAITGV------PDPVRGQVIKATIVLTKDYTPS-DSLK----NELQDHV 541
Query: 683 -SKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 716
+ P +++ VPE P+T S K+ R +RD+
Sbjct: 542 KNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDK 576
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 5e-41
Identities = 161/675 (23%), Positives = 258/675 (38%), Gaps = 134/675 (19%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT-DKSKHGG 165
+ R +P +++ ++ P+ +W K + + + + + +
Sbjct: 11 ANIADRCLINPEQYETKYKQ-SINDPDTFWGEQGKILD--WITPYQKVKNTSFAPGNVSI 67
Query: 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANA 225
W LN+A CL H ++ + AI+W D +S ++Y+EL V AN
Sbjct: 68 KWYEDGTLNLAANCL--DRHLQENGDRTAIIWEGDDTSQSKH--ISYRELHRDVCRFANT 123
Query: 226 LDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATR 275
L + KGD +AI MPM A + LA +I G F+ +A
Sbjct: 124 LLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG---------FSPEAVAGC 174
Query: 276 LRVSKAKGIFTQDFILRGGRKFPLYSKV-----LGAAPL--KAIVLPAIGNDVG-IPLRE 327
+ S ++ + T D +R GR PL V IVL G+D+ R
Sbjct: 175 IIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGR- 233
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCT 385
DL W+D + + P ++A + IL++SG+TG+PK + T T
Sbjct: 234 -DLWWRDLIEKA-----SPEHQPE--AMNAEDPLFILYTSGSTGKPKGVLHT-------T 278
Query: 386 AEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLE 434
G +A D GD+Y W T ++GWV G +L+ GAT +++G P
Sbjct: 279 G-GYLVYAATTFKYVFDYHPGDIY-WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336
Query: 435 RSFGKF---VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNV 485
+ + V V +L T P+ ++A EG + +R S GE N
Sbjct: 337 PTPARMCQVVDKHQVNILYTAPTAIRALMA----EGDKAIEGTDRSSLRILGSVGEPIN- 391
Query: 486 DDDLWLSSKAWYNAIIESCGGTELSSAYI-----Q----GSLLQPQAFGAFSTATMTAGL 536
+ W WY I G + Q G ++ P GA +A
Sbjct: 392 -PEAWE----WYWKKI---GK---EKCPVVDTWWQTETGGFMITPLP-GAIELKAGSATR 439
Query: 537 -------VILDECGVPYPDDQPCVGEVGLFPLYLGASD------RLLNADHE---EVYFR 580
++D G P G L +D R L DHE + YF
Sbjct: 440 PFFGVQPALVDNEGHPQEG-----ATEG----NLVITDSWPGQARTLFGDHERFEQTYF- 489
Query: 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640
+K M GD +R GY + GR DD +N+ G + + EIE A I E
Sbjct: 490 --STFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAE 544
Query: 641 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEF 700
A + + A G + + +V L G +L ++ ++ PL ++
Sbjct: 545 AAVVGIPHAIKG-QAIYAYVTLNHGEEP-SPELYAEVRNWVRKEIGPLATPDVLHWTDSL 602
Query: 701 PRTASNKLLRRVLRD 715
P+T S K++RR+LR
Sbjct: 603 PKTRSGKIMRRILRK 617
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 6e-34
Identities = 109/560 (19%), Positives = 190/560 (33%), Gaps = 97/560 (17%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
+AI +Y+EL + +A + + D + + +P +
Sbjct: 42 IAITCGNTH--------WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIF 93
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LK 310
A+ G + V S + EI ++A D G L +V P LK
Sbjct: 94 ALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPD-AYSGFDYRSLARQVQSKLPTLK 152
Query: 311 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGE 370
I++ G E+ L +D + P V + S G+TG
Sbjct: 153 NIIV------AGEA--EEFLPLEDLHTEPVKLPEVKS--------SDVAFLQLSGGSTGL 196
Query: 371 PKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGA 423
K IP T + S++ + E L VY N V+ G
Sbjct: 197 SKLIPRTHDDYIYSLKRSVEVC---WLDHSTVYLAALPMAHNYPLSSPGVL--GVLYAGG 251
Query: 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482
+ L SP + +F ++ VT+ VP L W + D + ++ G
Sbjct: 252 RVVLSPSPSP-DDAF-PLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGG-- 307
Query: 483 SNVDDDLWLSSKAWYNAIIESC-GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL-- 539
+ + KA + ++ G E G + + T G +
Sbjct: 308 AKFSAEAARRVKAVFGCTLQQVFGMAE-------GLVNYTRLDDPEEIIVNTQGKPMSPY 360
Query: 540 DECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNADHEEVYFRG---MPMYKGM------C 589
DE V D+ GE G + RG + Y
Sbjct: 361 DESRVWDDHDRDVKPGETG------------------HLLTRGPYTIRGYYKAEEHNAAS 402
Query: 590 LRRHG-----DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
G DI++ T GYI+V+GRA D +N GG K ++ E+E A ++ + A +
Sbjct: 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAMV 461
Query: 645 SV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPR 702
S+ G E +F++ + + + + + + +K+ V+ V FP+
Sbjct: 462 SMPDQFLG--ERSCVFIIPRDEAPKAAELKAFLRERGLAA-----YKIPDRVEFVESFPQ 514
Query: 703 TASNKLLRRVLRDQIKHELS 722
T K+ ++ LR+ I +L
Sbjct: 515 TGVGKVSKKALREAISEKLL 534
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 4e-33
Identities = 112/579 (19%), Positives = 188/579 (32%), Gaps = 116/579 (20%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
R +++A++ E + ++Y+EL + +A +L G+ + +
Sbjct: 34 TRHAASDSIAVIDGERQ--------LSYRELNQAADNLACSLRRQGIKPGETALVQLGNV 85
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
I + A++ G V S E+ + + + L+S
Sbjct: 86 AELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADR-------QHALFSGD 138
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
+I + D + ++++ +P P D V
Sbjct: 139 DFLNTFVT-EHSSIRVVQLLN----DSGEHNLQDAINHPAEDFTATPS--PADEVAYFQL 191
Query: 364 SSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILF 416
S GTTG PK IP T S+R + E Y N P L
Sbjct: 192 SGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSS-PGSL- 246
Query: 417 SSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS 475
FL G T+ L S F ++ V V VP V W
Sbjct: 247 GVFLAGGTVVLAADPSA-TLCF-PLIEKHQVNVTALVPPAVSLWLQ-------------- 290
Query: 476 FASTGETSNVDDDLWLSS-KAWYNAIIESCGGTELSSAYIQ------GSLLQPQAFGAFS 528
A S L+S K GG LS+ G LQ Q FG
Sbjct: 291 -ALIEGESRAQ----LASLKLLQ------VGGARLSATLAARIPAEIGCQLQ-QVFG--- 335
Query: 529 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEV----------- 577
M GLV + + G P+ + +A+ +
Sbjct: 336 ---MAEGLVN---YTRLDDSAEKIIHTQGY-PMCPDDEVWVADAEGNPLPQGEVGRLMTR 388
Query: 578 -------YFRGMPMYKGMCLRRHG-----DIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625
Y++ P + +G D+I GYI VQGR D +N GG K ++
Sbjct: 389 GPYTFRGYYK-SPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAE 447
Query: 626 EIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
EIE + +++ A +S+ G E ++V+K+ +++ + ++ +
Sbjct: 448 EIENLLL-RHPAVIYAALVSMEDELMG--EKSCAYLVVKEPLR--AVQVR----RFLREQ 498
Query: 685 LNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722
FK+ V+ V P TA K+ ++ LR + S
Sbjct: 499 GIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRAS 537
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-29
Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 82/418 (19%)
Query: 126 KFTVEHPEAYW-EIALKEIS--VVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLP 182
K ++E P ++ A + ++ F + S W LN C+
Sbjct: 31 KESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCV-- 88
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF--SKGDAIAIDM 240
H K N AI++ D + +TYKEL E+V VA L KGD +A+ M
Sbjct: 89 DRHALKTPNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYM 146
Query: 241 PMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
PM A+I LA ++ AG F++ + R+ +K + T D
Sbjct: 147 PMVPEAIITLLAISRIGAIHSVVFAG---------FSSNSLRDRINDGDSKVVITTDESN 197
Query: 292 RGGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRP 345
RGG+ V L P +V N + +DL W
Sbjct: 198 RGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP-SVAFHAPRDLDWATEKKKY-----K 251
Query: 346 NYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHI------DL 394
YY PVD+ + +L++SG+TG PK + + TA G A + D
Sbjct: 252 TYYPCT--PVDSEDPLFLLYTSGSTGAPKGVQHS-------TA-GYLLGALLTMRYTFDT 301
Query: 395 KVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVL 449
DV+ + ++GW+ G +++ L G +++G+P ++ ++ + + VT
Sbjct: 302 HQEDVF-FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQF 360
Query: 450 GTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAII 501
P+ ++ + G + + +R S GE ++W WY+ I
Sbjct: 361 YVAPTALRLLKR----AGDSYIENHSLKSLRCLGSVGEPIA--AEVWE----WYSEKI 408
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 5e-09
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 26/164 (15%)
Query: 573 DHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 629
+H+ + Y Y G GD + GYI + GR DD +N+ G + S+ EIE
Sbjct: 489 NHDRYLDTYL---NPYPGYYFT--GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEA 543
Query: 630 VCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQP------DKLKMIFS 678
D + E A + G + + FVVLK + +K
Sbjct: 544 AII-EDPIVAECAVV------GFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLV 596
Query: 679 KAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722
++ + P L+ +V + P+T S K++RR+LR + E
Sbjct: 597 FTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESD 640
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 3e-28
Identities = 94/559 (16%), Positives = 180/559 (32%), Gaps = 109/559 (19%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLA 252
+AI ++ TY+ L + L+A L + + + + +++++I+ A
Sbjct: 18 IAITDGQES--------YTYQNLYCEASLLAKRL--KAYQQSRVGLYIDNSIQSIILIHA 67
Query: 253 IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI 312
LA + I E+ ++R + IF PL + L I
Sbjct: 68 CWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL---------PLELRGFQIVSLDDI 118
Query: 313 VLPAIGNDV-GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
G+ + + +V P+ +D + +I+F+SGTTG
Sbjct: 119 EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQ 178
Query: 372 KAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430
KA+P T + +A G + + + + G +L + + G T+ +
Sbjct: 179 KAVPQTF-RNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237
Query: 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLW 490
E+ +++ +T + VP + + ++ G + + +
Sbjct: 238 FNAEQIL-TMIKNERITHISLVPQTLNWLMQQ---GLHEPYNLQKILLGG--AKLSATMI 291
Query: 491 LSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP--- 547
++ + I S G TE S Q P+ D G+P
Sbjct: 292 ETALQYNLPIYNSFGMTETCS---QFLTATPE-----------MLHARPDTVGMPSANVD 337
Query: 548 ----DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG---MPMYKGMCLRR-------- 592
+ G E+ +G M Y L
Sbjct: 338 VKIKNPNK--EGHG------------------ELMIKGANVMNGY----LYPTDLTGTFE 373
Query: 593 ----H-GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647
+ GDI + GY+++ R D + GG +IE V Q I + +
Sbjct: 374 NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQ-FPGISDAVCV--- 429
Query: 648 PAGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFP 701
G P +V ++ V + + +L + L +KV + V P
Sbjct: 430 ---GHPDDTWGQVPKLYFVSESDIS--KAQLIA-YLSK---HLAK-YKVPKHFEKVDTLP 479
Query: 702 RTASNKLLRRVLRDQIKHE 720
T++ KL R L + H
Sbjct: 480 YTSTGKLQRNKLYREGHHH 498
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 111/585 (18%), Positives = 178/585 (30%), Gaps = 131/585 (22%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
NI + A V D MTY ++ A+ L + +
Sbjct: 16 KNIGW---MLRQRATVSPRLQAYVEPST--DVR----MTYAQMNALANRCADVLTALGIA 66
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
KGD +A+ MP +V ++ G V V I AA E++ L S +K +
Sbjct: 67 KGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA 126
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
P+ + A V IG D S + L S
Sbjct: 127 ------PVIDAIRAQADPPGTVTDWIGAD----------SLAERLRSAAADEPAVECGG- 169
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 411
D + I+++SGTTG PK + T S + + ID++ D +
Sbjct: 170 ----DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLL-------LPL 218
Query: 412 PVILFSSF-LNGATLALYQGSP--LERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTN 463
P +F L + +G F + + V + G VP+++ R
Sbjct: 219 P--MFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVP 276
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523
LD R F + G + + + L A +++ TE G+LL +
Sbjct: 277 EFAELDAPDFRYFITGG--APMPEALIKIYAAKNIEVVQGYALTESCGG---GTLLLSE- 330
Query: 524 FGAFSTATMTAGLVILDECGVPYP---------DDQPCVGEVGLFPLYLGASDRLLNADH 574
L G D G
Sbjct: 331 ----------DALRKAGSAGRATMFTDVAVRGDDGVIREHGEG----------------- 363
Query: 575 EEVYFRG---MPMYKGMCLRR-------------H-GDIIKRTVGGYIIVQGRADDTMNL 617
EV + + Y R GDI + GY+ ++ R D +
Sbjct: 364 -EVVIKSDILLKEY----WNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS 418
Query: 618 GGIKTSSVEIERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDK 672
GG EIE V + E A I + P E+ VV + +
Sbjct: 419 GGENVYPAEIESVIIGVPG-VSEVAVIGL------PDEKWGEIAAAIVVADQN-EVSEQQ 470
Query: 673 LKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQ 716
+ + +L +K+ V PR + K+L+ VLR+Q
Sbjct: 471 IVE-YCGT---RLAR-YKLPKKVIFAEAIPRNPTGKILKTVLREQ 510
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 2e-25
Identities = 86/575 (14%), Positives = 162/575 (28%), Gaps = 113/575 (19%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
+A+ + + + A + R +T+++ + +A+ L
Sbjct: 6 FTLAD---VYRRNAALFPDRTAFMVDGVR--------LTHRDYLARAERLASGLLRDGVH 54
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
GD +AI + + A+ L G +++ + A EIA L +
Sbjct: 55 TGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR 114
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
+ + VL + + + + F P
Sbjct: 115 ------DIVAGVLPSLGGVKKA---------YAIGDGSGPFAPFKDLASDTPFS----AP 155
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 411
I+ ++ G P+ +Q + + + L DV L V G
Sbjct: 156 EFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTG 215
Query: 412 PVILFSSFLNGATLALYQGSPLERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTNCLE 466
++ + G + F + ++ VTV+ ++ +
Sbjct: 216 LGLMLTLQQAGGASV------IAAKFDPAQAARDIEAHKVTVMAEFAPML--GNILDQAA 267
Query: 467 GLDWTKIRSFASTG--ETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQA 523
+R+ ET + NA + G +E S + +
Sbjct: 268 PAQLASLRAVTGLDTPET------IERFEATCPNATFWATFGQSETSGL---STFAPYRD 318
Query: 524 -FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG- 581
+ + ++D P P GEVG E+ RG
Sbjct: 319 RPKSAGRPLFWRTVAVVDAEDRPLP-----PGEVG------------------EIVLRGP 355
Query: 582 --MPMYKGM------CLR----RHGDIIKRTVGGYIIVQGRAD--DTMNLGGIKTSSVEI 627
Y R GD+ + GY+ GRA + + GG E+
Sbjct: 356 TVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEV 415
Query: 628 ERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 682
E Q +I + I V P E + V K G + D L F +
Sbjct: 416 EGALKQ-HPAIADAVVIGV------PDPQWSEAIKAVCVCKPGESIAADAL-AEFVAS-- 465
Query: 683 SKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQ 716
+ +K V V P+ A + R ++
Sbjct: 466 -LIAR-YKKPKHVVFVEALPKDAKGAIDRAAVKTA 498
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 47/279 (16%), Positives = 87/279 (31%), Gaps = 25/279 (8%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y E E+ + AL IA+ I +A + G V + +
Sbjct: 53 YSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYT 112
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ L +SK +F+ KV+ + + D
Sbjct: 113 LRELVHSLGISKPTIVFSSK---------KGLDKVITVQKTVTTIKTIVILD-SKVDYRG 162
Query: 329 DLSWKDFLS--SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIR 383
F+ + ++ + + + V I+ SSG+TG PK + T ++
Sbjct: 163 YQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFS 222
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER----SFGK 439
+ + G G + G + + L + +F K
Sbjct: 223 HARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVM-----LTKFDEETFLK 277
Query: 440 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+QD T + VP+L + L D + + AS
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIAS 316
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 8e-07
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 636 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV--S 692
SI + V P G E+ VVL+ G ++ + S+++ K
Sbjct: 464 PSIFDAGVAGVPDPVAG--ELPGAVVVLESGKNMTEKEVM----DYVASQVSN-AKRLRG 516
Query: 693 LVKVVPEFPRTASNKLLRRVLRDQIKHELS 722
V+ V E P+ + K+ R +R+ +K ++
Sbjct: 517 GVRFVDEVPKGLTGKIDGRAIREILKKPVA 546
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 3e-25
Identities = 44/284 (15%), Positives = 91/284 (32%), Gaps = 35/284 (12%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY E E + +A A+ + I + +++ + L + G V D +
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-----PLKAIVLPAIGNDVGI 323
RE+ + +S+ +F K+L K I++ + + G
Sbjct: 111 ERELLNSMNISQPTVVFVSK---------KGLQKILNVQKKLPIIQKIIIMDSKTDYQGF 161
Query: 324 PLREQDLSWKDFLSSVD--YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ--- 378
S F++S ++ ++ + I+ SSG+TG PK +
Sbjct: 162 Q------SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTA 215
Query: 379 LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER--- 435
+ + G + G + L + R
Sbjct: 216 CVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVL-----MYRFEE 270
Query: 436 -SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
F + +QD + VP+L + + ++ D + + AS
Sbjct: 271 ELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS 314
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 636 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV--S 692
+I + + G E+ VVL+ G T ++ + S++ K
Sbjct: 462 PNIFDAGVAGLPDDDAG--ELPAAVVVLEHGKTMTEKEIV----DYVASQVTT-AKKLRG 514
Query: 693 LVKVVPEFPRTASNKLLRRVLRDQIKHELS 722
V V E P+ + KL R +R+ +
Sbjct: 515 GVVFVDEVPKGLTGKLDARKIREILIKAKK 544
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-23
Identities = 49/299 (16%), Positives = 103/299 (34%), Gaps = 40/299 (13%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
AI+ E + M + E+ E +A+ + KG+ + + +P ++ V+
Sbjct: 34 EKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
A+ V I + + E+ L S+A + + + VL +
Sbjct: 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGV 147
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
+ + + + S + + S ++ + NP + V I ++ GTTG
Sbjct: 148 ERVFVVG----------GEVNSLSEVMDS----GSEDFENVKVNPEEDVALIPYTGGTTG 193
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF-LNGATLALY 428
PK + T + + L D ++G + +F S L +
Sbjct: 194 MPKGVMLTHFNLAANALQLAVATGLSHMDT---------IVGCMPMFHSAEFGLVNLMVT 244
Query: 429 QGSPL-------ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFAS 478
G+ + + ++ T VP + NT + DW+ ++ FA+
Sbjct: 245 VGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFAT 303
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGG 652
GD+ G++ Q R + + G + E+E + E++++ A I G
Sbjct: 421 GDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALL-MKHEAVMDVAVIGKPDEEAG- 478
Query: 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRR 711
EV F+VLK + + D+ +I + ++ +++ +K V+ V E PRTAS KLLRR
Sbjct: 479 -EVPKAFIVLKPEYRGKVDEEDII--EWVRERISG-YKRVREVEFVEELPRTASGKLLRR 534
Query: 712 VLRDQIK 718
+LR++
Sbjct: 535 LLREKEA 541
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 5e-23
Identities = 51/269 (18%), Positives = 90/269 (33%), Gaps = 46/269 (17%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY ++ +A + ++ D + + +P V+ +LA G + F
Sbjct: 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + + S K I T+ K+ +V+ I ++ +P+ E
Sbjct: 149 PAEIAKQAKASNTKLIITEA---------RYVDKIKPLQNDDGVVIVCIDDNESVPIPEG 199
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS-------S 381
L + + S V D VV + +SSGTTG PK + L+
Sbjct: 200 CLRFTELTQSTT--EASEVIDSVEISPDDVVALPYSSGTTGLPKGV---MLTHKGLVTSV 254
Query: 382 IRCTAEGWAHIDLKVGDVYCWPTNLGW-----VMGPVILFSSFLNGATLALYQGSPL--- 433
+ ++ DV L + +S + L G+ +
Sbjct: 255 AQQVDGENPNLYFHSDDVI-----LCVLPMFHIYA----LNSIMLC---GLRVGAAILIM 302
Query: 434 ----ERSFGKFVQDAGVTVLGTVPSLVKA 458
+ +Q VTV VP +V A
Sbjct: 303 PKFEINLLLELIQRCKVTVAPMVPPIVLA 331
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 636 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVK 695
I + A +++ G EV V FVV K D +K + + ++ +++ V
Sbjct: 504 PDITDVAVVAMKEEAAG-EVPVAFVVKSKDSELSEDDVK----QFVSKQVVFYKRINKVF 558
Query: 696 VVPEFPRTASNKLLRRVLRDQIKHE 720
P+ S K+LR+ LR ++ +
Sbjct: 559 FTESIPKAPSGKILRKDLRAKLANG 583
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-22
Identities = 58/289 (20%), Positives = 95/289 (32%), Gaps = 41/289 (14%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
+AI+ E + ++Y EL +A L KGD + +P I++
Sbjct: 47 LAIICGERQ--------LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 311
A++ AG VV++ S E+ ++ + K + + ++S L
Sbjct: 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSR-------QHEVFSNNQFIDSLHD 151
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
V + + + + D D++ + P + P D V S G+TG P
Sbjct: 152 -VNLSPEIILMLNHQATDFGLLDWIET----PAETFVDFSSTPADEVAFFQLSGGSTGTP 206
Query: 372 KAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGAT 424
K IP T S+R +AE L N G
Sbjct: 207 KLIPRTHNDYDYSVRASAEIC---GLNSNTRLLCALPAPHNFMLSSP--GALGVLHAGGC 261
Query: 425 LALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472
+ + P F +Q V + VPS V W LE K
Sbjct: 262 VVMAPNPEP-LNCF-SIIQRHQVNMASLVPSAVIMW-----LEKAAQYK 303
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 5e-11
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGG 652
GD+++RT G + V GR D +N GG K +S EIE++ ++ A +++ G
Sbjct: 421 GDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLI-LLHPEVMHAALVAIVDEQFG- 478
Query: 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRR 711
E F+V + L+ + ++ +K+ +K++ P TA K+ ++
Sbjct: 479 -EKSCAFIVSRNPELKAVV-LRRHLMELGIAQ----YKLPDQIKLIESLPLTAVGKVDKK 532
Query: 712 VLRDQIKHELS 722
LR + +
Sbjct: 533 QLRSILNTSTT 543
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 1e-21
Identities = 102/572 (17%), Positives = 170/572 (29%), Gaps = 132/572 (23%)
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
L + A+ + E +TY EL A + +A+
Sbjct: 28 LSPAPTGAPADRPALRFGERS--------LTYAELAAAAGATAGRI----GGAGRVAVWA 75
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFILRGGRKFPL 299
+ + +A +LAG V + +E+A L S + D L
Sbjct: 76 TPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPA----- 130
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
LGA + + A G + D +
Sbjct: 131 ----LGALERVDVDVRARGAVPEDGADDGDPAL--------------------------- 159
Query: 360 NILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNL----GWVMGP 412
++++SGTTG PK + +++ A+ W DV L G V+G
Sbjct: 160 -VVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLG- 214
Query: 413 VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL---D 469
+ G ++ E + + + G T+L VP++ T +
Sbjct: 215 --ILGPLRRGGSVRHLGRFSTEGAAREL--NDGATMLFGVPTMYHRIAETLPADPELAKA 270
Query: 470 WTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFS 528
R S + + A +IE G TE + +P+A G
Sbjct: 271 LAGARLLVSGS--AALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRA-G--- 324
Query: 529 TATMTAGLV-------ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG 581
T G+ +++E G P VG E+ RG
Sbjct: 325 ----TVGVPLPGVELRLVEEDGTPIAALDG--ESVG------------------EIQVRG 360
Query: 582 ---MPMYKGM------CLRRHG-----DIIKRTVGGYIIVQGRAD-DTMNLGGIKTSSVE 626
Y G D+ R GY+ + GR D + GG K + E
Sbjct: 361 PNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGE 420
Query: 627 IERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKK-GFTSQPDKLKMIFSKAIQSK 684
IE + E A P G E +V ++V L + ++
Sbjct: 421 IENALL-EHPEVREAAVTGEPDPDLG--ERIVAWIVPADPAAPPALGTLA----DHVAAR 473
Query: 685 LNPLFKV-SLVKVVPEFPRTASNKLLRRVLRD 715
L P K +V+ + PR K+++R L
Sbjct: 474 LAP-HKRPRVVRYLDAVPRNDMGKIMKRALNR 504
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 7e-21
Identities = 58/337 (17%), Positives = 125/337 (37%), Gaps = 60/337 (17%)
Query: 160 KSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQV 219
+SK ++P + L + L + + ++ + + ++ TY ++
Sbjct: 10 RSKLPDIYIPKN-LPLHSYVL---ENLSNHSSKPCLI------NGANGDVYTYADVELTA 59
Query: 220 MLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278
VA+ L+ + +GD I + +P + V+ +L G ++ + E+A +
Sbjct: 60 RRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKA 119
Query: 279 SKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIPLREQDLSWKDF 335
S+AK + TQ Y KV A +K + + + + L + +
Sbjct: 120 SRAKLLITQA---------CYYEKVKDFARESDVKVMCVDSAPDGC--------LHFSEL 162
Query: 336 LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWA-H 391
+ + +P D V + +SSGTTG PK + T ++S+ +G +
Sbjct: 163 TQADENEAPQ----VDISPDDVVA-LPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPN 217
Query: 392 IDLKVGDVYCWPTNLGW-----VMG-PVILFSSFLNGATLALYQGSPLER----SFGKFV 441
+ DV L + I+ GA + + + + S +
Sbjct: 218 LYFHSEDVI-----LCVLPMFHIYALNSIMLCGLRVGAPILI-----MPKFEIGSLLGLI 267
Query: 442 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+ V++ VP ++ + + L+ D + +R S
Sbjct: 268 EKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKS 304
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 636 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLV 694
I + A + + G EV V FVV + + D++K + I ++ ++ V
Sbjct: 457 PEISDAAVVGLKDEDAG--EVPVAFVVKSEKSQATEDEIK----QYISKQVIFYKRIKRV 510
Query: 695 KVVPEFPRTASNKLLRRVLRDQIK 718
+ P+ S K+LR+ L++++
Sbjct: 511 FFIEAIPKAPSGKILRKNLKEKLA 534
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 4e-18
Identities = 53/305 (17%), Positives = 93/305 (30%), Gaps = 51/305 (16%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
+ + + +AI ++Y EL + VAN L GD +A +
Sbjct: 11 DKLDDPHKLAIETAAGDK-------ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
V A+++YLA + AG V + + ++ E+ + ++ K + K + +
Sbjct: 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDP------SKRDGIAAI 117
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
L G S D + D + IL+
Sbjct: 118 AAKVGATVETLGPDG----------RGSLTDAAAGASEAFATIDRGA-----DDLAAILY 162
Query: 364 SSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNL----GWVMGPVILF 416
+SGTTG K + S+ + W DV + G +
Sbjct: 163 TSGTTGRSKGAMLSHDNLASNSLTLVDYW---RFTPDDVLIHALPIYHTHGLFVA---SN 216
Query: 417 SSFLNGATLALYQGSPLERSF--GKFVQD-AGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473
+ ++ F K + A TVL VP+ + L +
Sbjct: 217 VTLFARGSMI------FLPKFDPDKILDLMARATVLMGVPTFYTRLLQSPRLTKETTGHM 270
Query: 474 RSFAS 478
R F S
Sbjct: 271 RLFIS 275
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 3e-10
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 10/128 (7%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGG 652
GD+ K GY+ + GR D + GG EIE D ++E+A I V G
Sbjct: 381 GDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDA-MPGVVESAVIGVPHADFG- 438
Query: 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRR 711
E + VV KG T ++ + +L FK+ V V + PR K+ +
Sbjct: 439 -EGVTAVVVRDKGATIDEAQVL----HGLDGQLAK-FKMPKKVIFVDDLPRNTMGKVQKN 492
Query: 712 VLRDQIKH 719
VLR+ K
Sbjct: 493 VLRETYKD 500
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 9e-14
Identities = 45/252 (17%), Positives = 81/252 (32%), Gaps = 37/252 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ELR +V VA L +A+ P + VI LA+ G V +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ E+A ++ + + + + I+ + +
Sbjct: 90 SAELAELIKRGEMTAAVIAV-------GRQVADAIFQSGSGARIIFLG-----DLVRDGE 137
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
S+ + P I ++SGTTG PKA Q ++
Sbjct: 138 PYSYGPPIEDPQREP------------AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 389 WAHIDLKVG--DVYCWPTNL----GWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFV 441
+ L+ G +V L G+ L ++ T + + P++ + V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAV---LVAALALDGTYVVVEEFRPVD--ALQLV 240
Query: 442 QDAGVTVLGTVP 453
Q VT L P
Sbjct: 241 QQEQVTSLFATP 252
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653
D+ T G + + GR DD + GG EIERV A + E I +
Sbjct: 384 SDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTA-PGVTEVVVIGL------A 436
Query: 654 -----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNK 707
+ + VV + G T D L F ++ S+L FK ++ + P+ A NK
Sbjct: 437 DQRWGQSVTACVVPRLGETLSADALDT-FCRS--SELAD-FKRPKRYFILDQLPKNALNK 492
Query: 708 LLRRVLRDQ 716
+LRR L Q
Sbjct: 493 VLRRQLVQQ 501
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 5e-12
Identities = 74/477 (15%), Positives = 136/477 (28%), Gaps = 167/477 (35%)
Query: 10 VEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIW------RELVARKVLKPWHPHGL 63
V+D+ K L EE D I+ + S L R W E+V + V +
Sbjct: 38 VQDMPKSILS---KEEIDHIIMSKDAVSGTL--RLFWTLLSKQEEMVQKFV------EEV 86
Query: 64 HQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRL 123
++ Y + + + P S+ + R Y D ++
Sbjct: 87 LRINYKFLMSPIKTEQRQP------SMMTRMYIEQRD-----------RLYNDN----QV 125
Query: 124 FQKFTVEHPEAYWEI--ALKEISVVFREAPKCILDRTDKSKHG--G---TWLPGSV---- 172
F K+ V + Y ++ AL E+ R A ++ G G TW+ V
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL----RPAKNVLI-------DGVLGSGKTWVALDVCLSY 174
Query: 173 ------------LNIAECC--------------LLPSNHRRKEDNTVAIVWREDRCDESA 206
LN+ C + N + D++ I R
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 207 VNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP----MTVRAVIIYLAIILAGYVVVS 262
L+ K +LV L + + A ++ +T R
Sbjct: 235 RRLLKSKPYEN-CLLV---LLNVQNAKAWNAFNLSCKILLTTRF--------------KQ 276
Query: 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLP--AIGND 320
+ D +A T + + T D + L K L P LP +
Sbjct: 277 VTDFLSA-ATTTHISLDHHSMTLTPDEVKS------LLLKYLDCRPQD---LPREVLT-- 324
Query: 321 VGIPL---------REQDLSWKDFL------------SSVDYHPRPNYYSPVYN-----P 354
P R+ +W ++ SS++ P Y +++ P
Sbjct: 325 -TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFP 382
Query: 355 VDA-----VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----------HIDLKV 396
A ++++++ + + E +++LKV
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKV 437
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 50/261 (19%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY E+ ++ + L + GD +A R + Y A+ G V+ + +
Sbjct: 48 TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLS 107
Query: 269 AREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLR 326
+EIA L ++ K + + + PL + G ++ V +
Sbjct: 108 PKEIAYILNHAEDKVLLFDPNLL-------PLVEAIRGELKTVQHFV------VMDEKAP 154
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSI 382
E L++++ L R P A + +++GTTG PK + ++ L S+
Sbjct: 155 EGYLAYEEALGEEADPVRV--------PERAACGMAYTTGTTGLPKGVVYSHRALVLHSL 206
Query: 383 R-CTAEGWAHIDLKVGDVYCWPT-----NLGWVMGPVILFSSFLNGATLAL----YQGSP 432
+G A L DV N W + P +++ L GA L +
Sbjct: 207 AASLVDGTA---LSEKDVVLPVVPMFHVN-AWCL-P---YAATLVGAKQVLPGPRLDPAS 258
Query: 433 LERSFGKFVQDAGVTVLGTVP 453
L GVT VP
Sbjct: 259 LVE----LFDGEGVTFTAGVP 275
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 1e-04
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 28/136 (20%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKT-----SSVEIERVCDQADESILETAAISVSP 648
GDI GY+ ++ R D IK+ SSV++E + E A +++
Sbjct: 417 GDIAVWDEEGYVEIKDRLKDL-----IKSGGEWISSVDLENAL-MGHPKVKEAAVVAI-- 468
Query: 649 AGGGP-----EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPR 702
P E + VV + + + + + +++ E PR
Sbjct: 469 ----PHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGF-----AKWQLPDAYVFAEEIPR 519
Query: 703 TASNKLLRRVLRDQIK 718
T++ K L+R LR+Q K
Sbjct: 520 TSAGKFLKRALREQYK 535
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 10/122 (8%)
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL--ETAAISVSPAGGGPEVLVI 658
+ V GR D + + G +IE + + + AA + L +
Sbjct: 447 HENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHE--YKLTV 504
Query: 659 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP----EFPRTASNKLLRRVLR 714
+K F + + I + ++ + +V P T S K+ R R
Sbjct: 505 MCEVKNRFMDDVAQDNLF--NEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCR 562
Query: 715 DQ 716
Sbjct: 563 KH 564
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 30/209 (14%), Positives = 71/209 (33%), Gaps = 37/209 (17%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
N + + +E+ MTY++L + +A L GD + + + +
Sbjct: 26 NKKSCTFLNKELEET----MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQA 81
Query: 250 YLAIILAGYVVVSIA----DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
+L + AG + V I + + + SK + ++ + L
Sbjct: 82 FLGCLYAGCIAVPIYPPAQEKLLDK-AQRIVTNSKPVIVLMIADHIKK-----FTADELN 135
Query: 306 AAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365
P K + +PAI + S++ + ++ + + + ++S
Sbjct: 136 TNP-KFLKIPAIALE-----------------SIELNRSSSWQPTSIKS-NDIAFLQYTS 176
Query: 366 GTTGEPKAIPWTQ---LSSIRCTAEGWAH 391
G+T PK + + L ++ +
Sbjct: 177 GSTMHPKGVMVSHHNLLDNLNKIFTSFHM 205
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 38/250 (15%), Positives = 76/250 (30%), Gaps = 40/250 (16%)
Query: 191 NTVAIVWREDRCD-ESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVII 249
+ A + + D + +T+ +L + + VA L S GD + I P + V+
Sbjct: 39 HDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGLEYVVA 98
Query: 250 YLAIILAGYVVVSIA--DSFAARE-IATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA 306
+L + AG + V ++ E + L S I T + + ++ G
Sbjct: 99 FLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH--VARRPGE 156
Query: 307 APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
+P I + + D + + ++SG
Sbjct: 157 SPPSIIEVDLLDLDAP-------------NGYTFKEDEY----------PSTAYLQYTSG 193
Query: 367 TTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW-----VMGPV-ILFS 417
+T P + + + G+ + + W MG V + +
Sbjct: 194 STRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPN--SALVSWLPFYHDMGLVIGICA 251
Query: 418 SFLNGATLAL 427
L G L
Sbjct: 252 PILGGYPAVL 261
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 76/400 (19%), Positives = 132/400 (33%), Gaps = 94/400 (23%)
Query: 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI----DLKVGDVYCWPTNLGWV 409
P + VV + SSGTTG+P + +T I A A + GD G
Sbjct: 90 PREQVVRVHASSGTTGKPTVVGYTA-RDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLF 148
Query: 410 MGPVILFSSFLN-GATLALYQGSPLERSFGKFVQDAGVTVLGTVPS----LVKAWRNTNC 464
G + + G + G E+ + ++D ++ PS L+
Sbjct: 149 TGGLGIHYGAERLGCMVVPMSGGQTEKQV-QLIRDFEPKIILVTPSYMLNLIDEMVR--- 204
Query: 465 LEGLDW--TKIRSFASTGETSNVDDDLWLSSKAWYNAI---IESCGGTELSSAYIQGSLL 519
+G+D + ++ E W A+ +E+ G + Y ++
Sbjct: 205 -QGMDPAESSLKIGIFGAE-------------PWTQALRNEVETRVGIDALDIYGLSEVM 250
Query: 520 QPQAFGAFSTATMTAGLV---------ILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRL 569
P A G V I+D G PD G G
Sbjct: 251 GP--GVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPD-----GSQG------------ 291
Query: 570 LNADHEEVY----FRGMPMYKGMCLR-RHGDIIK---------RTVGGYIIVQGRADDTM 615
E V+ MP+ +R R D+ R + + GR+DD +
Sbjct: 292 -----ELVFTSLTKEAMPV-----IRYRTRDLTALLPPTARAMRRLAK---ITGRSDDML 338
Query: 616 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 675
+ G+ +IE + + I++S G + + + + S D +
Sbjct: 339 IVRGVNVFPSQIEEIVVALPL-LSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERA 397
Query: 676 IFSKAIQSKLNPLFKVSL-VKVVP--EFPRTASNKLLRRV 712
++ +Q ++ + VS V V+ P TA+ K RRV
Sbjct: 398 ALARELQHRIKTMVGVSSGVTVLAAGGIPATATGK-ARRV 436
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 75/388 (19%), Positives = 125/388 (32%), Gaps = 89/388 (22%)
Query: 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI----DLKVGDVYCWPTNLGWV 409
P D + I SSGTTG+P + +T + I A A + GD G
Sbjct: 88 PQDRISRIHASSGTTGKPTVVGYTA-ADIDTWANLVARSIRAAGARRGDKVHVSYGYGLF 146
Query: 410 MGPVILFSSFLN-GATLALYQGSPLERSFGKFVQDAGVTVLGTVPS----LVKAWRNTNC 464
G + G T+ + G E+ + +QD ++ PS +
Sbjct: 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQV-QLIQDFRPDIIMVTPSYMLSIADEIER--- 202
Query: 465 LEGLDW--TKIRSFASTGETSNVDDDLWLSSKAWYNAI---IESCGGTELSSAYIQGSLL 519
+GLD + +R E W N + IE G + Y ++
Sbjct: 203 -QGLDPVQSSLRIGIFGAE-------------PWTNDMRVAIEQRMGIDAVDIYGLSEVM 248
Query: 520 QPQAFGAFSTATMTAGLVILDEC----------GVPYPDDQPCVGEVGLFPLYLGASDRL 569
P A G I ++ G PD GE+G
Sbjct: 249 GPGV--ASECVETKDGPTIWEDHFYPEIIDPETGEVLPD-----GELG------------ 289
Query: 570 LNADHEEVY----FRGMPMYKGMCLR-RHGDIIK------RTVGGYIIVQGRADDTMNLG 618
E V+ +P+ +R R D+ + RT+ + GR+DD M +
Sbjct: 290 -----ELVFTSLTKEALPI-----IRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVR 339
Query: 619 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFS 678
G+ +IE + L V G +VL + V +++
Sbjct: 340 GVNVFPTQIEEQLLKQRA--LAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVA-K 396
Query: 679 KAIQSKLNPLFKVSL-VKVVP--EFPRT 703
+A+ + L V+ + V+P R+
Sbjct: 397 QALAYDIKSLIGVTAVINVLPVNGIERS 424
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 727 | |||
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.97 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.61 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.58 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.87 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.8 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.77 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 98.37 | |
| 4hvm_A | 493 | Tlmii; PSI-biology, midwest center for structural | 97.87 | |
| 1l5a_A | 436 | Amide synthase, VIBH; nonribosomal peptide synthet | 97.7 | |
| 2xhg_A | 466 | Tyrocidine synthetase A; isomerase, nonribosomal p | 95.84 | |
| 1q9j_A | 422 | PAPA5, polyketide synthase associated protein 5; c | 89.74 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 85.66 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 84.55 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 83.79 |
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-92 Score=872.91 Aligned_cols=632 Identities=16% Similarity=0.167 Sum_probs=507.1
Q ss_pred HHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCC---------
Q 004860 13 LMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--------- 82 (727)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~--------- 82 (727)
++-+++..++..+|.++|+++.+. +++++||++||++ |++.++ ..|+ |++|+++++.....
T Consensus 301 tlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~-i~~~l~------~~~l--f~~~~~~~~~~~~~~~~~~~~~~ 371 (1304)
T 2vsq_A 301 VVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYD-IQSQAD------QPKL--IDHIIVFENYPLQDAKNEESSEN 371 (1304)
T ss_dssp EEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHH-HHHSSS------CSSS--CCCEEEECSSCHHHHSCCCHHHH
T ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHH-HHHHhC------CCcc--cceeEEEeecccccccccccccC
Confidence 445566667777888888888888 9999999999999 999885 2344 66777766532100
Q ss_pred CccccCCh-hhhcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeee--ecCC
Q 004860 83 PLYWFPSL-DQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRT 158 (727)
Q Consensus 83 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~ 158 (727)
.....+.. ....+||+++.+.. ++++...+ |++ ++|++.+++++.++|.++|+++..+++.+...+ ++..
T Consensus 372 g~~~~~~~~~~~~~~dL~l~~~~-~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~~~ 445 (1304)
T 2vsq_A 372 GFDMVDVHVFEKSNYDLNLMASP-GDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVDDR 445 (1304)
T ss_dssp SEEEEEEEECCCCCSSEEEEEEC-SSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCCHH
T ss_pred CceeEeeecccccccCeEEEEec-CCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHhccCccccccccCCCCHH
Confidence 11010000 13467788776543 45677777 998 999999999999999999999988887776654 3433
Q ss_pred CCCCCCCCcCCCCcccHhhhhccC--CCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCE
Q 004860 159 DKSKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235 (727)
Q Consensus 159 ~~~~~~~~w~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~ 235 (727)
++...+..|+.+...... .+++. ..+++++||++|+++.++ ++||+||+++++++|++|++. +++|++
T Consensus 446 e~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~ 516 (1304)
T 2vsq_A 446 EREFLLTGLNPPAQAHET-KPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKGSV 516 (1304)
T ss_dssp HHHHHHTTTSCCCCCCCC-CCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred HHHHHHHhcCCCCCCCCC-CCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCcCE
Confidence 333345567765443322 23332 335689999999998877 999999999999999999999 999999
Q ss_pred EEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEc
Q 004860 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLP 315 (727)
Q Consensus 236 Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 315 (727)
|+|+++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++.........++. ....+++.
T Consensus 517 V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~--------~~~~~~~~ 588 (1304)
T 2vsq_A 517 VALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY--------TGTTLFID 588 (1304)
T ss_dssp EEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCC--------CSEEEESS
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCC--------CCcEEEec
Confidence 9999999999999999999999999999999999999999999999999998754321111110 01111111
Q ss_pred CCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCC
Q 004860 316 AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK 395 (727)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~ 395 (727)
. . ... ... ...+.....++++|||+|||||||+||||+++|+++++. .+....++++
T Consensus 589 ~------------~---~~~-~~~------~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~ 645 (1304)
T 2vsq_A 589 D------------Q---TRF-EEQ------ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFS 645 (1304)
T ss_dssp C------------G---GGG-GSC------SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCC
T ss_pred c------------c---ccc-ccc------cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCC
Confidence 0 0 000 000 011123456899999999999999999999999999877 5566778999
Q ss_pred CCCEEEEecccccccchHHhHHhhhcCcEEEEecC--CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccce
Q 004860 396 VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473 (727)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~L 473 (727)
++|+++++++++|+.+.+++|.+|+.|+++++.+. ..++..+.+.|++++||++.++|++++.|.+.. ...+++|
T Consensus 646 ~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~l 722 (1304)
T 2vsq_A 646 DQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGL 722 (1304)
T ss_dssp TTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCc
Confidence 99999999999999999999999999999999875 347889999999999999999999999998753 2246899
Q ss_pred eEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCC---CCccccccccCCCCceEEEECCCCCcCCCCC
Q 004860 474 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVPYPDDQ 550 (727)
Q Consensus 474 r~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~ 550 (727)
|.+++|||+++++..+.+.+.+++++++|.||+||++++++..... ......++|+|++|++++|+|++++++|.|+
T Consensus 723 r~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~ 802 (1304)
T 2vsq_A 723 RCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGA 802 (1304)
T ss_dssp SEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTC
T ss_pred cEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCC
Confidence 9999999999999988888777778999999999999765543221 2234568999999999999999999999999
Q ss_pred CeeeeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechH
Q 004860 551 PCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625 (727)
Q Consensus 551 ~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~ 625 (727)
. |||+| +.||++ +++.|+++|..+|+.+|.+||||||+|+|++||+|+|+||+|||||++|+||+|+
T Consensus 803 ~--GEl~i~G~~v~~GY~~------~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~ 874 (1304)
T 2vsq_A 803 V--GELCISGMGVSKGYVN------RADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELE 874 (1304)
T ss_dssp C--EEEEEEETTCCCCBTT------CHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHH
T ss_pred c--eEEEEeccccCccccC------CcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHH
Confidence 6 99998 467776 4458899999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCC
Q 004860 626 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS 705 (727)
Q Consensus 626 eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~ 705 (727)
|||++|. +||+|.+|+|++.++...+ +.++|||+.+. ..+.++++ ++|+++||.||+|+.|+++++||+|+|
T Consensus 875 eIE~~l~-~~p~V~~a~V~~~~~~~~~-~~l~a~vv~~~--~~~~~~l~----~~l~~~Lp~ymvP~~~~~l~~lP~t~~ 946 (1304)
T 2vsq_A 875 EIEKQLQ-EYPGVKDAVVVADRHESGD-ASINAYLVNRT--QLSAEDVK----AHLKKQLPAYMVPQTFTFLDELPLTTN 946 (1304)
T ss_dssp HHHHHHH-HSSSCCEEEEEEECCSSSC-CEEEEEEECSS--SSCHHHHH----HHHHHHSCGGGSCSEEEEESCCCCCSS
T ss_pred HHHHHHH-hCCCCceEEEEEEecCCCC-EEEEEEEeCCC--CCCHHHHH----HHHHHhChHhhhccEEEEecccCCCCC
Confidence 9999995 9999999999999887777 89999999765 34545554 457788999999999999999999999
Q ss_pred chhhHHHHHHHHh
Q 004860 706 NKLLRRVLRDQIK 718 (727)
Q Consensus 706 GKvdR~~L~~~~~ 718 (727)
|||||++|++...
T Consensus 947 GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 947 GKVNKRLLPKPDQ 959 (1304)
T ss_dssp CSSCCSCCCCCCG
T ss_pred cccCHhhcCCcch
Confidence 9999999986543
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-86 Score=762.66 Aligned_cols=581 Identities=25% Similarity=0.374 Sum_probs=472.1
Q ss_pred CHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCC-CCCCCCcCCCCcccHhhhhccCCCCCCCCCCceEEEEe
Q 004860 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (727)
Q Consensus 120 ~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (727)
+|..+.+++++++..||..+++. +.|.+++.++++.... ..+..+||.++..|.+.+++++++ +++||++|+++.
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~pd~~Al~~~ 98 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAIIWE 98 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccccCCCCCEECCCCChhHHHHHHHHHh--ccCCCceEEEEE
Confidence 45778899999999999999885 5788888888754321 133568999999999999998765 578999999986
Q ss_pred cCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHH
Q 004860 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (727)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~ 277 (727)
+. ..+..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 99 ~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~ 176 (652)
T 1pg4_A 99 GD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCII 176 (652)
T ss_dssp CS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHH
T ss_pred cC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Confidence 43 123346899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEEeecccccCCccccchHHHhhh---CC----CcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCC
Q 004860 278 VSKAKGIFTQDFILRGGRKFPLYSKVLGA---AP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350 (727)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~---~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (727)
++++++||+++...+.++.++....+.+. .+ ..++++......... ......+|++++..... ....
T Consensus 177 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~ 250 (652)
T 1pg4_A 177 DSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQP 250 (652)
T ss_dssp HHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCC
T ss_pred hcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCc
Confidence 99999999998877666655544443322 21 234444432211111 11234568877654321 1122
Q ss_pred ccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHH-hhchhcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEEEe
Q 004860 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (727)
Q Consensus 351 ~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~~ 428 (727)
....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.+|++|+++. +.++.+|++|++++++
T Consensus 251 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 251 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred cccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 344679999999999999999999999999876654 44456899999999999999999998 7789999999999999
Q ss_pred cCC---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCC--CCccc
Q 004860 429 QGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501 (727)
Q Consensus 429 ~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~--~~~l~ 501 (727)
++. +++..+++.|+++++|+++++|++++.|.+... ....++++||.+++|||++++++.+++.+.++ +++++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~ 410 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEE
Confidence 763 478899999999999999999999999988643 34567899999999999999999999988764 37899
Q ss_pred ccccccccccccccCCC-CCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCcccccc-ccccccc
Q 004860 502 ESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNA-DHEEVYF 579 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~-~~~~~~f 579 (727)
|.||+||++++++...+ ..+...+++|+|++|++++|+|++|+++|.|+. |||+|...+.+...+|++. +.+...|
T Consensus 411 ~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~--GEl~i~g~~p~~~~gY~~~~e~~~~~~ 488 (652)
T 1pg4_A 411 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERFEQTY 488 (652)
T ss_dssp EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHHHHHH
T ss_pred ccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCce--EEEEEccCCCchhhhhcCCHHHHHhhh
Confidence 99999999976555433 234566899999999999999999999999985 9999944222222233333 2232222
Q ss_pred cccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEE
Q 004860 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (727)
Q Consensus 580 ~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~ 659 (727)
. ....+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.++||
T Consensus 489 ~----~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a~ 562 (652)
T 1pg4_A 489 F----STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAY 562 (652)
T ss_dssp H----SSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEEE
T ss_pred h----hcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEEE
Confidence 1 111239999999999999999999999999999999999999999996 9999999999999998887 999999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhh
Q 004860 660 VVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721 (727)
Q Consensus 660 vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 721 (727)
|+++++...+ +++.+.|+++++++||+||+|+.|+++++||+|+||||+|++|++++.+++
T Consensus 563 Vv~~~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 623 (652)
T 1pg4_A 563 VTLNHGEEPS-PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 623 (652)
T ss_dssp EEECTTCCCC-HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred EEECCCCCCC-HHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence 9998876544 456778888899999999999999999999999999999999999998753
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-86 Score=761.69 Aligned_cols=588 Identities=23% Similarity=0.363 Sum_probs=470.0
Q ss_pred cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCC---C-CCCCCCCcCCCCcccHhhhhccCCCCCCCC
Q 004860 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT---D-KSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189 (727)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~-~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~ 189 (727)
+...+.+|..+++++++++..||..+++.. +.|.+++.++++.. . ...+..+||.++..|.+++++++++ +++
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~ 95 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKT 95 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTC
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHh--ccC
Confidence 445566789999999999999999998852 57999999988754 2 1233369999999999999998765 679
Q ss_pred CCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCC
Q 004860 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267 (727)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~ 267 (727)
||++|+++.+. ..+..+++||+||+++++++|+.|+ ++ |++||+|+|+++|++++++++|||+++|++++|++|.+
T Consensus 96 pd~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~ 173 (663)
T 1ry2_A 96 PNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173 (663)
T ss_dssp TTSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred CCceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCC
Confidence 99999998643 1234468999999999999999999 88 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhC---C--CcEEEEcCCCC-CCCCCCCcCcccHHHHhcccCC
Q 004860 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---P--LKAIVLPAIGN-DVGIPLREQDLSWKDFLSSVDY 341 (727)
Q Consensus 268 ~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~--~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (727)
+.+++.++|+++++++||+++...++++.++....+.+.. + ..++++..... .... ......+|.+++.....
T Consensus 174 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 252 (663)
T 1ry2_A 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF-HAPRDLDWATEKKKYKT 252 (663)
T ss_dssp CHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-CSSSEEEHHHHHTTSCS
T ss_pred CHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcccc-CCCccccHHHHHhhcCC
Confidence 9999999999999999999998777666666554443332 2 23444443221 1110 11234568877654321
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHH-hhchhcCCCCCCEEEEecccccccch-HHhHHhh
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l 419 (727)
..+.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.++++|+++. +.++.+|
T Consensus 253 -----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L 327 (663)
T 1ry2_A 253 -----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL 327 (663)
T ss_dssp -----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHH
T ss_pred -----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHH
Confidence 1223345679999999999999999999999999876654 34456899999999999999999998 7789999
Q ss_pred hcCcEEEEecCC---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhh
Q 004860 420 LNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (727)
Q Consensus 420 ~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~ 494 (727)
+.|++++++++. +++..+++.|++++||+++++|++++.|.+... ....++++||.+++|||++++++.+++.+.
T Consensus 328 ~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 407 (663)
T 1ry2_A 328 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407 (663)
T ss_dssp HHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred HhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence 999999999763 478899999999999999999999999987654 345678999999999999999999999887
Q ss_pred CC--CCcccccccccccccccccCCC--CCCccccccccCCCCceEEEECC-CCCcCCC-CCCeeeeEEEecccCCCCcc
Q 004860 495 AW--YNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDE-CGVPYPD-DQPCVGEVGLFPLYLGASDR 568 (727)
Q Consensus 495 ~~--~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~-G~~giGel~v~~~y~~~~~~ 568 (727)
++ .++++|.||+||++++++.... ..+...+++|+|++|++++|+|+ +|+++|. |+. |||+|...+.+...+
T Consensus 408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~--Gel~i~g~~p~~~~g 485 (663)
T 1ry2_A 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAE--GVLAVKAAWPSFART 485 (663)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCE--EEEEESSCCTTSCCE
T ss_pred hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcc--eEEEEecCCCchhcc
Confidence 64 3889999999999876555433 23456789999999999999998 8999988 874 999994322222223
Q ss_pred cccc-ccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeec
Q 004860 569 LLNA-DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647 (727)
Q Consensus 569 ~~~~-~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~ 647 (727)
|+++ +.+...|... .+| ||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+
T Consensus 486 y~~~~~~~~~~~~~~--~~g--~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~ 560 (663)
T 1ry2_A 486 IWKNHDRYLDTYLNP--YPG--YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFN 560 (663)
T ss_dssp ETTCHHHHHHHHTSS--STT--SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCC
T ss_pred cccChHHHHHhhhcC--CCC--EEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEe
Confidence 3332 2333322110 123 9999999999999999999999999999999999999999996 99999999999999
Q ss_pred CCCCCceEEEEEEEecCCCC---CChH---HHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 648 PAGGGPEVLVIFVVLKKGFT---SQPD---KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 648 ~~~~~~~~l~a~vv~~~~~~---~~~~---~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
++..| +.++|||+++++.. ...+ ++.+.|+++++++|++||+|+.|+++++||+|+||||+|++|++++.++
T Consensus 561 ~~~~g-~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 561 DDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCTTS-CCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred cCCCC-eEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 88777 89999999987643 2112 4677888889999999999999999999999999999999999988765
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-80 Score=703.79 Aligned_cols=521 Identities=19% Similarity=0.206 Sum_probs=407.8
Q ss_pred CCcCCCCcccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC
Q 004860 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243 (727)
Q Consensus 165 ~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s 243 (727)
..|......|.+..++++++ +++||++|+++.+. .+..+++||+||+++++++|++|+++ +++||+|+|+++|+
T Consensus 47 ~~~~~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~~---~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~ 121 (580)
T 3etc_A 47 FKILVPENFNFAYDVVDVYA--RDSPEKLAMIWCDD---YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSR 121 (580)
T ss_dssp CCBCCCSSCCHHHHTHHHHH--HHCTTCEEEEEEES---SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTC
T ss_pred CCCCCcccchHHHHHHHHHH--hhCCCCEEEEEEcC---CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC
Confidence 35776777788877777665 68999999998643 13346899999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC---CcEEEEcCCCCC
Q 004860 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGND 320 (727)
Q Consensus 244 ~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~ 320 (727)
+++++++|||+|+|++++|++|.++.+++.+++++++++++|++.... ............+ ...+.+...
T Consensus 122 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--- 194 (580)
T 3etc_A 122 YDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD--- 194 (580)
T ss_dssp THHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS---
T ss_pred HHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc---
Confidence 999999999999999999999999999999999999999999987531 0011222222222 233333211
Q ss_pred CCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEE
Q 004860 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVY 400 (727)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~ 400 (727)
...+..++.+.+....... ..........+++++||+|||||||.||||+++|.++++.+......+++.+++++
T Consensus 195 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (580)
T 3etc_A 195 ----VLEGWIDFRKELEESSPIF-ERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLH 269 (580)
T ss_dssp ----CCTTCEEHHHHHHHSCSCC-CCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEE
T ss_pred ----cccccccHHHHHhhCCccc-ccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceE
Confidence 1123455666655433210 00111134578999999999999999999999999988887776667789999999
Q ss_pred EEecccccccchHH-hHHhhhcCcEEEEec-CCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEe
Q 004860 401 CWPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (727)
Q Consensus 401 l~~~~~~~~~~~~~-~~~~l~~G~~lv~~~-~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~ 478 (727)
++.++++|+.+.+. ++.++..|+++++.+ ..+++..+++.|+++++|+++++|++++.|.+.. ....++++||.+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~ 348 (580)
T 3etc_A 270 YTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVV 348 (580)
T ss_dssp EECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEE
T ss_pred EEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEE
Confidence 99999999998875 788999999999885 4568899999999999999999999999998863 44567899999999
Q ss_pred ecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE
Q 004860 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (727)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v 558 (727)
|||++++++.+++.+.+ +++++|.||+||+++.++... ......+++|+|++|++++|+|++|+++|.|+. |||+|
T Consensus 349 gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v 424 (580)
T 3etc_A 349 AGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFP-WMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVI 424 (580)
T ss_dssp CSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCT-TSCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEE
T ss_pred ccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCC-CCCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEE
Confidence 99999999999888765 689999999999987554433 334566899999999999999999999999996 99999
Q ss_pred ec------ccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHh
Q 004860 559 FP------LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (727)
Q Consensus 559 ~~------~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (727)
.. +.+. .++.+++.|++.|.+ +||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.
T Consensus 425 ~~~~g~~~~~~~--gY~~~p~~t~~~f~~-------gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~ 495 (580)
T 3etc_A 425 NTMEGKPVGLFV--HYGKDPERTEETWHD-------GYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALI 495 (580)
T ss_dssp ECTTCCCTTCCC--EETTCHHHHHHHEET-------TEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHT
T ss_pred ecCCCCCCeeec--cccCCHhHHHhhcCC-------CEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHH
Confidence 52 2211 122244567777742 39999999999999999999999999999999999999999995
Q ss_pred hcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHH
Q 004860 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRV 712 (727)
Q Consensus 633 ~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~ 712 (727)
+||+|.+|+|++.+++..+ +.++|+|+++++...+ +.+.+.|++++++.||+||+|..|+++++||+|+||||+|++
T Consensus 496 -~~p~V~~a~Vvg~~~~~~g-~~~~a~vv~~~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~ 572 (580)
T 3etc_A 496 -QHPAVLECAITGVPDPVRG-QVIKATIVLTKDYTPS-DSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVE 572 (580)
T ss_dssp -TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCC-HHHHHHHHHHHHHHSCGGGCCSEEEEECC-------------
T ss_pred -hCCCeeeEEEEeeeccCCC-cEEEEEEEECCCCCCC-HHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHH
Confidence 9999999999999999888 9999999998876544 567778888999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 004860 713 LRDQIKH 719 (727)
Q Consensus 713 L~~~~~~ 719 (727)
|++++.+
T Consensus 573 Lr~~~~~ 579 (580)
T 3etc_A 573 IRDKDQS 579 (580)
T ss_dssp -------
T ss_pred HHhHhhc
Confidence 9998764
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-79 Score=694.07 Aligned_cols=489 Identities=20% Similarity=0.253 Sum_probs=407.8
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+++++||++|+++.+.+ +++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 31 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 31 NLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp TGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEecc
Confidence 34789999999986321 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
+|.++.+++.+++++++++++|+++... +............++++... ..+...+.++......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 168 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSELTQADEN-- 168 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHHTSCGG--
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHHhhcccc--
Confidence 9999999999999999999999987543 12222222222333333211 1233455555543221
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch----hcCCCCCCEEEEecccccccch-HHhHHh
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (727)
..+.....+++++||+|||||||.||||+++|+++++.+.+... .+++.++|++++.+|++|++++ ..++.+
T Consensus 169 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (536)
T 3ni2_A 169 ---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245 (536)
T ss_dssp ---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHH
T ss_pred ---ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHH
Confidence 12233457899999999999999999999999999887765432 4578899999999999999998 457889
Q ss_pred hhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCC
Q 004860 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (727)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~ 498 (727)
|..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.++++
T Consensus 246 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 324 (536)
T 3ni2_A 246 LRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324 (536)
T ss_dssp HHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred HhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCC
Confidence 99999999986 46788999999999999999999999999988766677899999999999999999999999988889
Q ss_pred cccccccccccccccccCC----CCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCcc
Q 004860 499 AIIESCGGTELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (727)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~ 568 (727)
+++|.||+||++++++.+. .......+++|+|++|++++|+| ++|+++|.|+. |||+| +.||++
T Consensus 325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~---- 398 (536)
T 3ni2_A 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLN---- 398 (536)
T ss_dssp EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT----
T ss_pred CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchhhcC----
Confidence 9999999999986544332 12234567899999999999999 67999999996 99999 456665
Q ss_pred ccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecC
Q 004860 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (727)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~ 648 (727)
+++.|+..|.. .+||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.++
T Consensus 399 --~p~~t~~~~~~------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 469 (536)
T 3ni2_A 399 --DPEATSRTIDK------EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-AHPEISDAAVVGLKD 469 (536)
T ss_dssp --CHHHHHHHBCT------TSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEE
T ss_pred --ChhHHHhhccC------CCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeeec
Confidence 34466666643 349999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhh
Q 004860 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 719 (727)
Q Consensus 649 ~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 719 (727)
+..+ +.++|||+..++...+.+++++ +++++||.||+|..|+++++||+|+||||||++|++++++
T Consensus 470 ~~~g-~~~~a~vv~~~~~~~~~~~l~~----~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 470 EDAG-EVPVAFVVKSEKSQATEDEIKQ----YISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TTTE-EEEEEEEEECTTCCCCHHHHHH----HHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CCCC-ceeEEEEEecCCCCCCHHHHHH----HHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 8888 9999999998876666666555 5778999999999999999999999999999999987753
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-80 Score=707.50 Aligned_cols=466 Identities=19% Similarity=0.174 Sum_probs=385.7
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+|+++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++||||
T Consensus 36 ~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpl 107 (620)
T 4dg8_A 36 MAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYI 107 (620)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 4578999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
||.+|.+++.+++++++++++|+++.........+ .. .+... ..
T Consensus 108 d~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~------------~~------------------~~~~~----~~-- 151 (620)
T 4dg8_A 108 DLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLP------------CV------------------PVRHL----PA-- 151 (620)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTSC------------EE------------------EGGGC----CC--
T ss_pred CccChHHHHHHHHHhCCCcEEEecCcccccccCCc------------ee------------------eeccC----Cc--
Confidence 99999999999999999999997654221100000 00 00000 00
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCc
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (727)
...........++++|||+|||||||+||||+++|+++.+.+.+ ...+++.++|++++.+|++|+.+++++|.+|+.|+
T Consensus 152 ~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 230 (620)
T 4dg8_A 152 APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGG 230 (620)
T ss_dssp CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCC
Confidence 00111222346799999999999999999999999999887766 56788999999999999999999999999999999
Q ss_pred EEEEecC-CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccc
Q 004860 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (727)
Q Consensus 424 ~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (727)
++++.+. ..++..++++|+++++|++.++|++++.|.+.. ..++++||.+++|||+++++..+.+...+++++++|
T Consensus 231 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 307 (620)
T 4dg8_A 231 CCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN 307 (620)
T ss_dssp EEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe
Confidence 9999753 458889999999999999999999999998753 345789999999999999888888877778899999
Q ss_pred cccccccccccccCCC---CCCccccccccCCCCceEEEECCCCCc-CCCCCCeeeeEEE-----ecccCCCCccccccc
Q 004860 503 SCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVP-YPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (727)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~-~p~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (727)
.||+||++++++.... .......++|+|++|++++|+|+++++ +|.|+. |||+| +.||++ +++
T Consensus 308 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~GY~~------~p~ 379 (620)
T 4dg8_A 308 GYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQGYRN------DAA 379 (620)
T ss_dssp EECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSEETT------CHH
T ss_pred eEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccccCC------Chh
Confidence 9999999875543222 122345689999999999999999988 789986 99998 466766 445
Q ss_pred cccccccccccCCCc--eeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCC
Q 004860 574 HEEVYFRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (727)
Q Consensus 574 ~~~~~f~~~p~~~g~--~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~ 651 (727)
.|++.|..+|+ +|. +||||||+|++++||+|+|+||+|||||++|+||+|+|||++|. +||+|.+|+|++.+++..
T Consensus 380 ~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~ 457 (620)
T 4dg8_A 380 RTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR-RQPGILDCALLVRERNGV 457 (620)
T ss_dssp HHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHH-TSTTEEEEEEEEEEETTE
T ss_pred hhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHH-hCCCccEEEEEEEeCCCc
Confidence 78889998884 344 89999999999999999999999999999999999999999996 999999999999887644
Q ss_pred CceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 652 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 652 ~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
..++++++.... .++ +.++++||.||+|..|+++++||+|+||||||++|++.+...
T Consensus 458 --~~lv~~~~~~~~------~~~----~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 458 --KQLLCAWTGKAD------ASP----QALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp --EEEEEEEEECTT------CCC----HHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred --eEEEEEEecChH------HHH----HHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 456666664321 122 246678999999999999999999999999999999887544
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-80 Score=699.91 Aligned_cols=501 Identities=19% Similarity=0.193 Sum_probs=376.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+.....+..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++|||+
T Consensus 29 a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 29 AEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccC
Confidence 47899999999987422233445999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|+++... +.............+++.. ....++.++.......
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-- 170 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDSGSED-- 170 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHHHHSCSC--
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHHhcCccc--
Confidence 999999999999999999999997543 2222233333322222211 1233566665544321
Q ss_pred CCCCCCccCC-CCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCc
Q 004860 345 PNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (727)
Q Consensus 345 ~~~~~~~~~~-~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (727)
....... +++++||+|||||||+||||+++|+++++.+.+....+++.++|++++.+|++|+.++..++.++..|+
T Consensus 171 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~ 247 (549)
T 3g7s_A 171 ---FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGN 247 (549)
T ss_dssp ---CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCC
T ss_pred ---cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCc
Confidence 1112223 489999999999999999999999999999988888899999999999999999999877888999999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCC--CCCccceeEEEeecCCCChhhHHHHHhh----CC-
Q 004860 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFASTGETSNVDDDLWLSSK----AW- 496 (727)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~Lr~i~~gGe~l~~~~~~~~~~~----~~- 496 (727)
++++.+ ..++..+++.|+++++|++.++|+++..|.+..... ..++++||.+++|||++++++.+++.+. ++
T Consensus 248 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~ 326 (549)
T 3g7s_A 248 EYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNN 326 (549)
T ss_dssp EEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSC
T ss_pred eEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCC
Confidence 999987 568899999999999999999999999998754322 2578999999999999999998888776 32
Q ss_pred -CCcccccccccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCccc
Q 004860 497 -YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRL 569 (727)
Q Consensus 497 -~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~ 569 (727)
.++++|.||+||++++++..........+++|+|+++++++|+| ++|+++|.|+. |||+| +.||+++
T Consensus 327 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~~---- 400 (549)
T 3g7s_A 327 PRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKGYWKR---- 400 (549)
T ss_dssp TTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSEETTC----
T ss_pred ccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhhhCCC----
Confidence 37899999999999876666554445678899999999999999 89999999996 99999 4566664
Q ss_pred cccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCC
Q 004860 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649 (727)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~ 649 (727)
++.|++.|..++ +|.+||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++
T Consensus 401 --~~~t~~~f~~~~--~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~ 475 (549)
T 3g7s_A 401 --EKENQECWWYDE--KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLM-KHEAVMDVAVIGKPDE 475 (549)
T ss_dssp --TTGGGTSEEECT--TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHT-TSTTEEEEEEECCCC-
T ss_pred --hhhhhhhhhccC--CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeEcc
Confidence 446777775333 47789999999999999999999999999999999999999999995 9999999999999998
Q ss_pred CCCceEEEEEEEecCC--CCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhccc
Q 004860 650 GGGPEVLVIFVVLKKG--FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVR 724 (727)
Q Consensus 650 ~~~~~~l~a~vv~~~~--~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 724 (727)
..+ +.++|||+++++ ...+.++++ ++++++||+||+|..|+++++||+|+||||||++|+++....-.++
T Consensus 476 ~~g-~~~~a~vv~~~~~~~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~ 547 (549)
T 3g7s_A 476 EAG-EVPKAFIVLKPEYRGKVDEEDII----EWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHHH 547 (549)
T ss_dssp ------CEEEEEECSTTTTSCCHHHHH----HHHHTTCC-----CCCCEEEECC-----------------------
T ss_pred ccC-ceEEEEEEECCCccCcCCHHHHH----HHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcccccc
Confidence 888 899999999876 345555555 4578899999999999999999999999999999999987765544
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-79 Score=681.53 Aligned_cols=485 Identities=21% Similarity=0.217 Sum_probs=402.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+...... .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 a~~~p~~~a~~~~~~~-----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 10 FDKLDDPHKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLN 84 (503)
T ss_dssp HSCCSCTTSEEEEETT-----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCCceEEEecCC-----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecC
Confidence 3678888888753211 02899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|+++.... ....+.......+..+... ....+.+.......
T Consensus 85 ~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~--- 145 (503)
T 4fuq_A 85 TAYTLHELDYFITDAEPKIVVCDPSKRD------GIAAIAAKVGATVETLGPD----------GRGSLTDAAAGASE--- 145 (503)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECGGGTT------TTHHHHHHHTCEEEECCTT----------SCSHHHHHHHTSCS---
T ss_pred CCCCHHHHHHHHHhcCCcEEEECchhhH------HHHHHHhhcCceEEEecCC----------cccccchhhhcCCC---
Confidence 9999999999999999999999876432 2222222222222222111 11122222221111
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchH-HhHHhhhcCc
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGA 423 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~l~~G~ 423 (727)
........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|+++++ .++.+++.|+
T Consensus 146 --~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~ 223 (503)
T 4fuq_A 146 --AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARG 223 (503)
T ss_dssp --CCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTC
T ss_pred --CcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCC
Confidence 1222345679999999999999999999999999999998888889999999999999999999974 4778899999
Q ss_pred EEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccc
Q 004860 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (727)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (727)
++++.+ ..++..+++.++ ++|++.++|+++..|++.......++++||.+++|||+++++..+++...+ +++++|.
T Consensus 224 ~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~ 299 (503)
T 4fuq_A 224 SMIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLER 299 (503)
T ss_dssp EEEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEEC
T ss_pred EEEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccce
Confidence 999987 568889999987 899999999999999988766677789999999999999999998888775 5789999
Q ss_pred ccccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccc
Q 004860 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (727)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~ 577 (727)
||+||+++.++ .........+++|+|++|++++|+| ++|+++|.|+. |||+| +.||++ +++.|++
T Consensus 300 YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t~~ 370 (503)
T 4fuq_A 300 YGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKGYWR------MPEKTKS 370 (503)
T ss_dssp CEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCCBTT------CHHHHHH
T ss_pred EcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhhhcC------ChhhhHh
Confidence 99999987543 3333344567899999999999999 88999999996 99999 456665 4446777
Q ss_pred cccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
.|..+ +||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.++
T Consensus 371 ~f~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 442 (503)
T 4fuq_A 371 EFRDD------GFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID-AMPGVVESAVIGVPHADFG-EGVT 442 (503)
T ss_dssp TBCTT------SCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred hhCCC------CCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeEEEEEEeEchhcC-ceeE
Confidence 77643 39999999999999999999999999999999999999999995 9999999999999998888 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhh
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 721 (727)
++|+.+++...+.+++++ +++++||+||+|..|+++++||+|+||||||++|++++++.+
T Consensus 443 a~v~~~~~~~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 502 (503)
T 4fuq_A 443 AVVVRDKGATIDEAQVLH----GLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDIY 502 (503)
T ss_dssp EEEEECTTCCCCHHHHHH----HHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTTT
T ss_pred EEEEeCCCCCCCHHHHHH----HHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHhh
Confidence 999998877777665554 578899999999999999999999999999999999987654
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-78 Score=681.25 Aligned_cols=483 Identities=20% Similarity=0.197 Sum_probs=414.7
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
|+++||++|+++.++ ++||+||+++++++|++|.+. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 11 a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 82 (511)
T 3e7w_A 11 AETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPV 82 (511)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEec
Confidence 478999999998776 999999999999999999885 7899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
+|.++.+++.+++++++++++|+++..... . . .......++.++......
T Consensus 83 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~--~----------~----------------~~~~~~~~~~~~~~~~~~-- 132 (511)
T 3e7w_A 83 DLSIPSERIAKIIESSGAELLIHAAGLSID--A----------V----------------GQQIQTVSAEELLENEGG-- 132 (511)
T ss_dssp ETTSCHHHHHHHHHHHTCCEEEESSSCCTT--C----------C----------------CCSSCEEEHHHHHTSCSC--
T ss_pred CCCChHHHHHHHHHhCCCCEEEecccccch--h----------c----------------ccccceecHhhhhccccC--
Confidence 999999999999999999999997642100 0 0 000112344454443222
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCc
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (727)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|..|+
T Consensus 133 --~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 210 (511)
T 3e7w_A 133 --SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGG 210 (511)
T ss_dssp --CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTC
T ss_pred --CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCC
Confidence 111223356789999999999999999999999999999998888899999999999999999999988999999999
Q ss_pred EEEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 424 TLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 424 ~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
++++.+.. .++..+++.|+++++|++.++|++++.++........+++++|.+++|||++++++.+++.+.+++++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~ 290 (511)
T 3e7w_A 211 TLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIF 290 (511)
T ss_dssp EEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEE
T ss_pred EEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEE
Confidence 99998643 4678899999999999999999999999988766667789999999999999999999999998889999
Q ss_pred ccccccccccccccCCCC----CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCcccccc
Q 004860 502 ESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNA 572 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~ 572 (727)
|.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+| +.||++ ++
T Consensus 291 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~ 362 (511)
T 3e7w_A 291 NTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRGYLG------EP 362 (511)
T ss_dssp ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCCBTT------CH
T ss_pred eCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChhhCC------Cc
Confidence 999999998765433221 12344679999999999999999999999996 99999 356665 44
Q ss_pred ccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCC
Q 004860 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (727)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~ 652 (727)
+.|++.|... +|.+||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+
T Consensus 363 ~~t~~~f~~~---~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~ 437 (511)
T 3e7w_A 363 ELTEKAFFSH---EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVR-QSQYVRSAVVIPYQPNGTV 437 (511)
T ss_dssp HHHHHHEEES---SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEECSSSSC
T ss_pred ccchhhhcCC---CCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEEcCCCCc
Confidence 4677777543 36678999999999 69999999999999999999999999999995 8999999999999988777
Q ss_pred ceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhc
Q 004860 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722 (727)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 722 (727)
+.++++|+++++...+..++.+.|+++++++||.||+|..|+++++||+|+||||||++|++++...-.
T Consensus 438 -~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 506 (511)
T 3e7w_A 438 -EYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSH 506 (511)
T ss_dssp -CEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHT
T ss_pred -eEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcc
Confidence 899999999887666666778889999999999999999999999999999999999999999876543
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-79 Score=688.47 Aligned_cols=490 Identities=19% Similarity=0.215 Sum_probs=402.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||++
T Consensus 35 a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 106 (539)
T 1mdb_A 35 AAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFAL 106 (539)
T ss_dssp HHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECC
T ss_pred HHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCC
Confidence 468999999998766 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC-cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
|.++.+++.+++++++++++|+++.... .........+....+. ..+++.... ..|.++......
T Consensus 107 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-- 172 (539)
T 1mdb_A 107 PSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHTE-- 172 (539)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCCC--
T ss_pred CCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhcccc--
Confidence 9999999999999999999999875321 0000112222222222 112221110 012222211111
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchH--HhHHhhhc
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLN 421 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l~~ 421 (727)
........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++. .++.+|+.
T Consensus 173 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 249 (539)
T 1mdb_A 173 ---PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYA 249 (539)
T ss_dssp ---CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred ---ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHh
Confidence 1112335679999999999999999999999999999988888888999999999999999999875 58999999
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+ +++++
T Consensus 250 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~ 327 (539)
T 1mdb_A 250 GGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQ 327 (539)
T ss_dssp TCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEE
T ss_pred CCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEE
Confidence 99999986 46789999999999999999999999999876544556789999999999999999988888776 68899
Q ss_pred ccccccccccccccCCCCCCccccccccCCCCc-eEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccc
Q 004860 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~ 575 (727)
|.||+||+++.++..........+++|+|+++. +++|+|++++++|.|+. |||+| +.||++ +++.|
T Consensus 328 ~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t 399 (539)
T 1mdb_A 328 QVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRGYYK------AEEHN 399 (539)
T ss_dssp EEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSSCTT------CHHHH
T ss_pred EEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchhhcC------Chhhh
Confidence 999999976543322211123456899999765 79999999999999996 99998 456665 34466
Q ss_pred cccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceE
Q 004860 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (727)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~ 655 (727)
++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.
T Consensus 400 ~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~ 471 (539)
T 1mdb_A 400 AASFTED------GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG-ER 471 (539)
T ss_dssp HHHBCTT------SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EE
T ss_pred hhhccCC------CCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeccccccC-ce
Confidence 7777543 39999999999999999999999999999999999999999995 9999999999999998777 89
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhh-cCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhcc
Q 004860 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~-L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
++|||++++ ...+.+++++ .++++ ||+||+|+.|+++++||+|+||||||++|++++.+++++
T Consensus 472 ~~a~vv~~~-~~~~~~~l~~----~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 535 (539)
T 1mdb_A 472 SCVFIIPRD-EAPKAAELKA----FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLA 535 (539)
T ss_dssp EEEEEEESS-SCCCHHHHHH----HHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHT
T ss_pred EEEEEEECC-CCCCHHHHHH----HHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhc
Confidence 999999874 3455555555 46676 999999999999999999999999999999999888765
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-79 Score=684.98 Aligned_cols=487 Identities=19% Similarity=0.217 Sum_probs=408.0
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.++ ++||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 11 a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~ 82 (512)
T 3fce_A 11 AAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVD 82 (512)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeC
Confidence 468999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|++....... .+.. ++. ...+.+.......
T Consensus 83 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~------------~~~~--~~~-------------~~~~~~~~~~~~~--- 132 (512)
T 3fce_A 83 LSIPADRVQRIAENSGAKLLLSATAVTVTD------------LPVR--IVS-------------EDNLKDIFFTHKG--- 132 (512)
T ss_dssp TTSCHHHHHHHHHHSCCCEEEESSCCCSSC------------CSSE--EEE-------------THHHHHHHHHTTT---
T ss_pred CCCcHHHHHHHHHhcCCCEEEecCcccccc------------cccc--eec-------------hhhhhhhcccccc---
Confidence 999999999999999999999975421100 0000 000 0112222211111
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcE
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (727)
....+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|+.+++.++.+++.|++
T Consensus 133 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 212 (512)
T 3fce_A 133 NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGT 212 (512)
T ss_dssp CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCE
T ss_pred cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCE
Confidence 11122334567999999999999999999999999999999888888999999999999999999999989999999999
Q ss_pred EEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccc
Q 004860 425 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (727)
Q Consensus 425 lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (727)
+++.+.. .++..+++.|+++++|++.++|+++..++........++++||.+++|||++++++.+++.+.+++++++|
T Consensus 213 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 292 (512)
T 3fce_A 213 LWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN 292 (512)
T ss_dssp EEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe
Confidence 9998743 47789999999999999999999999998877666778899999999999999999999999988899999
Q ss_pred cccccccccccccCCCCC----CccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccc
Q 004860 503 SCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (727)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (727)
.||+||+++.++...... .....++|+|+++++++|+|++|+++|.|+. |||+| +.||++ +++
T Consensus 293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~ 364 (512)
T 3fce_A 293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVGYLG------SPE 364 (512)
T ss_dssp EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSCBTT------CHH
T ss_pred CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChhhcC------Cch
Confidence 999999987654332211 1245689999999999999999999999996 99999 356665 444
Q ss_pred cccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCc
Q 004860 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (727)
Q Consensus 574 ~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~ 653 (727)
.|++.|.. .+|.+||+|||+|++ +||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.++...+
T Consensus 365 ~t~~~f~~---~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~- 438 (512)
T 3fce_A 365 LTEKAFTM---IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLR-ACSYVEGAVIVPIKKGEKY- 438 (512)
T ss_dssp HHHHHEEE---ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHH-HSTTEEEEEEEEEEETTEE-
T ss_pred hhhhcccc---CCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEecCCCc-
Confidence 66766643 236779999999999 89999999999999999999999999999995 9999999999999887777
Q ss_pred eEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhccc
Q 004860 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVR 724 (727)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 724 (727)
+.++|+|++.++...+...+.+.|+++++++||.|++|..|+++++||+|+||||||++|++.+.++-.+.
T Consensus 439 ~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~ 509 (512)
T 3fce_A 439 DYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHH 509 (512)
T ss_dssp EEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-----
T ss_pred eEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccccc
Confidence 89999999987665555677788999999999999999999999999999999999999999998765544
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-79 Score=686.30 Aligned_cols=483 Identities=22% Similarity=0.209 Sum_probs=399.8
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+++++||++|+++.+.. .++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||+
T Consensus 25 ~a~~~p~~~A~~~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 25 RATVSPRLQAYVEPSTD------VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp HHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCCeEEEeCCcC------ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 34789999999986431 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (727)
+|.++.+++.+++++++++++|++.... +....+...... ....+ ....++.+.......
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 160 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDW------------IGADSLAERLRSAAA 160 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEE------------EEHHHHHHHHHHCCC
T ss_pred CcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEc------------cCcccHHHHhhccCc
Confidence 9999999999999999999999987532 122222211111 00000 011224444433221
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhc
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (727)
..+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|+.+++.++.+++.
T Consensus 161 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~ 235 (517)
T 3r44_A 161 -----DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMR 235 (517)
T ss_dssp -----CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhc
Confidence 122334578999999999999999999999999999999888888999999999999999999999876666669
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++... +++++
T Consensus 236 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 236 GVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred CeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 99999986 4688999999999999999999999999987654445678899999999999999999888776 68999
Q ss_pred ccccccccccccccCCCC-CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccc
Q 004860 502 ESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~ 575 (727)
|.||+||+++..+..... .....+++|+|+++++++|+|++++++|.| . |||+| +.||++ +++.|
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~--GEl~v~g~~v~~GY~~------~p~~t 383 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-E--GEVVIKSDILLKEYWN------RPEAT 383 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-E--EEEEEEETTSCSEETT------CHHHH
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-C--eEEEEeCcchhhhhCC------Chhhh
Confidence 999999998755443332 234567899999999999999999999988 3 99999 456665 34467
Q ss_pred cccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceE
Q 004860 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (727)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~ 655 (727)
++.|. .+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.
T Consensus 384 ~~~f~-------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~ 454 (517)
T 3r44_A 384 RDAFD-------NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVII-GVPGVSEVAVIGLPDEKWG-EI 454 (517)
T ss_dssp HHTEE-------TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EE
T ss_pred Hhhhc-------CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHH-hCCCEeEEEEEeccccccC-ce
Confidence 76773 239999999999999999999999999999999999999999995 9999999999999998887 88
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhc
Q 004860 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722 (727)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 722 (727)
++++| ..++...+.+++++ +++++||+||+|..|+++++||+|+||||||++|++++.+.+.
T Consensus 455 ~~a~v-~~~~~~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 455 AAAIV-VADQNEVSEQQIVE----YCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp EEEEE-EECTTTCCHHHHHH----HHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred EEEEE-ECCCCCCCHHHHHH----HHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence 88888 55555666666555 5778899999999999999999999999999999999987654
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-77 Score=685.31 Aligned_cols=485 Identities=18% Similarity=0.212 Sum_probs=400.1
Q ss_pred CCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCC
Q 004860 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (727)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~ 268 (727)
||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|+++||++|.+|
T Consensus 39 pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~ 110 (617)
T 3rg2_A 39 SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110 (617)
T ss_dssp CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCcccc
Confidence 99999999877 999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC-cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCC
Q 004860 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (727)
Q Consensus 269 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (727)
.+++.++++++++++++++....... .......+....+. ....+.... ....+.+....... .
T Consensus 111 ~~~l~~~l~~~~~~~vl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-----~ 175 (617)
T 3rg2_A 111 RSELNAYASQIEPALLIADRQHALFS-GDDFLNTFVTEHSSIRVVQLLNDS---------GEHNLQDAINHPAE-----D 175 (617)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSGGGS-SSHHHHHHHHHSTTCCEEEEETCC---------STTBHHHHHHSCCS-----S
T ss_pred HHHHHHHHhhcCceEEEecccccccc-cHHHHHHHhhcCCccceeeecccc---------cccchhhhhccccc-----c
Confidence 99999999999999999987532100 00111222222222 222221111 11234444333221 1
Q ss_pred CCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch--HHhHHhhhcCcEE
Q 004860 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP--VILFSSFLNGATL 425 (727)
Q Consensus 348 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~~~~~l~~G~~l 425 (727)
.......++++|||+|||||||+||||+++|+++++.+.+....+++.++|++++.+|++|.++. +++|.+|+.|+++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~ 255 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEE
Confidence 22234567999999999999999999999999999999998888999999999999998877665 4689999999999
Q ss_pred EEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccc
Q 004860 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (727)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (727)
++.+ ..++..+++.|+++++|++.++|+++..|++... ....++++||.+++|||++++++.+++...+ +++++|.
T Consensus 256 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 256 VLAA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEeC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 9986 4677889999999999999999999999877532 2233689999999999999999998888776 6899999
Q ss_pred ccccccccccccCCCCCCccccccccCC-CCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccc
Q 004860 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (727)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~ 577 (727)
||+||+++.++...........++|+|+ ++.+++|+|++++++|.|+. |||+| +.||++ +++.|++
T Consensus 334 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~GY~~------~p~~t~~ 405 (617)
T 3rg2_A 334 FGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRGYYK------SPQHNAS 405 (617)
T ss_dssp EEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSCCTT------CHHHHHH
T ss_pred eccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccchhcC------Chhhhhh
Confidence 9999998765543333233346889997 78899999999999999996 99998 466666 4457888
Q ss_pred cccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
.|..++ ||||||+|++++||+|+|+||+|||||++|+||+|+|||++|. +||+|.+|+|++.+++..+ +.++
T Consensus 406 ~f~~~~------~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 477 (617)
T 3rg2_A 406 AFDANG------FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDELMG-EKSC 477 (617)
T ss_dssp HBCTTS------CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred ccCCCC------ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCcccC-eeEE
Confidence 886543 8999999999999999999999999999999999999999995 9999999999999988777 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHh-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhh
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 721 (727)
+|++..+ ..+.+++++ .+++ .||.||+|..|+++++||+|+||||||++|++++....
T Consensus 478 a~vv~~~--~~~~~~l~~----~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 478 AYLVVKE--PLRAVQVRR----FLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp EEEEESS--CCCHHHHHH----HHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred EEEEeCC--CCCHHHHHH----HHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 9999876 345555554 4666 69999999999999999999999999999999886553
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-76 Score=672.57 Aligned_cols=514 Identities=22% Similarity=0.288 Sum_probs=416.6
Q ss_pred CCCcCCCCcccHhhhhccCCC---CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh--cCCCCEEEE
Q 004860 164 GGTWLPGSVLNIAECCLLPSN---HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAI 238 (727)
Q Consensus 164 ~~~w~~~~~~~~~~~~l~~~~---~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~Vai 238 (727)
+..|+.+...|....++.+++ +|+++||++|+++.+.. +..+++||+||+++++++|++|++. +++||+|+|
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~---g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i 104 (570)
T 3c5e_A 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGK---GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAV 104 (570)
T ss_dssp CCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSS---SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEE
T ss_pred cccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCC---CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEE
Confidence 456766666666666665543 23449999999985421 1234899999999999999999986 999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcC
Q 004860 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPA 316 (727)
Q Consensus 239 ~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~ 316 (727)
+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++... +....+....+. .++++..
T Consensus 105 ~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEESS
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999987532 122222223332 2333321
Q ss_pred CCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHH--HHHhhchhcCC
Q 004860 317 IGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR--CTAEGWAHIDL 394 (727)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~--~~~~~~~~~~~ 394 (727)
.. ..+...+.+++..... ........+++++||+|||||||.||||+++|+ ++. ..... ..+++
T Consensus 179 ~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~ 244 (570)
T 3c5e_A 179 KS-------CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGL 244 (570)
T ss_dssp SC-------CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSC
T ss_pred cC-------ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCC
Confidence 11 1123356666544322 111233467999999999999999999999999 444 44444 67889
Q ss_pred CCCCEEEEecccccccchH-HhHHhhhcCcEEEEecC-CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccc
Q 004860 395 KVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (727)
Q Consensus 395 ~~~d~~l~~~~~~~~~~~~-~~~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~ 472 (727)
+++|++++.+|++|+.+++ .++.+|..|+++++.+. ..++..+++.|+++++|++.++|++++.|.+.. ....++++
T Consensus 245 ~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~ 323 (570)
T 3c5e_A 245 QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPH 323 (570)
T ss_dssp CTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTT
T ss_pred CCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-cccccccc
Confidence 9999999999999999986 68899999999999864 568899999999999999999999999998763 34456899
Q ss_pred eeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCe
Q 004860 473 IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (727)
Q Consensus 473 Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~g 552 (727)
||.+++|||+++++..+++.+.+ +++++|.||+||+++.++... ......+++|+|+++++++|+|++|+++|.|+.
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~- 400 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE- 400 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC-
T ss_pred ceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-ccccCCCcccccCCCceEEEECCCCCCCCCCCC-
Confidence 99999999999999998888766 688999999999986544332 223456789999999999999999999999996
Q ss_pred eeeEEEe----------cccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceee
Q 004860 553 VGEVGLF----------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 622 (727)
Q Consensus 553 iGel~v~----------~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri 622 (727)
|||+|. .||++ +++.|.+.|.+ +||+|||+|++++||+|+|+||+||+||++|+||
T Consensus 401 -GEl~v~~~~~~g~~v~~GY~~------~~~~t~~~f~~-------~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V 466 (570)
T 3c5e_A 401 -GDIGIRVKPIRPIGIFSGYVD------NPDKTAANIRG-------DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRI 466 (570)
T ss_dssp -EEEEEECSSBCCTTCCCEETT------CHHHHHHTEET-------TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEE
T ss_pred -CeeEEeccCCCCchhhccccC------ChhHhhhhhcC-------CccccceeEEEcCCceEEEEecCCCEEEECCEEE
Confidence 999985 24444 34466666641 3999999999999999999999999999999999
Q ss_pred chHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCC-CChHHHHHHHHHHHHhhcCCCcccceEEEcCCCC
Q 004860 623 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFP 701 (727)
Q Consensus 623 ~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~-~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP 701 (727)
+|.|||++|. +||+|.+|+|++.+++..+ +.++|||+++++.. .+.+.+.+.|+++++++||+||+|..|+++++||
T Consensus 467 ~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP 544 (570)
T 3c5e_A 467 GPSEVENALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLP 544 (570)
T ss_dssp CHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCC
T ss_pred CHHHHHHHHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCC
Confidence 9999999995 9999999999999988777 89999999876532 2335567788888999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHhhh
Q 004860 702 RTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 702 ~t~~GKvdR~~L~~~~~~~ 720 (727)
+|+||||+|++|++.+...
T Consensus 545 ~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 545 KTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp BCTTCCBCHHHHHHHHTC-
T ss_pred CCCCcCCcHHHHHHHHHhh
Confidence 9999999999999987654
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-77 Score=674.22 Aligned_cols=491 Identities=19% Similarity=0.169 Sum_probs=405.0
Q ss_pred CCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCC
Q 004860 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p 265 (727)
+++ |++|+++.+.+ +++||+||+++++++|+.|+++ +++||+|+|+++|++++++++|||+++|++++|++|
T Consensus 37 ~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~ 109 (548)
T 2d1s_A 37 AKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNE 109 (548)
T ss_dssp HHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECT
T ss_pred ccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCC
Confidence 567 99999974211 2899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC--CcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
.++.+++.+++++++++++|+++... +....+....+ ..++++.... ...+...|.++.......
T Consensus 110 ~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~- 176 (548)
T 2d1s_A 110 IYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILDSKV------DYRGYQCLDTFIKRNTPP- 176 (548)
T ss_dssp TSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETTCSS------CBTTBCBHHHHHHHTSCT-
T ss_pred CCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeCCcc------cccccccHHHHHhcCccc-
Confidence 99999999999999999999987532 12222222332 2222222110 001223466665543210
Q ss_pred CCCCCCCccC------CCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchh---cCCCCCCEEEEecccccccchHH
Q 004860 344 RPNYYSPVYN------PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVI 414 (727)
Q Consensus 344 ~~~~~~~~~~------~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~ 414 (727)
..+.... .+++++||+|||||||.||||+++|+++++.+.+.... ++++++|++++.+|++|+++++.
T Consensus 177 ---~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~ 253 (548)
T 2d1s_A 177 ---GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFT 253 (548)
T ss_dssp ---TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH
T ss_pred ---cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHH
Confidence 0011111 23899999999999999999999999999888777665 78899999999999999999866
Q ss_pred -hHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHh
Q 004860 415 -LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (727)
Q Consensus 415 -~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~ 493 (727)
++.++ .|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.+
T Consensus 254 ~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~ 331 (548)
T 2d1s_A 254 TLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVAR 331 (548)
T ss_dssp HHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHH
Confidence 56667 999999986 468899999999999999999999999999876555667899999999999999999999998
Q ss_pred hCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCc
Q 004860 494 KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASD 567 (727)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~ 567 (727)
.+++++++|.||+||+++.++... ......+++|+|+++++++|+| ++++++|.|+. |||+| +.||++
T Consensus 332 ~~~~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~--- 405 (548)
T 2d1s_A 332 RFNLPGVRQGYGLTETTSAIIITP-EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVN--- 405 (548)
T ss_dssp HTTCSCCEEEEECGGGSSEEEECC-TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT---
T ss_pred HcCCCceeeccccccccceeeecC-cccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHHhhhhcC---
Confidence 887889999999999987655432 2234567899999999999999 78999999996 99999 345655
Q ss_pred cccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeec
Q 004860 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647 (727)
Q Consensus 568 ~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~ 647 (727)
+++.|++.|.. .+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+
T Consensus 406 ---~~~~t~~~f~~------~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V~~~~ 475 (548)
T 2d1s_A 406 ---NPEATKELIDE------EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL-QHPSIFDAGVAGVP 475 (548)
T ss_dssp ---CHHHHHHHBCT------TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH-TSTTEEEEEEEEEE
T ss_pred ---ChHHhhhcccC------CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEE
Confidence 33456666642 239999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccc-eEEEcCCCCCCCCchhhHHHHHHHHhhhhcc
Q 004860 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS-LVKVVPEFPRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 648 ~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~-~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
++..| +.++|+|+++++...+.+++++ +++++|++|++|. .|+++++||+|+|||++|++|++++.+.+++
T Consensus 476 ~~~~g-~~~~a~vv~~~~~~~~~~~l~~----~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 547 (548)
T 2d1s_A 476 DPVAG-ELPGAVVVLESGKNMTEKEVMD----YVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVAK 547 (548)
T ss_dssp ETTTE-EEEEEEEEECTTCCCCHHHHHH----HHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC--
T ss_pred cCCCC-eeeEEEEEEcCCCCCCHHHHHH----HHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhhc
Confidence 98887 8999999998876666665555 5778999999999 9999999999999999999999999887653
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-78 Score=680.95 Aligned_cols=467 Identities=19% Similarity=0.183 Sum_probs=389.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 49 a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 120 (563)
T 1amu_A 49 VSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPID 120 (563)
T ss_dssp HHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeC
Confidence 478999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC--CcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
|.++.+++.+++++++++++|+++.... ...... ..+.++... . + .....
T Consensus 121 ~~~~~~~l~~il~~~~~~~li~~~~~~~----------~~~~~~~~~~~~~~~~~-----------~--~----~~~~~- 172 (563)
T 1amu_A 121 IEYPKERIQYILDDSQARMLLTQKHLVH----------LIHNIQFNGQVEIFEED-----------T--I----KIREG- 172 (563)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHH----------HHTTSCCCSEEEECCCS-----------T--T----TTSCC-
T ss_pred CCCcHHHHHHHHHhcCCCEEEEcCchhh----------hhhhccccCceeeecch-----------h--h----ccccC-
Confidence 9999999999999999999999875321 111111 111111100 0 0 00000
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcC
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (727)
........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|+.|
T Consensus 173 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 248 (563)
T 1amu_A 173 ----TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTG 248 (563)
T ss_dssp ----SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTT
T ss_pred ----ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCC
Confidence 0111234678999999999999999999999999999888887888999999999999999999999899999999
Q ss_pred cEEEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 423 ~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
+++++.+.. .++..+++.|+++++|++.++|+++..|... ++++||.+++||+++++++.+++.+. +++
T Consensus 249 ~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~ 319 (563)
T 1amu_A 249 ASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTY 319 (563)
T ss_dssp CEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEE
T ss_pred CEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeE
Confidence 999998642 4778899999999999999999998877432 46799999999999999998887653 689
Q ss_pred cccccccccccccccCCCC--CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccc
Q 004860 501 IESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (727)
+|.||+||++++++..... ......++|+|+++++++|+|++++++|.|+. |||+| +.||++ +++
T Consensus 320 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~pe 391 (563)
T 1amu_A 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLARGYWK------RPE 391 (563)
T ss_dssp EEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CHH
T ss_pred EEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCc--EEEEEechhhChhhCC------Cch
Confidence 9999999998755443221 22345689999999999999999999999995 99998 345655 445
Q ss_pred cccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCc
Q 004860 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (727)
Q Consensus 574 ~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~ 653 (727)
.|++.|..+|+.+|.+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+
T Consensus 392 ~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~- 469 (563)
T 1amu_A 392 LTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQEQ- 469 (563)
T ss_dssp HHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTSC-
T ss_pred hhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEeecCCCC-
Confidence 78888988888888899999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred eEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHH
Q 004860 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI 717 (727)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~ 717 (727)
+.++|||+... ..+.+++++ +++++||+||+|..|+++++||+|+||||||++|++..
T Consensus 470 ~~~~a~vv~~~--~~~~~~l~~----~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 470 PYLCAYFVSEK--HIPLEQLRQ----FSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp EEEEEEEEESS--CCCHHHHHH----HHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred eEEEEEEEeCC--CCCHHHHHH----HHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 89999999764 345455544 57788999999999999999999999999999998754
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-77 Score=666.31 Aligned_cols=474 Identities=20% Similarity=0.187 Sum_probs=388.8
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+.+ +++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 12 a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 85 (504)
T 1t5h_X 12 ATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLN 85 (504)
T ss_dssp HHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Confidence 4689999999986211 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEe--ecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFT--QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
|.++.+++.+++++++++++|+ ++... ..+....+... ++ .++++.......
T Consensus 86 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~-~~----------------~~~~~~~~~~~~ 139 (504)
T 1t5h_X 86 PRLKSAELAELIKRGEMTAAVIAVGRQVA---------DAIFQSGSGAR-II----------------FLGDLVRDGEPY 139 (504)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEECC--CHH---------HHHHHHCCCCE-EE----------------EGGGTEETTEEC
T ss_pred CccChHHHHHHHhhcCCcEEEEecchhhh---------hhhhhccccce-eE----------------EecchhhcCccc
Confidence 9999999999999999999999 55321 11111111111 11 122222211000
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCC--CCCCEEEEecccccccch-HHhHHhh
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL--KVGDVYCWPTNLGWVMGP-VILFSSF 419 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~-~~~~~~l 419 (727)
............+++++||+|||||||.||||+++|+++.+.+.+....+++ .++|++++.+|++|+.++ +.++.+|
T Consensus 140 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l 219 (504)
T 1t5h_X 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAAL 219 (504)
T ss_dssp CCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHH
T ss_pred ccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHH
Confidence 0000111133467999999999999999999999999999988887777888 889999999999999998 5688999
Q ss_pred hcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCCC
Q 004860 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (727)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~ 497 (727)
+.|+++++.+ ..++..+++.|+++++|++.++|++++.|.+... ....++++||.+++|||++++++.+++.+.+ +
T Consensus 220 ~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~ 297 (504)
T 1t5h_X 220 ALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-P 297 (504)
T ss_dssp HTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-C
T ss_pred HcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-C
Confidence 9999999987 4688899999999999999999999999987542 2445689999999999999999999998876 4
Q ss_pred CcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCC---CcCCCCCCeeeeEEEe------cccCCCCcc
Q 004860 498 NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECG---VPYPDDQPCVGEVGLF------PLYLGASDR 568 (727)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~---~~~p~G~~giGel~v~------~~y~~~~~~ 568 (727)
++++|.||+||+++.+... ....+++|+|.++++++|+|+++ +++|.|+. |||+|. .||++
T Consensus 298 ~~~~~~YG~TE~~~~~~~~----~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~GY~~---- 367 (504)
T 1t5h_X 298 GEKVNIYGTTEAMNSLYMR----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLN---- 367 (504)
T ss_dssp SEEEEEEEETTTEEEEEEE----SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTT----
T ss_pred cceeeeecccccccccccc----CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeeceecC----
Confidence 7899999999994332211 23457899999999999999888 99999996 999995 35554
Q ss_pred ccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecC
Q 004860 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (727)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~ 648 (727)
+++.|++.|. .| ||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.++
T Consensus 368 --~~~~t~~~f~-----~g--~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 437 (504)
T 1t5h_X 368 --QPQATAEKLQ-----DG--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLAD 437 (504)
T ss_dssp --CHHHHHHHEE-----TT--EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEC
T ss_pred --Cchhhhhhhc-----CC--ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEeec
Confidence 3446666773 13 9999999999999999999999999999999999999999995 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHh-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHh
Q 004860 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIK 718 (727)
Q Consensus 649 ~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 718 (727)
+..+ +.++|||+++++...+.+++++ ++++ +||+||+|+.|+++++||+|+||||||++|+++++
T Consensus 438 ~~~g-~~~~a~vv~~~~~~~~~~~l~~----~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 438 QRWG-QSVTACVVPRLGETLSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp SSSS-EEEEEEEEECTTCCCCHHHHHH----HHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred CCCC-cEEEEEEEecCCcCcCHHHHHH----HHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 8888 9999999998876666666655 4666 89999999999999999999999999999998874
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-77 Score=674.96 Aligned_cols=488 Identities=15% Similarity=0.141 Sum_probs=394.7
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+.+.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 14 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~ 85 (521)
T 3l8c_A 14 AQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVD 85 (521)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecC
Confidence 468999999999877 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|+++......... ....+.++...... .
T Consensus 86 ~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~--~ 133 (521)
T 3l8c_A 86 VHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI------------------------------SLVSLSEIESAKLA--E 133 (521)
T ss_dssp TTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS------------------------------EEEEHHHHHHHHHH--T
T ss_pred ccccHHHHHHHHHhCCCCEEEecCccccccccC------------------------------cccchhhhhhcccc--c
Confidence 999999999999999999999987542111100 01112221111000 0
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchh--cCCCCCCEEEEecccccccchHHhHHhhhcC
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G 422 (727)
..........+++++||+|||||||.||||+++|+++++.+.+.... +++.+++++++..|++|+.+.+.++.++..|
T Consensus 134 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G 213 (521)
T 3l8c_A 134 MPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALG 213 (521)
T ss_dssp CCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTT
T ss_pred CCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcC
Confidence 01112234567999999999999999999999999999887766554 7788999999999999999998899999999
Q ss_pred cEEEEecCC--CChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 423 ATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 423 ~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
+++++.+.. .++..+++.|.++++|++.++|+++..+.........++++||.+++||++++++..+++.+.++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i 293 (521)
T 3l8c_A 214 GTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKI 293 (521)
T ss_dssp CEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceE
Confidence 999998643 377889999999999999999999999988766666778999999999999999999999988888999
Q ss_pred cccccccccccccccCCCC----CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccc
Q 004860 501 IESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLN 571 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~ 571 (727)
+|.||+||+++.++..... .....+++|+|+++++++|+|++|+++|.|+. |||+| +.||++ +
T Consensus 294 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~ 365 (521)
T 3l8c_A 294 INAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKGYLN------N 365 (521)
T ss_dssp EEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSCBTT------C
T ss_pred EeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChhhcC------C
Confidence 9999999998765433221 11234679999999999999999999999996 99999 346665 4
Q ss_pred cccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCC
Q 004860 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (727)
Q Consensus 572 ~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~ 651 (727)
++.|++.|... ++.+||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.++...
T Consensus 366 ~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~ 441 (521)
T 3l8c_A 366 PEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLN-QSPMVASAVAVPRYNKEH 441 (521)
T ss_dssp HHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHH-TSTTEEEEEEECCCSSSC
T ss_pred chHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHH-cCCCcceEEEEEeecCCC
Confidence 44677777532 35679999999999999999999999999999999999999999995 999999999998876554
Q ss_pred CceEEEEEEEecCCCCC---ChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhcccC
Q 004860 652 GPEVLVIFVVLKKGFTS---QPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRS 725 (727)
Q Consensus 652 ~~~~l~a~vv~~~~~~~---~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~~ 725 (727)
+.+.++|+|+++++... ...++.+.|+++++++||+||+|..|+++++||+|+||||||++|++.+.++-.+..
T Consensus 442 ~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~ 518 (521)
T 3l8c_A 442 KVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGHHH 518 (521)
T ss_dssp C---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-------
T ss_pred CceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCcccc
Confidence 43889999999876432 223567788888999999999999999999999999999999999999877765543
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-78 Score=725.20 Aligned_cols=559 Identities=18% Similarity=0.207 Sum_probs=325.5
Q ss_pred cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCCCCCCCCcCCCCcccHhhhhccCCCCCCCCCCce
Q 004860 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTV 193 (727)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~ 193 (727)
|++ ++.++.||++|+.++..+++.+...+..+.....-... ..........+.. ..+.+ +++++||++
T Consensus 11 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~tl~-~~l~~--~a~~~pd~~ 78 (979)
T 3tsy_A 11 SSG-----LVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK----LPDIYIPNHLSLH-DYIFQ--NISEFATKP 78 (979)
T ss_dssp ---------------------------------------CCCBCCS----SCCCCCCTTSCHH-HHHTT--TGGGTTTSE
T ss_pred ccC-----cccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC----CCCCCCCCCCCHH-HHHHH--HHHhCCCCe
Confidence 666 99999999999999999998876544443332211110 0111111111222 22322 457899999
Q ss_pred EEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHH
Q 004860 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (727)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l 272 (727)
|+++...+ +++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|+++||++|.+|.+++
T Consensus 79 Al~~~~~~------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l 152 (979)
T 3tsy_A 79 CLINGPTG------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 152 (979)
T ss_dssp EEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHH
T ss_pred EEEECCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHH
Confidence 99986321 3899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCCCCcc
Q 004860 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (727)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (727)
.++++++++++||+++.... ....+.......++++... .....+.+...|.++...... .....+...
T Consensus 153 ~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 221 (979)
T 3tsy_A 153 AKQAKASNTKLIITEARYVD------KIKPLQNDDGVVIVCIDDN---ESVPIPEGCLRFTELTQSTTE--ASEVIDSVE 221 (979)
T ss_dssp HHHHHHHTEEEEEECSTTTT------TSHHHHHTSCCEEEECCCC---TTSCCCTTEEEGGGTSSCCSG--GGGGSCCSC
T ss_pred HHHHHHcCCeEEEEChHHHH------HHHHHhhcCCceEEEeCCc---ccccCCcccccHHHHhhcccc--ccccCCcCC
Confidence 99999999999999986432 2222322222333333211 111122333445554433221 001122334
Q ss_pred CCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch----hcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEEE
Q 004860 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLAL 427 (727)
Q Consensus 353 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv~ 427 (727)
..+++++||+|||||||+||||+++|+++++.+.+... .+++.++|++++.+|++|++++ ..++.+|..|+++++
T Consensus 222 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~ 301 (979)
T 3tsy_A 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILI 301 (979)
T ss_dssp CCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEE
T ss_pred CCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEE
Confidence 57899999999999999999999999999887765432 4678899999999999999998 457889999999999
Q ss_pred ecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccccccc
Q 004860 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (727)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (727)
.+ ..++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.+++++++|.||+|
T Consensus 302 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~T 380 (979)
T 3tsy_A 302 MP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMT 380 (979)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECG
T ss_pred eC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechh
Confidence 86 46788999999999999999999999999988766677899999999999999999999999988889999999999
Q ss_pred ccccccccCC----CCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccc
Q 004860 508 ELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (727)
Q Consensus 508 E~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~ 577 (727)
|++.+++... ...+...+++|+|++|++++|+| ++++++|.|+. |||+| +.||++ +++.|++
T Consensus 381 E~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~GY~~------~p~~t~~ 452 (979)
T 3tsy_A 381 EAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLN------NPAATAE 452 (979)
T ss_dssp GGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSEETT------CHHHHHH
T ss_pred hhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCccccccC------Chhhhhh
Confidence 9987544332 12234567899999999999999 56999999996 99999 456666 3446777
Q ss_pred cccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+++|++.+++..+ +.++
T Consensus 453 ~f~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~ 524 (979)
T 3tsy_A 453 TIDKD------GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPV 524 (979)
T ss_dssp HBCTT------SCEEEEEEEEECTTSCEEEEEESCC--------------------------------------------
T ss_pred hccCC------CcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEE
Confidence 77532 39999999999999999999999999999999999999999995 9999999999999988787 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhc
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 722 (727)
+||+.+++...+.++++ ++++++||.||+|..|+++++||+|+||||||++|++++.+.++
T Consensus 525 a~vv~~~~~~~~~~~l~----~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 585 (979)
T 3tsy_A 525 AFVVKSKDSELSEDDVK----QFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLG 585 (979)
T ss_dssp -----------------------------------------------------------------
T ss_pred EEEEECCCCCCCHHHHH----HHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcC
Confidence 99998776555545544 45778899999999999999999999999999999999876554
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-78 Score=688.82 Aligned_cols=471 Identities=20% Similarity=0.222 Sum_probs=309.0
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 85 a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~ 156 (570)
T 4gr5_A 85 AARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLD 156 (570)
T ss_dssp HHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcC
Confidence 478999999999776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|+++...... .....++.... .... .
T Consensus 157 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~----------------~~~~-----~ 202 (570)
T 4gr5_A 157 PQFPVERLALSLEDTGAPLLVTSRPLSGRL-------------TGTTTLYVEDE----------------AASD-----A 202 (570)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------------CSSEEEECCC---------------------------
T ss_pred CCChHHHHHHHHHhcCCCEEEecchhhhcc-------------cCCcceeeecc----------------cccc-----c
Confidence 999999999999999999999987543111 11111110000 0000 0
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcE
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (727)
..........+++++||+|||||||.||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+.+.++.+|+.|++
T Consensus 203 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 281 (570)
T 4gr5_A 203 PAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGAR 281 (570)
T ss_dssp -CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCE
T ss_pred cccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCE
Confidence 0111223456799999999999999999999999999877765 456789999999999999999888889999999999
Q ss_pred EEEecC-CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccccc
Q 004860 425 LALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (727)
Q Consensus 425 lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (727)
+++.+. ..++..+++.|+++++|++.++|+++..|.+... .++++||.+++|||+++++..+.+.+.+++++++|.
T Consensus 282 ~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~ 358 (570)
T 4gr5_A 282 CVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNG 358 (570)
T ss_dssp EEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred EEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEe
Confidence 999864 4578899999999999999999999999987642 357899999999999999998888888888999999
Q ss_pred ccccccccccccCCC---CCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccc
Q 004860 504 CGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (727)
Q Consensus 504 YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~ 575 (727)
||+||++++.+.... .......++|+|++|++++|+|++++++|.|+. |||+| +.||++ +++.|
T Consensus 359 YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~--GEl~v~g~~v~~GY~~------~~~~t 430 (570)
T 4gr5_A 359 YGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--GELYVAGAGLAHGYVS------RPALT 430 (570)
T ss_dssp ECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CHHHH
T ss_pred echhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCc--EEEEEeecccchhcCC------Cchhh
Confidence 999999875443322 122334579999999999999999999999995 99999 455665 44578
Q ss_pred ccccccccc--CCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCc
Q 004860 576 EVYFRGMPM--YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (727)
Q Consensus 576 ~~~f~~~p~--~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~ 653 (727)
++.|..+|+ .++.+||||||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++.++
T Consensus 431 ~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~- 508 (570)
T 4gr5_A 431 AERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV-GHPAVRQAAVLAQDSRLGD- 508 (570)
T ss_dssp HHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-------------------------------------------
T ss_pred hcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHh-cCCCcceEEEEEeeCCCCC-
Confidence 888887776 356789999999999999999999999999999999999999999995 9999999999999888777
Q ss_pred eEEEEEEEecCCC-CCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHH
Q 004860 654 EVLVIFVVLKKGF-TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 716 (727)
Q Consensus 654 ~~l~a~vv~~~~~-~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 716 (727)
+.++|||+.+++. ..+.++ |+++++++||.||+|..|+++++||+|+||||||++|++.
T Consensus 509 ~~~~a~vv~~~~~~~~~~~~----l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 509 KQLVAYVVAERADAPPDAAE----LRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ----------------------------------------------------------------
T ss_pred eEEEEEEEecCCCCCcCHHH----HHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 8999999986532 233344 4556778899999999999999999999999999999875
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-78 Score=681.02 Aligned_cols=491 Identities=19% Similarity=0.211 Sum_probs=314.3
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 39 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 39 GVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecC
Confidence 3478999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (727)
+|.++.+++.+++++++++++|+++..... ........+...... .+.++... .....+.++......
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 180 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ---------ATDFGLLDWIETPAE 180 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHTTCCCSEEEEETCC---------TTSEEHHHHHHSCCS
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEccccccc-cHHHHHHHHhhcccCcceEEEecCC---------ccccchhhhhhcccc
Confidence 999999999999999999999998753210 011112222222222 22222211 011234444333221
Q ss_pred CCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchH--HhHHhh
Q 004860 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSF 419 (727)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~l 419 (727)
.........+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.+++. .++.+|
T Consensus 181 ----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l 256 (544)
T 3o83_A 181 ----TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVL 256 (544)
T ss_dssp ----SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHH
T ss_pred ----cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHH
Confidence 11112345679999999999999999999999999999999888889999999999999999887764 588999
Q ss_pred hcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCc
Q 004860 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (727)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (727)
..|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+ +++
T Consensus 257 ~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~ 334 (544)
T 3o83_A 257 HAGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCK 334 (544)
T ss_dssp HTTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSE
T ss_pred HcCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCc
Confidence 9999999987 46788999999999999999999999999887655556788999999999999999988888776 689
Q ss_pred ccccccccccccccccCCCCCCccccccccCC-CCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccc
Q 004860 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (727)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~ 573 (727)
++|.||+||+++.++...........++|+|+ ++++++|+|++++++|.|+. |||+| +.||++ +++
T Consensus 335 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~ 406 (544)
T 3o83_A 335 LQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI--GMLATRGPYTFCGYYQ------SPE 406 (544)
T ss_dssp EEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSCCTT------CHH
T ss_pred EEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCe--eEEEEecCCcchhhcC------Chh
Confidence 99999999998655443333333457899996 89999999999999999996 99998 345665 444
Q ss_pred cccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCc
Q 004860 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (727)
Q Consensus 574 ~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~ 653 (727)
.|+..|..+ +||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..|
T Consensus 407 ~t~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g- 478 (544)
T 3o83_A 407 HNSQVFDED------NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL-LHPEVMHAALVAIVDEQFG- 478 (544)
T ss_dssp HHHHHBCTT------CCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------
T ss_pred hhhhhCCCC------CCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCCCCC-
Confidence 677777532 39999999999999999999999999999999999999999995 9999999999999998888
Q ss_pred eEEEEEEEecCCCCCChHHHHHHHHHHHHh-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
+.++|||+.++. ..+.++++ +++++ .||+||+|..|+++++||+|+||||||++|+++++..
T Consensus 479 ~~~~a~vv~~~~-~~~~~~l~----~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 479 EKSCAFIVSRNP-ELKAVVLR----RHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp --------------------------------------------------------------------
T ss_pred ceEEEEEEeCCC-CCCHHHHH----HHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 899999998752 23334444 45666 7999999999999999999999999999999988653
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-77 Score=677.34 Aligned_cols=491 Identities=22% Similarity=0.234 Sum_probs=366.3
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.+. +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 28 a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 28 AALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp HHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecC
Confidence 368999999996321 1224899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
|.++.+++.+++++++++++|+++... +....+....+. .++++.... +.....|.+++.....
T Consensus 104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~- 169 (541)
T 1v25_A 104 PRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-------PEGYLAYEEALGEEAD- 169 (541)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-------CTTCEEHHHHCCSCCC-
T ss_pred cccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-------CcccccHHHHhhccCC-
Confidence 999999999999999999999987532 222222222322 122222110 1123456665543221
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHh--hchhcCCCCCCEEEEecccccccchHHhHHhhh
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE--GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~ 420 (727)
.....+++++||+|||||||.||||+++|+++++.... ....++++++|++++.+|++|+.++..++.+++
T Consensus 170 -------~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~ 242 (541)
T 1v25_A 170 -------PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATL 242 (541)
T ss_dssp -------CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHH
T ss_pred -------cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHh
Confidence 12345789999999999999999999999999877665 334678899999999999999999877889999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcc
Q 004860 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (727)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l 500 (727)
.|+++++.+...++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++ +.+ ++++
T Consensus 243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~ 320 (541)
T 1v25_A 243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEV 320 (541)
T ss_dssp HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEE
T ss_pred cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCce
Confidence 99999998755688999999999999999999999999987543334568899999999999999998888 444 7899
Q ss_pred cccccccccccccccCCCCC----------CccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCC
Q 004860 501 IESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGA 565 (727)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~ 565 (727)
+|.||+||++.+++...... ....+++|+|+++++++|+|++|+++|.+...+|||+| +.||++
T Consensus 321 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~- 399 (541)
T 1v25_A 321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYG- 399 (541)
T ss_dssp EEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBT-
T ss_pred eecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccC-
Confidence 99999999987655443221 02346899999999999999999999853111499998 456665
Q ss_pred CccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEe
Q 004860 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS 645 (727)
Q Consensus 566 ~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~ 645 (727)
+++.|++.|..+ +||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++
T Consensus 400 -----~p~~t~~~f~~~------g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~ 467 (541)
T 1v25_A 400 -----NEEATRSALTPD------GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHPKVKEAAVVA 467 (541)
T ss_dssp -----CHHHHHTTBCTT------SCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------CEEE
T ss_pred -----ChhhhhhhccCC------CCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH-hCCCceEEEEEE
Confidence 344677777532 39999999999999999999999999999999999999999995 899999999999
Q ss_pred ecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHh-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhc
Q 004860 646 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELS 722 (727)
Q Consensus 646 ~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 722 (727)
.+++..+ +.++|||+++ +...+.+++++ ++++ +||+|++|..|+++++||+|+|||++|++|++++.+.++
T Consensus 468 ~~~~~~~-~~~~a~vv~~-~~~~~~~~l~~----~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 468 IPHPKWQ-ERPLAVVVPR-GEKPTPEELNE----HLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp EECSSSS-EEEEECC------------------------CCCTTTSCSBC--------------CCTTHHHHSTTSSC
T ss_pred ecCCCcC-ceEEEEEEEC-CCCCCHHHHHH----HHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhC
Confidence 9998888 8999999986 33344444444 4666 899999999999999999999999999999999876654
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-77 Score=678.07 Aligned_cols=497 Identities=17% Similarity=0.185 Sum_probs=306.6
Q ss_pred CCCCCceEEE---EecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEee
Q 004860 187 RKEDNTVAIV---WREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (727)
Q Consensus 187 ~~~pd~~Al~---~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vp 262 (727)
+++||++|++ +.+. .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|
T Consensus 31 ~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 104 (550)
T 3rix_A 31 KRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAP 104 (550)
T ss_dssp HHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEE
T ss_pred HhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEEee
Confidence 6788888875 3211 13899999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhcccC
Q 004860 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340 (727)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (727)
++|.++.+++.+++++++++++|+++... +.........+. .++++.... ...+..++.++.....
T Consensus 105 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 105 ANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKT------DYQGFQSMYTFVTSHL 172 (550)
T ss_dssp CCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSS------CBTTBCBHHHHHHHHC
T ss_pred cCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCc------cccCcccHHHHhhccc
Confidence 99999999999999999999999987532 222233333332 222222111 1123345666554432
Q ss_pred CCCC--CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchh---cCCCCCCEEEEecccccccchHHh
Q 004860 341 YHPR--PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVIL 415 (727)
Q Consensus 341 ~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~~ 415 (727)
.... ....+.....+++++||+|||||||.||||+++|+++++.+.+.... +++.++|++++.+|++|+++++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 252 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTT 252 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHH
Confidence 2100 01111122345889999999999999999999999998887766554 578899999999999999999889
Q ss_pred HHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhC
Q 004860 416 FSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (727)
Q Consensus 416 ~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~ 495 (727)
+.+++.|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++.+.+
T Consensus 253 ~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 253 LGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp HHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred HHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 99999999999986 46888999999999999999999999999988766677899999999999999999999998887
Q ss_pred CCCcccccccccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCccc
Q 004860 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRL 569 (727)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~ 569 (727)
+...++|.||+||+++.++.... .....+++|+|+++++++|+| ++++++|.|+. |||+| +.||+++
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~---- 404 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNN---- 404 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECCT-TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETTC----
T ss_pred CCCccccccCcCccccceecCCC-CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcchhhcCC----
Confidence 65569999999999976554433 334567899999999999999 57999999996 99999 3566653
Q ss_pred cccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCC
Q 004860 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649 (727)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~ 649 (727)
++.|+..|.. .+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++
T Consensus 405 --~~~t~~~~~~------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~ 475 (550)
T 3rix_A 405 --PEATNALIDK------DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPDD 475 (550)
T ss_dssp --HHHHHHHBCT------TSCEEEEEEEEECTTCCEEEC-----------------------------------------
T ss_pred --hhhhhhhcCC------CCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHH-hCCCcceEEEEEeecC
Confidence 4466666643 239999999999999999999999999999999999999999995 9999999999999998
Q ss_pred CCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCccc-ceEEEcCCCCCCCCchhhHHHHHHHHhhhhcc
Q 004860 650 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 650 ~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P-~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
..+ +.++++|+++++...+.++++++ ++++|++|+.| ..|+++++||+|+||||||++|++++.+..+.
T Consensus 476 ~~g-~~~~a~vv~~~~~~~~~~~l~~~----~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 476 DAG-ELPAAVVVLEHGKTMTEKEIVDY----VASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKG 545 (550)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCC-ceEEEEEEecCCCCCCHHHHHHH----HHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhccc
Confidence 888 89999999988766655555554 66778887655 57999999999999999999999999766543
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-75 Score=659.54 Aligned_cols=495 Identities=23% Similarity=0.264 Sum_probs=392.0
Q ss_pred ccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 004860 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (727)
Q Consensus 173 ~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~l 251 (727)
.|.....+.+++ + +||++|+++.+. ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|
T Consensus 23 ~~~~~~~l~~~~--~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 23 FNFAAYLFRLNE--T-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCHHHHHHHHTG--G-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred eeHHHHHHHhhh--c-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 344445555444 6 999999998765 999999999999999999999 9999999999999999999999
Q ss_pred HHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCC---CcEEEEcCCCCCCCCCCCcC
Q 004860 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDVGIPLREQ 328 (727)
Q Consensus 252 A~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~ 328 (727)
||+++|++++|++|.++.+++.+++++++++++|+++... +.........+ ..++++..... ....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 160 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRES-----EPRL 160 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------C
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEeccccc-----cccc
Confidence 9999999999999999999999999999999999987542 11222222111 22222221110 0001
Q ss_pred cccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHH-HHHHHhhchhcCCCCCCEEEEecccc
Q 004860 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLG 407 (727)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~~~~ 407 (727)
...|+++...... ........+++++||+|||||||.||||+++|+++ .+........+++.++|++++.+|++
T Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 161 APLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLF 235 (529)
T ss_dssp CCBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTT
T ss_pred ccchhhhhccCCC-----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHH
Confidence 2246666543221 11223456799999999999999999999999999 66666666678899999999999999
Q ss_pred cccchH-HhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChh
Q 004860 408 WVMGPV-ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (727)
Q Consensus 408 ~~~~~~-~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~ 486 (727)
|+++++ .++.+|..|+++++.+...++..+++.|+++++|++.++|+++..|+...........+||.+++|||+++++
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~ 315 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPRE 315 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHH
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHH
Confidence 999985 4678999999999886567889999999999999999999999999876543332124899999999999999
Q ss_pred hHHHHHhhCCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecc
Q 004860 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPL 561 (727)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~ 561 (727)
+.+++.+.+ +++++|.||+||++.+++..... ....+++|+|+++++++|+|++|+++|.|+. |||+| +.|
T Consensus 316 ~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~g 391 (529)
T 2v7b_A 316 IGERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-AVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVM 391 (529)
T ss_dssp HHHHHHHHH-SCCEEEEEECTTTSSEEEECCTT-CCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCC
T ss_pred HHHHHHHHh-CCceeeeEchhhcCceeeccccC-CCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCcccc
Confidence 999888776 68999999999997654443322 2456789999999999999999999999996 99999 345
Q ss_pred cCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceee
Q 004860 562 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILET 641 (727)
Q Consensus 562 y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a 641 (727)
|++ +++.+...|.+ +||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|
T Consensus 392 Y~~------~~~~t~~~f~~-------~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~ 457 (529)
T 2v7b_A 392 YWN------NREKSRATFLG-------EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLV-QHDAVLEA 457 (529)
T ss_dssp BTT------CHHHHHHHEET-------TEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHT-TSTTEEEE
T ss_pred cCC------ChHHHHHhhhc-------CCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHH-hCCCcceE
Confidence 555 34466666641 39999999999999999999999999999999999999999995 99999999
Q ss_pred EEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHH
Q 004860 642 AAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715 (727)
Q Consensus 642 ~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 715 (727)
+|++. ++..+ +.++++|++.++...+ +.+.+.|+++++++||+|++|..|+++++||+|+|||++|++|++
T Consensus 458 ~vv~~-~~~~~-~~~~a~vv~~~~~~~~-~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 458 AVVGV-DHGGL-VKTRAFVVLKREFAPS-EILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEE-EETTE-EEEEEEEEECTTCCCC-HHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred EEEEe-cCCCc-eEEEEEEEecCCCCcc-hhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 99998 55555 8899999988754322 335567888899999999999999999999999999999999985
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-77 Score=670.84 Aligned_cols=483 Identities=16% Similarity=0.137 Sum_probs=303.6
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 16 a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 87 (509)
T 3ivr_A 16 AALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVN 87 (509)
T ss_dssp HHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecC
Confidence 478999999999776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|++.... ..........+....++.... ....+.++......
T Consensus 88 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--- 149 (509)
T 3ivr_A 88 YRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLASD--- 149 (509)
T ss_dssp TTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCCC---
T ss_pred CCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccCC---
Confidence 999999999999999999999987542 111111222222211211111 11122222221111
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcE
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (727)
.........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..++.+++.|++
T Consensus 150 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~ 228 (509)
T 3ivr_A 150 -TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGA 228 (509)
T ss_dssp -SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred -CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCc
Confidence 1122334578999999999999999999999999999999988889999999999999999999999887777777777
Q ss_pred EEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
.++.. ..++..+++.|+++++|++.++|+++..|++.. ...++++||.++.+|++ +..+.+...+++++++|.|
T Consensus 229 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~Y 302 (509)
T 3ivr_A 229 SVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATF 302 (509)
T ss_dssp EEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEE
T ss_pred EEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEccc
Confidence 77766 678899999999999999999999999998875 44568899999999987 6677788888889999999
Q ss_pred cccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccc
Q 004860 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYF 579 (727)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f 579 (727)
|+||++++++..... ....++|+|++|++++|+|++++++|.|+. |||+| +.||++ +++.|+..|
T Consensus 303 G~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~gY~~------~~~~t~~~f 372 (509)
T 3ivr_A 303 GQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKGYWN------NAAATQHAF 372 (509)
T ss_dssp EEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCEETT------CHHHHHHHT
T ss_pred CccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCccccccC------CHHHhHHHh
Confidence 999998765543322 223459999999999999999999999996 99999 355655 344666677
Q ss_pred cccccCCCceeeeeCceEEEecCceEEEEeec--CCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA--DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 580 ~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~--dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
. .+||+|||+|++++||+++|+||+ ||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.++
T Consensus 373 ~-------~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 443 (509)
T 3ivr_A 373 R-------NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALK-QHPAIADAVVIGVPDPQWS-EAIK 443 (509)
T ss_dssp G-------GGSEEEEEEEEECTTSCEEEEEEC------------------------------------------------
T ss_pred h-------cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHH-hCCCceeEEEEeccccccC-cEEE
Confidence 4 239999999999999999999999 999999999999999999995 9999999999999998877 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhccc
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVR 724 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 724 (727)
++|+++++...+.++++ ++++++||+||+|..|+++++||+|+||||||++|++++.+.-.+.
T Consensus 444 a~v~~~~~~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~ 506 (509)
T 3ivr_A 444 AVCVCKPGESIAADALA----EFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHH 506 (509)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEEeCCCCCCCHHHHH----HHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccccc
Confidence 99998877655555554 4577889999999999999999999999999999999998765543
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-75 Score=653.04 Aligned_cols=459 Identities=20% Similarity=0.222 Sum_probs=362.2
Q ss_pred CCCCCCC-ceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+++++|+ ++|+++.++ ++||+||+++++++|++|. .|++|+|+++|++++++++|||+++|+++|||
T Consensus 31 ~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl 98 (505)
T 3nyq_A 31 APTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG----GAGRVAVWATPAMETGVAVVAALLAGVAAVPL 98 (505)
T ss_dssp CCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC-------CEEEECCSSHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEc
Confidence 3467776 999999877 9999999999999998775 48999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
||.+|.+++.+++++++++++|++.... .. ..... ...+.+...
T Consensus 99 ~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~---~~~~~--~~~~~~~~~-------------------------- 142 (505)
T 3nyq_A 99 NPKSGDKELAHILSDSAPSLVLAPPDAE-----LP---PALGA--LERVDVDVR-------------------------- 142 (505)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECTTCC-----CC---GGGTT--SEEEECCTT--------------------------
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCccc-----cc---hhhcc--ccccccccc--------------------------
Confidence 9999999999999999999999986421 00 00000 001111000
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcC
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G 422 (727)
.....+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|..++ +.++.+|..|
T Consensus 143 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G 222 (505)
T 3nyq_A 143 ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRG 222 (505)
T ss_dssp CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHT
T ss_pred cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcC
Confidence 000111233467899999999999999999999999999999988888999999999999999998887 5689999999
Q ss_pred cEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCC---CCCCccceeEEEeecCCCChhhHHHHHhhCCCCc
Q 004860 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL---EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (727)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~---~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (727)
+++++.+ ..++..+++.+ ++++|+++++|+++..|.+.... ...+++++|.+++|||+++++..+++...+ +++
T Consensus 223 ~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~ 299 (505)
T 3nyq_A 223 GSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRR 299 (505)
T ss_dssp CEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCC
T ss_pred CEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCe
Confidence 9999885 56778888888 88999999999999999874221 123467899999999999999988887765 689
Q ss_pred ccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCC---CCCeeeeEEE-----ecccCCCCccccc
Q 004860 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPD---DQPCVGEVGL-----FPLYLGASDRLLN 571 (727)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~---G~~giGel~v-----~~~y~~~~~~~~~ 571 (727)
++|.||+||+++.++.. .......+++|+|++|++++|+|++|++++. |+. |||+| +.||++ +
T Consensus 300 ~~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~ 370 (505)
T 3nyq_A 300 VIERYGMTETLMNTSVR-ADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESV--GEIQVRGPNLFTEYLN------R 370 (505)
T ss_dssp CEEEEEETTTEEEEECC-TTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCC--EEEEEESTTSCCEETT------C
T ss_pred eecccchhhcccccccC-CCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCce--EEEEEecCchhhhhCC------C
Confidence 99999999998755443 3334456789999999999999999999886 774 99998 456665 3
Q ss_pred cccccccccccccCCCceeeeeCceEEEecCceEEEEeec-CCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCC
Q 004860 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (727)
Q Consensus 572 ~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~-dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~ 650 (727)
++.|++.|..+ +||+|||+|++++||+|+|+||+ ||+||++|+||+|.|||++|. +||+|.+|+|++.+++.
T Consensus 371 ~~~t~~~f~~~------g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~-~~p~V~~a~Vv~~~~~~ 443 (505)
T 3nyq_A 371 PDATAAAFTED------GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL-EHPEVREAAVTGEPDPD 443 (505)
T ss_dssp HHHHHHTBCTT------SCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETT
T ss_pred hhHhhhhhcCC------CCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHH-HCcCccEEEEEeeECCC
Confidence 44677777643 39999999999999999999998 699999999999999999995 99999999999999988
Q ss_pred CCceEEEEEEEecCC-CCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHH
Q 004860 651 GGPEVLVIFVVLKKG-FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715 (727)
Q Consensus 651 ~~~~~l~a~vv~~~~-~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 715 (727)
.+ +.++|||++.++ ...+.++++ ++++++||+||+|+.|+++++||+|+||||||++|++
T Consensus 444 ~g-~~l~a~vv~~~~~~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 444 LG-ERIVAWIVPADPAAPPALGTLA----DHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp TE-EEEEEEEEESSTTSCCCHHHHH----HHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CC-cEEEEEEEECCCCCCCCHHHHH----HHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 88 999999999863 344545554 4577889999999999999999999999999999986
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-74 Score=641.58 Aligned_cols=483 Identities=17% Similarity=0.197 Sum_probs=364.2
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
+|+++||++|+++.++ ++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 79 (501)
T 3ipl_A 10 QAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMIN 79 (501)
T ss_dssp HHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecC
Confidence 3478999999998776 999999999999999999987 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.+++++++++++|++...............+ ............ . .......+............
T Consensus 80 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 151 (501)
T 3ipl_A 80 TRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDI----EFAGRDITTNGL-L---DNTMGIQYDTSNETVVPKES 151 (501)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC----------------------------------------CC
T ss_pred ccCCHHHHHHHHHhcCCCEEEEccccccccccccccccc----eeeeeecccccc-c---ccccccccccchhhccccCC
Confidence 999999999999999999999987644222111000000 000000000000 0 00000000000000000000
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcE
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~ 424 (727)
..........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++..++.+++.|++
T Consensus 152 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~ 231 (501)
T 3ipl_A 152 PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFT 231 (501)
T ss_dssp HHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred cccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCce
Confidence 00011223567999999999999999999999999999999888888999999999999999999999889999999999
Q ss_pred EEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
+++.+ ..++..+++.|+++++|++.++|++++.|.+...... .+||.+++|||++++++.+++.+. +++++|.|
T Consensus 232 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~Y 305 (501)
T 3ipl_A 232 VRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNSF 305 (501)
T ss_dssp EEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEE
T ss_pred EEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccc
Confidence 99987 4688999999999999999999999999988754332 289999999999999998888763 78999999
Q ss_pred cccccccccccCCCC-CCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCcccccccccccc
Q 004860 505 GGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (727)
Q Consensus 505 G~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~ 578 (727)
|+||+++.++..... .....+++|+|+++++++|+|++ .|+ +|||+| +.||++.+ +.+..
T Consensus 306 G~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~--~GEl~v~g~~~~~gY~~~~------~~t~~- 371 (501)
T 3ipl_A 306 GMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEG--HGELMIKGANVMNGYLYPT------DLTGT- 371 (501)
T ss_dssp EEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSC--CEEEEEESTTSCSCCSBST------TCCCS-
T ss_pred cccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCC--ccEEEEeccchhhhhCcCh------hhcch-
Confidence 999998654443321 12345789999999999999976 344 399998 45666533 34443
Q ss_pred ccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEE
Q 004860 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (727)
Q Consensus 579 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a 658 (727)
|. .+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.+++
T Consensus 372 ~~-------~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~g-~~~~a 442 (501)
T 3ipl_A 372 FE-------NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAK-QFPGISDAVCVGHPDDTWG-QVPKL 442 (501)
T ss_dssp EE-------TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hc-------CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEecccCC-ceEEE
Confidence 32 239999999999999999999999999999999999999999995 9999999999999998888 89999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 659 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 659 ~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
+++... ..+.+++++ +++++||+||+|..|+++++||+|+||||||++|++...+.
T Consensus 443 ~v~~~~--~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 443 YFVSES--DISKAQLIA----YLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEEESS--CCCHHHHHH----HHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EEEeCC--CCCHHHHHH----HHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 998753 345555555 57788999999999999999999999999999999877654
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-74 Score=650.45 Aligned_cols=487 Identities=18% Similarity=0.199 Sum_probs=296.0
Q ss_pred CCCCCCceEEEEecC--CCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEee
Q 004860 186 RRKEDNTVAIVWRED--RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (727)
Q Consensus 186 a~~~pd~~Al~~~~~--~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vp 262 (727)
|+++||++|+++.+. +......+++||+||+++++++|++|.+. + +||+|+|+++|++++++++|||+|+|+++||
T Consensus 30 a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vp 108 (562)
T 3ite_A 30 AKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVP 108 (562)
T ss_dssp HHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 478999999998652 01112335899999999999999999999 8 7999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCC
Q 004860 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (727)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (727)
++|.++.+++.+++++++++++|+++....... ......++.. ....+.+.......
T Consensus 109 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~~~~~~~~~- 165 (562)
T 3ite_A 109 IEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPETKVLDT-----------KNQSFIENLSTQDT- 165 (562)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTCEEEET-----------TCHHHHHHHHHSCC-
T ss_pred cCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccceeecc-----------cchhhhhhcccccc-
Confidence 999999999999999999999999875321110 0111111110 11123333222211
Q ss_pred CCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch--------hcCCCCCCEEEEecccccccchHH
Q 004860 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA--------HIDLKVGDVYCWPTNLGWVMGPVI 414 (727)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~~~~~~~~~~~~ 414 (727)
........+++++||+|||||||.||||+++|+++.+.+.+... .+.+...+++++.+++.|+.+++.
T Consensus 166 ----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (562)
T 3ite_A 166 ----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE 241 (562)
T ss_dssp ----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH
T ss_pred ----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH
Confidence 11122345788999999999999999999999999887665433 355788999999999999999999
Q ss_pred hHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhh
Q 004860 415 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (727)
Q Consensus 415 ~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~ 494 (727)
++.++..|+++++.+....+..+.+.|+++++|++.++|++++.+.. ...++++||.+++|||++++++.+++...
T Consensus 242 ~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~----~~~~~~~lr~~~~gG~~l~~~~~~~~~~~ 317 (562)
T 3ite_A 242 MFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDAPHLVYLGVGGEKMTPRTQQIWSSS 317 (562)
T ss_dssp HHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----CGGGSTTCCEEEEESSCCCHHHHHHHTTC
T ss_pred HHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----CccccCceEEEEEecCCCCHHHHHHHhhC
Confidence 99999999999987643345678899999999999999999988743 24467899999999999999998888764
Q ss_pred CCCCcccccccccccccccccCCCCCCccccccccCCCCceEEEECC-CCCcCCCCCCeeeeEEE-----ecccCCCCcc
Q 004860 495 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (727)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v-----~~~y~~~~~~ 568 (727)
++++++|.||+||+++.++..........+++|+|+++++++|+|+ .++++|.|+. |||+| +.||+++++
T Consensus 318 -~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~p~- 393 (562)
T 3ite_A 318 -DRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANGYLNRPD- 393 (562)
T ss_dssp -SSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCEESSCTT-
T ss_pred -CCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchhhCCCcc-
Confidence 4789999999999987655544444455678999999999999995 5888999996 99999 456666443
Q ss_pred ccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcC-CCceeeEEEeec
Q 004860 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-ESILETAAISVS 647 (727)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~-p~V~~a~vv~~~ 647 (727)
.++..+ .+|.+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +| |.|.+++|++.+
T Consensus 394 -----~t~~~~-----~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~-~~~~~~~~~~v~~~~ 462 (562)
T 3ite_A 394 -----AKGFCD-----INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR-SLSPTDIDVVTLLLN 462 (562)
T ss_dssp -----CCSEEE-----ETTEEEEEEEEEEEECTTSCEEEEEEC-------------------------------------
T ss_pred -----cccccc-----CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHH-hcCCCceeEEEEEec
Confidence 333222 246789999999999999999999999999999999999999999996 66 888899888888
Q ss_pred CCCCCceEEEEEEEecCCCCCC---------hHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCC-CCchhhHHHHHHHH
Q 004860 648 PAGGGPEVLVIFVVLKKGFTSQ---------PDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT-ASNKLLRRVLRDQI 717 (727)
Q Consensus 648 ~~~~~~~~l~a~vv~~~~~~~~---------~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t-~~GKvdR~~L~~~~ 717 (727)
++..+ +..+++++...+.... .+.+.+.|+++++++||+||+|+.|+++++||+| +|||+||++|++++
T Consensus 463 ~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~ 541 (562)
T 3ite_A 463 HPGTS-KQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMF 541 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCc-ceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHH
Confidence 88777 5555544444332211 1233456777888999999999999999999998 99999999999998
Q ss_pred hhh
Q 004860 718 KHE 720 (727)
Q Consensus 718 ~~~ 720 (727)
++.
T Consensus 542 ~~~ 544 (562)
T 3ite_A 542 HTL 544 (562)
T ss_dssp ---
T ss_pred hcc
Confidence 654
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-72 Score=643.79 Aligned_cols=492 Identities=15% Similarity=0.129 Sum_probs=386.4
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
|+++||++|+++.+. +..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 21 a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 96 (590)
T 3kxw_A 21 ALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIY 96 (590)
T ss_dssp HHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEec
Confidence 478999999998642 1234999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCC---CHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCC--cEEEEcCCCCCCCCCCCcCcccHHHHhccc
Q 004860 265 DSF---AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (727)
Q Consensus 265 p~~---~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (727)
|.+ +.+++.++++++++++++++.......... .....+. ...++. .+.+....
T Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~----------------~~~~~~~~ 155 (590)
T 3kxw_A 97 PPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTAD-----ELNTNPKFLKIPAIA----------------LESIELNR 155 (590)
T ss_dssp CCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC----------CCEETTEEEEE----------------GGGCCGGG
T ss_pred CCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHh-----hhhhcccccccceee----------------chhccccc
Confidence 988 457899999999999999987532110000 0000000 011110 11110000
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHH-hHHh
Q 004860 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSS 418 (727)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~ 418 (727)
. .........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|+++++. ++.+
T Consensus 156 ~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~ 230 (590)
T 3kxw_A 156 S-----SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTP 230 (590)
T ss_dssp G-----GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHH
T ss_pred c-----ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHH
Confidence 0 011223456799999999999999999999999999999999888999999999999999999999876 8899
Q ss_pred hhcCcEEEEecCCC---ChhhHHHHHHHhCCCEEEechHHHHHHHhc---CCCCCCCccceeEEEeecCCCChhhHHHHH
Q 004860 419 FLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKAWRNT---NCLEGLDWTKIRSFASTGETSNVDDDLWLS 492 (727)
Q Consensus 419 l~~G~~lv~~~~~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~---~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~ 492 (727)
++.|+++++.+... ++..+++.|+++++|++.++|+++..+.+. ......++++||.+++|||++++++.+++.
T Consensus 231 l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~ 310 (590)
T 3kxw_A 231 IYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFY 310 (590)
T ss_dssp HHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHH
Confidence 99999999986422 678899999999999999999999998775 223456789999999999999999998888
Q ss_pred hhCC-----CCcccccccccccccccccCCCC--------------------------CCccccccccCCCCceEEEECC
Q 004860 493 SKAW-----YNAIIESCGGTELSSAYIQGSLL--------------------------QPQAFGAFSTATMTAGLVILDE 541 (727)
Q Consensus 493 ~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~~~~~vld~ 541 (727)
+.++ +++++|.||+||++++++..... .....+++|+|+++ ++|+|+
T Consensus 311 ~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~ 388 (590)
T 3kxw_A 311 QAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDP 388 (590)
T ss_dssp HHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECT
T ss_pred HHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcC
Confidence 7753 45799999999999766543211 11234688999998 889997
Q ss_pred C-CCcCCCCCCeeeeEEE-----ecccCCCCccccccccccccccccccC--CCceeeeeCceEEEecCceEEEEeecCC
Q 004860 542 C-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRRHGDIIKRTVGGYIIVQGRADD 613 (727)
Q Consensus 542 ~-~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~--~g~~~yrTGDl~~~~~dG~l~~~GR~dd 613 (727)
+ ++++|.|+. |||+| +.||++ +++.|++.|..++.. .|.+||+|||+|+++ ||+|+|+||+||
T Consensus 389 ~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd 459 (590)
T 3kxw_A 389 DTLIPCDFDQV--GEIWVQSNSVAKGYWN------QPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKD 459 (590)
T ss_dssp TTCCBCCTTBC--EEEEEESTTSCCCBTT------CHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSC
T ss_pred CCCcCCCCCCE--EEEEEeCCcccccccC------ChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccc
Confidence 7 999999986 99999 456665 445778888765543 255699999999999 999999999999
Q ss_pred eeecCceeechHHHHHHHhhcCCCce--eeEEEeecCCCCCceEEEEEEEecCCC--CCChHHHHHHHHHHHHhhcCCCc
Q 004860 614 TMNLGGIKTSSVEIERVCDQADESIL--ETAAISVSPAGGGPEVLVIFVVLKKGF--TSQPDKLKMIFSKAIQSKLNPLF 689 (727)
Q Consensus 614 ~ik~~G~ri~~~eIE~~l~~~~p~V~--~a~vv~~~~~~~~~~~l~a~vv~~~~~--~~~~~~l~~~l~~~l~~~L~~~~ 689 (727)
+||++|+||+|.|||++|...||+|. +|+|++++++. + +.++++++++++. ..+.+++.++|+++|.+.+...+
T Consensus 460 ~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~ 537 (590)
T 3kxw_A 460 LIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-E-YKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEV 537 (590)
T ss_dssp HHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-E-EEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred eEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-C-ceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCce
Confidence 99999999999999999944899998 78999988765 4 7899999988753 23445666666666654332222
Q ss_pred ccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 690 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 690 ~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
.+..++.+++||+|+||||||++|++++.+.
T Consensus 538 ~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 538 HTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp CEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 2334555589999999999999999998654
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-57 Score=502.44 Aligned_cols=383 Identities=16% Similarity=0.143 Sum_probs=296.9
Q ss_pred CCCCCCceEEEEecCC-CCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 186 RRKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
++++||++|+++.+.. ...+..+++||+||+++++++|++|+++ + +||+|+|+++|++++++++|||+++|+++|||
T Consensus 34 a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 34 ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp HHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEee
Confidence 4789999999987621 1123346999999999999999999999 8 99999999999999999999999999999999
Q ss_pred CC---CCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCc-----EEEEcCCCCCCCCCCCcCcccHHHH
Q 004860 264 AD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-----AIVLPAIGNDVGIPLREQDLSWKDF 335 (727)
Q Consensus 264 ~p---~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~ 335 (727)
++ .++.+++.+++++++++++|+++... ..+.+..... ..++. ++..
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~----------------~~~~ 167 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRPGESPPSIIE----------------VDLL 167 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC------CCEEEE----------------GGGS
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccccccccceeE----------------eccc
Confidence 99 88899999999999999999987532 1221111100 01110 0000
Q ss_pred hcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCC------CCEEEEecccccc
Q 004860 336 LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV------GDVYCWPTNLGWV 409 (727)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~~~~~~ 409 (727)
... ...........+++++||+|||||||.||||+++|+++++.+.+....+++.+ +|++++.+|++|+
T Consensus 168 ~~~-----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 242 (480)
T 3t5a_A 168 DLD-----APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHD 242 (480)
T ss_dssp CTT-----CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTST
T ss_pred ccc-----cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCc
Confidence 000 01111223456789999999999999999999999999998888878888877 9999999999999
Q ss_pred cch-HHhHHhhhcCcEEEEecCC---CChhhHHHHHHHhCCCEEEechHHHHHHHhc----CCCCCCCccceeEEEeecC
Q 004860 410 MGP-VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNT----NCLEGLDWTKIRSFASTGE 481 (727)
Q Consensus 410 ~~~-~~~~~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~----~~~~~~~l~~Lr~i~~gGe 481 (727)
+++ +.++.+|+.|+++++.+.. .++..+++.|+++++| +.++|+++..++.. ......++++||.+++|||
T Consensus 243 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~ 321 (480)
T 3t5a_A 243 MGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSE 321 (480)
T ss_dssp THHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCT
T ss_pred cHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCC
Confidence 996 5689999999999998643 3778999999999999 78889988887753 2334567899999999999
Q ss_pred CCChhhHHHHHhhC-----CCCcccccccccccccccccCCCCC------------------------CccccccccCCC
Q 004860 482 TSNVDDDLWLSSKA-----WYNAIIESCGGTELSSAYIQGSLLQ------------------------PQAFGAFSTATM 532 (727)
Q Consensus 482 ~l~~~~~~~~~~~~-----~~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~~~iG~p~~ 532 (727)
++++++.+++.+.+ ++++++|.||+||+++.++...... ....+++|+|++
T Consensus 322 ~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~ 401 (480)
T 3t5a_A 322 RVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS 401 (480)
T ss_dssp TCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS
T ss_pred cCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC
Confidence 99999999988876 3467999999999998665544321 123468999999
Q ss_pred CceEEEECCC-CCcCCCCCCeeeeEEE-----ecccCCCCcccccccccccccccccc-----CCCceeeeeCceEEEec
Q 004860 533 TAGLVILDEC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM-----YKGMCLRRHGDIIKRTV 601 (727)
Q Consensus 533 ~~~~~vld~~-~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~-----~~g~~~yrTGDl~~~~~ 601 (727)
++++|+|++ |+++|.|+. |||+| +.||++ +++.|++.|..++. .++.+||||||+|+++
T Consensus 402 -~~~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d- 471 (480)
T 3t5a_A 402 -PIVRIVDSDTCIECPDGTV--GEIWVHGDNVANGYWQ------KPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT- 471 (480)
T ss_dssp -SEEEEEETTTTEECCTTBC--EEEEEESTTSCCCBTT------BHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-
T ss_pred -CEEEEEcCCCCcCCCCCCE--EEEEEeCCcccccccc------CcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-
Confidence 999999976 899999996 99999 456665 44577777864332 2356799999999997
Q ss_pred CceEEEEee
Q 004860 602 GGYIIVQGR 610 (727)
Q Consensus 602 dG~l~~~GR 610 (727)
||+|+|+||
T Consensus 472 dG~l~~~GR 480 (480)
T 3t5a_A 472 DGKMFIIGR 480 (480)
T ss_dssp TTEEEECC-
T ss_pred CCEEEEeCC
Confidence 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-56 Score=474.11 Aligned_cols=317 Identities=17% Similarity=0.132 Sum_probs=267.0
Q ss_pred CCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCCCCh
Q 004860 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE 434 (727)
Q Consensus 355 ~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~ 434 (727)
.|++|||+|||||||.||||++||+++++.+.+....++++++|++++.+|++|++++..++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 3789999999999999999999999999999998889999999999999999999999989999999999999875443
Q ss_pred hhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccccccccccccccc
Q 004860 435 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI 514 (727)
Q Consensus 435 ~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (727)
+++.|+++++|++.++|++++.|++... ...++++||.+++|||++++++.+++.+. +++++|.||+||++..++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 3567889999999999999999988754 34578999999999999999999888764 689999999999987554
Q ss_pred cCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccccCCCceeeeeC
Q 004860 515 QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG 594 (727)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTG 594 (727)
... ......+.+|.+.||+.+.+.+. ||+++...+. ..+||+||
T Consensus 190 ~~~-~~~~~~g~~~~~~pgv~~~~~~~------------Gel~~~g~~~-----------------------~~g~~~TG 233 (358)
T 4gs5_A 190 LKA-LNGPEASELYVFLPGIQYGVDER------------GCLHISGAVT-----------------------NGQTVQTN 233 (358)
T ss_dssp EEE-CSSTTCCSCEEECTTCEEEECTT------------SEEEEESGGG-----------------------TTCCEEEE
T ss_pred ccc-ccccccceeeccCCCeEEEecCc------------CceEEecccc-----------------------cCcceecC
Confidence 432 23344577889999988776432 8887743211 12399999
Q ss_pred ceEEEecCceEEEEeecCCeeecCceeechHHHHHHHh--hcCCCceeeEEE-eecCCCCCceEEEEEEEecCCCCCChH
Q 004860 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD--QADESILETAAI-SVSPAGGGPEVLVIFVVLKKGFTSQPD 671 (727)
Q Consensus 595 Dl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~--~~~p~V~~a~vv-~~~~~~~~~~~l~a~vv~~~~~~~~~~ 671 (727)
|+|++|+|| ++|+||+||+||++|+||+|.|||++|. ..||+|.+|+|+ +.+++..| +.++++|+...+ +
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~~-----~ 306 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAMP-----E 306 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCCC-----H
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCCC-----C
Confidence 999999998 6778999999999999999999998773 258999999886 56777777 899999886543 4
Q ss_pred HHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 672 KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 672 ~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
...+.|+++++++||+||+|+.|+++++||+|+||||||++|++++++.
T Consensus 307 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 307 ALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp HHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred cCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 4556677788899999999999999999999999999999999988664
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=436.97 Aligned_cols=325 Identities=19% Similarity=0.217 Sum_probs=257.2
Q ss_pred cCCC-CCeEEEEeCCCCCCCCCeEEecChHHHHHHHhh---chhcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEE
Q 004860 352 YNPV-DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLA 426 (727)
Q Consensus 352 ~~~~-~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv 426 (727)
..++ +++++|+|||||||.||||+++|+++.+...+. ...+++.++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 899999999999999999999999997766554 334689999999999998755554 56788999999998
Q ss_pred EecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCC--CccceeEEEeecCCCChhhHHHHHhhCCCCcccccc
Q 004860 427 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (727)
Q Consensus 427 ~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (727)
+.+ ..++..+++.|+++++|++.++|+++..|++....... ++++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 876 45788999999999999999999999999876332333 378999999999999999999988876 68999999
Q ss_pred cccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccc
Q 004860 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (727)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p 583 (727)
|+||+++.++..... .....|.|.+++.++|+| ++|+++|.|+. |||+|... ++..| |
T Consensus 239 G~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~~~-------------~~~~~---~ 297 (436)
T 3qov_A 239 GMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLTTL-------------DREMM---P 297 (436)
T ss_dssp EEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEEES-------------SCCSS---C
T ss_pred cchhhcCCeeEEecC---CCCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEecc-------------CcCCc---e
Confidence 999996432222111 112356788899999999 78999999996 99999541 11122 1
Q ss_pred cCCCceeeeeCceEEEecCc------e---EEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCce
Q 004860 584 MYKGMCLRRHGDIIKRTVGG------Y---IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (727)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~dG------~---l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~ 654 (727)
..||+|||+|++++|| + ++|+||+||+||++|+||+|.|||++|. +||+|.+++|++.+++..+ +
T Consensus 298 ----~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~-~ 371 (436)
T 3qov_A 298 ----LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ-D 371 (436)
T ss_dssp ----CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-E
T ss_pred ----EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-c
Confidence 1289999999999998 5 6999999999999999999999999995 9999999999999887766 8
Q ss_pred EEEEEEEecCCCCCC----hHHHHHHHHHHHHhhcCCC-cccceEEEcC--CCCCCCCchhhHH
Q 004860 655 VLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSKLNPL-FKVSLVKVVP--EFPRTASNKLLRR 711 (727)
Q Consensus 655 ~l~a~vv~~~~~~~~----~~~l~~~l~~~l~~~L~~~-~~P~~i~~v~--~lP~t~~GKvdR~ 711 (727)
.++++|+++ +...+ .++++++|+ +.|+.+ ++|..+++++ +||+|+ ||++|.
T Consensus 372 ~l~a~v~~~-~~~~~~~~~~~~l~~~l~----~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 372 EMIVEVELS-DLSTDNYIELEKIRRDII----RQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEEEC-TTCCCCHHHHHHHHHHHH----HHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred EEEEEEEEc-CccccchhhHHHHHHHHH----HHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 999999998 65544 345555554 445555 7888899998 999999 999985
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-49 Score=430.84 Aligned_cols=331 Identities=18% Similarity=0.172 Sum_probs=260.5
Q ss_pred cCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhc---hhcCCCCCCEEEEecccc-cccchHHhHHhhhcCcEEEE
Q 004860 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLAL 427 (727)
Q Consensus 352 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~-~~~~~~~~~~~l~~G~~lv~ 427 (727)
..+++++++|+|||||||.||||+++|+++.+...... ..++++++|++++..|++ |..++..++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999999999999877554332 367899999999999985 56666667899999999988
Q ss_pred ecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCC--ccceeEEEeecCCCChhhHHHHHhhCCCCccccccc
Q 004860 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (727)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (727)
.+. .++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 764 47889999999999999999999999998753222232 47999999999999999999888776 689999999
Q ss_pred ccccccc-cccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccc
Q 004860 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (727)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p 583 (727)
+||+++. +....... ....+.|.+++.++|+| ++|+++|.|+. |||+|... ++..| |
T Consensus 246 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~~~-------------t~~~~---p 304 (443)
T 2y4o_A 246 LSEVMGPGVACECVET---KDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFTSL-------------TKEAM---P 304 (443)
T ss_dssp ETTTTEEEEEEECTTT---CCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeEEeccCCC---CCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEeCC-------------CcccC---h
Confidence 9997432 22211111 11245577899999999 46999999996 99998631 11223 2
Q ss_pred cCCCceeeeeCceEEEecC-ceE-----EEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 584 MYKGMCLRRHGDIIKRTVG-GYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~d-G~l-----~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
..||+|||+|++++| |++ +|+||+||+||++|++|+|.|||++|. +||+|.+++|++++++..+ +.++
T Consensus 305 ----~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~ 378 (443)
T 2y4o_A 305 ----VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD 378 (443)
T ss_dssp ----CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence 128999999999999 987 899999999999999999999999995 9999999999988876666 8899
Q ss_pred EEEEecC--CCCCChHHHHHHHHHHHHhhcCCCc-ccceEEEc--CCCCCCCCchhhHHH
Q 004860 658 IFVVLKK--GFTSQPDKLKMIFSKAIQSKLNPLF-KVSLVKVV--PEFPRTASNKLLRRV 712 (727)
Q Consensus 658 a~vv~~~--~~~~~~~~l~~~l~~~l~~~L~~~~-~P~~i~~v--~~lP~t~~GKvdR~~ 712 (727)
++|++++ +...+ ..-.+.+++.|+++|+.|+ +|..+.++ ++||+|+|||++|+.
T Consensus 379 a~v~~~~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 379 LAVELRSEAAASVT-DGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp EEEEECHHHHTTCC-HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred EEEEECCcccccch-hhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence 9999875 32111 1112334445566666664 77777777 599999999999864
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-48 Score=425.67 Aligned_cols=330 Identities=18% Similarity=0.170 Sum_probs=261.4
Q ss_pred cCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhc---hhcCCCCCCEEEEeccc-ccccchHHhHHhhhcCcEEEE
Q 004860 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLAL 427 (727)
Q Consensus 352 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~l~~G~~lv~ 427 (727)
..+++++++|+|||||||.||||+++|+++.+...+.. ..++++++|++++..|+ .|..++..++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34668999999999999999999999999876654332 35789999999999998 466666668899999999987
Q ss_pred ecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCC--ccceeEEEeecCCCChhhHHHHHhhCCCCccccccc
Q 004860 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (727)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (727)
.+. .++..+++.|+++++|++.++|+++..|.+.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 653 47889999999999999999999999998753222222 47999999999999999999888776 689999999
Q ss_pred ccccccc-cccCCCCCCccccccccCCCCceEEEECC-CCCcCCCCCCeeeeEEEecccCCCCccccccccccccccccc
Q 004860 506 GTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (727)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p 583 (727)
+||+++. +....... ....+.|.+++.++|+|+ +|+++|.|+. |||+|... ++..| |
T Consensus 244 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~~~-------------t~~~~---~ 302 (437)
T 2y27_A 244 LSEVMGPGVASECVET---KDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFTSL-------------TKEAL---P 302 (437)
T ss_dssp ETTTTEEEEEECCTTT---CSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeeEEecCCC---CCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEecC-------------CcCCc---h
Confidence 9998432 22222211 112556778999999995 5999999996 99998531 12223 1
Q ss_pred cCCCceeeeeCceEEEec-CceE-----EEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEE
Q 004860 584 MYKGMCLRRHGDIIKRTV-GGYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (727)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~-dG~l-----~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~ 657 (727)
..||+|||+|++++ ||++ +|+||+||+||++|++|+|.|||++|. +||+|.+++|++++++..+ +.++
T Consensus 303 ----~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l~ 376 (437)
T 2y27_A 303 ----IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVLT 376 (437)
T ss_dssp ----CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceEE
Confidence 12899999999999 6986 899999999999999999999999995 9999999999998876666 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCc-ccceEEEc--CCCCCCCCchhhHHH
Q 004860 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF-KVSLVKVV--PEFPRTASNKLLRRV 712 (727)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~-~P~~i~~v--~~lP~t~~GKvdR~~ 712 (727)
++|+++++...+. .-.+.+++.+++.|+.|+ +|..+.++ ++||+|+ ||++|+.
T Consensus 377 a~v~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCPETAPDT-AAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCTTTTTCH-HHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECCCccchh-hhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9999887543211 112334445666667764 78888888 5999999 9999864
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-32 Score=290.18 Aligned_cols=237 Identities=14% Similarity=0.060 Sum_probs=179.4
Q ss_pred CCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhh---chhcCCCCCCEEEEeccc-ccccchHHhHHhhhcCcEEEEe
Q 004860 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLALY 428 (727)
Q Consensus 353 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~l~~G~~lv~~ 428 (727)
.+++++++|+|||||||+||||+++|+++.+...+. ...+++.++|++++..|+ .|+.++...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 467899999999999999999999999998887743 356788999999999999 88888887788899999 4444
Q ss_pred cCCCChh-----------------------hHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCCh
Q 004860 429 QGSPLER-----------------------SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNV 485 (727)
Q Consensus 429 ~~~~~~~-----------------------~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~ 485 (727)
. ..++. .++++|+++++|++.++|+++..|++.......++++||.+++|||++++
T Consensus 167 ~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 I-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp C-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred c-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 3 34555 77779999999999999999999987632223457899999999999999
Q ss_pred hhHHHHH-hhCCCCcccccccccccccccccCCCCCCccccccccC------CCCceEEEECC-CCCcCCCCCCeeeeEE
Q 004860 486 DDDLWLS-SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA------TMTAGLVILDE-CGVPYPDDQPCVGEVG 557 (727)
Q Consensus 486 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~vld~-~~~~~p~G~~giGel~ 557 (727)
+..+++. +.+++++++|.||+||+++++..+.. .++|+| +++++++|+|+ +|+++|.|+. |||+
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~--GEl~ 317 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLI------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GNVI 317 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE--EEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecccc------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc--eEEE
Confidence 9999999 88878999999999999865432211 158899 99999999997 8999999996 9999
Q ss_pred EecccCCCCccccccccccccccccccCCCceeeeeCceEEEecC---------ceEEEEeecCCeeecCce
Q 004860 558 LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG---------GYIIVQGRADDTMNLGGI 620 (727)
Q Consensus 558 v~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~d---------G~l~~~GR~dd~ik~~G~ 620 (727)
|.... +..|. + .|+|||++++.+. ..+..++|.|+++||.|.
T Consensus 318 vt~l~-------------~~~~l--~------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 318 VTHLS-------------PWAFY--P------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEE-------------TTEEE--E------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEcC-------------ccccc--c------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 85321 11221 1 4999999988643 246678899999999885
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.4e-16 Score=132.53 Aligned_cols=96 Identities=21% Similarity=0.306 Sum_probs=75.2
Q ss_pred eecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCCh---HHHHHHHHHHHHhhc
Q 004860 609 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKL 685 (727)
Q Consensus 609 GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~---~~l~~~l~~~l~~~L 685 (727)
.|.|||||++|+||+|.|||++|. +||+|.++++++.+++.++ +.++++|+..++...+. +++.+.|++++++.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh
Confidence 489999999999999999999996 9999999999999988887 89999999988765543 445666666676655
Q ss_pred CCCcccceEEEc--CCCCCCCCchhhH
Q 004860 686 NPLFKVSLVKVV--PEFPRTASNKLLR 710 (727)
Q Consensus 686 ~~~~~P~~i~~v--~~lP~t~~GKvdR 710 (727)
. +|..+.++ ++||+| +||++|
T Consensus 79 g---v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 79 L---VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp S---SCCEEEEECTTCSCCC----CCC
T ss_pred C---CccceEEEcCCeecCC-CCCcch
Confidence 3 34445555 589998 799977
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.5e-08 Score=109.53 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=39.3
Q ss_pred eeeCceEEEec----CceEEEEeecCCeeecCceeechHHHHHHHh
Q 004860 591 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (727)
Q Consensus 591 yrTGDl~~~~~----dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~ 632 (727)
||+||++++.. ..++.|+||.+++++++|.+|...+||++|.
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVD 457 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHH
Confidence 89999999974 5789999999999999999999999999986
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.5e-08 Score=107.46 Aligned_cols=134 Identities=15% Similarity=0.088 Sum_probs=80.7
Q ss_pred ccc---eeEEEeecCCCChhhHHHHHhhCCCCccc-ccccccccccccccCCCCCCccccccccCCCCc-eEEEECCC--
Q 004860 470 WTK---IRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVILDEC-- 542 (727)
Q Consensus 470 l~~---Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~vld~~-- 542 (727)
+++ +.+++.||- ..-...++...++.+++ ..|+.||+...+-......+...+ -..+++. -...++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~--~~L~~~~~ffEFip~~~~ 370 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVS--YTFMPNMSYFEFIPMDGG 370 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSCGGGCC--EEECTTSSEEEEEECSTT
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeeeccCCCCCcccCc--eeecCCcEEEEEEecccc
Confidence 456 666667772 22234455555667776 999999964322111111111111 0122332 23344321
Q ss_pred --CC-----cCCCCCCeeeeEEEecccCCCCccccccccccccccccccCCCceeeeeCceEEEec----CceEEEEeec
Q 004860 543 --GV-----PYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV----GGYIIVQGRA 611 (727)
Q Consensus 543 --~~-----~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~----dG~l~~~GR~ 611 (727)
.+ .|..|+. +|++|+..- |-.-||+||++++.. ..++.|+||.
T Consensus 371 ~~~~~v~l~eVe~G~~--YelViTt~~------------------------GL~RYr~GD~v~v~~f~~~~p~i~f~gR~ 424 (581)
T 4eql_A 371 DKNDVVDLEDVKLGCT--YEPVVTNFA------------------------GLYRMRVGDIVLVTGFYNNAPQFKFVRRE 424 (581)
T ss_dssp CCSSCEEGGGCCTTCE--EEEEEECSS------------------------SCCSEECCEEEEEEEEETTEEEEEEEEET
T ss_pred CCCcEeCHHHcCCCce--EEEEEeecc------------------------ceeeEEcCCEEEEcccCCCCcEEEEEEec
Confidence 11 2345664 788774220 111289999999976 4689999999
Q ss_pred CCeeecCceeechHHHHHHHhhc
Q 004860 612 DDTMNLGGIKTSSVEIERVCDQA 634 (727)
Q Consensus 612 dd~ik~~G~ri~~~eIE~~l~~~ 634 (727)
+++++++|+++...+||++|.+.
T Consensus 425 ~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 425 NVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp TEEECSSSCCEEHHHHHHHHHHC
T ss_pred CCEEEeeeeECCHHHHHHHHHHH
Confidence 99999999999999999999643
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-07 Score=102.73 Aligned_cols=162 Identities=15% Similarity=0.069 Sum_probs=90.0
Q ss_pred ccceeE--EEeecCCCChhhHHHHHhhCCCCccc-ccccccccccccccCCCCCCccccccccCCCCc-eEEEE--CCCC
Q 004860 470 WTKIRS--FASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVIL--DECG 543 (727)
Q Consensus 470 l~~Lr~--i~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~vl--d~~~ 543 (727)
+++|++ ++++|.. ..-...++...++.+++ ..|+.||+...+-......+... ....+|+. -...+ |+.+
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~--~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEA--TFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTC--CEEECTTSCEEEEEEC----
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeeeeecCCCCCcccc--ceeecCCcEEEEEEeccccc
Confidence 567752 3444422 22234454455567776 99999997543221111111110 01122332 12233 2221
Q ss_pred ---------CcCCCCCCeeeeEEEecccCCCCccccccccccccccccccCCCceeeeeCceEEEecC----ceEEEEee
Q 004860 544 ---------VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG----GYIIVQGR 610 (727)
Q Consensus 544 ---------~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~d----G~l~~~GR 610 (727)
..|..|+. +|++|+..- |-.-||+||++++..- ..+.|+||
T Consensus 377 ~~~~~~v~l~eve~G~~--YelviTt~~------------------------GL~RYr~GD~v~v~g~~~~~p~~~~~gR 430 (581)
T 4epl_A 377 EGEEKPVGLTQVKIGEE--YEVVITNYA------------------------GLYRYRLGDVVKVIGFYNNTPQLKFICR 430 (581)
T ss_dssp ---CCCEEGGGCCTTCE--EEEEEESTT------------------------SCSSEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCceeeHHHcCCCCe--EEEEEeecc------------------------ceeeEEcCCEEEEecccCCCcEEEEEee
Confidence 24566764 888874320 1112999999998742 67999999
Q ss_pred cCCeeecCceeechHHHHHHHhhc-----CC--CceeeEEEeecCCCCCceEEEEEEEec
Q 004860 611 ADDTMNLGGIKTSSVEIERVCDQA-----DE--SILETAAISVSPAGGGPEVLVIFVVLK 663 (727)
Q Consensus 611 ~dd~ik~~G~ri~~~eIE~~l~~~-----~p--~V~~a~vv~~~~~~~~~~~l~a~vv~~ 663 (727)
.|+++++.|.++...+||.+|.+. .. .|.+-.+..-.. ... ..-+.|+...
T Consensus 431 ~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~-~~p-~hyv~~wE~~ 488 (581)
T 4epl_A 431 RNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVS-TDP-GHYAIFWEIS 488 (581)
T ss_dssp TTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECS-SSS-CEEEEEEEES
T ss_pred cCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCC-CCC-CcEEEEEeec
Confidence 999999999999999999998632 22 356655544222 222 2444455664
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.8e-09 Score=118.92 Aligned_cols=132 Identities=12% Similarity=0.032 Sum_probs=102.1
Q ss_pred HHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCCC----Cccc-
Q 004860 13 LMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP----PLYW- 86 (727)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~----~~~~- 86 (727)
++-+++..++..+|.++++++.+. .++++||++||++ |++.+++.|..+..|+ |+++|++++..... ...+
T Consensus 374 ~lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~-i~~~l~~~r~~~~~~l--f~~~~~~~~~~~~~~~~~~~~~~ 450 (520)
T 2jgp_A 374 TLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEE-LVEKLAIARDLSRNPL--FDTVFTFQNSTEEVMTLPECTLA 450 (520)
T ss_dssp EEEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHH-HHHHTCCCCCTTSCSS--CSEEEEEECCCCSCCCCSSEEEE
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhcCCCCCCCCCc--EEEEEEEecCCCccccCCCceeE
Confidence 344566666777888888888877 8999999999999 9999998888777888 99999998754221 1111
Q ss_pred -cCChhh--hcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCe
Q 004860 87 -FPSLDQ--SKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPK 152 (727)
Q Consensus 87 -~~~~~~--~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~ 152 (727)
.+.... ..++||++.+...++++...+ |+. ++|++.+++++.++|.++|+++...|+.+..
T Consensus 451 ~~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l~ 515 (520)
T 2jgp_A 451 PFMTDETGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASIVQNPHIRLG 515 (520)
T ss_dssp ECSSCSSCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHHHHCTTCBGG
T ss_pred EeecCCCCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCccCchh
Confidence 111122 578888888777777888888 999 9999999999999999999998766655543
|
| >4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.6e-07 Score=102.08 Aligned_cols=130 Identities=6% Similarity=-0.101 Sum_probs=88.9
Q ss_pred HcCCCchh--hHHHHHHHHHHHHh-hcCCChhHHHHHHHHhh---hcCCCCCCCcchhhHHHhhhcccccCCCCC-----
Q 004860 15 KVGLKLEE--AEEFDKILKQVISC-SKGLDAREIWRELVARK---VLKPWHPHGLHQLVYYSVYNDWDASIKGPP----- 83 (727)
Q Consensus 15 ~~~~~~~~--~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~---~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~----- 83 (727)
-+++..++ ..+|.++++++.+. .++++| ++||+. |++ .|++.+..+..++ |+++|++++......
T Consensus 301 plr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~-i~~~~~~l~~~~~~~~~~l--f~~~~~~~~~~~~~~~~~~~ 376 (493)
T 4hvm_A 301 VFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHD-VVDLAVDLGVVTPPRVAAR--WDVAVHLCRNAPSSSLTRGE 376 (493)
T ss_dssp EEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHH-HHHHHHHTTSCBTTBTTGG--GCEEECC-------------
T ss_pred EEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHH-HHHHHhhhCcccCCCCCcc--eeEEEEEEecCCcccccccc
Confidence 34555556 67788888888877 999999 999999 999 9988888888888 999999986433221
Q ss_pred -------ccccCChh----------------hhcccc---hHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHH
Q 004860 84 -------LYWFPSLD----------------QSKLTN---LGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYW 136 (727)
Q Consensus 84 -------~~~~~~~~----------------~~~~~~---l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~ 136 (727)
....+... ..+++| +.+.+...++++...+ |+. ++| +.+++++.++|
T Consensus 377 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l~~~~ 450 (493)
T 4hvm_A 377 RTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSALLDGL 450 (493)
T ss_dssp -------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHHHHHH
T ss_pred ccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHHHHHH
Confidence 11111111 124577 7777777788888888 999 999 99999999999
Q ss_pred HHHHhhcceeEecCCeee
Q 004860 137 EIALKEISVVFREAPKCI 154 (727)
Q Consensus 137 ~~~l~~~~~~~~~~~~~~ 154 (727)
.++|+++...++.+...+
T Consensus 451 ~~~L~~~~~~p~~~l~~l 468 (493)
T 4hvm_A 451 DAAMAQAVADPSAPLPHS 468 (493)
T ss_dssp HHHHHHHHHCTTSBCCC-
T ss_pred HHHHHHHHhCCCCccccC
Confidence 999999988888777664
|
| >1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=97.70 E-value=2.9e-07 Score=99.94 Aligned_cols=134 Identities=6% Similarity=-0.147 Sum_probs=95.7
Q ss_pred HHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCC--CCcccc--
Q 004860 13 LMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKG--PPLYWF-- 87 (727)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~-- 87 (727)
++-+++..++..+|.++++++.+. .++++||++||+. +++.++..+ ...|+ |+++|++++.... ....+.
T Consensus 278 ~lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~l~~~~--~~~~l--f~~~~~~~~~~~~~~~~~~~~~~ 352 (436)
T 1l5a_A 278 SLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNA--EQSYF--MSPFINILPFESPHFADCQTELK 352 (436)
T ss_dssp EEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCT--TCCBC--CCSEEEEECCCCCCCTTCEEEEE
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHH-HHHHhcccc--cCCCc--cceEEEeeccCccccCCCeeEEE
Confidence 344566667777888888888887 8999999999999 999997654 23555 8888888754322 111110
Q ss_pred CChhhhcccchHHHHH-HhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhccee---EecCCeeeecC
Q 004860 88 PSLDQSKLTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVV---FREAPKCILDR 157 (727)
Q Consensus 88 ~~~~~~~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~---~~~~~~~~l~~ 157 (727)
........ |+.+.+. ..++++...+ |+. ++|++.+++++.++|.++|+++... ++.+...+|.+
T Consensus 353 ~~~~~~~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~lL~~ 421 (436)
T 1l5a_A 353 VLASGSAE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAE 421 (436)
T ss_dssp EEEECCCC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHS
T ss_pred ecCCCCcc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHhCC
Confidence 01112223 6666665 3456677777 988 9999999999999999999999877 77776666444
|
| >2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.00019 Score=78.28 Aligned_cols=123 Identities=13% Similarity=0.115 Sum_probs=78.1
Q ss_pred HHcCCCchhhHHHHHHHHHHHHhhcCCChhHHHHHHHHhhhcCCC-----CCCCcchhhHHHhhhcccccCCC----CCc
Q 004860 14 MKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPW-----HPHGLHQLVYYSVYNDWDASIKG----PPL 84 (727)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~~~~~~~a~~hq~~Pfe~~lv~~l~~~-----~~~~~~~~~~f~~~~~~~~~~~~----~~~ 84 (727)
.-+++..+...+|.++++++.+.+.+..||++||+. + +.|+.. +.....| +++|+++..... ...
T Consensus 310 lplr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~p----~~~f~~~~~~~~~~~~~~~ 383 (466)
T 2xhg_A 310 YPVLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYDI-L-KHVTLPENRGSLSFRVQP----EVTFNYLGQFDADMRTELF 383 (466)
T ss_dssp EEEEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHHH-H-HHTSCGGGSTTCCCCCCC----SEEEEEEEECCTTCSSSSC
T ss_pred ccEEEecCCCCCHHHHHHHHHHHHHhCccCCcccce-e-eecccccccccccccCCC----eEEEeecCcccccccCCce
Confidence 334555566678888888888774456999999996 4 556543 2223333 355666432111 111
Q ss_pred cccCCh---------------hhhcccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeE
Q 004860 85 YWFPSL---------------DQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVF 147 (727)
Q Consensus 85 ~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~ 147 (727)
...+.. .....++|++.+...++++...+ |+. ++|++.+|+++.++|.++|+++...+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l~~~~ 457 (466)
T 2xhg_A 384 TRSPYSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAIIAHC 457 (466)
T ss_dssp EECTTCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 111110 11126677766555667788888 999 99999999999999999999876443
|
| >1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=89.74 E-value=0.0059 Score=65.27 Aligned_cols=107 Identities=10% Similarity=-0.088 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHh-hcCCChhHHH-----HHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCC---CCccccCCh--hh
Q 004860 24 EEFDKILKQVISC-SKGLDAREIW-----RELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKG---PPLYWFPSL--DQ 92 (727)
Q Consensus 24 ~~~~~~l~~~~~~-~~a~~hq~~P-----fe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~---~~~~~~~~~--~~ 92 (727)
.+|.++++++.+. .++++||++| |++ +++.+++. .++ +++ |+ ++...... ......... ..
T Consensus 298 ~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~-i~~~~~~~--~pl-~~~-~~---n~~~~~~~~~~~~~~~~~~~~~~~ 369 (422)
T 1q9j_A 298 TDIVDLASDIVATLRADLANGVIQQSGLHFGT-AFEGTPPG--LPP-LVF-CT---DATSFPTMRTPPGLEIEDIKGQFY 369 (422)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGG-GGGCCCSS--SCC-CEE-EE---CCCCCCSCCCCTTCEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhcCeeeecccchHH-HhcccCCC--CCc-eEE-Ee---cCCcCCCCCCCCCceeEeeecccc
Confidence 3566666666666 8889999995 999 99988753 232 221 22 33221111 111111111 11
Q ss_pred -hcccchHHH-HHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeE
Q 004860 93 -SKLTNLGNA-LEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVF 147 (727)
Q Consensus 93 -~~~~~l~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~ 147 (727)
...+++.+. +...++++...+|+. + .+++++.++|.++|+++...+
T Consensus 370 ~~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l~~~~ 417 (422)
T 1q9j_A 370 CSISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTVPSEY 417 (422)
T ss_dssp CBSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHTTTSC
T ss_pred cCCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHhhcCc
Confidence 335566554 444555665555666 4 889999999999999986443
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=85.66 E-value=4.5 Score=42.81 Aligned_cols=100 Identities=11% Similarity=0.088 Sum_probs=75.6
Q ss_pred CCCCceEEEEecCCCCCCc--cceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCEEee
Q 004860 188 KEDNTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVS 262 (727)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~--s~~~vva~lA~~kaGa~~vp 262 (727)
..++.+|.+....+ .+|. ...+|.+.+...+..+++.+... ++++|++..+++- ....+..+++++..|+..++
T Consensus 87 ~~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSG-TTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCC-TTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34577776554432 2333 24689999988888888877778 9999999998885 34445567888999999988
Q ss_pred cCCCCCHHHHHHHHHhcCeEEEEeecc
Q 004860 263 IADSFAAREIATRLRVSKAKGIFTQDF 289 (727)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~ 289 (727)
+++ ...+++...+++.++.+++....
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHH
Confidence 765 47888999999999999987764
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=84.55 E-value=5.4 Score=42.24 Aligned_cols=100 Identities=14% Similarity=0.090 Sum_probs=75.2
Q ss_pred CCCCceEEEEecCCCCCCc--cceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC--HHHHHHHHHHHHhCCEEee
Q 004860 188 KEDNTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVS 262 (727)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s--~~~vva~lA~~kaGa~~vp 262 (727)
..++.+|.+....+ .+|. ...+|.+.+...+..+++.+... ++++|++..+++-+ ...+..+++++..|+..++
T Consensus 89 ~~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 89 VPREQVVRVHASSG-TTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SCGGGCCEEEEECC-SSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CChhheEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34567775544332 2333 24679999998888888877778 99999999988853 4445567888999999888
Q ss_pred cCCCCCHHHHHHHHHhcCeEEEEeecc
Q 004860 263 IADSFAAREIATRLRVSKAKGIFTQDF 289 (727)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~ 289 (727)
+++. ..+++...+++.++.++.....
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHH
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHH
Confidence 7654 7888899999999999987764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=83.79 E-value=5.8 Score=41.91 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=75.8
Q ss_pred CceEEEEecCCCCCCc--cceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCCEEeecCC
Q 004860 191 NTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIAD 265 (727)
Q Consensus 191 d~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~--s~~~vva~lA~~kaGa~~vpl~p 265 (727)
+.+|.+....+ .+|. ...+|.+.+...+..+++.+... +.++|++..+++- ....+..+++++..|+..++.++
T Consensus 86 ~~~a~i~~TSG-TTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSG-TTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSC-SSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCC-cCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 77887665432 2333 24689999999888888888888 9999999998874 44556677889999999888765
Q ss_pred CCCHHHHHHHHHhcCeEEEEeecc
Q 004860 266 SFAAREIATRLRVSKAKGIFTQDF 289 (727)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~ 289 (727)
. .++++...+++.++.+++....
T Consensus 165 ~-~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 165 G-NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp C-CHHHHHHHHHHHTCCEEECCHH
T ss_pred C-CHHHHHHHHHHHCCCEEEECHH
Confidence 4 6788899999999999987764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 727 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 3e-82 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 3e-72 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 8e-50 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 2e-47 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 5e-44 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 5e-40 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 3e-35 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 272 bits (696), Expect = 3e-82
Identities = 146/620 (23%), Positives = 249/620 (40%), Gaps = 47/620 (7%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRT-DKSKHGGTWLPGSVLNIAECCLLPSN 184
K ++ P+ +W K + + + + + + W LN+A CL
Sbjct: 25 KQSINDPDTFWGEQGKILD--WITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCL--DR 80
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
H ++ + AI+W D +S ++Y+EL V AN L + KGD +AI MPM
Sbjct: 81 HLQENGDRTAIIWEGDDTSQSKH--ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMV 138
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
A + LA G V I F+ +A + S ++ + T D +R GR PL V
Sbjct: 139 PEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNV 198
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSW---KDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
A LK + ++ + + + D+ W +D + P + +
Sbjct: 199 DDA--LKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLF 256
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPV-ILFSS 418
IL++SG+TG+PK + T + A + ++ D GD+Y ++GWV G +L+
Sbjct: 257 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 316
Query: 419 FLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKI 473
GAT +++G P + + V V +L T P+ ++A +EG D + +
Sbjct: 317 LACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL 376
Query: 474 RSFASTGETSNVDDDLWLSSK--AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT 531
R S GE N + W K ++++ TE + ++ L A S
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMITPLPGAIELKAGSATR 435
Query: 532 MTAG--LVILDECGVPYPDDQPCVGEV-------GLFPLYLGASDRLLNADHEEVYFRGM 582
G ++D G P G + G G +R E+ YF
Sbjct: 436 PFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERF-----EQTYFSTF 488
Query: 583 PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 642
GD +R GY + GR DD +N+ G + + EIE A I E A
Sbjct: 489 KNM-----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAA 542
Query: 643 AISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR 702
+ + A G + + +V L G P+ + ++ ++ PL ++ P+
Sbjct: 543 VVGIPHAIKG-QAIYAYVTLNHGEEPSPELYAEV-RNWVRKEIGPLATPDVLHWTDSLPK 600
Query: 703 TASNKLLRRVLRDQIKHELS 722
T S K++RR+LR + S
Sbjct: 601 TRSGKIMRRILRKIAAGDTS 620
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 245 bits (625), Expect = 3e-72
Identities = 130/618 (21%), Positives = 237/618 (38%), Gaps = 33/618 (5%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKH----GGTWLPGSVLNIAECCLL 181
K ++E P ++ + + + + + K+ W LN C+
Sbjct: 8 KESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCV- 65
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF--SKGDAIAID 239
H K N AI++ D + +TYKEL E+V VA L KGD +A+
Sbjct: 66 -DRHALKTPNKKAIIFEGDEPGQGYS--ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVY 122
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM A+I LAI G + + F++ + R+ +K + T D RGG+
Sbjct: 123 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIET 182
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
V A V + + +D + + YY + +
Sbjct: 183 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPL 242
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPV-ILFS 417
+L++SG+TG PK + + + + D DV+ ++GW+ G +++
Sbjct: 243 FLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYG 302
Query: 418 SFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTK 472
L G +++G+P ++ ++ + + VT P+ ++ + +E
Sbjct: 303 PLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKS 362
Query: 473 IRSFASTGETSNVDDDLWLSSK--AWYNAIIESCGGTELSSAYIQ--GSLLQPQAFGAFS 528
+R S GE + W S K I+++ TE S + + P G+ S
Sbjct: 363 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSAS 422
Query: 529 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 588
V+LD + G + + + + + +H+ + Y G
Sbjct: 423 FPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK-NHDRYLDTYLNPYPGY 481
Query: 589 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648
GD + GYI + GR DD +N+ G + S+ EIE D + E A + +
Sbjct: 482 Y--FTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAI-IEDPIVAECAVVGFND 538
Query: 649 AGGGPEVLVIFVVLKKGFTSQP------DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR 702
G + + FVVLK + +K ++ + P L+ +V + P+
Sbjct: 539 DLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPK 597
Query: 703 TASNKLLRRVLRDQIKHE 720
T S K++RR+LR + E
Sbjct: 598 TRSGKIMRRILRKILAGE 615
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 180 bits (458), Expect = 8e-50
Identities = 104/555 (18%), Positives = 177/555 (31%), Gaps = 61/555 (10%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
+ TY E+ ++ + L + GD +A
Sbjct: 20 AAALFGRKEVVSRLHTGEVHR----TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 75
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
R + Y A+ G V+ + + +EIA L ++ K + +L
Sbjct: 76 FRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------------ 123
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
++AI + + E+ PV P A + +
Sbjct: 124 ---PLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEAD----PVRVPERAACGMAY 176
Query: 364 SSGTTGEPKA--IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
++GTTG PK L A L DV + V + +++ L
Sbjct: 177 TTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLV 236
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GA L S + GVT VP++ A + G +R G
Sbjct: 237 GAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGS 296
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ---GSLLQPQAFGAFSTATMTAG--- 535
+ + + + G TE S +Q S L+ + T G
Sbjct: 297 AAPRSLIARF--ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI 354
Query: 536 ----LVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGMPMYK 586
L + DE G P P D +GEV + Y G + +A + +F
Sbjct: 355 PLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFF------- 407
Query: 587 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646
R GDI GY+ ++ R D + GG SSV++E + E A +++
Sbjct: 408 -----RTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENAL-MGHPKVKEAAVVAI 461
Query: 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASN 706
E + VV + + + + +++ E PRT++
Sbjct: 462 PHPKWQ-ERPLAVVVPRGEKPTPEE----LNEHLLKAGFAKWQLPDAYVFAEEIPRTSAG 516
Query: 707 KLLRRVLRDQIKHEL 721
K L+R LR+Q K+
Sbjct: 517 KFLKRALREQYKNYY 531
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 174 bits (441), Expect = 2e-47
Identities = 89/559 (15%), Positives = 179/559 (32%), Gaps = 43/559 (7%)
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD 227
P E L +R I + + + + +TY E E + +A A+
Sbjct: 12 YPLEDGTAGE--QLHKAMKRYALVPGTIAFTDAHIEVN----ITYAEYFEMSVRLAEAMK 65
Query: 228 TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286
+ I + +++ + L + G V D + RE+ + +S+ +F
Sbjct: 66 RYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 125
Query: 287 QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346
L+ ++ K I++ + + G ++ +Y P
Sbjct: 126 SKKGLQKILNVQKKLPIIQ----KIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVP- 180
Query: 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWP 403
++ + I+ SSG+TG PK + + +
Sbjct: 181 ---ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSV 237
Query: 404 TNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN 463
G + G + L E F + +QD + VP+L + +
Sbjct: 238 VPFHHGFGMFTTLGYLICGFRVVLMYRFEEEL-FLRSLQDYKIQSALLVPTLFSFFAKST 296
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523
++ D + + AS G + + ++ + I + G TE +SA + +
Sbjct: 297 LIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-ITPEGDDK 355
Query: 524 FGAFSTATMTAGLVILD-ECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHEEVYF 579
GA ++D + G +Q CV + Y+ N +
Sbjct: 356 PGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVN------NPEATNALI 409
Query: 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 639
GDI + + R + G + + E+E + Q I
Sbjct: 410 DKDGWL------HSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPN-IF 462
Query: 640 ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVP 698
+ + G E+ VVL+ G T ++ + S++ K+ V V
Sbjct: 463 DAGVAGLPDDDAG-ELPAAVVVLEHGKTMTEKEIV----DYVASQVTTAKKLRGGVVFVD 517
Query: 699 EFPRTASNKLLRRVLRDQI 717
E P+ + KL R +R+ +
Sbjct: 518 EVPKGLTGKLDARKIREIL 536
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 163 bits (414), Expect = 5e-44
Identities = 91/532 (17%), Positives = 174/532 (32%), Gaps = 67/532 (12%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
N VAIV ++ +TY EL + +A K + I M ++ I
Sbjct: 38 NNVAIVCENEQ--------LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG 89
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
LA++ AG V I + I L S+A+ + TQ ++
Sbjct: 90 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH----------------- 132
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
++ I + + + E+D R V + + ++++SGTTG
Sbjct: 133 ---LIHNIQFNGQVEIFEED----------TIKIREGTNLHVPSKSTDLAYVIYTSGTTG 179
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
PK +++ D ++ + +F + L GA+L +
Sbjct: 180 NPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIIL 239
Query: 430 GSPLE--RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
+ F +++ +TV+ L+ I++ + G ++
Sbjct: 240 KDTINDFVKFEQYINQKEITVITLP------PTYVVHLDPERILSIQTLITAGSATSPSL 293
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP 547
K Y T ++ ++ + I+DE
Sbjct: 294 VNKWKEKVTYINAYGPTETTICATTWVATK-ETIGHSVPIGAPIQNTQIYIVDENLQLKS 352
Query: 548 DDQP---CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604
+ C+G GL Y + F P G L + GD + G
Sbjct: 353 VGEAGELCIGGEGLARGYWK------RPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGN 406
Query: 605 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664
I GR D+ + + G + E+E + I ETA L + V +K
Sbjct: 407 IEYLGRIDNQVKIRGHRVELEEVESIL-LKHMYISETAVSVHKDHQEQ-PYLCAYFVSEK 464
Query: 665 GFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRD 715
++L+ + +L P + + S + + P T++ K+ R+ L +
Sbjct: 465 HIP--LEQLR----QFSSEEL-PTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 152 bits (385), Expect = 5e-40
Identities = 93/535 (17%), Positives = 171/535 (31%), Gaps = 45/535 (8%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
+ +AI +Y+EL + +A + + D + + +P +
Sbjct: 40 DRIAITCGNTH--------WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEV 91
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
A+ G + V S + EI ++A D A
Sbjct: 92 IFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG--------FDYRSLARQ 143
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
LP + N + E+ L +D + P + + S G+TG
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAF--------LQLSGGSTG 195
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALY 428
K IP T I L VY + L +
Sbjct: 196 LSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255
Query: 429 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDD 488
SP ++ VT+ VP L W + D + ++ G + +
Sbjct: 256 SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315
Query: 489 LWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA-TMTAGLVILDECGVPYP 547
+ + + + + G E Y + + + + D+
Sbjct: 316 RRVKAV-FGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVK 374
Query: 548 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 607
GE G L + E + G R GDI++ T GYI+V
Sbjct: 375 P-----GETGH--LLTRGPYTIRGYYKAEEHNAASFTEDGFY--RTGDIVRLTRDGYIVV 425
Query: 608 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 667
+GRA D +N GG K ++ E+E A ++ + A +S+ G E +F++ +
Sbjct: 426 EGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAMVSMPDQFLG-ERSCVFIIPRDEAP 483
Query: 668 SQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721
+ ++ + +K+ V+ V FP+T K+ ++ LR+ I +L
Sbjct: 484 KAAE-----LKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 138 bits (347), Expect = 3e-35
Identities = 93/514 (18%), Positives = 151/514 (29%), Gaps = 47/514 (9%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ELR +V VA L +A+ P + VI LA+ G V +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ E+A ++ + A + G+ I
Sbjct: 90 SAELAELIKRGEMTAAVIAV------------------GRQVADAIFQSGSGARIIFLGD 131
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI--PWTQLSSIRCTA 386
+ + S P I ++SGTTG PKA P S
Sbjct: 132 LVRDGEPYSYGPPIEDPQR------EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV 446
+ +V L V+G + + L + + VQ V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQV 245
Query: 447 TVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504
T L P+ + A G L +R G T + D + + +
Sbjct: 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGAT--MPDAVLETVHQHLPGEKVNI 303
Query: 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLG 564
GT + + + A + + I + + V
Sbjct: 304 YGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFV 363
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
A E + + G + + GR DD + GG
Sbjct: 364 GYLNQPQATAE--KLQDGWYRTSDVAVWTPE-------GTVRILGRVDDMIISGGENIHP 414
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
EIERV A + E I ++ G + + VV + G T D L +S
Sbjct: 415 SEIERVLGTAPG-VTEVVVIGLADQRWG-QSVTACVVPRLGETLSADALD----TFCRSS 468
Query: 685 LNPLFKV-SLVKVVPEFPRTASNKLLRRVLRDQI 717
FK ++ + P+ A NK+LRR L Q+
Sbjct: 469 ELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 727 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1l5aa2 | 250 | VibH {Vibrio cholerae [TaxId: 666]} | 97.66 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 90.57 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 87.12 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 82.8 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 82.04 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 81.19 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.1e-88 Score=778.28 Aligned_cols=582 Identities=25% Similarity=0.382 Sum_probs=480.5
Q ss_pred CCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCC-CCCCCCCcCCCCcccHhhhhccCCCCCCCCCCceEE
Q 004860 117 PITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTD-KSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAI 195 (727)
Q Consensus 117 ~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al 195 (727)
.+.+|+.+++++++++..||..+++. ..|.+++.++++... ......+||.++..|++++++++|. +.+||++|+
T Consensus 16 ~~~~y~~l~~~s~~~~~~fW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~N~~~n~ldrh~--~~~~d~~Al 91 (643)
T d1pg4a_ 16 NPEQYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAI 91 (643)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEE
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHhh--eeEECCCcccccCccCCCCCCCeeCCCChhhHHHHHHHHHH--HhCCCCEEE
Confidence 34678999999999999999999987 568899988876532 2234568999999999999999886 678999999
Q ss_pred EEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHHH
Q 004860 196 VWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIAT 274 (727)
Q Consensus 196 ~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~~ 274 (727)
++.+. +.+..+++||+||+++++++|++|+++ |++||+|+|+++|++++++++|||+++|++++|++|.++++++.+
T Consensus 92 i~~~~--~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~ 169 (643)
T d1pg4a_ 92 IWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAG 169 (643)
T ss_dssp EEECS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHH
T ss_pred EEEec--CCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHH
Confidence 98754 345667899999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEEeecccccCCccccchHHHhhhCC-------CcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCC
Q 004860 275 RLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-------LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (727)
Q Consensus 275 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (727)
++++++++++|+++...+..+..+....+...+. .+++++.......... ......+.+....... .
T Consensus 170 ~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~ 243 (643)
T d1pg4a_ 170 CIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLIEKASP-----E 243 (643)
T ss_dssp HHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCC-BTTEEEHHHHHTTSCS-----C
T ss_pred HHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccc-cccchhhhhhhcccCc-----c
Confidence 9999999999999988777777666555543321 2344444333222111 1223334444433222 2
Q ss_pred CCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHH-HHhhchhcCCCCCCEEEEecccccccch-HHhHHhhhcCcEE
Q 004860 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC-TAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATL 425 (727)
Q Consensus 348 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~l 425 (727)
..+...+++|++||+|||||||+||||+++|++++.. .......++++++|++++.+|++|++++ +.++++|++|+++
T Consensus 244 ~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~ 323 (643)
T d1pg4a_ 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATT 323 (643)
T ss_dssp CCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEE
T ss_pred cCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEE
Confidence 3334567899999999999999999999999996654 4444556899999999999999999997 4578999999999
Q ss_pred EEecCC---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCC--CC
Q 004860 426 ALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YN 498 (727)
Q Consensus 426 v~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~--~~ 498 (727)
+++++. +++..++++|++++||++.++|++++.|++... ....++++||.+++|||++++++.+++.+.++ ++
T Consensus 324 vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~ 403 (643)
T d1pg4a_ 324 LMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 403 (643)
T ss_dssp EEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCS
T ss_pred EEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCc
Confidence 998754 367889999999999999999999999987643 34667899999999999999999999988874 57
Q ss_pred cccccccccccccccccCCC-CCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCcccccc-cccc
Q 004860 499 AIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNA-DHEE 576 (727)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~-~~~~ 576 (727)
+++|.||+||+++.++...+ ..+...+++|+|++|++++|+|++|++++.|+. |||+|...+.+....+++. +.+.
T Consensus 404 ~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~--Gel~v~~~~p~~~~~~~~~~~~~~ 481 (643)
T d1pg4a_ 404 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERFE 481 (643)
T ss_dssp CEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHHH
T ss_pred eEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEECCCCCCCCCCce--EEEEEecCCCcccccccCChhhch
Confidence 89999999999876655443 334567899999999999999999999999985 9999954333333333332 2222
Q ss_pred -ccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceE
Q 004860 577 -VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (727)
Q Consensus 577 -~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~ 655 (727)
.+|. ...+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.
T Consensus 482 ~~~~~-----~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~-~~p~V~eaaVvg~~d~~~g-e~ 554 (643)
T d1pg4a_ 482 QTYFS-----TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QA 554 (643)
T ss_dssp HHHHS-----SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EE
T ss_pred hhhcc-----cCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEECCCCC-eE
Confidence 2222 23349999999999999999999999999999999999999999996 9999999999999998888 99
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
++|||+++++...+ +++.+.|+++++++|++|++|+.|+++++||+|+||||+|++|++++..+
T Consensus 555 ~~a~Vv~~~~~~~~-~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~ 618 (643)
T d1pg4a_ 555 IYAYVTLNHGEEPS-PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD 618 (643)
T ss_dssp EEEEEEECTTCCCC-HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred EEEEEEECCCCCCC-HHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcCC
Confidence 99999999987766 56677788899999999999999999999999999999999999999765
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.3e-84 Score=744.85 Aligned_cols=586 Identities=23% Similarity=0.330 Sum_probs=462.7
Q ss_pred CHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeeeecCCCC----CCCCCCcCCCCcccHhhhhccCCCCCCCCCCceEE
Q 004860 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK----SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAI 195 (727)
Q Consensus 120 ~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~----~~~~~~w~~~~~~~~~~~~l~~~~~a~~~pd~~Al 195 (727)
||+.+++++++++.+||.++++.. +.|.+++++++..... ..+..+||.++..|++++|+++|+ +++||++|+
T Consensus 2 ~y~~l~~~Si~~~~~Fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~lN~~~n~ldr~a--~~~pd~~Al 78 (640)
T d1ry2a_ 2 DYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKTPNKKAI 78 (640)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTCTTSEEE
T ss_pred CHHHHHHHHHhCHHHHHHHHHHhh-eeEecCCeEeeccCCccCCCCCCCCcCCCCCchhHHHHHHHHHH--hhCCCCEEE
Confidence 689999999999999999999886 7899999988654321 234568999999999999999876 689999999
Q ss_pred EEecCCCCCCccceecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCCCCHHHHH
Q 004860 196 VWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIA 273 (727)
Q Consensus 196 ~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~~~~~~l~ 273 (727)
++.+. +.+..+++||+||+++++++|++|+ ++ |++||+|+|+++|++++++++|||+++|++++|++|.++++++.
T Consensus 79 i~~~~--~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~ 156 (640)
T d1ry2a_ 79 IFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLR 156 (640)
T ss_dssp EEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHH
T ss_pred EEEec--CCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHH
Confidence 98754 3456679999999999999999997 67 99999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEEEeecccccCCccccchHHHhhhCC---C--cEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCCCCCC
Q 004860 274 TRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---L--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYY 348 (727)
Q Consensus 274 ~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (727)
++++++++++++++....+..+.......+.+... . ....+.................+........ ...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 231 (640)
T d1ry2a_ 157 DRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYK-----TYY 231 (640)
T ss_dssp HHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSC-----SCC
T ss_pred HHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccccccccccccccccccc-----ccc
Confidence 99999999999999987777766665554443321 1 2222222221111111112222323222221 122
Q ss_pred CCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHh-hchhcCCCCCCEEEEecccccccch-HHhHHhhhcCcEEE
Q 004860 349 SPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE-GWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLA 426 (727)
Q Consensus 349 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~lv 426 (727)
......++++++|+|||||||.||||+++|++++..... ....++++++|++++.+|++|+++. +.++++|+.|++++
T Consensus 232 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 311 (640)
T d1ry2a_ 232 PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATL 311 (640)
T ss_dssp CCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEE
T ss_pred ccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEE
Confidence 334456789999999999999999999999997665443 3446789999999999999999986 56889999999999
Q ss_pred EecCC---CChhhHHHHHHHhCCCEEEechHHHHHHHhcCC--CCCCCccceeEEEeecCCCChhhHHHHHhhCCC--Cc
Q 004860 427 LYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY--NA 499 (727)
Q Consensus 427 ~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~--~~ 499 (727)
++++. +++..+++.|+++++|++.++|++++.|.+... ....++++||.+++|||++++++.+++.+.++. +.
T Consensus 312 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~ 391 (640)
T d1ry2a_ 312 VFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIP 391 (640)
T ss_dssp EECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSC
T ss_pred EecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcce
Confidence 98754 367889999999999999999999999987643 345679999999999999999999999988763 56
Q ss_pred ccccccccccccccccCCC--CCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCcccc-cccccc
Q 004860 500 IIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL-NADHEE 576 (727)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~-~~~~~~ 576 (727)
+++.||+||++........ ..+...+++|+|++|++++|+|+++.....+..+.||+++.....+....|+ +++.+.
T Consensus 392 i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~ 471 (640)
T d1ry2a_ 392 IVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYL 471 (640)
T ss_dssp EEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHH
T ss_pred EEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHH
Confidence 9999999999875544333 3345678999999999999999876554333223589988322122122222 333444
Q ss_pred ccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEE
Q 004860 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (727)
Q Consensus 577 ~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l 656 (727)
+.|.. +..+||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.+
T Consensus 472 ~~~~~----~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~d~~~g-e~~ 545 (640)
T d1ry2a_ 472 DTYLN----PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTG-QAV 545 (640)
T ss_dssp HHHTS----SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCCTTS-CCC
T ss_pred hhhcc----CCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-eEE
Confidence 43322 23349999999999999999999999999999999999999999995 9999999999999998888 899
Q ss_pred EEEEEecCCCCCCh------HHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhh
Q 004860 657 VIFVVLKKGFTSQP------DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 721 (727)
Q Consensus 657 ~a~vv~~~~~~~~~------~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 721 (727)
+|||+++++...+. +++++.|+++++++|++|++|+.|+++++||+|+||||+|++|+++++++.
T Consensus 546 ~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~ 616 (640)
T d1ry2a_ 546 AAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGES 616 (640)
T ss_dssp EEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC---
T ss_pred EEEEEEcCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhCCc
Confidence 99999988654321 457788888899999999999999999999999999999999999987653
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=5e-71 Score=622.93 Aligned_cols=495 Identities=17% Similarity=0.183 Sum_probs=385.2
Q ss_pred CCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecCCC
Q 004860 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (727)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~p~ 266 (727)
..|+++|+++.+.+ .++||+||+++++++|++|+++ |++||+|+|+++|++++++++|||+++|++++|+++.
T Consensus 32 ~~P~~~a~~d~~~~------~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~ 105 (541)
T d1lcia_ 32 LVPGTIAFTDAHIE------VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 105 (541)
T ss_dssp TSTTCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTT
T ss_pred CCCCeEEEEeCCCC------eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCeEEEecCCC
Confidence 45999999875432 3899999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCC--CCC
Q 004860 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY--HPR 344 (727)
Q Consensus 267 ~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 344 (727)
++.+++.++|++++++++|+++... +....+...++....++....... .....++.+....... ...
T Consensus 106 ~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 175 (541)
T d1lcia_ 106 YNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKTD----YQGFQSMYTFVTSHLPPGFNE 175 (541)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSSC----BTTBEEHHHHHHHHSCTTCCT
T ss_pred CCHHHHHHHHHhccceEEeeecccc------ccchhccccccccceeeeecCCcc----ccccchhhhhhhhhccccccc
Confidence 9999999999999999999998532 333444444544333332221111 1122233333222111 011
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhch---hcCCCCCCEEEEecccccccchHHhHHhhhc
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (727)
....+.....+++++||+|||||||.||||+++|++++....+... ...+.+++++++.+|+.|..+....+..+..
T Consensus 176 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 255 (541)
T d1lcia_ 176 YDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 255 (541)
T ss_dssp TTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred cccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccccccccccccccccccc
Confidence 1222334456789999999999999999999999998876655443 3467889999999999999998888888888
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
|+.++... ..+......++..+++|.+.++|+++..++........++++|+.+++||+++++....++.+.++...++
T Consensus 256 ~~~~~~~~-~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~ 334 (541)
T d1lcia_ 256 GFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIR 334 (541)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCB
T ss_pred cccccccc-ccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccccccccccccCCceee
Confidence 88887654 55677888999999999999999999999988777777889999999999999999999998888777899
Q ss_pred ccccccccccccccCCCCCCccccccccCCCCceEEEEC-CCCCcCCCCCCeeeeEEE-----ecccCCCCccccccccc
Q 004860 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~ 575 (727)
+.||+||++..++.... .....+++|+|++|++++|+| ++|++++.|+. |||+| ..||++. ++.+
T Consensus 335 ~~YG~TE~~~~~~~~~~-~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~--Gel~v~g~~~~~gY~~~------~~~~ 405 (541)
T d1lcia_ 335 QGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNN------PEAT 405 (541)
T ss_dssp CEECCGGGSSCSEECCC-C---CCCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETTB------HHHH
T ss_pred ecCCccccCceEEecCc-ccCCCCccccccCCCEEEEEECCCCcCCCCCCe--EEEEEccCccCCeeCCC------hhhh
Confidence 99999999986655433 345677999999999999999 56999999996 99998 3455542 2233
Q ss_pred cccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceE
Q 004860 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (727)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~ 655 (727)
...|. +.+||+|||+|++++||+++++||+||+||++|++|+|.|||++|. +||+|.+|+|++++++..+ ++
T Consensus 406 ~~~~~------~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~-~~p~V~~~~v~~~~~~~~g-~~ 477 (541)
T d1lcia_ 406 NALID------KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPDDDAG-EL 477 (541)
T ss_dssp HHHBC------TTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EE
T ss_pred hhccc------CCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-EE
Confidence 33332 3459999999999999999999999999999999999999999995 9999999999999998887 99
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhcCCC-cccceEEEcCCCCCCCCchhhHHHHHHHHhhh
Q 004860 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL-FKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 720 (727)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~-~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 720 (727)
++++|+++++...+.++++++ ++++|+++ ++|..|+++++||+|+||||||++|++++.++
T Consensus 478 ~~a~v~~~~~~~~~~~~l~~~----~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~ 539 (541)
T d1lcia_ 478 PAAVVVLEHGKTMTEKEIVDY----VASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA 539 (541)
T ss_dssp EEEEEEECTTCCCCHHHHHHH----HHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCHHHHHHH----HHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHh
Confidence 999999998887777776665 66667766 47899999999999999999999999998764
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2e-72 Score=633.41 Aligned_cols=509 Identities=21% Similarity=0.211 Sum_probs=373.8
Q ss_pred cCCCCcccHhhhhccCCCCCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHH
Q 004860 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245 (727)
Q Consensus 167 w~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~ 245 (727)
|.-+...|..+ .+++++ +++||++|+++... +.++++||+||+++++++|++|.+. +++||+|+|+++|+++
T Consensus 5 ~~~~~~~~l~~-~l~~~a--~~~pd~~av~~~~~----g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e 77 (534)
T d1v25a_ 5 TMMDEELNLWD-FLERAA--ALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR 77 (534)
T ss_dssp CBCCCCCCTHH-HHHHHH--HHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH
T ss_pred ccCCCCCCHHH-HHHHHH--HHcCCCeEEEEecC----CceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHH
Confidence 33333334433 444443 79999999998664 4556899999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhCCEEeecCCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCC
Q 004860 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPL 325 (727)
Q Consensus 246 ~vva~lA~~kaGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 325 (727)
+++++|||+++|++++|++|.++.+++.++|+++++++++++.... +....+..........+.......
T Consensus 78 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---- 147 (534)
T d1v25a_ 78 HLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKAP---- 147 (534)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCCC----
T ss_pred HHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhh------hhHHHHhhcccccceeEEeecccc----
Confidence 9999999999999999999999999999999999999999987543 223333333332222222111110
Q ss_pred CcCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhh--chhcCCCCCCEEEEe
Q 004860 326 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWP 403 (727)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~d~~l~~ 403 (727)
......... .. .........++++++++|||||||.||||+++|.++++..... ...+....+|++++.
T Consensus 148 -~~~~~~~~~-~~-------~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 218 (534)
T d1v25a_ 148 -EGYLAYEEA-LG-------EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPV 218 (534)
T ss_dssp -TTCEEHHHH-CC-------SCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEEC
T ss_pred -ccccccccc-cc-------ccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccc
Confidence 011111111 11 1122334567899999999999999999999999998655433 345667889999999
Q ss_pred cccccccchHHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCC
Q 004860 404 TNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETS 483 (727)
Q Consensus 404 ~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l 483 (727)
+|+.|..+....+.++..|+++++.....++..+..++.++++|++.++|+++..++........++++||.+++||+++
T Consensus 219 ~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~ 298 (534)
T d1v25a_ 219 VPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAA 298 (534)
T ss_dssp SCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCC
T ss_pred cchhhhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCC
Confidence 99999999888888889999999988788889999999999999999999999999876555567789999999999999
Q ss_pred ChhhHHHHHhhCCCCcccccccccccccccccCCCCC----------CccccccccCCCCceEEEECCCCCcCCCCCCee
Q 004860 484 NVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553 (727)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~gi 553 (727)
++...+++.+. +.++++.||+||++.+++...... ....+++|+|++|++++|+|++++++|.+..++
T Consensus 299 ~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~ 376 (534)
T d1v25a_ 299 PRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKAL 376 (534)
T ss_dssp CHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCC
T ss_pred CHHHHHHHHHh--CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCCCee
Confidence 99998888755 568999999999998765543321 112468999999999999999999998865446
Q ss_pred eeEEE-----ecccCCCCccccccccccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHH
Q 004860 554 GEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628 (727)
Q Consensus 554 Gel~v-----~~~y~~~~~~~~~~~~~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE 628 (727)
|||+| ..||++ +++.+...|..+ .||+|||+|++++||+++++||+||+||++|+||+|.|||
T Consensus 377 Gel~v~g~~v~~gY~~------~~~~t~~~~~~d------g~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE 444 (534)
T d1v25a_ 377 GEVQLKGPWITGGYYG------NEEATRSALTPD------GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLE 444 (534)
T ss_dssp EEEEEESTTSBSSCBT------CHHHHHTTBCTT------SCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHH
T ss_pred EEEEEcCCcccceecC------ChhhhhhhcccC------CCCccCceeEECCCccEEEecccccEEEECCEEECHHHHH
Confidence 99998 345555 334555555433 3999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceeeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchh
Q 004860 629 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKL 708 (727)
Q Consensus 629 ~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKv 708 (727)
++|. +||+|.+|+|++++++..+ +.++|||+++.+.... +++.+ ..+++.||+|++|+.|+++++||+|+||||
T Consensus 445 ~~l~-~~~~V~~a~v~~~~~~~~~-~~l~a~vv~~~~~~~~-~~~~~---~~~~~~l~~~~~P~~i~~~~~lP~t~~GKi 518 (534)
T d1v25a_ 445 NALM-GHPKVKEAAVVAIPHPKWQ-ERPLAVVVPRGEKPTP-EELNE---HLLKAGFAKWQLPDAYVFAEEIPRTSAGKF 518 (534)
T ss_dssp CC-----------CEEEEECSSSS-EEEEECC-----------------------CCCTTTSCSBC--------------
T ss_pred HHHH-hCCCcceEEEEEEECCCCC-eEEEEEEEeCCCCCCH-HHHHH---HHHHhcCCcCCCccEEEEECCCCCCCCccc
Confidence 9995 9999999999999998888 9999999987643322 33332 336788999999999999999999999999
Q ss_pred hHHHHHHHHhhhh
Q 004860 709 LRRVLRDQIKHEL 721 (727)
Q Consensus 709 dR~~L~~~~~~~~ 721 (727)
||++|+++|++.+
T Consensus 519 ~R~~lr~~~~~~~ 531 (534)
T d1v25a_ 519 LKRALREQYKNYY 531 (534)
T ss_dssp CCTTHHHHSTTSS
T ss_pred cHHHHHHHHHhhh
Confidence 9999999987654
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.6e-69 Score=606.76 Aligned_cols=468 Identities=19% Similarity=0.186 Sum_probs=388.5
Q ss_pred CCCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeec
Q 004860 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (727)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl 263 (727)
+|+++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 32 ~a~~~Pd~~Al~~~~~--------~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l 103 (514)
T d1amua_ 32 QVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 103 (514)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEEe
Confidence 4589999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCC
Q 004860 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (727)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (727)
+|.++.+++.+++++++++++|++.... ..+................ ...
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~~~~-----------------~~~---- 153 (514)
T d1amua_ 104 DIEYPKERIQYILDDSQARMLLTQKHLV---------HLIHNIQFNGQVEIFEEDT-----------------IKI---- 153 (514)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHTTSCCCSEEEECCCST-----------------TTT----
T ss_pred CCCCCHHHHHHHHhccCCcEEEEehhhh---------hhhhhhccccccccccccc-----------------ccc----
Confidence 9999999999999999999999987532 2222222111111111000 000
Q ss_pred CCCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCc
Q 004860 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (727)
Q Consensus 344 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~ 423 (727)
........+..++++++|+|||||||.||+|+++|+++..........++...+|++++..|+.|..+++.++.++..|+
T Consensus 154 ~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~ 233 (514)
T d1amua_ 154 REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGA 233 (514)
T ss_dssp SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred cccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 01111223446789999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEecC--CCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCccc
Q 004860 424 TLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (727)
Q Consensus 424 ~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (727)
++++... ..+....++.+..+.++.+..+|..... ....++++++.+++||+++++++..++.. +..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~ 304 (514)
T d1amua_ 234 SLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------LDPERILSIQTLITAGSATSPSLVNKWKE---KVTYI 304 (514)
T ss_dssp EEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------SCTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEE
T ss_pred cccccccccccchhhhhhhhhhhhcccccceeeeccc------ccccccccccEEEEecccCCHHHhhhhcc---ceeEE
Confidence 9998753 2355678889999999999999987543 23556889999999999999998877654 46899
Q ss_pred ccccccccccccccCCC--CCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCcccccccc
Q 004860 502 ESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADH 574 (727)
Q Consensus 502 n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~ 574 (727)
+.||+||++.+++.... ......++.|.++++..+.+.|++++++|.|+. |||+| .+||++ ++..
T Consensus 305 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~--GEl~v~~~~~~~gY~~------~~~~ 376 (514)
T d1amua_ 305 NAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLARGYWK------RPEL 376 (514)
T ss_dssp EEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CHHH
T ss_pred EeeccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCCCe--eEEEEccCcccccccc------cccc
Confidence 99999999976544332 233445678899999999999999999999995 99999 345554 4446
Q ss_pred ccccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCce
Q 004860 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (727)
Q Consensus 575 ~~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~ 654 (727)
+.+.|..+++.++++||+|||+|++|+||+|+++||+||+||++|++|+|.+||++|. +||+|.+|+|++.+++..+ +
T Consensus 377 ~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~-~~~~V~~~~V~~~~~~~~g-~ 454 (514)
T d1amua_ 377 TSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQEQ-P 454 (514)
T ss_dssp HHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTSC-E
T ss_pred cceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-E
Confidence 6778888888888999999999999999999999999999999999999999999996 8999999999999998888 9
Q ss_pred EEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHH
Q 004860 655 VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRD 715 (727)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 715 (727)
+++|+|+++++ .+.++++ ++++++|++|++|..|+++++||+|++|||+|++|++
T Consensus 455 ~~~a~v~~~~~--~~~~~l~----~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 455 YLCAYFVSEKH--IPLEQLR----QFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp EEEEEEEESSC--CCHHHHH----HHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred EEEEEEEcCCC--CCHHHHH----HHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 99999998875 3455555 4577889999999999999999999999999999986
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=3.5e-68 Score=598.80 Aligned_cols=491 Identities=20% Similarity=0.224 Sum_probs=392.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
|+++||++|+++.++ ++||+||+++++++|++|.++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 35 a~~~pd~~Al~~~~~--------~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~vpl~ 106 (536)
T d1mdba_ 35 AAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFAL 106 (536)
T ss_dssp HHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECC
T ss_pred HHHCCCCeEEEECCE--------eEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEEEecC
Confidence 478999999999876 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++.+++.++|++++++++++++........ ..........+.....+..... .....+.+..
T Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-------- 170 (536)
T d1mdba_ 107 PSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR-SLARQVQSKLPTLKNIIVAGEA-------EEFLPLEDLH-------- 170 (536)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEESEETTEEHH-HHHHHHHHHCTTCCCEEEESCC-------TTSEEGGGCC--------
T ss_pred CCCCHHHHHHHHHhhccceEeccchhhhhhhh-hhhhhhhhccccccceeeeecc-------ccccchhhcc--------
Confidence 99999999999999999999998754311111 1111111111111111110000 0111122211
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcCCCCCCEEEEecccccccchHH-hHHhhh-cC
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFL-NG 422 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~l~-~G 422 (727)
..........++|+++|+|||||||.||||++||+++...+......+++.++|++++..++.|.+++.. ++..++ .|
T Consensus 171 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g 250 (536)
T d1mdba_ 171 TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG 250 (536)
T ss_dssp CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTT
T ss_pred cCCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeecccccccccc
Confidence 1112233457899999999999999999999999999999999889999999999999999999988743 333444 45
Q ss_pred cEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcCCCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCcccc
Q 004860 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (727)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (727)
.+++. ...+++..++..+++++++.+..+|+.+..+..........+++++.+++||+++++....++...+ +...+.
T Consensus 251 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~ 328 (536)
T d1mdba_ 251 GRVVL-SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQ 328 (536)
T ss_dssp CEEEE-CSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEE
T ss_pred ccccc-cCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhcc-Cceeee
Confidence 55554 4467888999999999999999999999998877655666789999999999999999988887776 467788
Q ss_pred cccccccccccccCCCCCCccccccccCCC-CceEEEECCCCCcCCCCCCeeeeEEE-----ecccCCCCcccccccccc
Q 004860 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATM-TAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEE 576 (727)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~-~~~~~vld~~~~~~p~G~~giGel~v-----~~~y~~~~~~~~~~~~~~ 576 (727)
.||.+|.+..+...........+++|+|++ +..+.|.+++|++++.|+. |||++ ..||++. ...+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~--Gel~v~g~~~~~gY~~~------~~~~~ 400 (536)
T d1mdba_ 329 VFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRGYYKA------EEHNA 400 (536)
T ss_dssp EEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSSCTTC------HHHHH
T ss_pred ccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCeeccccc--ceeecCCCccccccccc------ccccc
Confidence 888888876665555555556678999976 6677788899999999996 99998 3444442 22333
Q ss_pred ccccccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEE
Q 004860 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (727)
Q Consensus 577 ~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l 656 (727)
..+. ..+||+|||++++++||+|+++||+||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +++
T Consensus 401 ~~~~------~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~-~~p~V~~a~vvg~~~~~~g-~~~ 472 (536)
T d1mdba_ 401 ASFT------EDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG-ERS 472 (536)
T ss_dssp HHBC------TTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEE
T ss_pred cccc------ccCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHH-hCCCccEEEEEEEEcCCCC-eEE
Confidence 3333 2349999999999999999999999999999999999999999995 9999999999999988888 899
Q ss_pred EEEEEecCCCCCChHHHHHHHHHHHHh-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhhhhcc
Q 004860 657 VIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSV 723 (727)
Q Consensus 657 ~a~vv~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 723 (727)
+|||+++++ ..+.++++++ +++ .||+|++|..|+++++||+|+||||||++|++++++++.+
T Consensus 473 ~a~v~~~~~-~~~~~~l~~~----l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~l~a 535 (536)
T d1mdba_ 473 CVFIIPRDE-APKAAELKAF----LRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLA 535 (536)
T ss_dssp EEEEEESSS-CCCHHHHHHH----HHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHT
T ss_pred EEEEEECCC-CCCHHHHHHH----HHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHHHhC
Confidence 999998865 3455666665 544 5999999999999999999999999999999999887764
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=1.4e-64 Score=563.91 Aligned_cols=485 Identities=19% Similarity=0.142 Sum_probs=381.2
Q ss_pred CCCCCCceEEEEecCCCCCCccceecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEeecC
Q 004860 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (727)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~Vai~~~~s~~~vva~lA~~kaGa~~vpl~ 264 (727)
|+++||++|+++.+.+ +++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 12 a~~~pd~~al~~~~~~------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpi~ 85 (503)
T d3cw9a1 12 ATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLN 85 (503)
T ss_dssp HHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHhCCCCeEEEECCCC------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeC
Confidence 4789999999986542 4899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEEeecccccCCccccchHHHhhhCCCcEEEEcCCCCCCCCCCCcCcccHHHHhcccCCCCC
Q 004860 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (727)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (727)
|.++++++.+++++++++++|++.... ....+........++. +.++.........
T Consensus 86 ~~~~~~~i~~~l~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~i~-----------------~~~~~~~~~~~~~ 141 (503)
T d3cw9a1 86 PRLKSAELAELIKRGEMTAAVIAVGRQ-------VADAIFQSGSGARIIF-----------------LGDLVRDGEPYSY 141 (503)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEESSCHH-------HHHHHHHTTCCCEEEE-----------------HHHHEETTEECCC
T ss_pred CCCCHHHHHHHHHhcCCcEEEeecchH-------HHHHHhhhcccccccc-----------------chhhhhhhccccc
Confidence 999999999999999999999886421 1122222222222221 2222221111111
Q ss_pred CCCCCCccCCCCCeEEEEeCCCCCCCCCeEEecChHHHHHHHhhchhcC--CCCCCEEEEecccccccchHH-hHHhhhc
Q 004860 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPVI-LFSSFLN 421 (727)
Q Consensus 345 ~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~~-~~~~l~~ 421 (727)
..........++++++++|||||||.||+|+++|+++...+......+. ....+++++.+|+.|..+... .+.+...
T Consensus 142 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 221 (503)
T d3cw9a1 142 GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALAL 221 (503)
T ss_dssp SCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHT
T ss_pred CCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccc
Confidence 1222334557899999999999999999999999999888877766544 455688999999888777643 4566666
Q ss_pred CcEEEEecCCCChhhHHHHHHHhCCCEEEechHHHHHHHhcC--CCCCCCccceeEEEeecCCCChhhHHHHHhhCCCCc
Q 004860 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (727)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~--~~~~~~l~~Lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (727)
++++++.+ ..++..+...+.+++++++..+|+.+..+.... ......+++||.+++|||+++++...++...+ +..
T Consensus 222 ~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~ 299 (503)
T d3cw9a1 222 DGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGE 299 (503)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CSE
T ss_pred cccccccc-ccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccc-ccc
Confidence 77776654 567889999999999999999999988775532 23445678999999999999999988887765 467
Q ss_pred ccccccccccccccccCCCCCCccccccccCCCCceEEEECCCCCcCCCCCCeeeeEEEecccCCCCccccccccccccc
Q 004860 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYF 579 (727)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~G~~giGel~v~~~y~~~~~~~~~~~~~~~~f 579 (727)
+.+.||.||++..+....... ......+.+.+.....+.+..++.++.|+. |++.+..+......++.++..+++.|
T Consensus 300 ~~~~yg~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--g~~~~~~~~~~~~~~~~~~~~t~~~~ 376 (503)
T d3cw9a1 300 KVNIYGTTEAMNSLYMRQPKT-GTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLNQPQATAEKL 376 (503)
T ss_dssp EEEEEEETTTEEEEEEESCSS-SSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTTCHHHHHHHE
T ss_pred ccccccccccceeeeeccccc-cccccccccccceeeeeecccCcccCCCcc--ccccccccccccccccCChhhhHHHh
Confidence 999999999987655444332 223344556666667777788999999997 77666322222222233444555555
Q ss_pred cccccCCCceeeeeCceEEEecCceEEEEeecCCeeecCceeechHHHHHHHhhcCCCceeeEEEeecCCCCCceEEEEE
Q 004860 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (727)
Q Consensus 580 ~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~~~~~l~a~ 659 (727)
.+ | ||+|||+|++++||+|+++||+||+||++|++|+|.|||++|. +||+|.+|+|++.+++..| +.++||
T Consensus 377 ~~-----g--~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~-~~p~V~~~~v~~~~~~~~g-~~~~a~ 447 (503)
T d3cw9a1 377 QD-----G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLADQRWG-QSVTAC 447 (503)
T ss_dssp ET-----T--EEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEE
T ss_pred cC-----C--ceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHH-hCCCccEEEEEEEECCCCC-eEEEEE
Confidence 32 3 9999999999999999999999999999999999999999995 8999999999999998888 899999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHH
Q 004860 660 VVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQI 717 (727)
Q Consensus 660 vv~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~ 717 (727)
|+++++...+.++++++++ .++||+|++|+.|+++++||+|+||||+|++|++++
T Consensus 448 v~~~~~~~~~~~~l~~~~~---~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 448 VVPRLGETLSADALDTFCR---SSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp EEECTTCCCCHHHHHHHHH---HSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHH---hcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence 9999887777777766532 368999999999999999999999999999999876
|
| >d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: NRPS condensation domain (amide synthase) domain: VibH species: Vibrio cholerae [TaxId: 666]
Probab=97.66 E-value=1.1e-07 Score=92.37 Aligned_cols=131 Identities=5% Similarity=-0.119 Sum_probs=89.7
Q ss_pred HHHcCCCchhhHHHHHHHHHHHHh-hcCCChhHHHHHHHHhhhcCCCCCCCcchhhHHHhhhcccccCCC--CCc--ccc
Q 004860 13 LMKVGLKLEEAEEFDKILKQVISC-SKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKG--PPL--YWF 87 (727)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~~~-~~a~~hq~~Pfe~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~--~~~--~~~ 87 (727)
+.-+++......+|.+.++++.+. .+++.||++||+. |++.++..+.. .++ |+++|++...... +.. .+.
T Consensus 104 ~lP~r~~~~~~~t~~~ll~~v~~~~~~~~~h~~~~~~~-i~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~ 178 (250)
T d1l5aa2 104 SLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNAEQ--SYF--MSPFINILPFESPHFADCQTELK 178 (250)
T ss_dssp EEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCTTC--CBC--CCSEEEEECCCCCCCTTCEEEEE
T ss_pred eeeEEEEeCCCCCHHHHHHHHHHHHHHhhhhcCCCHHH-HHHHhcCCCCC--CCc--cceEEEeeccCccCCCCCceEEE
Confidence 344566667777899888888888 8999999999999 99998754322 233 5555665432211 111 111
Q ss_pred CChhhhcccchHHHHHHh-CCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcceeEecCCeee
Q 004860 88 PSLDQSKLTNLGNALEIH-GPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI 154 (727)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~-~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~ 154 (727)
.. ......|+.+.+... ++.+...+ |+. ++|++.+|+++.++|.++|+++..+|+.+..++
T Consensus 179 ~~-~~~~~~dl~l~v~~~~~~~l~l~~~y~~-----~~~~~~~i~~l~~~~~~ll~~l~~~p~~~~~~l 241 (250)
T d1l5aa2 179 VL-ASGSAEGINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDV 241 (250)
T ss_dssp EE-EECCCCSEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCH
T ss_pred ee-eccceeeEEEEEEEcCCceEEEEEEEeh-----hhCCHHHHHHHHHHHHHHHHHHHhCcCcccchh
Confidence 11 112234566655444 33466667 988 999999999999999999999998888887765
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=90.57 E-value=1.2 Score=46.08 Aligned_cols=103 Identities=16% Similarity=-0.003 Sum_probs=77.6
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHH---HHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.||.+|++...+|. .-.+|.+.+.. .+.......|++++|++....+-+... +..+|+++..|+..+..+.
T Consensus 24 ~pd~~av~~~~~g~-----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 97 (534)
T d1v25a_ 24 FGRKEVVSRLHTGE-----VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANP 97 (534)
T ss_dssp STTCEEEEECTTSC-----EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred cCCCeEEEEecCCc-----eEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 56888877666542 23478776644 444455567899999998888776553 3447899999999999887
Q ss_pred CCChhhHHHHHHHhCCCEEEechHHHHHHHhc
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT 462 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~ 462 (727)
....+++...++..++..+.........+...
T Consensus 98 ~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~ 129 (534)
T d1v25a_ 98 RLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI 129 (534)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHHHH
T ss_pred CCCHHHHHHHHHhhccccccccchhhhhHHHH
Confidence 77788999999999999999888777666543
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=87.12 E-value=0.49 Score=49.11 Aligned_cols=103 Identities=12% Similarity=0.003 Sum_probs=74.6
Q ss_pred EEecChHHHHH---HHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecCCCChhhHHHHHHHhCCCEEE
Q 004860 374 IPWTQLSSIRC---TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG 450 (727)
Q Consensus 374 V~~th~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~ 450 (727)
..+|++.+... +.......|+++||++..+++-+.+. +..+|+++..|+..+.++.....+.+...++..++++++
T Consensus 46 ~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~-~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi 124 (541)
T d1lcia_ 46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 124 (541)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSST-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEe
Confidence 45788876543 33444567899999998887766443 344678999999999888777788999999999999999
Q ss_pred echHHHHHHHhcCCCCCCCccceeEEEeecC
Q 004860 451 TVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481 (727)
Q Consensus 451 ~~P~~l~~l~~~~~~~~~~l~~Lr~i~~gGe 481 (727)
+....+..+.+... .++.++.+++...
T Consensus 125 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 151 (541)
T d1lcia_ 125 VSKKGLQKILNVQK----KLPIIQKIIIMDS 151 (541)
T ss_dssp ECGGGHHHHHHHHH----HCTTCCEEEETTC
T ss_pred eeccccccchhccc----cccccceeeeecC
Confidence 99987776654321 2345565655443
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=82.80 E-value=1.7 Score=44.01 Aligned_cols=93 Identities=11% Similarity=0.011 Sum_probs=69.0
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHH---HHHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSI---RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.||.+|++.-.+| ..+|.+.+. +.+.......++++||++...++-+.+.- ..+|+++..|+..+.++.
T Consensus 15 ~pd~~al~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~v~vpi~~ 86 (503)
T d3cw9a1 15 APDHCALAVPARG-------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVV-IAILALHRLGAVPALLNP 86 (503)
T ss_dssp STTSEEEEEGGGT-------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECCCC-------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHH-HHHHHHHHhCcEEEEeCC
Confidence 5678887664444 347877664 34444455678999999988877665433 337799999999999987
Q ss_pred CCChhhHHHHHHHhCCCEEEechH
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVPS 454 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~ 454 (727)
...++.+..++++.++..+.....
T Consensus 87 ~~~~~~i~~~l~~~~~~~~i~~~~ 110 (503)
T d3cw9a1 87 RLKSAELAELIKRGEMTAAVIAVG 110 (503)
T ss_dssp TSCHHHHHHHHHHTTCSEEEESSC
T ss_pred CCCHHHHHHHHHhcCCcEEEeecc
Confidence 777889999999999999876543
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=82.04 E-value=1.8 Score=45.97 Aligned_cols=95 Identities=16% Similarity=0.060 Sum_probs=70.9
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHH---HHHhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIR---CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.+|.+|+|.. +-.+|. .-.+|.+.+.. .+.......|+++||++..+++-+.... ..+++++..|+..+.++.
T Consensus 85 ~~d~~Ali~~-~~~~~~--~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~i-v~~lA~~~~Gav~v~l~~ 160 (643)
T d1pg4a_ 85 NGDRTAIIWE-GDDTSQ--SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA-VAMLACARIGAVHSVIFG 160 (643)
T ss_dssp HTTSEEEEEE-CSSTTC--EEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEE-ecCCCC--ceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHH-HHHHHHHHhCeEEEecCC
Confidence 4678888654 323333 33578877644 4444445679999999999888776543 447789999999999987
Q ss_pred CCChhhHHHHHHHhCCCEEEec
Q 004860 431 SPLERSFGKFVQDAGVTVLGTV 452 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~ 452 (727)
...++.+...+.+.++.++++.
T Consensus 161 ~~~~~~l~~~l~~~~~~~li~~ 182 (643)
T d1pg4a_ 161 GFSPEAVAGCIIDSSSRLVITA 182 (643)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCHHHHHHHHHhcCCCEEEEc
Confidence 7888899999999999998864
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| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=81.19 E-value=2.9 Score=42.47 Aligned_cols=98 Identities=10% Similarity=-0.037 Sum_probs=75.1
Q ss_pred CCCCeEEEEeCCCCCCCCCeEEecChHHHHHH---HhhchhcCCCCCCEEEEecccccccchHHhHHhhhcCcEEEEecC
Q 004860 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT---AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430 (727)
Q Consensus 354 ~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~G~~lv~~~~ 430 (727)
.||.+|++.- +-.+|.+.+...+ .......+++++|++...++-+... +..+|+++..|+..+..+.
T Consensus 36 ~Pd~~Al~~~---------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~-v~~~la~~~~G~v~v~l~~ 105 (514)
T d1amua_ 36 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 105 (514)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEEC---------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHH-HHHHHHHHHhCcEEEEeCC
Confidence 5788888741 2357887765433 3344567999999998888777654 3446789999999999887
Q ss_pred CCChhhHHHHHHHhCCCEEEechHHHHHHHh
Q 004860 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAWRN 461 (727)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~ 461 (727)
...++.+...++..++..+++.+.....+..
T Consensus 106 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~ 136 (514)
T d1amua_ 106 EYPKERIQYILDDSQARMLLTQKHLVHLIHN 136 (514)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHHTT
T ss_pred CCCHHHHHHHHhccCCcEEEEehhhhhhhhh
Confidence 7788899999999999999998887777654
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