Citrus Sinensis ID: 004872

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720------
Protein Sequence
MEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIINSSPSINRRSPGNGAIPY
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEcccccEEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHccccccEEcEEEEEEEEEEEEEEEEcccccEEEEEEccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccccEEEEcccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccEEEEEccEEEEEEEEEccccccccccEEEEEEcccccEEEEEEEEEcccccccEEEEEEEEEcEEccccccEEEEEcccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccEEEEEEEEEccccccccccccccEEEEEEccEEEEEEcccccccccccEEEEEEEccccEEEEEEEEccccccccEEEEEEEccccccccEEEEEEEcccccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEcccccccccccccccEEEEEEccEEEEEEEEccccccccccEEEEEcccccEEEEEEEccccccccccEEEEEEcccccccccccEEEEcccccccEEEEEEEEEccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHcHHHHHHEEEEEEEccccccEEEEEEEEEcccccEEEEEEEEEcccccEEEEEEEEccccHcccEEEEEEEEEEcccHcccccccccEEEEEEEEcccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHccccccEEEcccccHccccccccEEEEEEEEEccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEccccEEEEEEEEcccccccccccccEEEEEEEEEccccEEEEccccccccHHHcccccccccEEEccccccccEEEEEEEEcccccccccccccccccccccEEEEcEEEccccccEEEEEEEEEccccccccccccccEEEEEEcccccEEEEEEcccccEcEEEEEEEcccccEEEEEEEEccccccccEEEEEEEcHHccccccccEEEEccccccccEEEEEEEccccccccccEccccccccEEEEEEEEEccccccccccccccEEEEEEcccEEEEEEEEccccccccEEEEEEccccEEEEEEEEcccccccccEEEEEEEccccccccccccEEEcccccccEEEEEEEEEcccccccccEccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEcccccccccccccccccc
Coil and Loop (DISEMBL)
mevwpgyinpklsiRFSQIVEKRLKHRKPRLIEKielqefslgstspclglhgtrwsssgdQRVMQlgfdwdanDISILLLAKLAKPLLGTAKIVINSLhikgdllvmpiLEGKAVLYsfvsipdvrigvafgsggsqslpatelpgvSNWLARLINETLVKTLveprrrcyslpavdlrkkAVGGIVYVRVISASKlsrsslrgspsrrqqnysadssleehyedkdlTTFVEIELEELtrrtdarpgsdprwdsMFNMVLHeetgtvrfnlyecipghvkydYLTSCEVKMKyvaddsttfwaigpdsgiiakhaefcgdevemtvpfegvnsgELTVRLVLKEwqfsdgshslnnfhsgsqqslsgssnfisrtgrkinvtvvegkdlmpkdksgkcdpyvklqygkivqrtrtahspnhvwnqkfeldeigggeclmvkcyneeifgdenmgsarvnleglvegsvrdiwvplekvntgelRLQIEatrvddnegsrgqnigsgnGWIELVIVEARDLVAadlrgtsdpyvkvqygdlKKRTKVIFKTlnpqwhqtlefpddgspltlhvrdhnallasssigdcvveyqrlppnqmadkwiplqgvrkgEIHVLITRkvpeldkrtsidsdssstraHKISGQMKQMMVKFQSLIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIinsspsinrrspgngaipy
Flexible Loop (DISEMBL)
mevwpgyinpklsirfSQIVEKRLKHRKPRLIEkielqefslgstspCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLvktlveprrrcyslpavdlrkkavggIVYVRVIsasklsrsslrgspsrrqqnysadssleehyedkdlTTFVEIEleeltrrtdarpgsdprwDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSgsqqslsgssnfisrtgrkinvtvvegkdlmpkdksgkcdpyVKLQYGKIVQrtrtahspnhvwnQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLekvntgelrlqieatrvddnegsrgqnigsgngWIELVIVEARDLVAadlrgtsdpyvkvqygdlkkRTKVIFKTlnpqwhqtleFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADkwiplqgvrkgEIHVLitrkvpeldkrtsidsdssstrahkisgqMKQMMVKFQSLIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEiinsspsinrrspgngaipy
Low Complexity Region (SEG)
MEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISIlllaklakpllgtakIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVrvisasklsrsslrgspsrrQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHsgsqqslsgssNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDKrtsidsdssstrAHKISGQMKQMMVKFQSLIDDDNleelstalseletleDSQEEYMVQLETEQMLLLNKIKELGQEiinsspsinrrspGNGAIPY
Disordered region (IsUnstruct)
**VWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVIS***********************************TTFVEIEL****************WDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFS*****************************KINVTVVEG**********KCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATR***********IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKV**************************************************************VQLETEQMLLLNKIKEL***********************
Disordered Region (DISOPRED)
MEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQF***********************FISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATR***********IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPE****************************************************************************************************
Disordered Region (DISEMBL)
MEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKL**************************EDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHS*********SNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDK****************SGQMKQMMVKFQSLIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIINSSPSINRRSPGNGAIPY
Disordered Region (DISPRO)
MEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLS***********************HYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSD***********SQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIINS****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFVSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIINSSPSINRRSPGNGAIPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	726	2.2.26 [Sep-21-2011]
Q8L706	560	Synaptotagmin-5 OS=Arabid	no	no	0.326	0.423	0.266	1e-18
A0JJX5	569	Synaptotagmin-4 OS=Arabid	no	no	0.326	0.416	0.273	2e-18
Q93XX4	751	C2 domain-containing prot	no	no	0.144	0.139	0.354	5e-13
C9J798	803	Putative Ras GTPase-activ	no	no	0.298	0.270	0.240	1e-11
O43374	803	Ras GTPase-activating pro	no	no	0.298	0.270	0.240	1e-11
O95294	804	RasGAP-activating-like pr	no	no	0.282	0.254	0.279	2e-11
Q9Z268	799	RasGAP-activating-like pr	no	no	0.282	0.256	0.279	4e-11
Q6PFQ7	802	Ras GTPase-activating pro	no	no	0.298	0.270	0.257	4e-11
Q6DN12	878	Multiple C2 and transmemb	no	no	0.369	0.305	0.235	2e-10
Q5RJH2	878	Multiple C2 and transmemb	no	no	0.367	0.304	0.223	5e-10

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 48/285 (16%)

Query: 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH----VWNQKFELD-EIG 435
           + V +V+ K+L  KD  GK DP+ K+    + ++T+ + + N+    +WN+ FE   E  
Sbjct: 264 LEVKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDA 323

Query: 436 GGECLMVKCYNEE-IFGDENMGSARVNLEGLVEGSVRDIWVPLEK--------VNTGELR 486
             + L+V+ Y++E +   E +G A++ L  L  G V+D+W+ L K         N GE+ 
Sbjct: 324 STQHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVH 383

Query: 487 LQI---------------------EATRVDDNEGSRGQNIGSGN-------GWIELVIVE 518
           L++                        RV  N+ +  +N  S         G + + ++ 
Sbjct: 384 LELLYIPYGSGNGIVNPFVTSSMTSLERVLKNDTTDEENASSRKRKDVIVRGVLSVTVIS 443

Query: 519 ARDLVAADLRGTSDPYV--KVQYGDLKKRTKVIFKTLNPQWHQTLEF-PDDG--SPLTLH 573
           A ++   DL G +DPYV   ++    K +T+V+  +LNP W+QT +F  +DG    L L 
Sbjct: 444 AEEIPIQDLMGKADPYVVLSMKKSGAKSKTRVVNDSLNPVWNQTFDFVVEDGLHDMLVLE 503

Query: 574 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHV 618
           V DH+       IG C++   R+   +    W PL   + G++ +
Sbjct: 504 VWDHDT-FGKDYIGRCILTLTRVIMEEEYKDWYPLDESKTGKLQL 547

May be involved in membrane trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 136/293 (46%), Gaps = 56/293 (19%)

Query: 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTR----TAHSPNHVWNQKFE-LDEI 434
           K++V VV+ KDL  KD  GK DPY  +    +  RT+     ++S N +WN+ FE + E 
Sbjct: 265 KLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVED 324

Query: 435 GGGECLMVKCYNEEIFGDENM-GSARVNLEGLVEGSVRDIWVPLEK--------VNTGEL 485
              + L V+ +++E  G   + G+A+V L  LV G V+DIW+ L K         N G++
Sbjct: 325 VSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGKVKDIWLKLVKDLEIQRDTKNRGQV 384

Query: 486 RLQI-----------------------------------EATRVDDNEGSRGQNIGSGNG 510
           +L++                                   +AT +     S+ +++    G
Sbjct: 385 QLELLYCPLGKEGGLKNPFNPDYSLTILEKVLKPESEDSDATDMKKLVTSKKKDVIV-RG 443

Query: 511 WIELVIVEARDLVAADLRGTSDPYVKV--QYGDLKKRTKVIFKTLNPQWHQTLEFPDDGS 568
            + + +V A DL A D  G +D +V +  +  + K +T+V+  +LNP W+QT +F  + +
Sbjct: 444 VLSVTVVAAEDLPAVDFMGKADAFVVITLKKSETKSKTRVVPDSLNPVWNQTFDFVVEDA 503

Query: 569 ---PLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHV 618
               LTL V DH+       IG  ++   R+       +W  L G + G++ V
Sbjct: 504 LHDLLTLEVWDHDK-FGKDKIGRVIMTLTRVMLEGEFQEWFELDGAKSGKLCV 555

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93XX4|C2D61_ARATH C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2

 Score = 77.0 bits (188), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 5/110 (4%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP----DDGSPLT 571
           + EA DL  +DL G +DPYVK + G  + +TK+  KTL+P+WH+  + P    D  S L 
Sbjct: 288 VFEASDLKPSDLNGLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSILN 347

Query: 572 LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 621
           + V D +  +   ++G+C V  +     Q  D W+ LQ ++ G +H+ IT
Sbjct: 348 IEVGDKDRFV-DDTLGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAIT 396

Arabidopsis thaliana (taxid: 3702)

>sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 24/241 (9%)

Query: 381 INVTVVEGKDLMPKDKSGKCDPY--VKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 438
           + + +VEGK+L  KD +G  DPY  VK+    I++      +    W +++++       
Sbjct: 7   LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFH 66

Query: 439 CLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDI--WVPLEKVN-----TGELRLQIEA 491
            +     +E+    +++          +    +    W  L +V+      GE+ L++E 
Sbjct: 67  AVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFSGWAHLTEVDPDEEVQGEIHLRLEV 126

Query: 492 TRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK 551
                  G+R   +          ++EARDL   D  GTSDP+V+V+Y    + T ++ K
Sbjct: 127 W-----PGARACRLRCS-------VLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKK 174

Query: 552 TLNPQWHQTLEFP-DDGS--PLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608
           +  P+W++T EF   +G+   L +   D + +  +  +G  V++ QRL   Q  + W  L
Sbjct: 175 SCYPRWNETFEFELQEGAMEALCVEAWDWDLVSRNDFLGKVVIDVQRLRVVQQEEGWFRL 234

Query: 609 Q 609
           Q
Sbjct: 235 Q 235

Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway.

Homo sapiens (taxid: 9606)

>sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 24/241 (9%)

Query: 381 INVTVVEGKDLMPKDKSGKCDPY--VKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 438
           + + +VEGK+L  KD +G  DPY  VK+    I++      +    W +++++       
Sbjct: 7   LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEEYQVHLPPTFH 66

Query: 439 CLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDI--WVPLEKVN-----TGELRLQIEA 491
            +     +E+    +++          +    +    W  L +V+      GE+ L++E 
Sbjct: 67  AVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFSGWAHLTEVDPDEEVQGEIHLRLEV 126

Query: 492 TRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK 551
                  G+R   +          ++EARDL   D  GTSDP+V+V+Y    + T ++ K
Sbjct: 127 W-----PGARACRLRCS-------VLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKK 174

Query: 552 TLNPQWHQTLEFP-DDGS--PLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608
           +  P+W++T EF   +G+   L +   D + +  +  +G  V++ QRL   Q  + W  L
Sbjct: 175 SCYPRWNETFEFELQEGAMEALCVEAWDWDLVSRNDFLGKVVIDVQRLRVVQQEEGWFRL 234

Query: 609 Q 609
           Q
Sbjct: 235 Q 235

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis.

Homo sapiens (taxid: 9606)

>sp|O95294|RASL1_HUMAN RasGAP-activating-like protein 1 OS=Homo sapiens GN=RASAL1 PE=1 SV=3

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 31/236 (13%)

Query: 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGE 438
           +NV VVEG+ L  KD SG  DPY  ++   ++V RT T   S    W +++ +       
Sbjct: 7   LNVRVVEGRALPAKDVSGSSDPYCLVKVDDEVVARTATVWRSLGPFWGEEYTVHLPLDFH 66

Query: 439 CLMVKCYNEEIFG-DENMGSARVNLEGL-VEGSVRDIWVPLEKVN-----TGELRLQIEA 491
            L     +E+  G D+ +G   ++ E +  +    D W+ L +V+      GE+ L ++ 
Sbjct: 67  QLAFYVLDEDTVGHDDIIGKISLSREAITADPRGIDSWINLSRVDPDAEVQGEICLSVQM 126

Query: 492 TRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK 551
             ++D +G            +   +++ARDL   D+ GTSDP+ +V +G     T  I K
Sbjct: 127 --LEDGQGR----------CLRCHVLQARDLAPRDISGTSDPFARVFWGSQSLETSTIKK 174

Query: 552 TLNPQWHQTLEF---PDDGSPLTLHVRDHNALLASSSIGDCVVEY-----QRLPPN 599
           T  P W + LE    P   SPL + + D + +  +  +G  +VE+     Q+ PP 
Sbjct: 175 TRFPHWDEVLELREMPGAPSPLRVELWDWDMVGKNDFLG--MVEFSPKTLQQKPPK 228

Probable inhibitory regulator of the Ras-cyclic AMP pathway.

Homo sapiens (taxid: 9606)

>sp|Q9Z268|RASL1_MOUSE RasGAP-activating-like protein 1 OS=Mus musculus GN=Rasal1 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 31/236 (13%)

Query: 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGE 438
           +++ VVEG+ L  KD SG  DPY  ++   ++V RT T   S +  W +++ +       
Sbjct: 7   LSIRVVEGRALPAKDVSGSSDPYCLVKVDDQVVARTATIWRSLSPFWGEEYTVHLPLDFH 66

Query: 439 CLMVKCYNEEIFG-DENMGSARVNLEGL-VEGSVRDIWVPLEKVN-----TGELRLQIEA 491
            L     +E+  G D+ +G   ++ E +  +    D W+ L +V+      GE+ L ++ 
Sbjct: 67  HLAFYVLDEDTVGHDDIIGKISLSKEAITADPRGIDSWINLSRVDPDAEVQGEVCLDVKL 126

Query: 492 TRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK 551
                 E +RG+ +          + +ARDL   D+ GTSDP+ +V +G+    T  I K
Sbjct: 127 L-----EDARGRCL-------RCHVRQARDLAPRDISGTSDPFARVFWGNHSLETSTIKK 174

Query: 552 TLNPQWHQTLEF---PDDGSPLTLHVRDHNALLASSSIGDCVVEY-----QRLPPN 599
           T  P W + LE    P   SPL + + D + +  +  +G  +VE+     Q+ PPN
Sbjct: 175 TRFPHWDEVLELREAPGTTSPLRVELWDWDMVGKNDFLG--MVEFTPQTLQQKPPN 228

Probable inhibitory regulator of the Ras-cyclic AMP pathway.

Mus musculus (taxid: 10090)

>sp|Q6PFQ7|RASL2_MOUSE Ras GTPase-activating protein 4 OS=Mus musculus GN=Rasa4 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 24/241 (9%)

Query: 381 INVTVVEGKDLMPKDKSGKCDPY--VKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 438
           +++ +VEGK+L  KD +G  DPY  VK+    I++      +    W + +++       
Sbjct: 7   LSIRIVEGKNLPAKDITGSSDPYCIVKVDNEPIIRTATVWKTLCPFWGEDYQVHLPPTFH 66

Query: 439 CLMVKCYNEEIFG-DENMGSARVNLEGLVEGSV-RDIWVPLEKVN-----TGELRLQIEA 491
            +     +E+    D+ +G   +  + L         W  L +V+      GE+ L++E 
Sbjct: 67  TVAFYVMDEDALSRDDVIGKVCLTRDALASHPKGFSGWTHLVEVDPNEEVQGEIHLRLEV 126

Query: 492 TRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK 551
             V     SR          +   ++EARDL   D  G SDP+V+V Y    + T V+ K
Sbjct: 127 --VPGVHASR----------LRCAVLEARDLAPKDRNGASDPFVRVHYNGRTQETSVVKK 174

Query: 552 TLNPQWHQTLEFP-DDGSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608
           +  P+W++T +F  + G+   L V   D + +  +  +G   V  QRL   Q  + W  L
Sbjct: 175 SCYPRWNETFDFELEKGASEALLVEAWDWDLVSRNDFLGKVAVNVQRLCSAQQEEGWFRL 234

Query: 609 Q 609
           Q
Sbjct: 235 Q 235

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Isoform 2 activates the Ras pathway and promotes RANKL shedding by modulating the expression of MMP14.

Mus musculus (taxid: 10090)

>sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 138/310 (44%), Gaps = 42/310 (13%)

Query: 350 SDGSHSLNNFHSGSQ----QSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVK 405
           SD + S+ + H   Q    ++  G SN  S     + + + EG++L+ +D+ G  DPYVK
Sbjct: 161 SDLNASMTSQHFEEQSVPGEASDGLSNLPSPFAYLLTIHLKEGRNLVVRDRCGTSDPYVK 220

Query: 406 LQY-GKIVQRTRTAH-SPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLE 463
            +  GK + +++  + + N VW++   L      + L VK Y+ ++   + MGSA V L 
Sbjct: 221 FKLNGKTLYKSKVIYKNLNPVWDEIVVLPIQSLDQKLRVKVYDRDLTTSDFMGSAFVILS 280

Query: 464 GLVEGSVRDIWVPLEKVNTGE---------LRLQIEA-----------TRVDDNEGSRGQ 503
            L      +  + LE  N+ E         L L ++             R+  ++ S  +
Sbjct: 281 DLELNRTTEHILKLEDPNSLEDDMGVIVLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIR 340

Query: 504 NIGSG---------NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLN 554
           N+            NG I + ++E +++    +   ++ +V+++ GD + ++K + K+ N
Sbjct: 341 NLRLSESLKKNQLWNGIISITLLEGKNVSGGSM---TEMFVQLKLGDQRYKSKTLCKSAN 397

Query: 555 PQWHQTLE---FPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 611
           PQW +  +   F D    L + V   +       +G C V+   LP  Q     +PL   
Sbjct: 398 PQWQEQFDFHYFSDRMGILDIEVWGKDNKKHEERLGTCKVDISALPLKQANCLELPLDSC 457

Query: 612 RKGEIHVLIT 621
             G + +L+T
Sbjct: 458 L-GALLMLVT 466

Homo sapiens (taxid: 9606)

>sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 142/309 (45%), Gaps = 42/309 (13%)

Query: 351 DGSHSLNNFHSGSQQSLSGSSNFISRT----GRKINVTVVEGKDLMPKDKSGKCDPYVKL 406
           D + S+ + H   + +L  +S+ +S         + + + EG++L+ +D+ G  DPYVK 
Sbjct: 162 DLNASMTSQHFEEESTLGEASDCVSHLPSPFAYLLTIHLKEGRNLVVRDRCGTSDPYVKF 221

Query: 407 QY-GKIVQRTRTAH-SPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEG 464
           +  GK + +++  + + N +W++   L      + L VK Y+ ++   + MGSA V L  
Sbjct: 222 KLNGKTLYKSKVIYKNLNPIWDEIVVLPIQSLDQKLRVKVYDRDLTKSDFMGSAFVVLRD 281

Query: 465 LVEGSVRDIWVPLEKVNTGE---------LRLQIEA-----------TRVDDNEGSRGQN 504
           L      +  + LE  N+ E         L L ++             R+  ++ S  +N
Sbjct: 282 LELNRTTEHILKLEDPNSLEDDMGVIVLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIRN 341

Query: 505 IGSG---------NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNP 555
           +            NG I + ++E +++   ++   ++ +V+++ G+ + ++K + K+ NP
Sbjct: 342 LRLSESLRKNQLWNGIISITLLEGKNVSGGNM---TEMFVQLKLGEQRYKSKTLCKSANP 398

Query: 556 QWHQTLE---FPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR 612
           QW +  +   F D    L + V   ++      +G C V+   LP  Q     +PL+   
Sbjct: 399 QWQEQFDFHYFSDRMGILDIEVWGKDSKKHEERLGTCKVDISALPLKQDNCLELPLESC- 457

Query: 613 KGEIHVLIT 621
           +G + +LIT
Sbjct: 458 QGALLMLIT 466

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	726
255582757	829	synaptotagmin, putative [Ricinus communi	0.973	0.852	0.745	0.0
449439403	817	PREDICTED: extended synaptotagmin-1-like	0.976	0.867	0.734	0.0
359491448	822	PREDICTED: uncharacterized protein LOC10	0.983	0.868	0.755	0.0
224135377	825	plant synaptotagmin [Populus trichocarpa	0.975	0.858	0.754	0.0
297734213	815	unnamed protein product [Vitis vinifera]	0.973	0.867	0.751	0.0
224118810	819	plant synaptotagmin [Populus trichocarpa	0.965	0.855	0.757	0.0
449441149	838	PREDICTED: synaptotagmin-4-like [Cucumis	0.991	0.859	0.712	0.0
357500377	828	Plant synaptotagmin [Medicago truncatula	0.969	0.850	0.723	0.0
147815879	783	hypothetical protein VITISV_035295 [Viti	0.911	0.845	0.734	0.0
356522767	826	PREDICTED: uncharacterized protein LOC10	0.983	0.864	0.718	0.0

>gi|255582757|ref|XP_002532155.1| synaptotagmin, putative [Ricinus communis] gi|223528165|gb|EEF30229.1| synaptotagmin, putative [Ricinus communis]

 Score = 1135 bits (2937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/708 (74%), Positives = 624/708 (88%), Gaps = 1/708 (0%)

Query: 1   MEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSG 60
           +EVW  YI+PKLS RFS +VEKRLK RK +LIE++ELQEFSLGS  PC GL GT WS+SG
Sbjct: 110 LEVWLNYIHPKLSTRFSSMVEKRLKQRKSKLIERVELQEFSLGSFPPCFGLQGTHWSTSG 169

Query: 61  DQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSF 120
           DQR M++GFDWD +DISI+LLAKLAKP+ GTA+IVINSLHIKGDLL+MP+++G+A+LYSF
Sbjct: 170 DQRFMRIGFDWDTSDISIMLLAKLAKPM-GTARIVINSLHIKGDLLLMPVVDGRAILYSF 228

Query: 121 VSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLR 180
           +S P+VRIGVAFGSGGSQSLPATELPGVS+WL +++ +TLVKT+VEPRRRCYSLPAVDLR
Sbjct: 229 ISAPEVRIGVAFGSGGSQSLPATELPGVSSWLVKILTDTLVKTMVEPRRRCYSLPAVDLR 288

Query: 181 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL 240
           KKAVGG+++V VISA KL  S  RGSPSR+QQN S + S EEH++DKDL TFVE+ELE+L
Sbjct: 289 KKAVGGVIHVTVISARKLCTSPFRGSPSRKQQNCSVNCSSEEHFDDKDLQTFVEVELEQL 348

Query: 241 TRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 300
           TRRT+ RPGS PRWDS FNMVLHEETG +RF+LY C P +VK+DYL SCE+K+KYVADDS
Sbjct: 349 TRRTNVRPGSSPRWDSTFNMVLHEETGILRFHLYNCTPNNVKFDYLASCEIKLKYVADDS 408

Query: 301 TTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFH 360
           T FWA+G +SG+IA+ AE CG EVEM VPFEGVNSGEL V+LVLKEWQFSDGSHS N F 
Sbjct: 409 TMFWAVGHNSGVIAELAEICGKEVEMAVPFEGVNSGELIVKLVLKEWQFSDGSHSFNKFP 468

Query: 361 SGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHS 420
             S++S++G SN +SRTGRKINV VVEGKDL  K+KSGKCDPYVKLQYGK +QRTRTA +
Sbjct: 469 VSSRKSMTGLSNLVSRTGRKINVVVVEGKDLSAKEKSGKCDPYVKLQYGKAIQRTRTATA 528

Query: 421 PNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV 480
            N +WNQKFE DEI GGECLM+KCY+EE+FGD+ MGSARV+LEGLVEGS+RD+WVPLEKV
Sbjct: 529 SNAIWNQKFEFDEIEGGECLMIKCYSEEMFGDDGMGSARVSLEGLVEGSIRDVWVPLEKV 588

Query: 481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG 540
           ++GELRLQIEA RVDD EGS+G   GS NGWIELV++EA+DL+AADLRGTSDPYV+VQYG
Sbjct: 589 SSGELRLQIEAVRVDDYEGSKGSIAGSKNGWIELVLIEAKDLIAADLRGTSDPYVRVQYG 648

Query: 541 DLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ 600
           +LKKRTKV++KTLNPQW+QTLEFPDDGSPL LHV+DHNALL +SSIGDCVVEYQ LPPNQ
Sbjct: 649 NLKKRTKVMYKTLNPQWNQTLEFPDDGSPLMLHVKDHNALLPTSSIGDCVVEYQGLPPNQ 708

Query: 601 MADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLI 660
           M+DKWIPLQGV++GEIHV +TRK+PE+ KR S+DS++S T++H+ S QMKQMM+KF SLI
Sbjct: 709 MSDKWIPLQGVKRGEIHVKVTRKIPEIQKRPSLDSEASLTKSHQFSSQMKQMMIKFHSLI 768

Query: 661 DDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEII 708
           +D +LE LSTALSE+E +E+ QEEYMVQLE EQ LLL KIKELGQEI 
Sbjct: 769 EDGDLEGLSTALSEMEGIEEMQEEYMVQLEMEQTLLLEKIKELGQEIF 816

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439403|ref|XP_004137475.1| PREDICTED: extended synaptotagmin-1-like [Cucumis sativus] gi|449486832|ref|XP_004157416.1| PREDICTED: extended synaptotagmin-1-like [Cucumis sativus]

 Score = 1121 bits (2899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/716 (73%), Positives = 620/716 (86%), Gaps = 7/716 (0%)

Query: 1   MEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSG 60
           MEVWP Y NPKLS +F+  V KRLK RK RLIEKIEL +FSLGS  P LGL GTRWS+ G
Sbjct: 90  MEVWPNYFNPKLSTKFTSTVNKRLKDRKSRLIEKIELLDFSLGSCPPSLGLSGTRWSTCG 149

Query: 61  DQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSF 120
           D+R+M L FDWD N++SILL AKL KP +GTA+IVINSLHIKGDL++MPIL+G+AVL+SF
Sbjct: 150 DERIMHLSFDWDTNEMSILLQAKLGKPFMGTARIVINSLHIKGDLVLMPILDGRAVLFSF 209

Query: 121 VSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLR 180
           V+ PDVRIGVAFGSGGSQSLPATELPGVS+WL ++  +TLV+T+VEPRRRC+SLPAVDLR
Sbjct: 210 VTTPDVRIGVAFGSGGSQSLPATELPGVSSWLVKIFTDTLVRTMVEPRRRCFSLPAVDLR 269

Query: 181 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADS-SLEEHYEDKDLTTFVEIELEE 239
           KKAVGGIVYV VISA KL RSSL+GSP+RRQQ+YSA++ S  EH  DKD+ TFVE+ELE+
Sbjct: 270 KKAVGGIVYVTVISARKLYRSSLKGSPTRRQQSYSANNGSFGEHLTDKDMQTFVEVELEK 329

Query: 240 LTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD 299
           L+R+TDAR GSDP+W++ FNM+LHE+TGT+RF+LYE  P HVK+DYL SCEVKMKY ADD
Sbjct: 330 LSRKTDARSGSDPQWNTTFNMILHEDTGTLRFHLYEYNPSHVKHDYLASCEVKMKYAADD 389

Query: 300 STTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNF 359
           STTFWAIGPDS ++AK+A+FCG EVEM +PFEG + GEL VRLVLKEW FSDGSHS N +
Sbjct: 390 STTFWAIGPDSSVVAKYADFCGKEVEMDIPFEGAHCGELRVRLVLKEWMFSDGSHSSNRY 449

Query: 360 HSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH 419
           H  SQQSL G+S+F+S TGRKIN+TVVEGKDL  KDK+GKCDPYVKLQYGK +QRTRTAH
Sbjct: 450 HVSSQQSLYGASSFLSSTGRKINITVVEGKDLPTKDKNGKCDPYVKLQYGKALQRTRTAH 509

Query: 420 SPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEK 479
           S N  WNQKFE DEI GGE L +KC  E+IFG++N GSARVNLEGLVEGSVRD+W+PLEK
Sbjct: 510 SFNPTWNQKFEFDEIAGGEYLKLKCLTEDIFGNDNTGSARVNLEGLVEGSVRDVWIPLEK 569

Query: 480 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY 539
           VN+GELRLQIEA RVDDNEGS+G ++   NGWIELV++EARDLVAAD+RGTSDPYV+VQY
Sbjct: 570 VNSGELRLQIEAIRVDDNEGSKGSSLAPTNGWIELVLIEARDLVAADIRGTSDPYVRVQY 629

Query: 540 GDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN 599
           G LKKRTK+++KTL+PQW+Q LEFPD+GSPL LHV+DHNALL +SSIGDCVVEYQ LPPN
Sbjct: 630 GKLKKRTKIMYKTLSPQWNQVLEFPDNGSPLLLHVKDHNALLPTSSIGDCVVEYQGLPPN 689

Query: 600 QMADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSS------STRAHKISGQMKQMM 653
           QM DKWIPLQGV++GEIH+ IT++VPELDKR+S+DS +S        +AH++S QMKQMM
Sbjct: 690 QMFDKWIPLQGVKRGEIHIQITKRVPELDKRSSLDSKTSLDSEFPMNKAHQVSSQMKQMM 749

Query: 654 VKFQSLIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIIN 709
            K Q+ I+D NLE L+TA+SELE+LED QEEYMVQLE EQMLL+NKIKELGQE +N
Sbjct: 750 NKLQTFIEDSNLEGLATAMSELESLEDLQEEYMVQLENEQMLLINKIKELGQEFLN 805

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491448|ref|XP_002276429.2| PREDICTED: uncharacterized protein LOC100262742 [Vitis vinifera]

 Score = 1115 bits (2885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/720 (75%), Positives = 627/720 (87%), Gaps = 6/720 (0%)

Query: 1   MEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSG 60
           ME+WP Y+NPKLS+RFS IVEKRLKHRK  LIEKIELQ FSLGS+ P LGLHGT+WS++G
Sbjct: 104 MEIWPNYLNPKLSLRFSSIVEKRLKHRKSGLIEKIELQGFSLGSSPPVLGLHGTQWSATG 163

Query: 61  DQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSF 120
           DQ++M+LGFDWD  D+SI+LLAKLAKPLLGTA+IVINSLHIKGDLL+MPIL+G+A LYSF
Sbjct: 164 DQKIMRLGFDWDTTDLSIMLLAKLAKPLLGTARIVINSLHIKGDLLLMPILDGRAFLYSF 223

Query: 121 VSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLR 180
           +S P+VRIGVAFGSGGSQSLPATELPGVS+WL +L  +TLV+T+VEPRRRCYSLPAVDLR
Sbjct: 224 ISPPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLFTDTLVRTMVEPRRRCYSLPAVDLR 283

Query: 181 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL 240
           KKAVGG++YV VISASKLSRSSL+GSP RRQQ+ S D   EEH +DK L TFVE+EL EL
Sbjct: 284 KKAVGGVIYVTVISASKLSRSSLKGSPLRRQQSCSIDGISEEHLDDKYLQTFVEVELGEL 343

Query: 241 TRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 300
           TRRTD R GS PRWDS+FNM+LHE+TGT+RF LYE  P +VKYDYL SCE+KMKYVADDS
Sbjct: 344 TRRTDVRVGSSPRWDSLFNMILHEDTGTLRFQLYESTPSNVKYDYLASCEIKMKYVADDS 403

Query: 301 TTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFH 360
           T FWAIG +S +IAKHAEFCG EVEM VPFEG NSGEL VRLV+KEWQF+DGSHS NNF 
Sbjct: 404 TAFWAIGSESSVIAKHAEFCGKEVEMVVPFEGANSGELMVRLVVKEWQFTDGSHSSNNFR 463

Query: 361 SGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H 419
              QQSL GSSNF S TGRKIN+TVVEGKDL+  +KSG+CDPYVKLQYGK+ QRTRT  H
Sbjct: 464 VSPQQSLYGSSNFASGTGRKINITVVEGKDLI-ANKSGRCDPYVKLQYGKVPQRTRTVPH 522

Query: 420 SPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEK 479
             +  WNQKFE DEIGGGE L +KC+NEE FGD+N+G+ARV+LEGLVEGS+RD+WVPLEK
Sbjct: 523 CSSPTWNQKFEFDEIGGGEYLKIKCFNEETFGDDNIGNARVSLEGLVEGSIRDVWVPLEK 582

Query: 480 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY 539
           VNTGELRL +E   +DD E +   N GSGNGW+ELV+VEARDL+AADLRGTSDPYV+VQY
Sbjct: 583 VNTGELRLLLEVVSLDDYEVA---NAGSGNGWVELVLVEARDLIAADLRGTSDPYVRVQY 639

Query: 540 GDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN 599
           G LKKRTKV+FKTLNPQW+QTLEFPDDGSPL LHV+DHNALL +SSIGDCVVEYQRLPPN
Sbjct: 640 GSLKKRTKVMFKTLNPQWNQTLEFPDDGSPLELHVKDHNALLPTSSIGDCVVEYQRLPPN 699

Query: 600 QMADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSS-TRAHKISGQMKQMMVKFQS 658
           QMADKWIPLQGV++GEIHV ITRK+PE+ +R S++S+ SS  +AH++S QMKQMM K ++
Sbjct: 700 QMADKWIPLQGVKRGEIHVQITRKIPEIQRRPSLESEPSSLIKAHQVSSQMKQMMNKLET 759

Query: 659 LIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIINSSPSINRRS 718
            I+D NLE LS  +SELE+L+D+QEEYMVQLETEQMLLLNKI ELGQE  NS PS+ RRS
Sbjct: 760 QIEDGNLEGLSAVVSELESLQDTQEEYMVQLETEQMLLLNKITELGQEFFNSPPSLRRRS 819

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135377|ref|XP_002322058.1| plant synaptotagmin [Populus trichocarpa] gi|222869054|gb|EEF06185.1| plant synaptotagmin [Populus trichocarpa]

 Score = 1110 bits (2872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/708 (75%), Positives = 626/708 (88%)

Query: 1   MEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSG 60
           ME+W  Y+NPKL+ RFS IVEKRLK R+ +LIEKIELQEFSLGS  P LG HGT WS+SG
Sbjct: 105 MEIWTSYMNPKLATRFSSIVEKRLKQRRSKLIEKIELQEFSLGSCPPYLGPHGTCWSTSG 164

Query: 61  DQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSF 120
           DQR+M LGFDWD +D+SILLLAKLAKPL+GTA+IVINSLHIKG+LL+MP+L+G+AVLYSF
Sbjct: 165 DQRIMNLGFDWDTSDMSILLLAKLAKPLMGTARIVINSLHIKGELLLMPVLDGRAVLYSF 224

Query: 121 VSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLR 180
           VS P+VRIGVAFGSGGSQSLPATELPGVS+WL +++ +TLVKT+VEP RRCY LPAVDLR
Sbjct: 225 VSTPEVRIGVAFGSGGSQSLPATELPGVSSWLVKVLTDTLVKTMVEPHRRCYCLPAVDLR 284

Query: 181 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL 240
           KKAVGGIVYV VISA KLSRS+LRGSP RR+Q++S + SL EH++D+DL TFVE+EL +L
Sbjct: 285 KKAVGGIVYVSVISARKLSRSNLRGSPPRREQSHSLNGSLVEHFDDEDLRTFVEVELGQL 344

Query: 241 TRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 300
           TRRT+ R GS PRWDS FNMVLHE+TGT+R +LY C P  VKYDYL SCE+KMKY ADDS
Sbjct: 345 TRRTEVRLGSSPRWDSTFNMVLHEDTGTLRLHLYNCPPNSVKYDYLASCEIKMKYAADDS 404

Query: 301 TTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFH 360
           T FWAIGPDSG+IAK AEFCG+EVEM VPFEGV SGELTV+LV+KEWQFSDGS SLN F+
Sbjct: 405 TAFWAIGPDSGVIAKRAEFCGNEVEMVVPFEGVTSGELTVKLVVKEWQFSDGSLSLNKFN 464

Query: 361 SGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHS 420
             S +S+ GSSN +SRTGRKINV ++EGKDL+ K++SGKCDPYVKLQYGK++Q+TRTAH+
Sbjct: 465 VSSLKSMYGSSNLLSRTGRKINVAIMEGKDLISKERSGKCDPYVKLQYGKVLQKTRTAHN 524

Query: 421 PNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV 480
            N  WNQKFE DEI    CL +KCY+EEIFGDEN+GSARVNLEGL+EGS+RDIWVPLE+V
Sbjct: 525 SNPFWNQKFEFDEIVDDGCLKIKCYSEEIFGDENIGSARVNLEGLLEGSIRDIWVPLERV 584

Query: 481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG 540
           N+GELRLQIEA RV+D+EGSRG   GS NGWIEL++VEA+DL+AADLRGTSDPYV+VQYG
Sbjct: 585 NSGELRLQIEAVRVNDSEGSRGSVSGSFNGWIELILVEAKDLIAADLRGTSDPYVRVQYG 644

Query: 541 DLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ 600
            LKKRTKV++KTLNPQW+QTLEFPDDGSPL LHV+D+NALL + SIGDCVVEYQ LPPNQ
Sbjct: 645 SLKKRTKVMYKTLNPQWNQTLEFPDDGSPLELHVKDYNALLPTYSIGDCVVEYQGLPPNQ 704

Query: 601 MADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLI 660
            +DKWIPLQGV +GEIHV ITRKVPEL  R+S+++D+S T++H+IS QMKQ M+K QSLI
Sbjct: 705 TSDKWIPLQGVTRGEIHVRITRKVPELQTRSSLEADASLTKSHQISNQMKQSMIKLQSLI 764

Query: 661 DDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEII 708
           +D NLE LSTALSE+++LED QEEY VQLETEQMLLLNKIK+LGQEI+
Sbjct: 765 EDGNLEGLSTALSEMQSLEDIQEEYTVQLETEQMLLLNKIKQLGQEIM 812

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734213|emb|CBI15460.3| unnamed protein product [Vitis vinifera]

 Score = 1107 bits (2864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/720 (75%), Positives = 622/720 (86%), Gaps = 13/720 (1%)

Query: 1   MEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSG 60
           ME+WP Y+NPKLS+RFS IVEKRLKHRK  LIEKIELQ FSLGS+ P LGLHGT+WS++G
Sbjct: 104 MEIWPNYLNPKLSLRFSSIVEKRLKHRKSGLIEKIELQGFSLGSSPPVLGLHGTQWSATG 163

Query: 61  DQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSF 120
           DQ++M+LGFDWD  D+SI+LLAKLAKPLLGTA+IVINSLHIKGDLL+MPIL+G+A LYSF
Sbjct: 164 DQKIMRLGFDWDTTDLSIMLLAKLAKPLLGTARIVINSLHIKGDLLLMPILDGRAFLYSF 223

Query: 121 VSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLR 180
           +S P+VRIGVAFGSGGSQSLPATELPGVS+WL +L  +TLV+T+VEPRRRCYSLPAVDLR
Sbjct: 224 ISPPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLFTDTLVRTMVEPRRRCYSLPAVDLR 283

Query: 181 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL 240
           KKAVGG++YV VISASKLSRSSL+GSP RRQQ+ S D   EEH +DK L TFVE+EL EL
Sbjct: 284 KKAVGGVIYVTVISASKLSRSSLKGSPLRRQQSCSIDGISEEHLDDKYLQTFVEVELGEL 343

Query: 241 TRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 300
           TRRTD R GS PRWDS+FNM+LHE+TGT+RF LYE  P +VKYDYL SCE+KMKYVADDS
Sbjct: 344 TRRTDVRVGSSPRWDSLFNMILHEDTGTLRFQLYESTPSNVKYDYLASCEIKMKYVADDS 403

Query: 301 TTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFH 360
           T FWAIG +S +IAKHAEFCG EVEM VPFEG NSGEL VRLV+KEWQF+DGSHS NNF 
Sbjct: 404 TAFWAIGSESSVIAKHAEFCGKEVEMVVPFEGANSGELMVRLVVKEWQFTDGSHSSNNFR 463

Query: 361 SGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H 419
              QQSL GSSNF S TGRKIN+TVVEGKDL+  +KSG+CDPYVKLQYGK+ QRTRT  H
Sbjct: 464 VSPQQSLYGSSNFASGTGRKINITVVEGKDLI-ANKSGRCDPYVKLQYGKVPQRTRTVPH 522

Query: 420 SPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEK 479
             +  WNQKFE DEIGGGE L +KC+NEE FGD+N+G+ARV+LEGLVEGS+RD+WVPLEK
Sbjct: 523 CSSPTWNQKFEFDEIGGGEYLKIKCFNEETFGDDNIGNARVSLEGLVEGSIRDVWVPLEK 582

Query: 480 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY 539
           VNTGELRL +E             N GSGNGW+ELV+VEARDL+AADLRGTSDPYV+VQY
Sbjct: 583 VNTGELRLLLEVV----------ANAGSGNGWVELVLVEARDLIAADLRGTSDPYVRVQY 632

Query: 540 GDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN 599
           G LKKRTKV+FKTLNPQW+QTLEFPDDGSPL LHV+DHNALL +SSIGDCVVEYQRLPPN
Sbjct: 633 GSLKKRTKVMFKTLNPQWNQTLEFPDDGSPLELHVKDHNALLPTSSIGDCVVEYQRLPPN 692

Query: 600 QMADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSS-TRAHKISGQMKQMMVKFQS 658
           QMADKWIPLQGV++GEIHV ITRK+PE+ +R S++S+ SS  +AH++S QMKQMM K ++
Sbjct: 693 QMADKWIPLQGVKRGEIHVQITRKIPEIQRRPSLESEPSSLIKAHQVSSQMKQMMNKLET 752

Query: 659 LIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIINSSPSINRRS 718
            I+D NLE LS  +SELE+L+D+QEEYMVQLETEQMLLLNKI ELGQE  NS PS+ RRS
Sbjct: 753 QIEDGNLEGLSAVVSELESLQDTQEEYMVQLETEQMLLLNKITELGQEFFNSPPSLRRRS 812

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118810|ref|XP_002317912.1| plant synaptotagmin [Populus trichocarpa] gi|222858585|gb|EEE96132.1| plant synaptotagmin [Populus trichocarpa]

 Score = 1102 bits (2851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/708 (75%), Positives = 624/708 (88%), Gaps = 7/708 (0%)

Query: 1   MEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSG 60
           ME+W  Y+NPKL+IRFS IVEKRLK ++ +L+EK+ELQEFSLGS  P LGLHGTRWS+SG
Sbjct: 106 MEIWMNYMNPKLAIRFSSIVEKRLKQQRLKLMEKLELQEFSLGSCPPSLGLHGTRWSTSG 165

Query: 61  DQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSF 120
           DQR+M LGFDWD+ D+SILLLAKLAKPL+GTA+IVINSLHIKG+LL+MP+L+G+AVLYSF
Sbjct: 166 DQRIMHLGFDWDSKDMSILLLAKLAKPLMGTARIVINSLHIKGELLLMPVLDGRAVLYSF 225

Query: 121 VSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLR 180
           VSIP+VRIGVAFGSGGSQSLPATELPGVS+WL ++  +TLVKT++EPRRRC+SLPAVDLR
Sbjct: 226 VSIPEVRIGVAFGSGGSQSLPATELPGVSSWLVKVFTDTLVKTMIEPRRRCFSLPAVDLR 285

Query: 181 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL 240
           KKAVGGIVYV VISASKLSRS+LRGSP RR      + S  EH++DK L TFVE+EL  L
Sbjct: 286 KKAVGGIVYVSVISASKLSRSNLRGSPPRR-----VNGSFIEHFDDKYLQTFVEVELGHL 340

Query: 241 TRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 300
           TRRTD RPGS+PRWDS FNM LHEETGT+R +LY   P  VKYDYL SCE+KMKYVADDS
Sbjct: 341 TRRTDVRPGSNPRWDSTFNMFLHEETGTLRLHLYNRPPNSVKYDYLASCEIKMKYVADDS 400

Query: 301 TTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFH 360
           TTFWAIGPDSG+IAKHAE CG EVEM VPFEGV SGELTV+LV+KEW FSDGSHSLNN  
Sbjct: 401 TTFWAIGPDSGVIAKHAEICGKEVEMVVPFEGVTSGELTVKLVVKEWLFSDGSHSLNNV- 459

Query: 361 SGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHS 420
             SQ+S+ GSSN +SRTGRKINV V+EGK L+ K++SGKCDPYVKLQYGK++Q+TRTAHS
Sbjct: 460 -SSQKSIYGSSNILSRTGRKINVAVMEGKGLISKERSGKCDPYVKLQYGKVLQKTRTAHS 518

Query: 421 PNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV 480
            N +WNQKFE DEI    CL +KCY+EEIFGDE++GSARVNLEGL+EG +RD+WVPLEKV
Sbjct: 519 SNPLWNQKFEFDEIVDDRCLKIKCYSEEIFGDESIGSARVNLEGLMEGFIRDMWVPLEKV 578

Query: 481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG 540
           NTGELRLQIEA +V+D+EGSRG   GS NG IELV+VEA+DL+AADLRGTSDPYV+VQYG
Sbjct: 579 NTGELRLQIEAVQVNDSEGSRGSMSGSFNGLIELVLVEAKDLIAADLRGTSDPYVRVQYG 638

Query: 541 DLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ 600
            LKKRTKV++KTLNP W+QTLEFPDDGSPL LHV+D+NALL + SIGDCVVEYQ LPPNQ
Sbjct: 639 SLKKRTKVMYKTLNPHWNQTLEFPDDGSPLELHVKDYNALLPTYSIGDCVVEYQGLPPNQ 698

Query: 601 MADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLI 660
           M+DKWIPLQGV +GEIHV ITRKVPEL  R S++SD+S  ++H+IS QMKQ+M+KFQSLI
Sbjct: 699 MSDKWIPLQGVTRGEIHVRITRKVPELQARNSLESDTSLIKSHQISNQMKQLMIKFQSLI 758

Query: 661 DDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEII 708
           ++ +LE LSTALSE+++LED QEEYMVQ+ETEQMLLLNKIKELGQEI+
Sbjct: 759 EEGSLEGLSTALSEMQSLEDMQEEYMVQIETEQMLLLNKIKELGQEIM 806

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441149|ref|XP_004138346.1| PREDICTED: synaptotagmin-4-like [Cucumis sativus] gi|449477454|ref|XP_004155027.1| PREDICTED: synaptotagmin-4-like [Cucumis sativus]

 Score = 1048 bits (2710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/727 (71%), Positives = 621/727 (85%), Gaps = 7/727 (0%)

Query: 2   EVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGD 61
           E+WP YINPKLS++FS IVEKRLKHR+P+LIE+IEL EFSLGS  P LGL GT+WS+SG+
Sbjct: 112 EIWPNYINPKLSLKFSTIVEKRLKHRRPKLIERIELLEFSLGSCPPGLGLRGTQWSTSGN 171

Query: 62  QRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFV 121
           QR+M+LGFDWD N++SI+LLAKLA P  GTA+IVINS+HI GDLL+ PIL+G+A+LYSFV
Sbjct: 172 QRIMRLGFDWDTNEMSIMLLAKLAMPFTGTARIVINSIHIMGDLLLRPILDGRAILYSFV 231

Query: 122 SIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRK 181
             P+VRIGVAFGSGGSQSLPATELPGVS+WL +L+ + +V+T+VEPRRRC+SLPAVDL K
Sbjct: 232 FTPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLLTDFIVRTMVEPRRRCFSLPAVDLGK 291

Query: 182 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKD-LTTFVEIELEEL 240
           KAV G +YV VISASKLSR+SLRG+ SR+  +   +S L+E+  DKD L TFVE+EL+EL
Sbjct: 292 KAVSGTIYVTVISASKLSRNSLRGNSSRKPLSTYMNSPLDENLIDKDDLQTFVEVELDEL 351

Query: 241 TRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 300
           +RRT  R GS+P W+S FNM+LHE+TGT+RFNLYE  P +VKYDYL SCEVKMKY ADDS
Sbjct: 352 SRRTAVRLGSNPVWNSTFNMILHEDTGTLRFNLYESNPSNVKYDYLASCEVKMKYAADDS 411

Query: 301 TTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFH 360
           T+FWAIG DS +IAKH+EFCG EVEM VPFEGV+ GELTV+L++KEWQFSDGSHS +NF 
Sbjct: 412 TSFWAIGSDSEVIAKHSEFCGKEVEMVVPFEGVDCGELTVKLIVKEWQFSDGSHSSHNFQ 471

Query: 361 SGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHS 420
              QQS++GSSNF SRTGRK+ +T+VEGKDL  KDKSGKC+ YVKL+YGK + +TRT  S
Sbjct: 472 VRPQQSVNGSSNFASRTGRKMAITLVEGKDLSLKDKSGKCESYVKLEYGKALLKTRTGIS 531

Query: 421 PNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV 480
            N  WNQKFELDEIGGGE L VKC+  +IFGDEN+G+ARVNLEGL EG VRD+WVPLEKV
Sbjct: 532 VNPNWNQKFELDEIGGGEYLKVKCFGVDIFGDENIGTARVNLEGLHEGVVRDVWVPLEKV 591

Query: 481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG 540
           N+GELRL IEA + DD EGSRG NIGS NGWIELVI+EA+DLVAAD+ GTSDPYV+VQYG
Sbjct: 592 NSGELRLMIEAVKADDYEGSRGSNIGSNNGWIELVIIEAKDLVAADIGGTSDPYVRVQYG 651

Query: 541 DLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ 600
           +LKKRTKV+FKTLNP W+QTLEFPDDGSPL LHV+DHNALL +SSIGDCVVEYQRLPPNQ
Sbjct: 652 NLKKRTKVMFKTLNPHWNQTLEFPDDGSPLLLHVKDHNALLPTSSIGDCVVEYQRLPPNQ 711

Query: 601 MADKWIPLQGVRKGEIHVLITRKVPELDK------RTSIDSDSSSTRAHKISGQMKQMMV 654
           MADKWIPLQGV++GEIHV ITRKVP+L+K        S DS+SS T+AH++S QMKQ + 
Sbjct: 712 MADKWIPLQGVKRGEIHVQITRKVPDLEKERRLSLEPSSDSESSVTKAHQVSSQMKQTIS 771

Query: 655 KFQSLIDDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIINSSPSI 714
           KF +LI++ NL+ LS  L+ELE LE+ QEEY++QLETEQMLL++K+KELGQEI++SS + 
Sbjct: 772 KFHALIEEANLDGLSAPLNELERLEELQEEYILQLETEQMLLISKVKELGQEILSSSSTT 831

Query: 715 NRRSPGN 721
           + RS GN
Sbjct: 832 SWRSSGN 838

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500377|ref|XP_003620477.1| Plant synaptotagmin [Medicago truncatula] gi|355495492|gb|AES76695.1| Plant synaptotagmin [Medicago truncatula]

 Score = 1046 bits (2704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/709 (72%), Positives = 611/709 (86%), Gaps = 5/709 (0%)

Query: 2   EVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGD 61
           E+WP Y NPKLS R S IVE RLK RKPR +E++ELQEFSLGS  P L L G RWS+ GD
Sbjct: 108 EIWPNYFNPKLSSRLSAIVEARLKLRKPRFLERVELQEFSLGSCPPSLALQGMRWSTIGD 167

Query: 62  QRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFV 121
           QRVMQLGFDWD +++SILLLAKLAKPL+GTA+IVINSLHIKGDL+  PIL+GKA+LYSFV
Sbjct: 168 QRVMQLGFDWDTHEMSILLLAKLAKPLMGTARIVINSLHIKGDLIFTPILDGKALLYSFV 227

Query: 122 SIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRK 181
           S P+VR+GVAFGSGGSQSLPATE PGVS+WL +L  +TLVKT+VEPRRRC++LPAVDLRK
Sbjct: 228 SAPEVRVGVAFGSGGSQSLPATEWPGVSSWLEKLFTDTLVKTMVEPRRRCFTLPAVDLRK 287

Query: 182 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELT 241
           KAVGGI+YVRVISA+KLS SS + S  RRQQ+ S + S E+  +DKDL TFVE+E+EELT
Sbjct: 288 KAVGGIIYVRVISANKLSSSSFKAS--RRQQSGSTNGSSEDVSDDKDLHTFVEVEIEELT 345

Query: 242 RRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDST 301
           RRTD R GS PRWD+ FNMVLH+ TGT+RFNLYECIP +VK DYL SCE+K+++V DDST
Sbjct: 346 RRTDVRLGSTPRWDAPFNMVLHDNTGTLRFNLYECIPNNVKCDYLGSCEIKLRHVEDDST 405

Query: 302 TFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHS 361
             WA+GPDSGIIAK A+FCGDE+EM VPFEG NSGEL V +V+KEWQFSDG+HSLNN  +
Sbjct: 406 IMWAVGPDSGIIAKQAQFCGDEIEMVVPFEGTNSGELKVSIVVKEWQFSDGTHSLNNLRN 465

Query: 362 GSQQSLSGSSNFISRTGRKINVTVVEGKDLMP-KDKSGKCDPYVKLQYGKIVQRTRTAHS 420
            SQQSL+GSSN   RTG+K+ +TVVEGKDL   K+K+GK DPY+KLQYGK++Q+T+T+H+
Sbjct: 466 NSQQSLNGSSNIQLRTGKKLKITVVEGKDLAAAKEKTGKFDPYIKLQYGKVMQKTKTSHT 525

Query: 421 PNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV 480
           PN VWNQ  E DE+GGGE L +K + EE+FGDEN+GSA+VNLEGLV+GSVRD+W+PLE+V
Sbjct: 526 PNPVWNQTIEFDEVGGGEYLKLKVFTEELFGDENIGSAQVNLEGLVDGSVRDVWIPLERV 585

Query: 481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG 540
            +GE+RL+IEA +VDD EGS G    SGNGWIELV++E RDLVAADLRGTSDPYV+V YG
Sbjct: 586 RSGEIRLKIEAIKVDDQEGSTGSG--SGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYG 643

Query: 541 DLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ 600
           + KKRTKVI+KTL PQW+QTLEFPDDGSPL L+V+DHNALL +SSIG+CVVEYQRLPPNQ
Sbjct: 644 NFKKRTKVIYKTLTPQWNQTLEFPDDGSPLMLYVKDHNALLPTSSIGECVVEYQRLPPNQ 703

Query: 601 MADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLI 660
           MADKWIPLQGV++GEIH+ ITRKVPE+ KR S+DS+ S ++ H+I  Q+KQMM+KF+S I
Sbjct: 704 MADKWIPLQGVKRGEIHIQITRKVPEMQKRQSMDSEPSLSKLHQIPTQIKQMMIKFRSQI 763

Query: 661 DDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIIN 709
           +D NLE LST LSELETLED+QE Y+ QLETEQMLLL+KIKELGQEIIN
Sbjct: 764 EDGNLEGLSTTLSELETLEDTQEGYVAQLETEQMLLLSKIKELGQEIIN 812

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815879|emb|CAN72583.1| hypothetical protein VITISV_035295 [Vitis vinifera]

 Score = 1027 bits (2656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/686 (73%), Positives = 584/686 (85%), Gaps = 24/686 (3%)

Query: 1   MEVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSG 60
           ME+WP Y+NPKLS+RFS IVE           EKIELQ FSLGS+ P LGLHGT+WS++G
Sbjct: 79  MEIWPNYLNPKLSLRFSSIVE-----------EKIELQGFSLGSSPPVLGLHGTQWSATG 127

Query: 61  DQRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSF 120
           DQ++M+LGFDWD  D+SI+LLAKLAKPLLGTA+IVINSLHIKGDLL+MPIL+G+A LYSF
Sbjct: 128 DQKIMRLGFDWDTTDLSIMLLAKLAKPLLGTARIVINSLHIKGDLLLMPILDGRAFLYSF 187

Query: 121 VSIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLR 180
           +S P+VRIGVAFGSGGSQSLPATELPGVS+WL +L  +TLV+T+VEPRRRCYSLPAVDLR
Sbjct: 188 ISPPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLFTDTLVRTMVEPRRRCYSLPAVDLR 247

Query: 181 KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL 240
           KKAVGG++YV VISASKLSRSSL+GSP RRQQ+ S D   EEH +DK L TFVE+EL EL
Sbjct: 248 KKAVGGVIYVTVISASKLSRSSLKGSPLRRQQSCSIDGISEEHLDDKYLQTFVEVELGEL 307

Query: 241 TRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS 300
           TRRTD R GS PRWDS+FNM+LHE+TGT+RF LYE  P +VKYDYL SCE+KMKYVADDS
Sbjct: 308 TRRTDVRVGSSPRWDSLFNMILHEDTGTLRFQLYESTPSNVKYDYLASCEIKMKYVADDS 367

Query: 301 TTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFH 360
           T FWAIG +S +IAKHAEFCG EVEM VPFEG NSGEL VRLV+KEWQF+DGSHS NNF 
Sbjct: 368 TAFWAIGSESSVIAKHAEFCGKEVEMVVPFEGANSGELMVRLVVKEWQFTDGSHSSNNFR 427

Query: 361 SGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H 419
              QQSL GSSNF S TGRKIN+TVVEGKDL+  +KSG+CDPYVKLQYGK+ QRTRT  H
Sbjct: 428 VSPQQSLYGSSNFASGTGRKINITVVEGKDLI-ANKSGRCDPYVKLQYGKVPQRTRTVPH 486

Query: 420 SPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEK 479
             +  WNQKFE DEIGGGE L +KC+NEE FGD+N+G+ARV+LEGLVEGS+RD+WVPLEK
Sbjct: 487 CSSPTWNQKFEFDEIGGGEYLKIKCFNEETFGDDNIGNARVSLEGLVEGSIRDVWVPLEK 546

Query: 480 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY 539
           VNTGELRL +E             N GSGNGW+ELV+VEARDL+AADLRGTSDPYV+VQY
Sbjct: 547 VNTGELRLLLEVV----------ANAGSGNGWVELVLVEARDLIAADLRGTSDPYVRVQY 596

Query: 540 GDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN 599
           G LKKRTKV+FKTLNPQW+QTLEFPDDGSPL LHV+DHNALL +SSIGDCVVEYQRLPPN
Sbjct: 597 GSLKKRTKVMFKTLNPQWNQTLEFPDDGSPLELHVKDHNALLPTSSIGDCVVEYQRLPPN 656

Query: 600 QMADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSS-TRAHKISGQMKQMMVKFQS 658
           QMADKWIPLQGV++GEIHV ITRK+PE+ +R S++S+ SS  +AH++S QMKQMM K ++
Sbjct: 657 QMADKWIPLQGVKRGEIHVQITRKIPEIQRRPSLESEPSSLIKAHZVSSQMKQMMNKLET 716

Query: 659 LIDDDNLEELSTALSELETLEDSQEE 684
            I+D NLE LS  +SELE+L+D+QEE
Sbjct: 717 QIEDGNLEGLSAVVSELESLQDTQEE 742

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522767|ref|XP_003530017.1| PREDICTED: uncharacterized protein LOC100789237 [Glycine max]

 Score = 1023 bits (2644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/718 (71%), Positives = 610/718 (84%), Gaps = 4/718 (0%)

Query: 2   EVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGD 61
           EVW  Y NPK SIR S IVEKRLK RKPRL+E++ELQEFSLGS  P L L G RWS+ GD
Sbjct: 107 EVWSNYFNPKFSIRISAIVEKRLKLRKPRLLERVELQEFSLGSCPPSLALQGMRWSTIGD 166

Query: 62  QRVMQLGFDWDANDISILLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFV 121
           QR +QLGFDWD N++SILLLAKLAKPL+GTA+IVINSLHIKGDLL  PIL+GKA+LYSFV
Sbjct: 167 QRFLQLGFDWDTNEMSILLLAKLAKPLIGTARIVINSLHIKGDLLASPILDGKALLYSFV 226

Query: 122 SIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRK 181
           S P+VRIGVAFGSGGSQSLPATE PGVS+WL +L  +TL KT+VEPRRRC++LPAVDLRK
Sbjct: 227 STPEVRIGVAFGSGGSQSLPATEWPGVSSWLEKLFTDTLAKTMVEPRRRCFTLPAVDLRK 286

Query: 182 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELT 241
           KAVGGI+Y+RVISA+KLSRS  + S  RRQ N +++   E++++DKDL TFVE+E+EELT
Sbjct: 287 KAVGGIIYIRVISANKLSRSCFKTS--RRQPNGTSNGCSEDNFDDKDLQTFVEVEIEELT 344

Query: 242 RRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDST 301
           RRTD R GS PRWD+ FNMVLH+  GT+RFNL+E  P +V+ DYL SCE+K+++V DDST
Sbjct: 345 RRTDVRLGSTPRWDAPFNMVLHDNAGTLRFNLHESSPNNVRCDYLASCEIKLRHVEDDST 404

Query: 302 TFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHS 361
             WAIGPDSG+IAK A+FCG+E+EM VPFEG NSGEL V +V+KEWQ+SDGSHSLN+  S
Sbjct: 405 IMWAIGPDSGVIAKQAQFCGEEIEMVVPFEGSNSGELKVSIVVKEWQYSDGSHSLNSLRS 464

Query: 362 GSQQSLSGSS-NFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHS 420
            S Q     S NF  RTGRKINVTVVEGKDL  KDKSGK DPY+KLQYGK+VQ+TRT H+
Sbjct: 465 SSSQQSINGSPNFQLRTGRKINVTVVEGKDLAAKDKSGKFDPYIKLQYGKVVQKTRTVHT 524

Query: 421 PNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV 480
           PN  WNQ FE DEIGGGE L +K ++EEIFGDEN+GSA VNLEGLVEGSVRD+W+PLE+V
Sbjct: 525 PNPAWNQTFEFDEIGGGEYLKIKGFSEEIFGDENIGSAHVNLEGLVEGSVRDVWIPLERV 584

Query: 481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG 540
            +GELRLQI + R DD EGSRG  +G GNGWIELV++E R LVAAD+RGTSDP+V+V YG
Sbjct: 585 RSGELRLQI-SIRADDQEGSRGSGLGLGNGWIELVLIEGRGLVAADVRGTSDPFVRVHYG 643

Query: 541 DLKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ 600
           + KK+TKVI+KTLNPQW+QTLEFPDDGS L L+V+DHNALL +SSIG+CVVEYQRLPPNQ
Sbjct: 644 NFKKKTKVIYKTLNPQWNQTLEFPDDGSQLMLYVKDHNALLPTSSIGECVVEYQRLPPNQ 703

Query: 601 MADKWIPLQGVRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLI 660
            ADKWIPLQGV++GEIH+ ITRKVPE+ KR S+DS+ S ++ H+I  Q+KQMM+KF+S I
Sbjct: 704 TADKWIPLQGVKRGEIHIQITRKVPEMQKRQSLDSEPSLSKLHQIPNQIKQMMIKFRSFI 763

Query: 661 DDDNLEELSTALSELETLEDSQEEYMVQLETEQMLLLNKIKELGQEIINSSPSINRRS 718
           +D NLE LS  LSELETLED+QE Y+VQLETEQMLLL+KIKELGQEIINSSPS++RRS
Sbjct: 764 EDGNLEGLSATLSELETLEDTQEGYIVQLETEQMLLLSKIKELGQEIINSSPSLSRRS 821

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	726
TAIR|locus:2095062	815	ATSYTF "AT3G18370" [Arabidopsi	0.957	0.852	0.568	2e-214
TAIR|locus:2184931	569	SYTD "AT5G11100" [Arabidopsis	0.137	0.175	0.377	5.6e-23
TAIR|locus:2089601	737	NTMC2T6.2 [Arabidopsis thalian	0.144	0.142	0.372	5.7e-19
TAIR|locus:2024912	751	NTMC2T6.1 [Arabidopsis thalian	0.144	0.139	0.354	1.5e-16
RGD|1305199	946	Mctp1 "multiple C2 domains, tr	0.202	0.155	0.312	1.6e-16
ZFIN|ZDB-GENE-050506-136	665	mctp2b "multiple C2 domains, t	0.112	0.123	0.333	9.7e-16
UNIPROTKB|Q6DN14	999	MCTP1 "Multiple C2 and transme	0.148	0.108	0.350	1.3e-14
UNIPROTKB|F1NF56	657	RASA4 "Uncharacterized protein	0.304	0.336	0.278	4.4e-13
UNIPROTKB|E1BPM0	802	RASAL1 "Uncharacterized protei	0.286	0.259	0.300	4.6e-12
UNIPROTKB|Q5Z6I4	1037	OSJNBa0055N24.36 "Putative Osn	0.151	0.106	0.313	6.2e-12

TAIR|locus:2095062 ATSYTF "AT3G18370" [Arabidopsis thaliana (taxid:3702)]

 Score = 2072 (734.4 bits), Expect = 2.0e-214, P = 2.0e-214
 Identities = 401/705 (56%), Positives = 504/705 (71%)

Query:     2 EVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGD 61
             E+W  Y+N KLS+RFS +VEKRL+ R+ RLIE I+L EFSLGS  P LGLHGT WS SG+
Sbjct:   107 EIWLNYMNKKLSLRFSSMVEKRLRQRRSRLIENIQLLEFSLGSCPPLLGLHGTCWSKSGE 166

Query:    62 QRVMQLGFDWDANDISIXXXXXXXXXXXXXXXIVINSLHIKGDLLVMPILEGKAVLYSFV 121
             Q++M+L F+WD  D+SI               IV+NSL IKGD+L+ PILEG+A+LYSFV
Sbjct:   167 QKIMRLDFNWDTTDLSILLQAKLSMPFNRTARIVVNSLCIKGDILIRPILEGRALLYSFV 226

Query:   122 SIPDVRIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLRK 181
             S P+VRIGVAFG GG QSLPATELPGVS+WL +++ ETL K +VEPRR C+SLPA DL K
Sbjct:   227 SNPEVRIGVAFGGGGGQSLPATELPGVSSWLVKILTETLNKKMVEPRRGCFSLPATDLHK 286

Query:   182 KAVGGIVYVXXXXXXXXXXXXXXXXXXXXQQNYSADSSLEEHYEDKDLTTFVEIELEELT 241
              A+GGI+YV                     +     S    +   K + TFVE+ELE+L+
Sbjct:   287 TAIGGIIYVTVVSGNNLNRRILRGSPSKSSEIGEGSSG---NSSSKPVQTFVEVELEQLS 343

Query:   242 RRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDST 301
             RRT+ + G +P + S FNM+LH+ TGT++FNLYE  PG V+YD L SCEVKMKYV DDST
Sbjct:   344 RRTEMKSGPNPAYQSTFNMILHDNTGTLKFNLYENNPGSVRYDSLASCEVKMKYVGDDST 403

Query:   302 TFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHX 361
              FWA+G D+G+IAKHAEFCG E+EM VPFEGV+SGELTVRL+LKEW FSDGSHSLN+ + 
Sbjct:   404 MFWAVGSDNGVIAKHAEFCGQEIEMVVPFEGVSSGELTVRLLLKEWHFSDGSHSLNSVNS 463

Query:   362 XXXXXXXXXXNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP 421
                         +S+TGRKI VTV+ GK+L+ KDKSGKCD  VKLQYGKI+Q+T+  ++ 
Sbjct:   464 SSLHSLDSSSALLSKTGRKIIVTVLAGKNLVSKDKSGKCDASVKLQYGKIIQKTKIVNAA 523

Query:   422 NHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN 481
               VWNQKFE +E+ G E L VKCY EE+ G +N+G+A ++L+G +  S   IWVPLE VN
Sbjct:   524 ECVWNQKFEFEELAGEEYLKVKCYREEMLGTDNIGTATLSLQG-INNSEMHIWVPLEDVN 582

Query:   482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD 541
             +GE+ L IEA    D E S      S  G IELV+VEARDLVAAD+RGTSDPYV+VQYG+
Sbjct:   583 SGEIELLIEAL---DPEYSEAD---SSKGLIELVLVEARDLVAADIRGTSDPYVRVQYGE 636

Query:   542 LKKRTKVIFKTLNPQWHQTLEFPDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQM 601
              K+RTKVI+KTL P+W+QT+EFPDDGS L LHV+D+N LL +SSIG+CVVEYQ L PN+ 
Sbjct:   637 KKQRTKVIYKTLQPKWNQTMEFPDDGSSLELHVKDYNTLLPTSSIGNCVVEYQGLKPNET 696

Query:   602 ADKWIPLQGVRKGEIHVLITRKVPELDKXXXXXXXXXXXXAHKISGQMKQMMVKFQSLID 661
             ADKWI LQGV+ GE+HV +TRKV E+ +            A  +S QMKQ+M+KFQ+LID
Sbjct:   697 ADKWIILQGVKHGEVHVRVTRKVTEIQRRASAGPGTPFNKALLLSNQMKQVMIKFQNLID 756

Query:   662 DDNXXXXXXXXXXXXXXXDSQEEYMVQLETEQMLLLNKIKELGQE 706
             D +               D QE+Y++QL+TEQ LL+NKIK+LG+E
Sbjct:   757 DGDLEGLAEALEELESLEDEQEQYLLQLQTEQSLLINKIKDLGKE 801

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 5.6e-23, Sum P(3) = 5.6e-23
 Identities = 40/106 (37%), Positives = 61/106 (57%)

Query:   380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRT----AHSPNHVWNQKFE-LDEI 434
             K++V VV+ KDL  KD  GK DPY  +    +  RT+     ++S N +WN+ FE + E 
Sbjct:   265 KLDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVED 324

Query:   435 GGGECLMVKCYNEEIFGDENM-GSARVNLEGLVEGSVRDIWVPLEK 479
                + L V+ +++E  G   + G+A+V L  LV G V+DIW+ L K
Sbjct:   325 VSTQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGKVKDIWLKLVK 370

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

TAIR|locus:2089601 NTMC2T6.2 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.7e-19, Sum P(2) = 5.7e-19
 Identities = 41/110 (37%), Positives = 64/110 (58%)

Query:   516 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP----DDGSPLT 571
             +VEA D+  +DL G +DPYVK Q G  + +TK+++KTL P+W +  + P    D  + L 
Sbjct:   289 VVEACDVKPSDLNGLADPYVKGQLGAYRFKTKILWKTLAPKWQEEFKIPICTWDSANILN 348

Query:   572 LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 621
             + V+D +   +  S+GDC V        Q  D W+PLQ ++ G +H+ IT
Sbjct:   349 IEVQDKDRF-SDDSLGDCSVNIAEFRGGQRNDMWLPLQNIKMGRLHLAIT 397

GO:0005576 "extracellular region" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2024912 NTMC2T6.1 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
 Identities = 39/110 (35%), Positives = 62/110 (56%)

Query:   516 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP----DDGSPLT 571
             + EA DL  +DL G +DPYVK + G  + +TK+  KTL+P+WH+  + P    D  S L 
Sbjct:   288 VFEASDLKPSDLNGLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSILN 347

Query:   572 LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 621
             + V D +  +   ++G+C V  +     Q  D W+ LQ ++ G +H+ IT
Sbjct:   348 IEVGDKDRFV-DDTLGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAIT 396

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

RGD|1305199 Mctp1 "multiple C2 domains, transmembrane 1" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 49/157 (31%), Positives = 80/157 (50%)

Query:   467 EGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD 526
             EG  RD+ + + K      + Q ++ R+ D    R  ++    G + + ++E RDL A D
Sbjct:   378 EGEPRDVTMLMRKSWKRSSKFQTQSLRLSDQH--RKSHLW--RGIVSITLIEGRDLKAMD 433

Query:   527 LRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF---PDDGSPLTLHVRDHNALLAS 583
               G SDPYVK + G  K ++K++ KTLNPQW +  +F    + G  + +   D +A    
Sbjct:   434 SNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGVMDITAWDKDAGKRD 493

Query:   584 SSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLI 620
               IG C V+   L   Q   K + LQ + +GE H+++
Sbjct:   494 DFIGRCQVDLSSLSREQ-THK-LELQ-LEEGEGHLVL 527

GO:0005509 "calcium ion binding" evidence=ISO

GO:0016021 "integral to membrane" evidence=ISO

GO:0005544 "calcium-dependent phospholipid binding" evidence=ISO

ZFIN|ZDB-GENE-050506-136 mctp2b "multiple C2 domains, transmembrane 2b" [Danio rerio (taxid:7955)]

 Score = 145 (56.1 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
 Identities = 28/84 (33%), Positives = 51/84 (60%)

Query:   510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP--DDG 567
             G++++ +++A DL++ADL G SDP+  ++ G+ + +T  I+KTLNP+W++   FP  D  
Sbjct:   299 GFLQVKVIKATDLISADLNGKSDPFCVLELGNSRLQTHTIYKTLNPEWNKVFTFPVKDIH 358

Query:   568 SPLTLHVRDHNALLASSSIGDCVV 591
               L + V D +   A   +G   +
Sbjct:   359 EVLEVTVFDEDGDKAPDFLGKVAI 382

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q6DN14 MCTP1 "Multiple C2 and transmembrane domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 40/114 (35%), Positives = 62/114 (54%)

Query:   510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF---PDD 566
             G + + ++E RDL A D  G SDPYVK + G  K ++K++ KTLNPQW +  +F    + 
Sbjct:   470 GIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEER 529

Query:   567 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLI 620
             G  + +   D +A      IG C V+   L   Q   K + LQ + +GE H+++
Sbjct:   530 GGVIDITAWDKDAGKRDDFIGRCQVDLSALSREQ-THK-LELQ-LEEGEGHLVL 580

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IDA

GO:0019722 "calcium-mediated signaling" evidence=NAS

GO:0016021 "integral to membrane" evidence=IDA

UNIPROTKB|F1NF56 RASA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 206 (77.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 66/237 (27%), Positives = 109/237 (45%)

Query:   381 INVTVVEGKDLMPKDKSGKCDPY--VKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 438
             +++ +VEG++L  KD +G  DPY  VK+    IV+      + +  W +++E+       
Sbjct:     8 LSIRIVEGRNLPAKDITGSSDPYCIVKIDNEAIVRTATVWKTLSPFWGEEYEVQLHPTFH 67

Query:   439 CLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVR-DIWVPLEKVNTGELRLQIEA-TRVD 495
              + +   +E+    D+ +G   +    L E       WV L +V+  E  +Q E   RV+
Sbjct:    68 SISIYVMDEDALSRDDVIGKVCITRTMLAEHPKGYSGWVSLSEVDPDE-EVQGEIHLRVE 126

Query:   496 DNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNP 555
               EG  GQ +          ++EARDL   D  G SDP+V V Y    + + V+ K+  P
Sbjct:   127 LLEGEGGQRL-------RCTVLEARDLAKKDRNGASDPFVCVSYNGKTQESTVVKKSCYP 179

Query:   556 QWHQTLEF--PDD-GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
             +W++  EF  PD     L + V D + +  +  +G  VV  Q L      + W  LQ
Sbjct:   180 RWNEAFEFELPDPPAEKLCVEVWDWDLVSKNDFLGKVVVSVQGLQAAGHQEGWFRLQ 236

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E1BPM0 RASAL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 198 (74.8 bits), Expect = 4.6e-12, P = 4.6e-12
 Identities = 70/233 (30%), Positives = 112/233 (48%)

Query:   381 INVTVVEGKDLMPKDKSGKCDPY--VKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGG 437
             +NV VVEG+ L  KD SG  DPY  VK+   ++V RT T   S +  W +++ +      
Sbjct:     7 LNVRVVEGRALPAKDVSGSSDPYCIVKVD-DEVVARTATIWRSLSPFWGEEYTVHLPLDF 65

Query:   438 ECLMVKCYNEEIFG-DENMGSARVNLEGLV-EGSVRDIWVPLEKVNT-GELRLQIEATRV 494
               L     +E+  G D+ +G   ++ E +  +    D W+ L +V+   E++ +I    V
Sbjct:    66 HHLSFYVLDEDTVGQDDIIGKISLSREAITADPRGIDSWINLSRVDPDSEVQGEI-CLSV 124

Query:   495 DDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLN 554
                E  RG+        +   +++ARDL   D+ GTSDP+ +V +G     T  I KT  
Sbjct:   125 QTLEDVRGR-------CLHCHVLQARDLAPRDISGTSDPFARVFWGSQSLETSTIKKTRF 177

Query:   555 PQWHQTLEF---PDDGSPLTLHVRDHNALLASSSIGDCVVEY-----QRLPPN 599
             P W + LE    P   SPL + + D + +  +  +G  +VE+     Q  PPN
Sbjct:   178 PHWDEVLELREMPGSPSPLRVELWDWDMVGKNDFLG--MVEFPPQVLQHNPPN 228

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|Q5Z6I4 OSJNBa0055N24.36 "Putative Osnop" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 148 (57.2 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
 Identities = 37/118 (31%), Positives = 60/118 (50%)

Query:   501 RGQNIG---SGNGWIELV-IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQ 556
             RG + G    GNGW+  V +++  +L A    G SDPYV        K + + F TL P+
Sbjct:   543 RGSDHGVKAQGNGWLLTVALIDGTNLAATKSSGYSDPYVVFTCNGKTKTSSIKFHTLEPR 602

Query:   557 WHQTLEFP---DDGSPLTLHVRDHNALLAS-SSIGDCVVEYQRLPPNQMADKWIPLQG 610
             W++  EF    D  S + ++V D +       S+G   V + +   ++++D WIPL+G
Sbjct:   603 WNEIFEFDAMEDPPSVMKINVYDFDGPFDEVESLGHAEVNFLKSNLSELSDIWIPLKG 660

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	726
cd00030	102	cd00030, C2, C2 domain	2e-22
pfam00168	85	pfam00168, C2, C2 domain	5e-19
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-17
cd00030	102	cd00030, C2, C2 domain	9e-17
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	6e-16
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-15
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	3e-15
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	5e-15
pfam00168	85	pfam00168, C2, C2 domain	6e-15
smart00239	101	smart00239, C2, Protein kinase C conserved region	3e-14
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	2e-12
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	2e-12
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	7e-12
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	9e-12
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	1e-11
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-11
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	2e-11
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	2e-11
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	3e-11
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	4e-11
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	5e-11
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	6e-11
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	2e-10
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	3e-10
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	4e-10
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	5e-10
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	1e-09
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	1e-09
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-09
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	2e-09
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	3e-09
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	1e-08
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	1e-08
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	1e-08
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	2e-08
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-08
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-08
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	3e-08
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-08
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	3e-08
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	3e-08
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	6e-08
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	6e-08
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	1e-07
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	1e-07
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	2e-07
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	2e-07
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	2e-07
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-07
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	2e-07
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	4e-07
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	4e-07
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	6e-07
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	6e-07
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	9e-07
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	9e-07
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	1e-06
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-06
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	2e-06
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-06
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	2e-06
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	3e-06
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	4e-06
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	4e-06
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	5e-06
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	1e-05
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	1e-05
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	2e-05
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	2e-05
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-05
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	2e-05
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	3e-05
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	3e-05
cd04028	146	cd04028, C2B_RIM1alpha, C2 domain second repeat co	3e-05
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	5e-05
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	6e-05
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	7e-05
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	9e-05
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	1e-04
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	1e-04
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	2e-04
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	2e-04
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	3e-04
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	3e-04
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	4e-04
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	4e-04
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	4e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	5e-04
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	5e-04
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	5e-04
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	8e-04
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	0.001
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	0.001
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	0.001
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	0.001
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	0.002
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	0.002
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	0.002
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	0.003
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	0.004
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	0.004

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 92.1 bits (229), Expect = 2e-22
 Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 5/102 (4%)

Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKK-RTKVIFKTLNPQWHQTLEFP---DDG 567
           + + ++EAR+L A DL G SDPYVKV  G  +K +TKV+  TLNP W++T EFP    + 
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 568 SPLTLHVRDHNALLASSSIGDCVVEYQRL-PPNQMADKWIPL 608
             LT+ V D +       +G+  +    L    +  + W+PL
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 81.5 bits (202), Expect = 5e-19
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQYGDLK---KRTKVIFKTLNPQWHQTLEF---PD 565
           + + ++ A++L   DL G SDPYVKV  G  K   K+TKV+  TLNP W++T  F     
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 566 DGSPLTLHVRDHNALLASSSIGDCV 590
           + + L + V D++       IG+  
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQYGDL---KKRTKVIFKTLNPQWHQTLEF---PD 565
           + + I+ AR+L   D  G SDPYVKV        KK+TKV+  TLNP W++T EF   P 
Sbjct: 2   LTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPP 61

Query: 566 DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKW 605
           + + L + V D +       IG   +    L      +K 
Sbjct: 62  ELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 76.0 bits (187), Expect = 9e-17
 Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 5/102 (4%)

Query: 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTAH-SPNHVWNQKFELD-EIGGG 437
           + VTV+E ++L  KD +GK DPYVK+  G K   +T+    + N VWN+ FE        
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 438 ECLMVKCYNEEIFG-DENMGSARVNLEGLV-EGSVRDIWVPL 477
           + L V+ ++++ F  D+ +G   + L  L+  G   ++W+PL
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 74.2 bits (183), Expect = 6e-16
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 4/110 (3%)

Query: 515 VIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLE---FPDDGSPLT 571
           V+VE ++L   D  G SDPYVK + G+ K ++KV  KTLNPQW +  +   F D    L 
Sbjct: 5   VLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILE 64

Query: 572 LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 621
           + V D +       IG C ++   LP  Q     + L+    G + +L+T
Sbjct: 65  IEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGE-GSLLLLLT 113

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 73.6 bits (181), Expect = 1e-15
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 15/124 (12%)

Query: 510 GWIELVIVEARDLVAADLR--GTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDG 567
           G + + +VEA+DL A D    G SDPY  +  G  + +T+ I  TLNP+W+   EFP   
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFS 60

Query: 568 SP---LTLHVRDHNALLASSSIGDCVVEYQRL---PPNQMADKWIPLQGVRK-------G 614
           +    L L + D +       +G+  +  + +        +DKWI L+  R        G
Sbjct: 61  AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSG 120

Query: 615 EIHV 618
           EIH+
Sbjct: 121 EIHL 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 18/121 (14%)

Query: 510 GWIELVIVEARDLVAAD------LRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF 563
           G + + ++EA+DLVA D      ++G SDPYV V+ G    ++KVI + LNP+W++  E 
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60

Query: 564 ---PDDGSPLTLHV----RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEI 616
                 G  L + +     D +  L   SI    VE +        D+W+PL+ V+ G +
Sbjct: 61  VVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGF-----IDEWLPLEDVKSGRL 115

Query: 617 H 617
           H
Sbjct: 116 H 116

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 71.6 bits (176), Expect = 5e-15
 Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 10/117 (8%)

Query: 383 VTVVEGKDLMPKDKS------GKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFE--LDE 433
           + V+E +DL+ KDK       GK DPYV ++ G    +++      N  WN+ +E  +DE
Sbjct: 5   IHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDE 64

Query: 434 IGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 490
           + G E L ++ ++E+   D+ +G   ++L  + +    D W+PLE V +G L L++E
Sbjct: 65  VPGQE-LEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLE 120

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 70.4 bits (173), Expect = 6e-15
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTAH-SPNHVWNQKFELDEI-G 435
           + VTV+  K+L PKD +GK DPYVK+  G   K  ++T+    + N VWN+ F  +    
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 436 GGECLMVKCYNEEIFG-DENMGSAR 459
               L ++ Y+ + FG D+ +G   
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 68.7 bits (168), Expect = 3e-14
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEI- 434
            + V ++  ++L PKDK GK DPYVK+      K  ++T+   ++ N VWN+ FE +   
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 435 GGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW 474
                L ++ Y+++ FG D+ +G   + L  L+ G   +  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 39/126 (30%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFELD----EI 434
           K+ V VV+ +DLMPKD  G    YV+L +    +RTRT     N VWN+K   +      
Sbjct: 1   KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSR 60

Query: 435 GGGECLMVKCYNEEIFGDEN--MGSARVNLEGLV-EGSVRDIWVPLEK-----VNTGELR 486
                L V  YN+   G     +G  R++    V          PLEK        GE+ 
Sbjct: 61  LSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIG 120

Query: 487 LQIEAT 492
           L++  T
Sbjct: 121 LKVYIT 126

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF----PDDGSPLT 571
           +V+A+DL+  D +G+S  YV++ +   KKRT+   K LNP W++ L F    P   S L 
Sbjct: 6   VVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLV 65

Query: 572 LHVRDHN 578
           L V  +N
Sbjct: 66  LEVYVYN 72

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 62.2 bits (152), Expect = 7e-12
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFP---DDGSPLT 571
           ++ A +L +AD  G SDP+VK      K  +TK I KTLNP W+++ E P      + L 
Sbjct: 5   VISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLK 64

Query: 572 LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL---QGVRKGEIHV 618
           + V D +       +G   ++   L P +  +  +PL    G + G + +
Sbjct: 65  VEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVFL 114

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 62.3 bits (152), Expect = 9e-12
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 9/113 (7%)

Query: 518 EARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFP-DDGS-PLTLHV 574
           E R+L A D  GTSDPYVK +YG     ++K I+K LNP W +    P +D + PL + V
Sbjct: 8   EGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKV 67

Query: 575 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL------QGVRKGEIHVLIT 621
            D++  L    +G   V+   L  N+  +  + L      + +    + V +T
Sbjct: 68  FDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 20/55 (36%), Positives = 37/55 (67%)

Query: 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP 564
           G++++ ++ A  L AAD+ G SDP+  ++  + + +T  I+KTLNP+W++   FP
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFP 55

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 10/89 (11%)

Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKV--QYGD--LKKRTKVIFK-TLNPQWHQTLEF 563
              I + I++AR+L A D+ GTSDPYVKV   Y D  ++K+  VI K TLNP ++++  F
Sbjct: 14  ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIF 73

Query: 564 --PDD---GSPLTLHVRDHNALLASSSIG 587
             P +    + L + V D + L  +  IG
Sbjct: 74  NIPLERLRETTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 15/123 (12%)

Query: 381 INVTVVEGKDLMPKD--KSGKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFELD-EIGG 436
           + V VVE KDL  KD    GK DPY  L  G    +T+T  +  N  WN   E       
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62

Query: 437 GECLMVKCYNE-EIFGDENMGSARVNLEGLV---EGSVRDIWVPLEKVNT-------GEL 485
            + L +  +++    G + +G   + LE +    +    D W+ L+           GE+
Sbjct: 63  NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEI 122

Query: 486 RLQ 488
            LQ
Sbjct: 123 HLQ 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 5/106 (4%)

Query: 383 VTVVEGKDLMPKDKSGKCDPYVKLQY-GKIVQRTRTAHSP-NHVWNQKFELDEIGGGEC- 439
           + + EG++L  +D+ G  DPYVK +Y GK V +++T +   N VW++KF L  I      
Sbjct: 4   IHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTL-PIEDVTQP 62

Query: 440 LMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 484
           L +K ++ +    D+ MGSA V+L  L      ++ + LE  N+ E
Sbjct: 63  LYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDE 108

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 30/64 (46%), Positives = 38/64 (59%)

Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLT 571
           I + +V A+ L+A D  GTSDPYV VQ G  KKRTK I + LNP W++   F    S   
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 572 LHVR 575
           + VR
Sbjct: 63  IKVR 66

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 60.6 bits (147), Expect = 4e-11
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDG---SPLTL 572
           ++EARDL   D  GTSDP+V+V Y      T V+ K+  P+W++  EF       SPL++
Sbjct: 6   VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSV 65

Query: 573 HVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
            V D + +  +  +G  V   Q L   +  + W  L 
Sbjct: 66  EVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLL 102

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 60.6 bits (148), Expect = 5e-11
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 23/117 (19%)

Query: 519 ARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD---DGSP------ 569
           ARDL+AAD  G SDP+ +V + +  + T+VI +TL+P W QTL F +    GSP      
Sbjct: 10  ARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQN 69

Query: 570 ---LTLHVRDHNALLASSSIGDCVVEY------QRLPPNQMADKWIPLQGVRKGEIH 617
              + + + D +++     +G  V +       +   P ++  +W P   + KG   
Sbjct: 70  PPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKL--QWFP---IYKGGQS 121

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF--PDDG 567
           G +++ +V   +L   D   +SDPYV +  G+ K +T+VI K LNP W++ L    P+  
Sbjct: 2   GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPM 60

Query: 568 SPLTLHVRDHNALLASSSIGDCVVEYQRL 596
           +PL L V D +      S+G+  ++ + L
Sbjct: 61  APLKLEVFDKDTFSKDDSMGEAEIDLEPL 89

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 515 VIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP-----DDGSP 569
           ++V  ++L    L+G  D   KV +  +KK+T+V+   LNP W++T E+P     D    
Sbjct: 1   LVVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDES 58

Query: 570 LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608
           L + V+D+  +  +  IG   V  Q L    + +   PL
Sbjct: 59  LEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPL 97

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 20/128 (15%)

Query: 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP-NHVWNQKFELDEIGGGE 438
           KI++TVV  + L+ KDK+G  DPYV +Q GK  +RT+T     N VWN+KF  +     +
Sbjct: 2   KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSD 61

Query: 439 CLMVKCYNEEI------------FGDENMGSARVNLEGLVEGSVRDIWVPLEKVN----- 481
            + V+ ++E+               D+ +G   + +  L  G + D+W  LEK       
Sbjct: 62  RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL-SGEM-DVWYNLEKRTDKSAV 119

Query: 482 TGELRLQI 489
           +G +RL I
Sbjct: 120 SGAIRLHI 127

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 17/111 (15%)

Query: 483 GELRLQIEATR-VDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVK--VQY 539
           GEL++   A + V        ++     G + + + EA++L A    GTSD +VK  +  
Sbjct: 2   GELKV---ALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLP 58

Query: 540 GD---LKKRTKVIFKTLNPQWHQTLEFPDDGSP-------LTLHVRDHNAL 580
                 K++T V+ K++NP W+ T  + D  SP       L L V DH+ L
Sbjct: 59  DKSKKSKQKTPVVKKSVNPVWNHTFVY-DGVSPEDLSQACLELTVWDHDKL 108

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 23/134 (17%)

Query: 501 RGQ---NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKT 552
           RG+    I   +  + + + EA++L+  D  G SDPYVK++         K++TK I KT
Sbjct: 1   RGRIYLKISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKT 60

Query: 553 LNPQWHQTLEFP----DDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMAD 603
           LNP W++T  F     D    L++ V D      N  + S S G  V E  ++P     D
Sbjct: 61  LNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFG--VSELIKMP----VD 114

Query: 604 KWIPLQGVRKGEIH 617
            W  L    +GE +
Sbjct: 115 GWYKLLNQEEGEYY 128

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDL--------KKRTKVIFKTLNPQWHQTLEF---- 563
           I+ A+ L A D  G SDPYVK+    L        K RTK + KT NP++++TL +    
Sbjct: 21  IIRAKGLKAMDANGLSDPYVKLN---LLPGASKATKLRTKTVHKTRNPEFNETLTYYGIT 77

Query: 564 PDDGSPLTLH--VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608
            +D    TL   V D +    +  +G+  +  ++L PNQ     I L
Sbjct: 78  EEDIQRKTLRLLVLDED-RFGNDFLGETRIPLKKLKPNQTKQFNICL 123

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 10/85 (11%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQY--GDLKKR--TKVIFKTLNPQWHQTLEF---PDDGS 568
           I++A DL A D+ GTSDPYVKV Y   D KK+  TKV  KTLNP +++T  F     +  
Sbjct: 22  IIQAADLPAMDMGGTSDPYVKV-YLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELG 80

Query: 569 PLTLH--VRDHNALLASSSIGDCVV 591
             TL   V D +       IG+  V
Sbjct: 81  NKTLVFSVYDFDRFSKHDLIGEVRV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 7/113 (6%)

Query: 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFEL---DEIGG 436
           + + +VEGK+L P D +G  DPYVK + G    +++    + N  W ++F+L   D+   
Sbjct: 2   VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQ 61

Query: 437 GECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQ 488
              L ++ ++++    DE +G   ++L  L       + + LE      L L 
Sbjct: 62  --ILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSLLLLL 112

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 26/57 (45%), Positives = 38/57 (66%)

Query: 507 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF 563
           SG G + +VIVE RDL   +  G SDPY +V  G  + +TKV+  TLNP+W+ +++F
Sbjct: 12  SGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQF 68

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 13/86 (15%)

Query: 514 LVIVEARDLVAADLRGTSDPYVKVQYGDLKK---RTKVIFKTLNPQWHQTLEFPDDGSP- 569
           L I++A +L A D  GTSDP+VK+     KK    TKV  K LNP W++T  F  +G P 
Sbjct: 20  LKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF--EGFPY 77

Query: 570 -------LTLHVRDHNALLASSSIGD 588
                  L L V D++    +  IG+
Sbjct: 78  EKLQQRVLYLQVLDYDRFSRNDPIGE 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKV---QYGDL--KKRTKVIFKTLNPQWHQTLEF 563
            G + +VI+EA++L   D+ G SDPYVK+   Q G    KK+T +  +TLNP ++++  F
Sbjct: 14  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSF 73

Query: 564 ---PDDGSPLTLH--VRDHNALLASSSIGDCVV 591
               +    + L   V D++ +  +  IG  V+
Sbjct: 74  EVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 516 IVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEFP----DD 566
           +++ARDL   D     +PYVKV     +    K+RTK + KTLNP+W+QT E+     + 
Sbjct: 22  VLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81

Query: 567 --GSPLTLHVRDHNALLASSSIGDCVVEYQ 594
                L + V D++    +  +G+ V++  
Sbjct: 82  LKERTLEVTVWDYDRDGENDFLGEVVIDLA 111

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 16/108 (14%)

Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSP-- 569
           + + ++EAR LV     G  DP VKV+ G  KK T V   T  P +++   F    SP  
Sbjct: 6   VRVRVIEARQLVG----GNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDE 61

Query: 570 -----LTLHVRDHNALLASSSIG----DCVVEYQRLPPNQMADKWIPL 608
                + + V D  +L + + IG    D    Y   P +    KW+ L
Sbjct: 62  LFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYD-QPDHAFLRKWLLL 108

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 7/78 (8%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEF----PDDGSP 569
           +V AR+L   D  G SDPY+K++ G   +  R   I  TLNP + +  E     P + S 
Sbjct: 6   VVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGN-SI 64

Query: 570 LTLHVRDHNALLASSSIG 587
           L + V D++ L +   IG
Sbjct: 65  LKISVMDYDLLGSDDLIG 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 14/96 (14%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQ------YGDLKK-RTKVIFKTLNPQWHQTLEFP---- 564
           I+ AR+L+  D  G+SDP+VKV+      + D+   +T+V  KTL P + ++ EF     
Sbjct: 22  ILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81

Query: 565 ---DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP 597
               +G+ L   V+D++ L ++   G+  +    +P
Sbjct: 82  QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP 117

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 514 LVIVEARDLVAADLRGTSDPYVKVQ--YGDL---KKRTKVIFKTLNPQWHQTLEF--PDD 566
           +V+++AR+L  +D +G SDPYVKV    G     KK+T V   TLNP +++   F  P +
Sbjct: 18  VVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE 77

Query: 567 GSP---LTLHVRDHNALLASSSIGDCVV 591
                 L + V D +++  +  IG  V+
Sbjct: 78  QLEEVSLVITVVDKDSVGRNEVIGQVVL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 5/88 (5%)

Query: 381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH---VWNQKFELD-EIGG 436
           + V VV  ++L PKD +GK DPY+K++ GK     R  + PN    V+ + FEL+  + G
Sbjct: 2   VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG 61

Query: 437 GECLMVKCYN-EEIFGDENMGSARVNLE 463
              L +   + + +  D+ +G   ++LE
Sbjct: 62  NSILKISVMDYDLLGSDDLIGETVIDLE 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 509  NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFP--- 564
            +G++ +++    +L ++D  G SDP+VK+   +    +TKV+ KTLNP W++        
Sbjct: 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLN 1098

Query: 565  DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKV 624
                 LT++V D ++   +  +G   ++  +L P    +  IPL G  K  I +  T   
Sbjct: 1099 RVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDG--KTFIVLDGT-LH 1155

Query: 625  PELDKRTSIDSDSSSTRAHKIS 646
            P  + R S  + + S +   + 
Sbjct: 1156 PGFNFR-SKYALNVSRKEGILG 1176

Length = 1227

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 11/115 (9%)

Query: 516 IVEARDLVAADLRGTSDPY--VKVQYGDLKKRTKVIFKTLNPQWHQ--TLEFPDDGSPLT 571
           IVE ++L A D+ G+SDPY  VKV   ++  RT  ++KTLNP W +  T+  P     ++
Sbjct: 6   IVEGKNLPAKDITGSSDPYCIVKVD-NEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVS 64

Query: 572 LHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPLQGVR-----KGEIHVLI 620
            +V D + L     IG   +  + +  + +  D W+ L  V      +GEIH+ +
Sbjct: 65  FYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLEL 119

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 514 LVIV-EARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEFP 564
           +V V + R+L   D     DPYV++     +    +++T V    LNP + +T EFP
Sbjct: 19  IVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP 75

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 382 NVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQKF 429
            VTV+E +DL+P DK+   + +VK Q G  V RTR +   + N  WN++ 
Sbjct: 3   RVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEEL 52

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 512 IELVIVEARDLV---AADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP--DD 566
           +E+ I+ A+ L    A D RG++D Y   +YG    RT+ +  + NP+W++   +P  D 
Sbjct: 2   LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP 61

Query: 567 GSPLTLHVRDHNALLASSSIGDCV-VEYQRLPPNQMADKWI-----PL-----QGVRK-G 614
            + LT+ V D++      ++   V +   R+  + + D  +     PL      GV+K G
Sbjct: 62  CTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMG 121

Query: 615 EIHV 618
           E+  
Sbjct: 122 ELEC 125

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 25/132 (18%)

Query: 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG------KIVQRTRTAHSPNHVWNQKFELDE 433
           ++   V+E +DL PKD++G  DP+V++ Y        +V+++         WN+ FE + 
Sbjct: 1   RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPR-----WNEVFEFEL 55

Query: 434 IGGG-ECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN--TGELRLQIE 490
           + G    L V+ ++ ++         + +  G V  S++     L++     G  RL  +
Sbjct: 56  MEGADSPLSVEVWDWDLVS-------KNDFLGKVVFSIQ----TLQQAKQEEGWFRLLPD 104

Query: 491 ATRVDDNEGSRG 502
               +++ G+ G
Sbjct: 105 PRAEEESGGNLG 116

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 12/104 (11%)

Query: 516 IVEARDLVAAD-LRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQ---TLEFPDD---GS 568
           +V ARDL   D     +D +V+V++G    +T V+ K+LNP W+      E  D+     
Sbjct: 5   VVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDE 64

Query: 569 PLTLHVRDHNALLASSSIG----DCVVEYQRLPPNQMADKWIPL 608
           PL + V DH+   A+ +IG    D      +   +Q++  W P+
Sbjct: 65  PLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISG-WFPI 107

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 10/108 (9%)

Query: 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAH-SPNHVWNQKFEL-- 431
            ++ T++  K L   D +G  DPYVKL            RT+T H + N  +N+      
Sbjct: 16  ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG 75

Query: 432 --DEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPL 477
             +E    + L +   +E+ FG++ +G  R+ L+ L     +   + L
Sbjct: 76  ITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 524 AADLRG----TSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD----DGSPLTLHVR 575
           A  L G    ++D YVKV +G  +KRT+VI+   NP+W+ T +F       G  L   V 
Sbjct: 37  ATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVW 96

Query: 576 DHNALLASSSIGDCVVE 592
           D +       +G C V 
Sbjct: 97  DRDNGWDDDLLGTCSVV 113

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 10/92 (10%)

Query: 510 GWIELVIVEARDLVAADLRGTSDPYVKV----QYGDLKKRTKVIFK-TLNPQWHQTLEF- 563
           G + L I++AR+L A D+ G SDPYVKV    +   LKK+   + K TLNP +++ L F 
Sbjct: 14  GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 564 --PD--DGSPLTLHVRDHNALLASSSIGDCVV 591
             P+  D   L + V D++ +  +  IG C V
Sbjct: 74  VPPENVDNVSLIIAVVDYDRVGHNELIGVCRV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDLK----KRTKVIFKTLNPQWHQTLEFP 564
           ++E RDL A    GT DP+ +V          KRTKV  KT NP++ +   F 
Sbjct: 5   VLECRDL-ALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFE 56

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKT-LNPQWHQTLEF---PD 565
           G + +V+++AR+L         DPY  ++ G + K+TK  F+   +P+W + L F    D
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED 60

Query: 566 DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ--GVRKGEIHVLIT 621
               L + V D +       IGD  V+          D W  L   G   GE+++ +T
Sbjct: 61  KKPILKVAVFDDDK-RKPDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT 117

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 515 VIVEARDLVAADLR-GTSDPYVKVQYGDLKK---RTKVIFKTLNPQWHQT---LEFPDD 566
            I  A DL  AD   G+SDPYV   +    K    T++I K LNP W +T   L  PD+
Sbjct: 6   TIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDE 64

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 12/74 (16%)

Query: 518 EARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLT----LH 573
           E ++LV        DPYV+V +   K +T V   + NP+W++ + FP+   PL     + 
Sbjct: 30  EKKELV--------DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81

Query: 574 VRDHNALLASSSIG 587
           +RD + +     IG
Sbjct: 82  IRDWDRVGNDDVIG 95

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 374 ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP-NHVWNQ 427
           IS    K+ V V E K+L+P D +G  DPYVKL+       +  Q+T+T     N VWN+
Sbjct: 8   ISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNE 67

Query: 428 KFELD 432
            F  D
Sbjct: 68  TFTFD 72

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 10/105 (9%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKV-IFKTLNPQWHQTLEF----PDDGSPL 570
           ++EA+DLV +D     + +VK Q G+   RT+    +  NP W++ L F    P +   L
Sbjct: 6   VIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFED-HL 64

Query: 571 TLHVRDHNALLASSSIGDCVVE----YQRLPPNQMADKWIPLQGV 611
            L V D         +G  V+      +R+    +  +W  L+  
Sbjct: 65  ILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERP 109

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 47.9 bits (115), Expect = 9e-07
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 8/112 (7%)

Query: 381 INVTVVEGKDLMPKDKSGKCDPYVKLQY-GKIVQRTRTAH---SPNHVWNQKFELDEIGG 436
           + V V+  ++L   D++GK DP+VK    G+ V +T+T     +P  VWN+ FE+     
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNP--VWNESFEVPVPSR 58

Query: 437 GEC-LMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELR 486
               L V+ Y+ +  G D+ +GSA ++L  L      ++ +PL+    G+L 
Sbjct: 59  VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLG 110

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 47.9 bits (115), Expect = 9e-07
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 510 GWIELVIVEARDLVAAD-LRGTSDPYVKVQYGDLKK--RTKVIFKTLNPQWHQTLEFP-- 564
           G + + I  AR L  +D + GT DPYV     + ++  RTKV   T NP W++T      
Sbjct: 2   GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN 61

Query: 565 DDGSPLTLHVRDHNALLASSSIGDCVVE 592
               PL L V D N       IG    +
Sbjct: 62  SLTEPLNLTVYDFNDKRKDKLIGTAEFD 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 14/108 (12%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTL 572
           +V+AR L A     ++DP V+V+ G+ K  TK I +T NP+W+Q   F  D   GS L +
Sbjct: 6   VVKARGLPA----NSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEV 61

Query: 573 HVRDHNALLASSSIGDCVVEYQ----RLPPN-QMADKWIPLQGVRKGE 615
            V D         +G    +      R+PP+  +A +W  L+  +KG 
Sbjct: 62  SVWD-KDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLED-KKGG 107

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 20/113 (17%)

Query: 376 RTGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF 429
            T  ++ V V++ ++L P D  G  DPYVK   LQ GK +++ +T+    + N V+N+ F
Sbjct: 11  PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAF 70

Query: 430 -------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW 474
                  +L+E+     L++   +++  G +E +G  +V L     G   + W
Sbjct: 71  SFDVPAEQLEEV----SLVITVVDKDSVGRNEVIG--QVVLGPDSGGEELEHW 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 26/224 (11%)

Query: 3   VWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQ 62
            WP  I P +S +    V ++L    P  I+ + L EF+LGS  P +    +  S+  D 
Sbjct: 233 FWP-IIEPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDT 291

Query: 63  RVMQLGFDWDANDIS--------------ILLLAKLAKPL-LGTAKIVINSLHIKGDL-- 105
            VM + F +  +DIS              I L+ K  K     T  I++  L  KG +  
Sbjct: 292 VVMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRV 351

Query: 106 ---LVMPILEGKAVLYSFVSIPDVR-IGVAFGSGGSQSLPATELPGVSNWLARLINETLV 161
              L+      K V +  + +P+   I V  G G    +    +PG+S ++  +IN TL 
Sbjct: 352 RVELMSKYPFIKTVSFQLLEVPEFDFILVPLG-GDFFGVDIFAIPGLSRFIQEIINSTLG 410

Query: 162 KTLVEPRRRCYSLPAV--DLRKKAVGGIVYVRVISASKLSRSSL 203
             L+ P      +  +       A+ G+V V++ SA  L +S  
Sbjct: 411 PMLLPPNSLTIDISQIMAGDSGTAI-GVVEVKIKSAEGLKKSDS 453

Length = 1227

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFP-DDGSPLT 571
           IV A +L A    G SDPYV +   + K+R   T+ I+ TLNP+W +  E     G PL 
Sbjct: 7   IVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLW 66

Query: 572 LH--VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIP 607
           +   V D + +      G   +   +L P +  D  +P
Sbjct: 67  ISATVWDRSFVGKHDLCGRASL---KLDPKRFGDDGLP 101

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 8/59 (13%)

Query: 513 ELVIVEARDLVAAD-LRGTSDPYVKVQY------GDLKKRTKVIFKTLNPQWHQTLEFP 564
           E+ I E R+L  AD  +  S+PYVKV Y         K++T V   T NP +++TL++ 
Sbjct: 17  EVHIKECRNLAYADEKKKRSNPYVKV-YLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH 74

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQY---GDLKKRTKVIFKTLNPQWHQTLEF 563
           ++ A ++   DL  T D YV++      D KKRTK I  ++NP W++T EF
Sbjct: 6   VLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEF 56

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGE 438
            + V VV G +L  +D +   DPYV L  G    +TR    + N VWN++  L       
Sbjct: 3   LLKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 439 CLMVKCYNEEIF-GDENMGSARVNLEGLVE 467
            L ++ ++++ F  D++MG A ++LE LVE
Sbjct: 62  PLKLEVFDKDTFSKDDSMGEAEIDLEPLVE 91

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 17/110 (15%)

Query: 520 RDL-VAADLRGTSDPYVKVQY-GDLKKRTKVIFKTLNPQWHQTLEF--PD-DGSPLTLHV 574
           + L  +    G   PY ++   G L   T+V  KT NP W+ + EF   D   S +T+ V
Sbjct: 1   KGLDTSESKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVV 60

Query: 575 RD----HNALLASSSI--GDCVVEYQRLPPNQMADKWIPLQGVRKGEIHV 618
           +D    H+ +L S SI   D +          +  +W PL G  +G I +
Sbjct: 61  KDDRDRHDPVLGSVSISLNDLIDA------TSVGQQWFPLSGNGQGRIRI 104

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 13/115 (11%)

Query: 383 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH----SPNHVWNQ--KFELDEIGG 436
           V V++ ++L  K K  K DPY  L+ G + ++T+T       P   W++  +FE+ E   
Sbjct: 5   VVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHP--EWDEELRFEITE--D 60

Query: 437 GECLM-VKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPL--EKVNTGELRLQ 488
            + ++ V  ++++    + +G   V+L   ++    D W  L  +    GE+ L+
Sbjct: 61  KKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLE 115

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQ-----YGDLKKRTKVIFKTLNPQWHQTLEF 563
           I+   +L A D  G SDP+VK+          K +T+V  KTLNP++++   +
Sbjct: 19  IIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFY 71

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 8/66 (12%)

Query: 516 IVEARDLVAADLR-GTSDPYVKVQYGDLKK---RTKVIFKTLNPQWHQTLEF----PDDG 567
           I+E RDL A D + GTSDPYVK+Q    K+   +T+V+ KT NP + +T  F     +  
Sbjct: 22  IIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQL 81

Query: 568 SPLTLH 573
             L+LH
Sbjct: 82  QDLSLH 87

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 381 INVTVVEGKDLMPKDKSGKCDPYVK--LQYG-KIVQRTRTA---HSPNHVWNQKFELD 432
           I V +++ ++L   D +G  DPYVK  L Y  K V++ +T     + N V+N+ F  +
Sbjct: 17  ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 26/111 (23%)

Query: 388 GKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH---SPNHVWNQ--KFELDEIGGGECLMV 442
            +DL+  DKSG  DP+ ++ +    Q T       SP   W+Q   F+  E+ G      
Sbjct: 10  ARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSP--TWDQTLIFDEVELYGS----P 63

Query: 443 KCYNE-------EIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELR 486
           +   +       E+F  +++G          E   R +  PL K++  E  
Sbjct: 64  EEIAQNPPLVVVELFDQDSVGKD--------EFLGRSVAKPLVKLDLEEDF 106

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 13/118 (11%)

Query: 383 VTVVEGKDLMPKDKSGKCDPYVKL---QYGKIVQRTRT-AHSPNHVWNQKFELDEIGGGE 438
           + +V  ++L     +G  DPYV L      + + +TRT   + N  W+++FEL+   G  
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 439 C-LMVKCYNEEIFGDENM-GSARVNLEGLV---EGSVRDIWVPLEKVNT-GELRLQIE 490
             +    ++    G  ++ G A + L+      +G  R+IW+ L   +T G L L++ 
Sbjct: 65  LWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL---DTQGRLLLRVS 119

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 383 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQK--FELDEIGGGE 438
           V ++  K L   D  GK DPYV +Q     ++++ A     N  WN+K  F ++  G G 
Sbjct: 5   VLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGG 64

Query: 439 C--LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVR 471
              L+++  +++ F  D+ +G A ++L+GL E  V 
Sbjct: 65  DTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVE 100

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTL----EFP 564
           G +E++++ A+ L   D  G  DPYV +Q    ++++KV      NP+W++      E+P
Sbjct: 1   GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYP 60

Query: 565 DDG--SPLTLHVRDHNALLASSSIGD 588
             G  + L L + D +       IG+
Sbjct: 61  GWGGDTKLILRIMDKDNFSDDDFIGE 86

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 19/118 (16%)

Query: 513 ELVIVEARDLVAADLRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDDGSP-- 569
            L I+EA++L +   +GT DPY  V    ++  RTK + K LNP W +   F DD  P  
Sbjct: 3   RLRILEAKNLPS---KGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVF-DDPPPDV 57

Query: 570 ----LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHV 618
               L+ + +D  +      IG   V   +L   Q  D+W PL  V      +G + +
Sbjct: 58  TFFTLSFYNKDKRSKDRDIVIG--KVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRL 113

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|175994 cd04028, C2B_RIM1alpha, C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 508 GNGWIELVIVEARDLVA-ADLRGTSDPYVKV------QYGDLKKRTKVIFKTLNPQWHQT 560
             G +E+ ++ AR LV     +    PYVKV      +    KK+TK+  KTL+P + Q 
Sbjct: 27  KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIA-KKKTKIARKTLDPLYQQQ 85

Query: 561 LEFPDDGSPLTLHV 574
           L F    +  TL V
Sbjct: 86  LVFDVSPTGKTLQV 99

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 146

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 10/89 (11%)

Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQ--YGD---LKKRTKVIFKTLNPQWHQTL--EFP 564
           + +V+++AR L   D+ G +DPYVKV   YG     KK+T V   TLNP ++++   + P
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 565 DDGSP---LTLHVRDHNALLASSSIGDCV 590
            +      +   V D + +  +  IG  V
Sbjct: 77  SEELEDISVEFLVLDSDRVTKNEVIGRLV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 37/127 (29%)

Query: 514 LVIVEARDLVAADLRGTSDPY------VKVQYG-----------------------DLKK 544
           + ++EA+ L+A D+ G SDPY         +                            K
Sbjct: 32  VTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIK 91

Query: 545 RTKVIFKTLNPQWHQTLEFP-DDGSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQM 601
            T+V  +TLNP W++T  F  +D S   LH+   DH+       +G   +  + LP   +
Sbjct: 92  VTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGL 147

Query: 602 ADKWIPL 608
            D W  L
Sbjct: 148 -DSWFKL 153

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRT-AHSPNHVWN 426
           ++ V +VEG+DL P + +GK DPY ++  G    +T+  + + N  WN
Sbjct: 16  RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWN 63

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 510 GWIELVIVEARDLVAADLRGTSDPYVKVQY-GDLKKRTKVIFKTLNPQWHQTLEFP--DD 566
           G + L I +A DL   +  G  DPYV+V   G +K RT  I  TLNP W + L  P    
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP 60

Query: 567 GSPLTLHVRDHNALLASSSIGDC 589
              +TL V D+  +    S+G  
Sbjct: 61  NQKITLEVMDYEKVGKDRSLGSV 83

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 15/117 (12%)

Query: 387 EGKDLMP-KDKSGKCDPYVKLQYGKIVQRTRT-AHSPNHVWNQKFELDEIGGGECLMVKC 444
           +G D++  KD  G  D Y   +YG    RTRT   S N  WN+++          L V  
Sbjct: 10  QGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGV 69

Query: 445 Y-NEEIFGDEN------MGSARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQ 488
           + N +    E       +G  R+ L  L +  V     PL  +N       GEL   
Sbjct: 70  FDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQ-YGDLKKRTKVIFK--TLNPQWHQTLEFP---- 564
           +E+ I+ A DL   +L G    Y  V      K+ T V     T NP W++TL FP    
Sbjct: 2   LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGT-NPTWNETLRFPLDER 60

Query: 565 ---DDGSPLTLHVRDHNALLASSSIGDCVV 591
                   LT+ V      L    IG+  V
Sbjct: 61  LLQQGRLALTIEVYCERPSLGDKLIGEVRV 90

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 514 LVIVE-ARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF----PDDGS 568
            V ++ A++L  A       PYV++  G   +++KV  +T NP W +   F    P++  
Sbjct: 3   FVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQE 62

Query: 569 PLTLHVRDHNALLASSSIGDCVVEYQRLPPNQM--ADKWIPLQG 610
            L + V+D        S+G   +    L        D+  PL  
Sbjct: 63  -LEIEVKDDK---TGKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQY---GDLKKRTKVIFKTLNPQWHQTLEF 563
           +++AR+L   D  GT+DPY KV+        K++K+  KTLNP++ ++  F
Sbjct: 22  LIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVF 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 11/105 (10%)

Query: 516 IVEARDLVAADLR-GTSDPYVKVQ-YGDL----KKRTKVIFKTLNPQWHQTLEFPDD--- 566
           +++ +DL AAD +   SDPYVK     D     K++T V  KTLNP +++TL +  +   
Sbjct: 21  VIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE 80

Query: 567 --GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
                L L V   ++L  +S +G+  V+      +     W PLQ
Sbjct: 81  LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 514 LVIVEARDLVAADLRGTSDPYVKVQYGDLKK-------RTKVIFKTLNPQWHQTLEF 563
           + ++   DL   D+ G SDPYVK+   D          +TK I KTLNP+W++   F
Sbjct: 4   VKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 395 DKSGKCDPYVKLQY-GKIVQRTRTA-HSPNHVWNQKFE--LDEIGGGECLMVKCYNEEIF 450
            K+G   PY +L   GK+V  TR    + N  WN   E  + +      + V   ++   
Sbjct: 8   SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSR-VTVVVKDDRDR 66

Query: 451 GDENMGSARVNLEGLVE-GSVRDIWVPLEKVNTGELRL 487
            D  +GS  ++L  L++  SV   W PL     G +R+
Sbjct: 67  HDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRI 104

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 528 RGTSDPYVKVQYGDLKK----RTKVIFKTLNPQWHQTLEFP--DDGSPLTLHVRDHNALL 581
           + TSDPY  V   DL      RT+VI  + NP W+++         S +   V+D N ++
Sbjct: 55  KITSDPYATV---DLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKD-NDVV 110

Query: 582 ASSSIGDCVVEYQRLPPNQMADKWIPL 608
            +  IG   +  + L   +  + W+P+
Sbjct: 111 GAQLIGRAYIPVEDLLSGEPVEGWLPI 137

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQY-GDLKKRTKVIFKTLNPQWHQTLEFPD-DGSP 569
           + L ++ A  L   DL    DP+  +   G     T V  KTL+P+W++  +      S 
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSI 61

Query: 570 LTLHVRDH 577
           +T+ V D 
Sbjct: 62  ITIQVFDQ 69

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 43.2 bits (102), Expect = 5e-04
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 510 GWIELVIVEARDLVAAD--LRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD 566
           G +E+ I  A  L  +D  + GT DPY+ V + D +  +T+V   TLNP W++T     +
Sbjct: 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLN 495

Query: 567 --GSPLTLHVRDHNALLASSSIGD 588
               PL L + D N+  +   +G 
Sbjct: 496 SFTDPLNLSLYDFNSFKSDKVVGS 519

Length = 1227

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQ-YGKIVQRTR--TAHSPNHVWNQK--FELDE- 433
            + +T++  +DL   +  GK   Y  +       Q T        N  WN+   F LDE 
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDER 60

Query: 434 --IGGGECLMVKCYNEE-IFGDENMGSARVNLEGLVEGS 469
               G   L ++ Y E    GD+ +G  RV L+ L++G+
Sbjct: 61  LLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGA 99

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 20/105 (19%)

Query: 519 ARDLVAADLRGTS-DPYVKVQY--GDL----KKRTKVIFKTLNPQWHQTLEFPDDGSPLT 571
           A++L    L G+  DPYVK  Y   D     K++TKV+ KT NP +++ L +  DG P+ 
Sbjct: 22  AKNLPL--LDGSDPDPYVKT-YLLPDPQKTTKRKTKVVRKTRNPTFNEMLVY--DGLPVE 76

Query: 572 --------LHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL 608
                   + V  H++L+ +  +G   +  ++L  +Q  +KW PL
Sbjct: 77  DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 16/123 (13%)

Query: 383 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH-VWNQK--FELDEIGGGEC 439
           VTV++ + L+ K KSG  D YV +Q GK    T         VW ++  FEL  +  G  
Sbjct: 3   VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62

Query: 440 ----LMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDI--WVPLE------KVNTGELR 486
               L +   +  + G D+ +G   + L  L E   R    W  LE          GE+ 
Sbjct: 63  NRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIE 122

Query: 487 LQI 489
           + I
Sbjct: 123 VDI 125

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 382 NVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFE 430
            V V+    L   D  GK DP+  L+      +T T + + N  WN+ F 
Sbjct: 4   QVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFT 53

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 384 TVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFELD---EIGGGEC 439
            VV  K+L      GK D   K+ +  + ++TR      N VWN+ FE          E 
Sbjct: 1   LVVSLKNL--PGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDES 58

Query: 440 LMVKCYN-EEIFGDENMGSARVNLEGLVEGS 469
           L +   + E++  +  +GSA V+L+ LV   
Sbjct: 59  LEIVVKDYEKVGRNRLIGSATVSLQDLVSEG 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 39/149 (26%)

Query: 383 VTVVEGKDLMPKDKSGKCDPY--VKLQYGK--IVQRT---RTAHSPNHVWNQKFELDEIG 435
           V V+E +DL  K  +G CDP+  V L Y      +RT   +  ++P   +++ F  +   
Sbjct: 3   VRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNP--RFDEAFYFELTI 59

Query: 436 GGE----------------CLMVKCYNEE-IFGDENMGSARVNLEGLVEGSVRDIWVPLE 478
           G                   L V+ ++   + GD+ +G  R+ L+GL +      W    
Sbjct: 60  GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAW---- 115

Query: 479 KVNTGELRLQIEATRVDDNEGSRGQNIGS 507
                   LQ           S   ++GS
Sbjct: 116 ------YFLQPREAP--GTRSSNDGSLGS 136

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 7/46 (15%)

Query: 526 DLRGTSDPYVKVQ-YGD-----LKKRTKVIFK-TLNPQWHQTLEFP 564
           D     DPYV+V+ +G       K +TKV+     NP W++T EF 
Sbjct: 20  DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD 65

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 375 SRTGR-KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH-VWNQKFELD 432
           +R G   + VTV+    L   D     D YVK+ +G   +RT    + N+  WN  F+  
Sbjct: 23  TRRGLATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFG 81

Query: 433 --EIGGGECLMVKCYNEEIFGDENM-GSARVNLEGLVEGSVRD 472
             E+  G  L  + ++ +   D+++ G+  V  E    G   D
Sbjct: 82  SVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPE---AGVHED 121

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 26/126 (20%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQ--TLEFPDDGSP---- 569
           +++AR L+     GT+D YV +Q G  K  T V  KT +P W +  + E P   S     
Sbjct: 5   VLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNR 64

Query: 570 --LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMAD-------KWIPLQGVR------KG 614
             L L V   N L     +G        +P N + +       +W  L+         +G
Sbjct: 65  ATLQLTVMHRNLLGLDKFLG-----QVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERG 119

Query: 615 EIHVLI 620
           EI V I
Sbjct: 120 EIEVDI 125

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 10/109 (9%)

Query: 379 RKINVTVVEGKDLMPKDKSGKCDPY----VKLQYGKIVQRTRTAHSPNHVWNQKFELDEI 434
           RK+ VTV+  +D+  KD+ G    +    V L   K   +T+    PN V+N+ F    +
Sbjct: 16  RKLTVTVIRAQDIPTKDRGG-ASSWQVHLVLLPSKKQRAKTKVQRGPNPVFNETFTFSRV 74

Query: 435 GGGE----CLMVKCYNEEIFGDENM-GSARVNLEGLVEGSVRDIWVPLE 478
              E     L  + Y  E    E + G   V L  L       +W+ LE
Sbjct: 75  EPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 22/130 (16%)

Query: 509 NGWIELVIVEARDLVAAD----LRGTS------DPYVKVQYGDLK-KRTKVIFKTLNPQW 557
            G +++ I EA DL   D               DPYV +   D    +T    KT +P W
Sbjct: 3   TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVW 62

Query: 558 HQTLEFPDD---GSPLTLHVRDHNALLASSS-IGDCVVEYQRLPPNQMADK--WIPLQGV 611
           ++  EF  +   G  L L V  H+A +     + +C + ++ L          W+ L+  
Sbjct: 63  NE--EFTTEVHNGRNLELTVF-HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-- 117

Query: 612 RKGEIHVLIT 621
            +G++HV I 
Sbjct: 118 PQGKLHVKIE 127

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 516 IVEARDLVAADLRGTSDPY--VKVQYGDLK---KRTKVIFKTLNPQWHQTLEFP 564
           ++E  DL   +  GT DPY  V + Y + K   KRTKV  KT NPQ+ +   F 
Sbjct: 6   VIECSDLALKN--GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFD 57

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 545 RTKVIFKTLNPQWHQTLEF--PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMA 602
           RTK + K+L P + +   F  P     L+ ++ D + L   S IG   ++ + L      
Sbjct: 37  RTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGK 96

Query: 603 DKWIPLQGVR-----KGEIHV 618
           D W PLQ V      +G++H+
Sbjct: 97  DTWFPLQPVDADSEVQGKVHL 117

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	726
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	100.0
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.96
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.93
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.93
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.89
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.87
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.85
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.84
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.83
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.83
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.83
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.82
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.82
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.81
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.81
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.81
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.81
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.81
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.81
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.81
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.8
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.8
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.8
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.79
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.79
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.79
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.79
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.79
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.78
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.78
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.78
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.78
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.78
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.78
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.78
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.78
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.78
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.77
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.77
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.77
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.77
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.77
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.76
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.76
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.76
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.76
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.75
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.75
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.75
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.75
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.75
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.75
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.74
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.74
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.74
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.74
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.73
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.73
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.73
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.73
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.72
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.72
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.72
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.72
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.71
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.71
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.71
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.71
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.71
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.71
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.71
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.71
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.71
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.7
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.7
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.7
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.7
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.7
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.7
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.7
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.7
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.7
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.7
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.69
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.69
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.69
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.69
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.69
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.69
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.69
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.68
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.68
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.68
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.68
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.67
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.67
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.67
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.67
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.66
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.66
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.66
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.66
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.66
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.66
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.66
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.66
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.66
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.65
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.65
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.65
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.65
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.65
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.64
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.64
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.64
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.64
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.64
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.64
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.64
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.64
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.63
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.63
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.63
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.63
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.63
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.63
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.62
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.62
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.62
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.62
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.61
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.61
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.61
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.6
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.6
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.6
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.6
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.6
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.6
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.6
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.59
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.59
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.59
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.59
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.59
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.58
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.58
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.58
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.58
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.58
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.57
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.57
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.57
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.57
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.56
PLN03008	868	Phospholipase D delta	99.56
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.56
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.55
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.55
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.55
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.54
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.53
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.53
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.53
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.53
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.53
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.52
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.52
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.52
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.5
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.5
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.5
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.49
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.49
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.49
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.49
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.49
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.47
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.47
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.46
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.46
PLN03008	868	Phospholipase D delta	99.46
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.46
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.46
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.46
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.46
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.44
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.44
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.43
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.43
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.42
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.39
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.38
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.38
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.38
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.34
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.34
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.34
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.33
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.29
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.29
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.24
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.24
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.16
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	99.12
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.06
PLN02223	537	phosphoinositide phospholipase C	99.04
PLN02270	808	phospholipase D alpha	99.02
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.0
PLN02270	808	phospholipase D alpha	98.99
PLN02952	599	phosphoinositide phospholipase C	98.96
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.93
PLN02230	598	phosphoinositide phospholipase C 4	98.88
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.88
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	98.87
PLN02223	537	phosphoinositide phospholipase C	98.83
PLN02222	581	phosphoinositide phospholipase C 2	98.82
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.8
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.77
PLN02228	567	Phosphoinositide phospholipase C	98.76
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.74
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.73
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.71
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.69
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.62
PLN02230	598	phosphoinositide phospholipase C 4	98.62
PLN02222	581	phosphoinositide phospholipase C 2	98.59
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.54
PLN02952	599	phosphoinositide phospholipase C	98.49
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.47
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.46
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.46
PF10296	91	DUF2404: Putative integral membrane protein conser	98.35
PLN02228	567	Phosphoinositide phospholipase C	98.29
PLN02352	758	phospholipase D epsilon	98.29
PLN02352	758	phospholipase D epsilon	98.2
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.19
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.13
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.9
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.84
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.79
PLN02964	644	phosphatidylserine decarboxylase	97.78
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.5
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.32
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.17
PLN02964	644	phosphatidylserine decarboxylase	97.08
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.06
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.02
KOG3837	523	consensus Uncharacterized conserved protein, conta	96.9
PF15627	156	CEP76-C2: CEP76 C2 domain	96.05
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.69
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	95.33
PF15627	156	CEP76-C2: CEP76 C2 domain	95.08
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	94.92
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	94.91
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	94.39
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	94.39
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	94.36
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	93.91
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	93.87
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	93.81
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	93.67
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	93.64
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	92.46
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	92.07
KOG1452	442	consensus Predicted Rho GTPase-activating protein	91.77
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	90.77
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	90.57
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	90.34
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	90.01
KOG1452	442	consensus Predicted Rho GTPase-activating protein	89.3
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	89.29
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	88.46
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	87.97
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	87.59
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	87.1
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	86.03
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	84.83
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	84.17
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	83.57
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	82.14
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	81.46
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	81.38

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=100.00  E-value=1.3e-73  Score=641.90  Aligned_cols=561  Identities=22%  Similarity=0.294  Sum_probs=462.6

Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHhhcCCcccceEEEeEEeeCCCCcccceeeeEeCCCCCEEEEEEeEEecCCchhhhhh
Q 004872            2 EVWPGYINPKLSIRFSQIVEKRLKHRKPRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDANDISILLL   81 (726)
Q Consensus         2 ~~W~~~~~~~~s~~~~~~ve~~l~~~~P~~i~~~~~~~f~lG~~pp~i~~v~~~~~~~~d~~~~d~~~~~~~~~~~~~~~   81 (726)
                      +|||++ ||.+|++|.+++|+.|+++.|+||++++|++||||++||||++||+|+++++|.+.|||+|+|+|+|++++.+
T Consensus       232 KfW~i~-eP~iSqqV~dqvn~~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~sD~t~  310 (1227)
T COG5038         232 KFWPII-EPSISQQVVDQVNQQLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDISDVTA  310 (1227)
T ss_pred             hheecc-ChHHHHHHHHHHHHHHHhhcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccchhhhhh
Confidence            799997 9999999999999999999999999999999999999999999999999999999999999999999998743


Q ss_pred             --------------hhhcCCccc-eeEEEEEeeEEEeEEEEe-----eeeceeEEEEEeecCceEEE-EeeecCCCCCcc
Q 004872           82 --------------AKLAKPLLG-TAKIVINSLHIKGDLLVM-----PILEGKAVLYSFVSIPDVRI-GVAFGSGGSQSL  140 (726)
Q Consensus        82 --------------~~~~~~~~g-~~~i~v~~~~~~G~~rv~-----~~p~~~~v~~sf~~~P~v~~-~~~~g~~~~~~~  140 (726)
                                    ++.|+.... ++||+|+++.|+|++|++     ++|+++.|++||||.|+||| .+++|.+ .|++
T Consensus       311 ~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~-~~g~  389 (1227)
T COG5038         311 TSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFILVPLGGD-FFGV  389 (1227)
T ss_pred             HHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecCcceeEEEEEcCCC-ccce
Confidence                          334444333 899999999999999999     78999999999999999999 8899988 8999


Q ss_pred             CCccCCCHHHHHHHHHHHhhhccccCCceeeecCcccccc-ccccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCc
Q 004872          141 PATELPGVSNWLARLINETLVKTLVEPRRRCYSLPAVDLR-KKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSS  219 (726)
Q Consensus       141 ~i~~iPgl~~~~~~~i~~~l~~~~v~P~~~~~~l~~~~~~-~~~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy  219 (726)
                      |||+||||++||+++|+++|++||++|+++++||+.++++ ...++|||.|+|.+|++|+..+..               
T Consensus       390 dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~---------------  454 (1227)
T COG5038         390 DIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDST---------------  454 (1227)
T ss_pred             eEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCccccccc---------------
Confidence            9999999999999999999999999999999999999987 778999999999999999988721               


Q ss_pred             cccccCCCCcCcEEEEEEc--cEEeeeecCCCCCCcccceeEEEEecCCceEEEEEEEeCCCCCCcceeEEEEEeceecc
Q 004872          220 LEEHYEDKDLTTFVEIELE--ELTRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  297 (726)
Q Consensus       220 ~~~~~~~k~~DPyV~v~~g--~~~rTt~i~~t~nP~WnEtf~~~v~~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~  297 (726)
                          +++. +|||+++.+.  ...||++++++.||+|||+||+++++.++.|.++|||.+.. .+|+.+|++.++|..|.
T Consensus       455 ----i~~~-vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~-~sd~vvG~~~l~L~~L~  528 (1227)
T COG5038         455 ----INGT-VDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSF-KSDKVVGSTQLDLALLH  528 (1227)
T ss_pred             ----ccCC-CCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEecccc-CCcceeeeEEechHHhh
Confidence                1111 2888888874  34689999999999999999999999999999999998886 88999999999999998


Q ss_pred             CCCcceeecCCCCccccccccccCceeeeeeecCCccccEEEEEEEeeeeecCCCCCCCCCccCCCCccccc--CCcccc
Q 004872          298 DDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSG--SSNFIS  375 (726)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~l~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~~~~~  375 (726)
                      +++..                 .++..++.  ...++.|+|.+++.+-+-..+..             ...+  .|....
T Consensus       529 ~~~~~-----------------~ne~~e~~--~~~k~vGrL~yDl~ffp~~e~k~-------------~~~~s~e~~ed~  576 (1227)
T COG5038         529 QNPVK-----------------KNELYEFL--RNTKNVGRLTYDLRFFPVIEDKK-------------ELKGSVEPLEDS  576 (1227)
T ss_pred             hcccc-----------------ccceeeee--ccCccceEEEEeeeeecccCCcc-------------ccccccCCcccC
Confidence            76532                 11222221  23346799998874332111100             0111  112222


Q ss_pred             CCccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-CCeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCCCC
Q 004872          376 RTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-GKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGD  452 (726)
Q Consensus       376 ~~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-g~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d  452 (726)
                      .+ |++.+++.++++|.... ......+++++. +++++.|+++ .+.+|.||+.+...+.+. ...+.+.++|..  ..
T Consensus       577 n~-GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~--~g  652 (1227)
T COG5038         577 NT-GILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ--SG  652 (1227)
T ss_pred             Cc-ceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccc--cC
Confidence            24 49999999999996532 222333488888 5678888999 999999999999988775 678889998876  36


Q ss_pred             cceEEEEEEccccccCC-eeeeeeeccccccceeEEEEEEEEecCCCCCCCC-CCCCCceEEEEEEEEeecCcccccCCC
Q 004872          453 ENMGSARVNLEGLVEGS-VRDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQ-NIGSGNGWIELVIVEARDLVAADLRGT  530 (726)
Q Consensus       453 ~~iG~~~i~L~~l~~~~-~~~~w~~L~~~~~G~I~l~~~~~~~~~~~~~~~~-~~~~~~g~L~v~v~~a~~L~~~d~~g~  530 (726)
                      +.||....+|.+++... ....||++. .++|+|.++..|.|+....++... .+..+.|.++|.|..|.+|......+.
T Consensus       653 ~~i~~~~~~l~~li~~t~dt~~~f~~~-~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~  731 (1227)
T COG5038         653 KVIATEGSTLPDLIDRTLDTFLVFPLR-NPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGK  731 (1227)
T ss_pred             ceeccccccchHhhhccccceEEEEcC-CCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcc
Confidence            78899899999988655 567899998 478999999999999876655443 377899999999999999998889999


Q ss_pred             CccEEEEEECC-eEEEeEeeeCCCCCeeeeEEEEec--CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCc---eee
Q 004872          531 SDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPD--DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQM---ADK  604 (726)
Q Consensus       531 ~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v--~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~---~~~  604 (726)
                      +|||++|.+++ .++||-....++||.||+..+.++  ..+.+.++++|++..+.|.++|++.++.+++.....   ...
T Consensus       732 ~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~  811 (1227)
T COG5038         732 SDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALME  811 (1227)
T ss_pred             cccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEE
Confidence            99999999987 478999999999999999999998  467799999999999999999999999988754211   111


Q ss_pred             ---------EEecC-CCCCeEEEEEEEE
Q 004872          605 ---------WIPLQ-GVRKGEIHVLITR  622 (726)
Q Consensus       605 ---------w~~L~-~~~~G~i~l~l~~  622 (726)
                               -+.+. -..+|++.+.+.|
T Consensus       812 ~i~g~~~t~~l~~~~~~~~~tit~~~~f  839 (1227)
T COG5038         812 TIDGAEETGKLSLTGKKVKGTITYKCRF  839 (1227)
T ss_pred             eecCcccccccccccCCcceeEEEEEEE
Confidence                     11121 2346999999999

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-27  Score=260.42  Aligned_cols=216  Identities=32%  Similarity=0.489  Sum_probs=188.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC-C
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-G  451 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~-~  451 (726)
                      .|.|+|.+|++|+.++..|.+||||++++   .+.+.+|++. +++||.|||+|.|.+..   ....|.+.|||.|++ +
T Consensus       168 ~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr  247 (421)
T KOG1028|consen  168 LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSR  247 (421)
T ss_pred             EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCccc
Confidence            79999999999999997788999999999   3468999999 99999999999999654   377999999999999 9


Q ss_pred             CcceEEEEEEccccccCCeeeeeeecccc------ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCccc
Q 004872          452 DENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAA  525 (726)
Q Consensus       452 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~  525 (726)
                      +++||++.++|..+........|.+|...      ..|+|.++++|.              +..|.|+|.|++|++|...
T Consensus       248 ~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~--------------p~~g~ltv~v~kar~L~~~  313 (421)
T KOG1028|consen  248 HDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYL--------------PTAGRLTVVVIKARNLKSM  313 (421)
T ss_pred             ccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEee--------------cCCCeEEEEEEEecCCCcc
Confidence            99999999999998776667789999763      237999999999              5679999999999999999


Q ss_pred             ccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccc
Q 004872          526 DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQR  595 (726)
Q Consensus       526 d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~  595 (726)
                      +..+.+||||++++-.     .+++|.+.++++||+|||+|.|.++     +..|.|+|||+|.++++++||++.+....
T Consensus       314 ~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  314 DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence            9999999999999932     3679999999999999999999874     56899999999999999999999998764


Q ss_pred             c------------CCCCceeeEEecC
Q 004872          596 L------------PPNQMADKWIPLQ  609 (726)
Q Consensus       596 l------------~~~~~~~~w~~L~  609 (726)
                      -            .++.+..+|+.|.
T Consensus       394 ~~~~~~hW~~m~~~p~~pv~~wh~l~  419 (421)
T KOG1028|consen  394 TGEEVRHWQEMLNSPRKPVAQWHSLR  419 (421)
T ss_pred             CchHHHHHHHHHhCccCceeeeEecc
Confidence            1            2344566676664

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.93  E-value=8.1e-24  Score=240.47  Aligned_cols=432  Identities=16%  Similarity=0.206  Sum_probs=293.0

Q ss_pred             CCCHHHHHHHHHHHhhhccccCCce---eeecC-----ccccc-------cccccccEEEEEEEeecCCCCCCCCCCCcc
Q 004872          145 LPGVSNWLARLINETLVKTLVEPRR---RCYSL-----PAVDL-------RKKAVGGIVYVRVISASKLSRSSLRGSPSR  209 (726)
Q Consensus       145 iPgl~~~~~~~i~~~l~~~~v~P~~---~~~~l-----~~~~~-------~~~~~~GvL~V~v~~A~~L~~~~~~g~~~~  209 (726)
                      |+...+-+.++|..++...++.|.+   -.+.+     |.-..       -...++|+++|+|..|.+|......|.   
T Consensus       655 i~~~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~---  731 (1227)
T COG5038         655 IATEGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGK---  731 (1227)
T ss_pred             eccccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcc---
Confidence            5667777889999999998888886   22332     21111       123588999999999999986554443   


Q ss_pred             cccccCCCCccccccCCCCcCcEEEEEEccE--EeeeecCCCCCCcccceeEEEEecCCceEEEEEEEeCCCCCCcceeE
Q 004872          210 RQQNYSADSSLEEHYEDKDLTTFVEIELEEL--TRRTDARPGSDPRWDSMFNMVLHEETGTVRFNLYECIPGHVKYDYLT  287 (726)
Q Consensus       210 ~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~~--~rTt~i~~t~nP~WnEtf~~~v~~~~~~L~~~V~D~d~~~~~dd~lG  287 (726)
                                         +|||++|.++..  +||-....+.||.|||..|..+.+..+.+.++++|.+.. +.|..||
T Consensus       732 -------------------~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~s-gddr~lg  791 (1227)
T COG5038         732 -------------------SDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYEES-GDDRNLG  791 (1227)
T ss_pred             -------------------cccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeeeeecchhc-cccceec
Confidence                               399999999854  455556799999999999999999999999999999986 7788999


Q ss_pred             EEEEeceeccCCCcceeecCCCCccccccccccCce--eeeeeecCCccccEEEEEEEeeeeecC--C--CC--------
Q 004872          288 SCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDE--VEMTVPFEGVNSGELTVRLVLKEWQFS--D--GS--------  353 (726)
Q Consensus       288 ~~~i~L~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~G~l~~~l~~~~~~~~--~--~~--------  353 (726)
                      ++.++++++....       +++....-.   .|.+  ..+..+ ..+.+|.+.+...+.+....  .  ..        
T Consensus       792 ~~~i~vsn~~~k~-------~~s~~~~~i---~g~~~t~~l~~~-~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e  860 (1227)
T COG5038         792 EVNINVSNVSKKD-------EDSALMETI---DGAEETGKLSLT-GKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSE  860 (1227)
T ss_pred             eeeeeeeeeeecC-------CCcceEEee---cCcccccccccc-cCCcceeEEEEEEEEeecccCChHHhcchhhhhhH
Confidence            9999999987521       111111000   0110  011111 11234555554422221000  0  00        


Q ss_pred             -----------CC----CCCccC---------CC------CcccccCCccccCCccEEEEEEEEeecCCCCCCCCCCCcE
Q 004872          354 -----------HS----LNNFHS---------GS------QQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPY  403 (726)
Q Consensus       354 -----------~s----~~~~~~---------~~------~~~~~~~~~~~~~~~~~L~V~V~~a~~L~~~d~~g~~dpy  403 (726)
                                 ..    ..+...         ..      +.+......++... |.+.+.+..++=..       +.-|
T Consensus       861 ~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~s-gv~~i~i~~g~l~~-------~~~~  932 (1227)
T COG5038         861 KRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKS-GVLGIQILSGELPD-------PGQY  932 (1227)
T ss_pred             HHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccC-CceEEEEEEeecCC-------cceE
Confidence                       00    000000         00      00011111123334 48888888876332       3347


Q ss_pred             EEEEECC--e-EeeccccCCCCCceeeEEEEEeeC-CceeEEEEEEeecCCCCcceEEEEEEccccccCC-eeeeeeecc
Q 004872          404 VKLQYGK--I-VQRTRTAHSPNHVWNQKFELDEIG-GGECLMVKCYNEEIFGDENMGSARVNLEGLVEGS-VRDIWVPLE  478 (726)
Q Consensus       404 v~v~lg~--~-~~kT~~~~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~~-~~~~w~~L~  478 (726)
                      +.+.++.  . ..-+....+..+.|.+.-...+.+ .-...+|+|.+.....++.++...++-.++..+. ..+.|+.+.
T Consensus       933 l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~ 1012 (1227)
T COG5038         933 LQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFP 1012 (1227)
T ss_pred             EEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecC
Confidence            7777743  2 222222134445555443344433 3456788888863337889999888887777655 566788887


Q ss_pred             ccccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECCe-EEEeEeeeCCCCCee
Q 004872          479 KVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQW  557 (726)
Q Consensus       479 ~~~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~w  557 (726)
                      +.  ..+.+++.|.|+..  .......-...|.|.|.+..|+||++.|.+|.+||||++.++++ .++|+++++|+||+|
T Consensus      1013 g~--~~~~v~~~~tPv~~--~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvw 1088 (1227)
T COG5038        1013 GS--AKVLVQVSYTPVPV--KLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVW 1088 (1227)
T ss_pred             CC--ceEEEEEEEeeccc--ccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCc
Confidence            64  78999999998821  22223344567999999999999999999999999999999886 789999999999999


Q ss_pred             eeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC----CeEEEEEEEE
Q 004872          558 HQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR----KGEIHVLITR  622 (726)
Q Consensus       558 ne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~----~G~i~l~l~~  622 (726)
                      ||.+..++.   .+.+.+.|+|+|.-.+++.||.+.++|..+..+.....-.+|.|..    .|.++..+.+
T Consensus      1089 NEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~ 1160 (1227)
T COG5038        1089 NEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNF 1160 (1227)
T ss_pred             cccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccCcceEecccEeecceec
Confidence            999999985   5789999999999999999999999999999998888889998754    4666666555

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.3e-25  Score=244.61  Aligned_cols=214  Identities=23%  Similarity=0.291  Sum_probs=184.4

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC---eEEEeEeeeCCCCCee
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQW  557 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~w  557 (726)
                      ..|+|.+++.|.              .....|.|+|++|++|++.+..|.+||||++++..   .+.+|+++++|+||+|
T Consensus       152 ~~G~l~fsl~Yd--------------~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~f  217 (421)
T KOG1028|consen  152 AVGNLQFSLQYD--------------FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVF  217 (421)
T ss_pred             eeeeEEEEEEec--------------ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCcc
Confidence            469999999887              67799999999999999999788999999999965   4679999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC------CCeEEEEEEEEEecC
Q 004872          558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITRKVPE  626 (726)
Q Consensus       558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~~~p~  626 (726)
                      ||+|.|.+.     ...|.+.|||+|+|++|++||++.++|..+........|.+|...      ..|||+++++| +|.
T Consensus       218 nEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y-~p~  296 (421)
T KOG1028|consen  218 NETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCY-LPT  296 (421)
T ss_pred             ccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEe-ecC
Confidence            999999963     689999999999999999999999999999887778899999631      23799999999 998


Q ss_pred             cccc----------ccCC---CCCCcceeeeccchhhHhhhhhhccccCCCc-hhhhhhcccCccchhhHHHHHHHHHHH
Q 004872          627 LDKR----------TSID---SDSSSTRAHKISGQMKQMMVKFQSLIDDDNL-EELSTALSELETLEDSQEEYMVQLETE  692 (726)
Q Consensus       627 ~~~~----------~~~~---~~~p~~k~~~~~~~~r~~l~k~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (726)
                      ++++          ..++   ..|||||+++..++.+  ++|++|+++++++ |+||++|.|.++.+++++..++-...+
T Consensus       297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~--~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d  374 (421)
T KOG1028|consen  297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKR--LSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD  374 (421)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCce--eeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence            6665          2222   3489999999999977  9999999999999 999999999999999999777633333


Q ss_pred             HHHhhhhhhhhcccccccCC
Q 004872          693 QMLLLNKIKELGQEIINSSP  712 (726)
Q Consensus       693 ~~~~~~k~~~~~~~~~~~~~  712 (726)
                      .+ .+.+++.+|+.++|...
T Consensus       375 ~d-~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  375 HD-TLGSNDLIGRCILGSDS  393 (421)
T ss_pred             cc-cccccceeeEEEecCCC
Confidence            33 35777899999999876

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.89  E-value=6.9e-23  Score=221.29  Aligned_cols=230  Identities=22%  Similarity=0.314  Sum_probs=195.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcceEE
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS  457 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~  457 (726)
                      .|.|.|.+|+||++++..|..||||.|.++ ..++||.++ +++.|.|.|.|.|.+...-..|.|.|||+|..+|+.||.
T Consensus         6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d~~~D~~IGK   85 (800)
T KOG2059|consen    6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRDLKRDDIIGK   85 (800)
T ss_pred             ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccccccccccce
Confidence            599999999999999999999999999995 569999999 999999999999998888889999999999449999999


Q ss_pred             EEEEccccccCCeeeeeeeccccc-----cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCc
Q 004872          458 ARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSD  532 (726)
Q Consensus       458 ~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~D  532 (726)
                      +.|.=++|..-+..+.||.|....     +|+|++++.+.+...            ..-++.++++++++.+.+ ++.+|
T Consensus        86 vai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~------------~~~~~c~~L~~r~~~P~~-~~~~d  152 (800)
T KOG2059|consen   86 VAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ------------SSGLVCHVLKTRQGLPII-NGQCD  152 (800)
T ss_pred             eeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC------------CCcchhhhhhhcccCcee-CCCCC
Confidence            999999998777888999998753     699999998875432            234556677777776665 45599


Q ss_pred             cEEEEEECCe----EEEeEeeeCCCCCeeeeEEEEecC------------------CCeEEEEEEE-CCCCCCCCeeEEE
Q 004872          533 PYVKVQYGDL----KKRTKVIFKTLNPQWHQTLEFPDD------------------GSPLTLHVRD-HNALLASSSIGDC  589 (726)
Q Consensus       533 Pyv~v~~~~~----~~kT~v~~~t~nP~wne~~~f~v~------------------~~~l~i~V~d-~d~~~~d~~lG~~  589 (726)
                      ||++|...+.    ..+|+++++|.+|.|+|.|+|.+.                  ...|.+++|| .+....++|+|++
T Consensus       153 p~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGev  232 (800)
T KOG2059|consen  153 PFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEV  232 (800)
T ss_pred             cceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeE
Confidence            9999999653    359999999999999999999973                  1358889998 6666679999999


Q ss_pred             EEEccccCCCCceeeEEecCC----------CCCeEEEEEEEE
Q 004872          590 VVEYQRLPPNQMADKWIPLQG----------VRKGEIHVLITR  622 (726)
Q Consensus       590 ~i~l~~l~~~~~~~~w~~L~~----------~~~G~i~l~l~~  622 (726)
                      .+++..+........||.|+.          ..-|.+++.++|
T Consensus       233 rv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y  275 (800)
T KOG2059|consen  233 RVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTY  275 (800)
T ss_pred             EeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEe
Confidence            999998876667889999963          234889999998

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.87  E-value=1.5e-21  Score=176.13  Aligned_cols=113  Identities=19%  Similarity=0.377  Sum_probs=102.4

Q ss_pred             ceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeC-CCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCe
Q 004872          509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSS  585 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~  585 (726)
                      .|.|+|+|++|++++..+ .|.+||||++.+++++.+|+++.+ +.||+|||+|.|++.  ...|.|+|||+|.+++|++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~   79 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER   79 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence            389999999999988777 789999999999999999999876 899999999999985  4689999999999999999


Q ss_pred             eEEEEEEcc-ccCCCCceeeEEecCC----CCCeEEEEEEEE
Q 004872          586 IGDCVVEYQ-RLPPNQMADKWIPLQG----VRKGEIHVLITR  622 (726)
Q Consensus       586 lG~~~i~l~-~l~~~~~~~~w~~L~~----~~~G~i~l~l~~  622 (726)
                      ||++.+++. .+..++..+.|++|.+    ...|+|+++|+|
T Consensus        80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          80 IAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            999999996 5777888899999976    456999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.85  E-value=7.7e-21  Score=168.51  Aligned_cols=109  Identities=19%  Similarity=0.310  Sum_probs=97.0

Q ss_pred             ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC----eEEEeEeeeCCCCCeee
Q 004872          483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD----LKKRTKVIFKTLNPQWH  558 (726)
Q Consensus       483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~----~~~kT~v~~~t~nP~wn  558 (726)
                      |+|.++++|.              +..+.|+|+|++|++|+   ..|.+||||++++..    .+++|+++++|+||+||
T Consensus         1 ~~l~fsL~Y~--------------~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfn   63 (118)
T cd08677           1 PKLHYSLSYD--------------KQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWE   63 (118)
T ss_pred             CeEEEEEEEc--------------CcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccc
Confidence            5788999887              67899999999999999   346699999999953    47799999999999999


Q ss_pred             eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872          559 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL  608 (726)
Q Consensus       559 e~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  608 (726)
                      |+|.|.++     ..+|.|+|||+|+++++++||++.++++++..+.....|..|
T Consensus        64 E~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          64 EELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             cEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            99999984     678999999999999999999999999998777777788765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.84  E-value=3.1e-20  Score=170.53  Aligned_cols=110  Identities=29%  Similarity=0.469  Sum_probs=99.2

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--------CCeEEEEEEECCCCCCC
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--------GSPLTLHVRDHNALLAS  583 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--------~~~l~i~V~d~d~~~~d  583 (726)
                      ++|+|++|+||+..+..|.+||||++.+++.+++|+++++++||+|||+|.|.+.        ...|.++|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            4799999999999999999999999999999999999999999999999999873        35799999999999999


Q ss_pred             CeeEEEEEEccccC--CCCceeeEEecCC------CCCeEEEEEEE
Q 004872          584 SSIGDCVVEYQRLP--PNQMADKWIPLQG------VRKGEIHVLIT  621 (726)
Q Consensus       584 ~~lG~~~i~l~~l~--~~~~~~~w~~L~~------~~~G~i~l~l~  621 (726)
                      ++||++.++|.++.  .+.....||+|.+      ..+|+|+++++
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            99999999999987  5667889999974      24599999874

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.83  E-value=5.2e-20  Score=167.55  Aligned_cols=111  Identities=30%  Similarity=0.530  Sum_probs=101.1

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  556 (726)
                      .|+|.++++|.                .+.|+|+|++|+||+..+ .|.+||||++++.+     .+++|+++++++||+
T Consensus         1 ~G~l~~~l~y~----------------~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~   63 (122)
T cd08381           1 GGQVKLSISYK----------------NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPT   63 (122)
T ss_pred             CCeEEEEEEEe----------------CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCC
Confidence            48999999987                288999999999999999 89999999999963     478999999999999


Q ss_pred             eeeEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          557 WHQTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       557 wne~~~f~v------~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      |||+|.|++      ....|.|+|||+|.++++++||++.++|.++..++....||+|.
T Consensus        64 wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~  122 (122)
T cd08381          64 FNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPLG  122 (122)
T ss_pred             cccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEECc
Confidence            999999986      35789999999999999999999999999998888889999983

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.83  E-value=4.6e-20  Score=168.79  Aligned_cols=114  Identities=29%  Similarity=0.434  Sum_probs=103.2

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccC-CCCccEEEEEECC-----eEEEeEeeeCCCCC
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD-----LKKRTKVIFKTLNP  555 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  555 (726)
                      +|+|.+++.|.              +..+.|.|+|++|+||++.+.. |.+||||++++.+     .++||+++++++||
T Consensus         1 ~G~i~~sl~y~--------------~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP   66 (125)
T cd08393           1 QGSVQFALDYD--------------PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNP   66 (125)
T ss_pred             CcEEEEEEEEE--------------CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCC
Confidence            49999999998              5568999999999999999875 8999999999942     35799999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          556 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       556 ~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      +|||+|.|++.     ...|.++|||++.++++++||++.++|.++...+....||+|+
T Consensus        67 ~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          67 VFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             ccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            99999999984     4689999999999999999999999999998888889999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.83  E-value=8.3e-20  Score=166.94  Aligned_cols=114  Identities=21%  Similarity=0.345  Sum_probs=102.9

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCccccc-CCCCccEEEEEECC-----eEEEeEeeeCCCCC
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL-RGTSDPYVKVQYGD-----LKKRTKVIFKTLNP  555 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  555 (726)
                      +|+|.+++.|.              +..+.|.|+|++|+||++.+. .|.+||||++++..     .++||+++++++||
T Consensus         1 ~G~i~~sl~y~--------------~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP   66 (125)
T cd04029           1 SGEILFSLSYD--------------YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNP   66 (125)
T ss_pred             CcEEEEEEEEE--------------CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCC
Confidence            49999999997              567999999999999998765 58999999999942     36799999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          556 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       556 ~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      +|||+|.|.+.     ...|.|+|||++.++++++||++.++|..+...+..+.|++|+
T Consensus        67 ~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          67 VYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             cccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            99999999984     4679999999999999999999999999999888899999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.82  E-value=1.9e-19  Score=166.87  Aligned_cols=119  Identities=30%  Similarity=0.478  Sum_probs=108.3

Q ss_pred             CCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCC
Q 004872          504 NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNAL  580 (726)
Q Consensus       504 ~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~  580 (726)
                      ......|.|+|+|++|++|++.+..|.+||||++.+++..++|+++++++||.|||+|.|.+.   ...|.|+|||++.+
T Consensus         9 ~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~   88 (136)
T cd08375           9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF   88 (136)
T ss_pred             cCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence            345678999999999999999999999999999999999999999999999999999999984   46799999999999


Q ss_pred             CCCCeeEEEEEEccccCC-----CCceeeEEecCCCCCeEEEEEEEE
Q 004872          581 LASSSIGDCVVEYQRLPP-----NQMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       581 ~~d~~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                      ++|++||++.+++.++..     .....+|..|.+..+|+|++++++
T Consensus        89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          89 SPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            999999999999998865     445668899999899999999987

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.82  E-value=2.8e-19  Score=162.94  Aligned_cols=112  Identities=32%  Similarity=0.551  Sum_probs=103.2

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEECC-eEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      +|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.+++||+|||+|.|.+.  ...|.|+|||++.+++|++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            5899999999999999999999999999987 5789999999999999999999974  578999999999999999999


Q ss_pred             EEEEEccccCCCCceeeEEecCCC----CCeEEEEEEEE
Q 004872          588 DCVVEYQRLPPNQMADKWIPLQGV----RKGEIHVLITR  622 (726)
Q Consensus       588 ~~~i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~l~~  622 (726)
                      ++.+++.++..+...+.|++|.+.    ..|+|+++++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~  119 (121)
T cd04042          81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTL  119 (121)
T ss_pred             EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEE
Confidence            999999999988889999999743    35999999998

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.81  E-value=4.9e-19  Score=160.13  Aligned_cols=110  Identities=33%  Similarity=0.524  Sum_probs=103.3

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEE
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGD  588 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG~  588 (726)
                      ++|+|++|++|+..+..|.+||||++++++.+.+|+++++|+||.|||+|.|.+.   ...|.|+|||++.+++|++||+
T Consensus         2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~   81 (116)
T cd08376           2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGR   81 (116)
T ss_pred             EEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEE
Confidence            7899999999999998999999999999999999999999999999999999973   4789999999999999999999


Q ss_pred             EEEEccccCCCCceeeEEecCCCCCeEEEEEEEE
Q 004872          589 CVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       589 ~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                      +.++|+++..+.....|++|.+. +|+|++.++|
T Consensus        82 ~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~  114 (116)
T cd08376          82 CEIDLSALPREQTHSLELELEDG-EGSLLLLLTL  114 (116)
T ss_pred             EEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEe
Confidence            99999999988899999999874 6999999887

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=2.7e-19  Score=162.47  Aligned_cols=107  Identities=27%  Similarity=0.435  Sum_probs=97.3

Q ss_pred             EEEEEEEeec---CcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCC-----
Q 004872          512 IELVIVEARD---LVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALL-----  581 (726)
Q Consensus       512 L~v~v~~a~~---L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~-----  581 (726)
                      |.|+|++|++   |+++|..|.+||||++.+++++.||+++++++||+|||+|.|.+.  ...|.|+|||++.++     
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~   81 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV   81 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence            7899999999   889999999999999999999999999999999999999999984  568999999999874     


Q ss_pred             -CCCeeEEEEEEccccCCCCceeeEEecCC------CCCeEEEE
Q 004872          582 -ASSSIGDCVVEYQRLPPNQMADKWIPLQG------VRKGEIHV  618 (726)
Q Consensus       582 -~d~~lG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~i~l  618 (726)
                       +|++||++.+++..+..+.....||+|..      ...|+|++
T Consensus        82 ~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          82 QPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             CCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence             89999999999999999888999999973      34577764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.81  E-value=3.8e-19  Score=162.88  Aligned_cols=114  Identities=25%  Similarity=0.388  Sum_probs=101.2

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccC-CCCccEEEEEECC-----eEEEeEeeeCCCCC
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD-----LKKRTKVIFKTLNP  555 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  555 (726)
                      .|+|.+++.|.              +..+.|.|+|++|+||++.+.. |.+||||++++..     .++||+++++++||
T Consensus         1 ~G~i~~sl~Y~--------------~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nP   66 (128)
T cd08392           1 TGEIEFALHYN--------------FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNP   66 (128)
T ss_pred             CcEEEEEEEEe--------------CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCC
Confidence            38999999998              5669999999999999999875 9999999999952     36799999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCC---CCceeeEEecC
Q 004872          556 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP---NQMADKWIPLQ  609 (726)
Q Consensus       556 ~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~---~~~~~~w~~L~  609 (726)
                      +|||+|.|++.     ...|.+.|||++.++++++||++.|+|.++..   +.....||+|.
T Consensus        67 vfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          67 VFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             ccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            99999999984     46899999999999999999999999998854   34678999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.81  E-value=3.6e-19  Score=165.44  Aligned_cols=119  Identities=28%  Similarity=0.396  Sum_probs=103.9

Q ss_pred             ccccccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccc-cCCCCccEEEEEECC-----eEEEeEeee
Q 004872          477 LEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD-----LKKRTKVIF  550 (726)
Q Consensus       477 L~~~~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~v~~  550 (726)
                      +.....|+|.+++.|.                .+.|.|+|++|+||++.+ ..|.+||||++++..     .++||++++
T Consensus        12 ~~~~~~G~l~lsl~y~----------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~k   75 (146)
T cd04028          12 LASPSMGDIQLGLYDK----------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR   75 (146)
T ss_pred             ccCCCcceEEEEEEeC----------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecC
Confidence            3444579999999873                288999999999999864 578999999999943     377999999


Q ss_pred             CCCCCeeeeEEEEec--CCCeEEEEEE-ECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872          551 KTLNPQWHQTLEFPD--DGSPLTLHVR-DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  611 (726)
Q Consensus       551 ~t~nP~wne~~~f~v--~~~~l~i~V~-d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  611 (726)
                      +|+||+|||+|.|.+  .+..|.|+|| |++.++++++||++.|+|+++..+.....||+|...
T Consensus        76 ktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028          76 KTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            999999999999998  4778999999 688888999999999999999888888999999753

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.81  E-value=2.4e-19  Score=194.13  Aligned_cols=238  Identities=18%  Similarity=0.248  Sum_probs=181.7

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc--cEEeeeecCCCCCCcccceeEEEEe
Q 004872          186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--ELTRRTDARPGSDPRWDSMFNMVLH  263 (726)
Q Consensus       186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g--~~~rTt~i~~t~nP~WnEtf~~~v~  263 (726)
                      --|+|+|.+|+||++.+..|++                      ||||.|.+.  ++.||.++.+++.|-|.|.|+|.+.
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~----------------------D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP   62 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMR----------------------DCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIP   62 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCc----------------------CcceEEeecchhhhhhhhhhhhcCCccccceEEecC
Confidence            3589999999999999877766                      999999995  6799999999999999999999997


Q ss_pred             cCCceEEEEEEEeCCCCCCcceeEEEEEeceeccCCCcceeecCCCCccccccccccCceeeeeeecCCccccEEEEEEE
Q 004872          264 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNSGELTVRLV  343 (726)
Q Consensus       264 ~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~l~~~l~  343 (726)
                      -....|.|.|||.| . .+|+.||.+.|.-.+|...+.           .+.|+.+.-      +-......|++++++.
T Consensus        63 ~~F~~l~fYv~D~d-~-~~D~~IGKvai~re~l~~~~~-----------~d~W~~L~~------VD~dsEVQG~v~l~l~  123 (800)
T KOG2059|consen   63 RTFRYLSFYVWDRD-L-KRDDIIGKVAIKREDLHMYPG-----------KDTWFSLQP------VDPDSEVQGKVHLELA  123 (800)
T ss_pred             cceeeEEEEEeccc-c-ccccccceeeeeHHHHhhCCC-----------Cccceeccc------cCCChhhceeEEEEEE
Confidence            77899999999999 4 799999999999998886543           223322110      0011123689888875


Q ss_pred             eeeeecCCCCCCCCCccCCCCcccccCCccccCCccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eEeecccc-
Q 004872          344 LKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK----IVQRTRTA-  418 (726)
Q Consensus       344 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~----~~~kT~~~-  418 (726)
                      +-+..-+                          .  -+...+.+++++.+.. ++.+||||++...+    +..+|+++ 
T Consensus       124 ~~e~~~~--------------------------~--~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~k  174 (800)
T KOG2059|consen  124 LTEAIQS--------------------------S--GLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKK  174 (800)
T ss_pred             eccccCC--------------------------C--cchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceee
Confidence            4321110                          1  2455556666776655 46699999999943    34699999 


Q ss_pred             CCCCCceeeEEEEEeeCC----------------ceeEEEEEEeecC-C-CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872          419 HSPNHVWNQKFELDEIGG----------------GECLMVKCYNEEI-F-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  480 (726)
Q Consensus       419 ~t~nP~wne~f~f~v~~~----------------~~~l~i~V~d~~~-~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  480 (726)
                      ++.+|.|+|.|.|.+...                ...|.+.+|++.. . ++.|+|++.+++..+........||.|.+.
T Consensus       175 kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~  254 (800)
T KOG2059|consen  175 KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPR  254 (800)
T ss_pred             eccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecC
Confidence            999999999999986543                3468899998544 3 799999999999998866677899999763


Q ss_pred             c----------cceeEEEEEEEE
Q 004872          481 N----------TGELRLQIEATR  493 (726)
Q Consensus       481 ~----------~G~I~l~~~~~~  493 (726)
                      .          -|.+++.+.|..
T Consensus       255 ~~g~~~~~~~~lGslrl~v~y~~  277 (800)
T KOG2059|consen  255 PNGEKSSDGGDLGSLRLNVTYTE  277 (800)
T ss_pred             CCcccCCCCCCccceeeeEEeee
Confidence            2          388999998874

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.81  E-value=3.8e-19  Score=160.47  Aligned_cols=112  Identities=23%  Similarity=0.438  Sum_probs=100.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-C-CCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcce
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM  455 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~-t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~i  455 (726)
                      |.|.|+|++|++++..+ .|.+||||++.++++++||+++ + +.||+|||+|.|.+.+....|.|+|||++.+ +|++|
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i   80 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI   80 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence            48999999999988776 7999999999999999999998 4 7999999999999877667899999999998 78999


Q ss_pred             EEEEEEcc-ccccCCeeeeeeeccc----cccceeEEEEEE
Q 004872          456 GSARVNLE-GLVEGSVRDIWVPLEK----VNTGELRLQIEA  491 (726)
Q Consensus       456 G~~~i~L~-~l~~~~~~~~w~~L~~----~~~G~I~l~~~~  491 (726)
                      |.+.+++. .+..+...+.||+|.+    ...|+|+|+++|
T Consensus        81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            99999996 5667777899999987    346999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=4.1e-19  Score=163.28  Aligned_cols=112  Identities=27%  Similarity=0.397  Sum_probs=101.3

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecCC------CeEEEEEEECCCCC-CC
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDG------SPLTLHVRDHNALL-AS  583 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~~------~~l~i~V~d~d~~~-~d  583 (726)
                      .|+|+|++|++|++.+..|.+||||++++++++++|+++.+++||+|||.|.|.+..      ..|.|+|||++.++ +|
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            489999999999999988999999999999999999999999999999999999852      46999999999886 89


Q ss_pred             CeeEEEEEEccccC-CCCceeeEEecCCC-----CCeEEEEEEEE
Q 004872          584 SSIGDCVVEYQRLP-PNQMADKWIPLQGV-----RKGEIHVLITR  622 (726)
Q Consensus       584 ~~lG~~~i~l~~l~-~~~~~~~w~~L~~~-----~~G~i~l~l~~  622 (726)
                      ++||++.++++++. .+.....||+|+..     .+|+|++++.+
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  125 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI  125 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence            99999999999997 56778899999743     57999999976

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.80  E-value=6.8e-19  Score=161.17  Aligned_cols=114  Identities=27%  Similarity=0.467  Sum_probs=104.5

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC---CeEEEeEeeeCCCCCeee
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH  558 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn  558 (726)
                      .|+|++++.|.              +..+.|.|+|++|+||++.+..|.+||||++++.   ...++|+++++++||+||
T Consensus         2 ~G~l~~sl~y~--------------~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wn   67 (124)
T cd08387           2 RGELHFSLEYD--------------KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD   67 (124)
T ss_pred             CCEEEEEEEEC--------------CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcc
Confidence            59999999987              5669999999999999999999999999999994   346899999999999999


Q ss_pred             eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          559 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       559 e~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      |+|.|.+.     ...|.|+|||++.++++++||++.++++++..+...+.|++|+
T Consensus        68 e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          68 ESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             cEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            99999974     4589999999999999999999999999998888899999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.80  E-value=3.5e-19  Score=161.58  Aligned_cols=112  Identities=27%  Similarity=0.415  Sum_probs=100.8

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeC-CCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS  585 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~  585 (726)
                      |.|+|+|++|++|+..+..+.+||||++++++.+++|+++.+ ++||+|||.|.|.+.   ...|.|+|||++..+ |++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            689999999999999999999999999999999999998865 799999999999985   467999999999876 899


Q ss_pred             eEEEEEEccccCCCCceeeEEecCC--CCCeEEEEEEEE
Q 004872          586 IGDCVVEYQRLPPNQMADKWIPLQG--VRKGEIHVLITR  622 (726)
Q Consensus       586 lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~i~l~l~~  622 (726)
                      ||++.+++.++..+.....|++|..  ...|+|+++++|
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence            9999999999877767899999975  356999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.80  E-value=8.2e-19  Score=159.36  Aligned_cols=110  Identities=26%  Similarity=0.396  Sum_probs=101.8

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEECC---eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS  585 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~  585 (726)
                      |+|+|++|++|+..+..+.+||||++++++   .+++|++++++.||+|||+|.|.+.   ...|.|+|||+|.+ +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            789999999999998889999999999963   5789999999999999999999984   45699999999998 8999


Q ss_pred             eEEEEEEccccCCCCceeeEEecCCCCCeEEEEEEEE
Q 004872          586 IGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       586 lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                      ||++.+++.++..+.....|++|....+|+|++++.+
T Consensus        81 iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          81 LGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             cEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence            9999999999999999999999999889999999987

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.79  E-value=1.4e-18  Score=157.94  Aligned_cols=111  Identities=26%  Similarity=0.366  Sum_probs=99.3

Q ss_pred             EEEEEEEeecCcccc-cCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 004872          512 IELVIVEARDLVAAD-LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       512 L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      |+|.|++|+||++.+ ..|.+||||+|.++++ .++|+++++|+||+|||+|.|.+.  ...|.|.|||++.+++|++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            679999999999874 4678999999999775 679999999999999999999995  378999999999999999999


Q ss_pred             EEEEEccccCCCCceeeEEecCCC-----CCeEEEEEEEE
Q 004872          588 DCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR  622 (726)
Q Consensus       588 ~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~~  622 (726)
                      .+.++++++..+...+.|++|+..     .+|+|++++.|
T Consensus        82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            999999999888888999999742     37999999864

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=1.2e-18  Score=163.88  Aligned_cols=112  Identities=24%  Similarity=0.445  Sum_probs=100.3

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeC-CCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCee
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSI  586 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~l  586 (726)
                      .|+|+|++|++|++.+..|.+||||++.+++++.+|+++.+ ++||+|||+|.|.+.   ...|.|+|+|++..++|++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            37999999999999999999999999999999999999977 699999999999984   46899999999998899999


Q ss_pred             EEEEEEccccCCC----CceeeEEecCCC-----------CCeEEEEEEEE
Q 004872          587 GDCVVEYQRLPPN----QMADKWIPLQGV-----------RKGEIHVLITR  622 (726)
Q Consensus       587 G~~~i~l~~l~~~----~~~~~w~~L~~~-----------~~G~i~l~l~~  622 (726)
                      |++.++|+++..+    ...++||+|.+.           .+|+|++.++|
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~  131 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCL  131 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEe
Confidence            9999999998643    457899999753           24999999999

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.79  E-value=2e-18  Score=158.08  Aligned_cols=114  Identities=32%  Similarity=0.459  Sum_probs=104.0

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC---eEEEeEeeeCCCCCeee
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWH  558 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wn  558 (726)
                      .|+|.++++|.              ...+.|+|+|++|+||+..+..|.+||||++++.+   .+++|+++++++||+||
T Consensus         2 ~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wn   67 (124)
T cd08385           2 LGKLQFSLDYD--------------FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN   67 (124)
T ss_pred             ccEEEEEEEEe--------------CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCcee
Confidence            58999999988              56689999999999999999899999999999853   46799999999999999


Q ss_pred             eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          559 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       559 e~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      |+|.|.+.     ...|.|+|||++.++++++||++.++++++..+...+.|++|.
T Consensus        68 e~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          68 ETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             eeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            99999974     4689999999999999999999999999998888899999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.79  E-value=2.7e-18  Score=157.67  Aligned_cols=114  Identities=30%  Similarity=0.324  Sum_probs=100.8

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccC-CCCccEEEEEEC---CeEEEeEeeeCCCCCee
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYG---DLKKRTKVIFKTLNPQW  557 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~v~~~t~nP~w  557 (726)
                      .|+|.+++.|.              ...+.|+|+|++|+||+..+.. |.+||||++.+.   .++.||+++++++||+|
T Consensus         2 ~G~l~~~l~y~--------------~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~w   67 (128)
T cd08388           2 LGTLFFSLRYN--------------SEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVY   67 (128)
T ss_pred             CeEEEEEEEEE--------------CCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCce
Confidence            59999999988              5678999999999999998876 899999999995   34679999999999999


Q ss_pred             eeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCC--CceeeEEecC
Q 004872          558 HQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN--QMADKWIPLQ  609 (726)
Q Consensus       558 ne~~~f~-v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~  609 (726)
                      ||+|.|. ++     ...|.++|||+|.+++|++||++.++|.++...  .+...|++|+
T Consensus        68 nE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          68 DETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             eeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence            9999994 42     457999999999999999999999999999644  6788999886

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.79  E-value=1.4e-18  Score=158.39  Aligned_cols=112  Identities=32%  Similarity=0.626  Sum_probs=102.5

Q ss_pred             eEEEEEEEEeecCccccc------CCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCC
Q 004872          510 GWIELVIVEARDLVAADL------RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNAL  580 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~------~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~  580 (726)
                      |.|+|+|++|+||+..+.      .|.+||||++++++..++|++++++.||+|||+|.|.+.   ...|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            679999999999998874      378999999999999999999999999999999999974   57899999999988


Q ss_pred             CCCCeeEEEEEEccccCCCCceeeEEecCCCCCeEEEEEEEE
Q 004872          581 LASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       581 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                       +|++||++.+++.++..+...+.|++|.+...|+|++++++
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence             89999999999999987777899999998889999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.78  E-value=2.2e-18  Score=157.40  Aligned_cols=114  Identities=21%  Similarity=0.320  Sum_probs=103.1

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC---eEEEeEeeeCCCCCeee
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWH  558 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wn  558 (726)
                      .|+|.+++.|.              +..+.|.|+|++|+||++.+..|.+||||++.+..   ++++|+++++ +||+||
T Consensus         2 ~G~l~~sl~Y~--------------~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fn   66 (124)
T cd08389           2 CGDLDVAFEYD--------------PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFN   66 (124)
T ss_pred             CEEEEEEEEEC--------------CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCccc
Confidence            59999999988              66789999999999999999999999999988733   5789999888 999999


Q ss_pred             eEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872          559 QTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  610 (726)
Q Consensus       559 e~~~f~-v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  610 (726)
                      |+|.|+ +.     ...|.++|||++.++++++||++.|+|+++..+.....|++|++
T Consensus        67 E~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          67 ETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             CEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            999998 53     57899999999999999999999999999988889999999973

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.78  E-value=3.1e-18  Score=157.05  Aligned_cols=114  Identities=29%  Similarity=0.457  Sum_probs=103.6

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC---CeEEEeEeeeCCCCCeee
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH  558 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn  558 (726)
                      .|+|+++++|.              +..+.|+|+|++|+||+..+..+.+||||++.+.   ..+.+|+++++++||.||
T Consensus         2 ~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wn   67 (125)
T cd08386           2 LGRIQFSVSYD--------------FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN   67 (125)
T ss_pred             ccEEEEEEEEC--------------CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccc
Confidence            59999999987              5668999999999999999989999999999993   457899999999999999


Q ss_pred             eEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          559 QTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       559 e~~~f~v------~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      |+|.|.+      ....|.++|||++.++++++||++.+++.++..+...+.|++|.
T Consensus        68 e~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          68 ETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             eeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            9999974      24579999999999999999999999999999888899999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.78  E-value=2e-18  Score=158.98  Aligned_cols=113  Identities=33%  Similarity=0.559  Sum_probs=102.1

Q ss_pred             eEEEEEEEEeecCccccc--CCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCC
Q 004872          510 GWIELVIVEARDLVAADL--RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASS  584 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~--~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~  584 (726)
                      |.|+|+|++|++|+..+.  .+.+||||++.+++.+.+|+++++++||.|||+|.|++.   ...|.|+|||++..++++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            689999999999999988  899999999999999999999999999999999999984   678999999999998999


Q ss_pred             eeEEEEEEccccC---CCCceeeEEecCCC-------CCeEEEEEEEE
Q 004872          585 SIGDCVVEYQRLP---PNQMADKWIPLQGV-------RKGEIHVLITR  622 (726)
Q Consensus       585 ~lG~~~i~l~~l~---~~~~~~~w~~L~~~-------~~G~i~l~l~~  622 (726)
                      +||++.+++.++.   .......|++|.+.       ..|+|++++++
T Consensus        81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            9999999999986   33456899999864       47999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.78  E-value=1.8e-18  Score=156.99  Aligned_cols=111  Identities=19%  Similarity=0.323  Sum_probs=98.7

Q ss_pred             eeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC------eEEEeEeeeCCCCCee
Q 004872          484 ELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQW  557 (726)
Q Consensus       484 ~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~w  557 (726)
                      +|.+++.|.              +..+.|.|+|++|+||++.+..|.+||||++++..      .++||+++++++||+|
T Consensus         2 ~i~~sL~Y~--------------~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvf   67 (124)
T cd08680           2 QVQIGLRYD--------------SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVF   67 (124)
T ss_pred             eEEEEEEEC--------------CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCcc
Confidence            577888876              67799999999999999998889999999999832      3789999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCC-CceeeEEec
Q 004872          558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPL  608 (726)
Q Consensus       558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L  608 (726)
                      ||+|.|+++     +..|.++|||++.++++++||++.|+|.+++.. .....||+|
T Consensus        68 nE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          68 NEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             ccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            999999984     579999999999999999999999999999654 357889976

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.78  E-value=3.4e-18  Score=158.76  Aligned_cols=115  Identities=29%  Similarity=0.460  Sum_probs=99.8

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC------------CCeEEEEEEEC
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD------------GSPLTLHVRDH  577 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~------------~~~l~i~V~d~  577 (726)
                      .+|+|+|++|++|+..|..|.+||||+|++++.+++|+++++|+||.|||+|.|.+.            ...|.++|||+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            378999999999999999999999999999999999999999999999999999741            25699999999


Q ss_pred             CCCCCCCeeEEEEE-EccccC---CCCceeeEEecC--CCCCeEEEEEEEEEec
Q 004872          578 NALLASSSIGDCVV-EYQRLP---PNQMADKWIPLQ--GVRKGEIHVLITRKVP  625 (726)
Q Consensus       578 d~~~~d~~lG~~~i-~l~~l~---~~~~~~~w~~L~--~~~~G~i~l~l~~~~p  625 (726)
                      |..++|++||++.+ ++..+.   ......+|++|.  +...|+|++++++ ++
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~-~~  133 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFEL-IE  133 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEE-EE
Confidence            99999999999987 444443   346788999997  3456999999998 54

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.78  E-value=2.7e-18  Score=157.43  Aligned_cols=113  Identities=31%  Similarity=0.482  Sum_probs=99.5

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  556 (726)
                      .|+|.+++.|.              +..+.|+|+|++|++|+..+..+.+||||++++.+     .+++|+++++++||+
T Consensus         2 ~G~l~~~l~~~--------------~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~   67 (125)
T cd04031           2 TGRIQIQLWYD--------------KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPE   67 (125)
T ss_pred             cEEEEEEEEEe--------------CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCc
Confidence            48999999988              56689999999999999999889999999999964     577999999999999


Q ss_pred             eeeEEEEec-C-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          557 WHQTLEFPD-D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       557 wne~~~f~v-~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      |||+|.|.+ .     ...|.|+|||++.++++++||++.++|.+.. ......||+|+
T Consensus        68 wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~  125 (125)
T cd04031          68 WNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ  125 (125)
T ss_pred             cccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence            999999985 2     4689999999999999999999999999843 33456899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.78  E-value=7.9e-19  Score=161.21  Aligned_cols=94  Identities=29%  Similarity=0.597  Sum_probs=88.3

Q ss_pred             CceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCe
Q 004872          508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSS  585 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~  585 (726)
                      ..|.|+|+|.+|.||..+|..+++||||.+.+++++.||+++++++||+|||.|+|.+.  ...|.++|||+|.++.||+
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~   83 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDF   83 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccc
Confidence            46999999999999999999899999999999999999999999999999999999985  6889999999999999999


Q ss_pred             eEEEEEEccccCCCCc
Q 004872          586 IGDCVVEYQRLPPNQM  601 (726)
Q Consensus       586 lG~~~i~l~~l~~~~~  601 (726)
                      ||.+.|+|..+.....
T Consensus        84 mG~A~I~l~p~~~~~~   99 (168)
T KOG1030|consen   84 MGEATIPLKPLLEAQK   99 (168)
T ss_pred             cceeeeccHHHHHHhh
Confidence            9999999998876543

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.78  E-value=3.2e-18  Score=158.02  Aligned_cols=100  Identities=27%  Similarity=0.385  Sum_probs=89.3

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCccccc--CCCCccEEEEEECC-----eEEEeEeeeCCCC
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL--RGTSDPYVKVQYGD-----LKKRTKVIFKTLN  554 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~v~~~t~n  554 (726)
                      .|+|.++++|.              +..+.|.|.|++|+||+..+.  .+.+||||+|++..     .++||+++++++|
T Consensus         1 ~Gel~~sL~Y~--------------~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~n   66 (138)
T cd08407           1 TGEVLLSISYL--------------PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKIN   66 (138)
T ss_pred             CCEEEEEEEEe--------------CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCC
Confidence            48999999998              667999999999999999883  35599999999954     2569999999999


Q ss_pred             CeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccc
Q 004872          555 PQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQR  595 (726)
Q Consensus       555 P~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~  595 (726)
                      |+|||+|.|.++     ...|.|+|||+|.++++++||++.+++..
T Consensus        67 PvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          67 PVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             CccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence            999999999985     57899999999999999999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.78  E-value=1.8e-18  Score=155.62  Aligned_cols=99  Identities=23%  Similarity=0.331  Sum_probs=88.2

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEEC-----C--eEEEeEeeeCCCCCeeeeEEEEecCC------CeEEEEEEEC
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYG-----D--LKKRTKVIFKTLNPQWHQTLEFPDDG------SPLTLHVRDH  577 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~--~~~kT~v~~~t~nP~wne~~~f~v~~------~~l~i~V~d~  577 (726)
                      .|+|+|++|++|+..+ .|.+||||+|++.     .  ++++|+++.+|+||+|||+|.|.+..      ..|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            4899999999999887 4999999999983     2  35689999999999999999999852      3599999999


Q ss_pred             CCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872          578 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  610 (726)
Q Consensus       578 d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  610 (726)
                      |..++|++||++.+++.++..++....|++|+.
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~  112 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR  112 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence            988889999999999999999888999999974

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.77  E-value=5.2e-18  Score=156.00  Aligned_cols=114  Identities=23%  Similarity=0.433  Sum_probs=103.4

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-----CeEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~  556 (726)
                      .|+|.+++.|.              +..+.|+|+|++|+||+..+..+.+||||++.+.     ..+++|++++++.||+
T Consensus         2 ~G~l~~~l~y~--------------~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~   67 (127)
T cd04030           2 LGRIQLTIRYS--------------SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPV   67 (127)
T ss_pred             CeEEEEEEEEe--------------CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCE
Confidence            58999999988              5669999999999999999998999999999995     3578999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCC--CCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          557 WHQTLEFPDD-----GSPLTLHVRDHNAL--LASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       557 wne~~~f~v~-----~~~l~i~V~d~d~~--~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      |||+|.|.+.     ...|.+.|||++.+  +++++||++.++|.++..+.....||+|+
T Consensus        68 wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          68 FDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             ECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            9999999984     46899999999986  68999999999999998888889999984

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.77  E-value=3.1e-18  Score=154.96  Aligned_cols=109  Identities=25%  Similarity=0.433  Sum_probs=96.0

Q ss_pred             ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee
Q 004872          483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW  557 (726)
Q Consensus       483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w  557 (726)
                      |+|+++++|.                .+.|.|+|++|+||++.+ .|.+||||++++..     .++||+++++++||+|
T Consensus         1 G~l~l~~~~~----------------~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~   63 (119)
T cd08685           1 GQLKLSIEGQ----------------NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLF   63 (119)
T ss_pred             CEEEEEEEEc----------------CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCcc
Confidence            7888888763                388999999999999998 88999999999954     3669999999999999


Q ss_pred             eeEEEEecC----CCeEEEEEEECCCCC-CCCeeEEEEEEccccCCCCceeeEEec
Q 004872          558 HQTLEFPDD----GSPLTLHVRDHNALL-ASSSIGDCVVEYQRLPPNQMADKWIPL  608 (726)
Q Consensus       558 ne~~~f~v~----~~~l~i~V~d~d~~~-~d~~lG~~~i~l~~l~~~~~~~~w~~L  608 (726)
                      ||+|.|.+.    ...|.++|||++..+ ++++||++.+++.++..+...+.||.|
T Consensus        64 nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          64 HETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             ccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            999999984    357999999999876 478999999999999888788999986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.77  E-value=4.8e-18  Score=155.30  Aligned_cols=112  Identities=29%  Similarity=0.457  Sum_probs=101.3

Q ss_pred             ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccc-cCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872          483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  556 (726)
                      |+|.++++|.              ...+.|.|+|++|+||+..+ ..+.+||||++++.+     .+.+|+++++++||+
T Consensus         1 G~i~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~   66 (123)
T cd08521           1 GEIEFSLSYN--------------YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPV   66 (123)
T ss_pred             CeEEEEEEEe--------------CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCc
Confidence            8899999987              56699999999999999988 788999999999842     467999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872          557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL  608 (726)
Q Consensus       557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  608 (726)
                      |||+|.|.+.     ...|.|+|||++.++++++||++.++|+++..+...+.||+|
T Consensus        67 wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          67 FNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             ccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            9999999974     458999999999999999999999999999877788999987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.77  E-value=8.2e-18  Score=154.34  Aligned_cols=109  Identities=25%  Similarity=0.367  Sum_probs=99.0

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEECC--eEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      |.|+|++|+||+.  ..|.+||||+++++.  ++++|+++++++||+|||.|.|.+.  ...|.|+|||++..++|++||
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG   78 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG   78 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence            5799999999988  678999999999974  5789999999999999999999985  578999999999999999999


Q ss_pred             EEEEEccccCCCCceeeEEecCCC------CCeEEEEEEEE
Q 004872          588 DCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITR  622 (726)
Q Consensus       588 ~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~  622 (726)
                      ++.+++..+..+.....|++|.+.      ..|+|.+++.|
T Consensus        79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~  119 (126)
T cd08678          79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLF  119 (126)
T ss_pred             EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEE
Confidence            999999999887778899999743      47999999999

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.77  E-value=4.8e-18  Score=157.02  Aligned_cols=99  Identities=25%  Similarity=0.362  Sum_probs=89.7

Q ss_pred             ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee
Q 004872          483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW  557 (726)
Q Consensus       483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w  557 (726)
                      |+|.++++|.              +..+.|.|+|++|+||+..+..|.+||||++++..     .++||+++++++||+|
T Consensus         2 G~i~~sL~Y~--------------~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~   67 (136)
T cd08406           2 GEILLSLSYL--------------PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIF   67 (136)
T ss_pred             cEEEEEEEEc--------------CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCee
Confidence            8999999988              56689999999999999999999999999999932     2668999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccc
Q 004872          558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQR  595 (726)
Q Consensus       558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~  595 (726)
                      ||+|.|.++     ...|.|+|||+|.++++++||++.++...
T Consensus        68 nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          68 NEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             ceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence            999999984     57899999999999999999999998653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.76  E-value=1.4e-17  Score=152.67  Aligned_cols=110  Identities=24%  Similarity=0.426  Sum_probs=96.3

Q ss_pred             ceEEEEEEEEeecCcccccCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecCC---CeEEEEEEECCCCCCCC
Q 004872          509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLHVRDHNALLASS  584 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~~---~~l~i~V~d~d~~~~d~  584 (726)
                      ...|+|+|++|+||+..   +.+||||+|.+++. ..+|++. +++||.|||+|.|.+..   ..+.|.|||++..++|+
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~   78 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS   78 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence            35799999999999874   47899999999875 4688874 68999999999998632   57999999999999999


Q ss_pred             eeEEEEEEccccCCCCceeeEEecCCC------CCeEEEEEEEE
Q 004872          585 SIGDCVVEYQRLPPNQMADKWIPLQGV------RKGEIHVLITR  622 (726)
Q Consensus       585 ~lG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~i~l~l~~  622 (726)
                      +||++.++|..+..+...+.|++|.+.      ..|+|+++++|
T Consensus        79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~  122 (126)
T cd08400          79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARY  122 (126)
T ss_pred             eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEE
Confidence            999999999999988888999999753      34999999999

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.76  E-value=9.4e-18  Score=153.37  Aligned_cols=110  Identities=30%  Similarity=0.518  Sum_probs=99.0

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      +|+|+|++|++|+..+..+.+||||++++++.+.+|+++++++||.|||+|.|.+.   ...|.|+|||++.++++++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            48999999999999998899999999999999999999999999999999999985   367999999999999999999


Q ss_pred             EEEEEccccCCCCceeeEEecCC---------CCCeEEEEEE
Q 004872          588 DCVVEYQRLPPNQMADKWIPLQG---------VRKGEIHVLI  620 (726)
Q Consensus       588 ~~~i~l~~l~~~~~~~~w~~L~~---------~~~G~i~l~l  620 (726)
                      ++.+++.++..+.....|+.|..         ...|.|++.+
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          81 KVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             EEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            99999999987777789999963         2358888765

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.76  E-value=8.8e-18  Score=155.82  Aligned_cols=112  Identities=30%  Similarity=0.443  Sum_probs=99.0

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEECCe-------EEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCC
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALL  581 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~  581 (726)
                      .|+|+|++|++|+..+..|.+||||++++++.       +++|+++++|+||.|||+|.|.+.  ...|.++|||++.++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            37999999999999998899999999999654       579999999999999999999984  567999999999999


Q ss_pred             CCCeeEEEEEEccccCCCC------ceeeEEecCC-----CCCeEEEEEEEE
Q 004872          582 ASSSIGDCVVEYQRLPPNQ------MADKWIPLQG-----VRKGEIHVLITR  622 (726)
Q Consensus       582 ~d~~lG~~~i~l~~l~~~~------~~~~w~~L~~-----~~~G~i~l~l~~  622 (726)
                      +|++||++.+++.++..+.      ....||+|++     ...|+|++++.|
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence            9999999999999987543      3569999974     347999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.76  E-value=1.7e-17  Score=151.72  Aligned_cols=113  Identities=24%  Similarity=0.317  Sum_probs=102.5

Q ss_pred             ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccc-cCCCCccEEEEEEC---CeEEEeEeeeCCCCCeee
Q 004872          483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWH  558 (726)
Q Consensus       483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wn  558 (726)
                      |+|.+++.|.              +..+.|.|+|++|+||+..+ ..+.+||||++++.   ....+|+++++++||+||
T Consensus         1 G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wn   66 (123)
T cd08390           1 GRLWFSVQYD--------------LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFD   66 (123)
T ss_pred             CEEEEEEEEC--------------CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccc
Confidence            8899999987              56689999999999999998 68899999999984   356799999999999999


Q ss_pred             eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          559 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       559 e~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      |+|.|.+.     ...|.|+|||++..+++++||++.++|+++........|++|+
T Consensus        67 e~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          67 ETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             eEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            99999985     3589999999999989999999999999998888889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.75  E-value=9.9e-18  Score=159.99  Aligned_cols=127  Identities=25%  Similarity=0.398  Sum_probs=107.2

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-----CeEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~  556 (726)
                      .|+|.++++|.+.......  .......|.|+|+|++|+||+..+..|.+||||++++.     ..+++|+++++++||.
T Consensus         1 ~G~l~~~l~y~~~~~~~~~--~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~   78 (162)
T cd04020           1 RGELKVALKYVPPESEGAL--KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPV   78 (162)
T ss_pred             CceEEEEEEecCccccccc--cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCC
Confidence            4899999999965432111  12335679999999999999999989999999999983     3578999999999999


Q ss_pred             eeeEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872          557 WHQTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  610 (726)
Q Consensus       557 wne~~~f~v------~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  610 (726)
                      |||+|.|.+      ....|.|+|||++.+++|++||++.+++..+......+.|++|.+
T Consensus        79 WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020          79 WNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             CCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            999999984      235799999999999999999999999999987777889999875

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.75  E-value=2e-17  Score=150.33  Aligned_cols=111  Identities=27%  Similarity=0.540  Sum_probs=100.7

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      |.|+|+|++|++|+..+..+.+||||++++++...+|++++++.||.|||+|.|++.  ...+.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            689999999999999999999999999999998999999999999999999999984  578999999999988999999


Q ss_pred             EEEEEccccCCCCceeeEEecCC-----CCCeEEEEEEEE
Q 004872          588 DCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITR  622 (726)
Q Consensus       588 ~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l~~  622 (726)
                      ++.+++.++..+.  ..|++|..     ..+|+|++++++
T Consensus        81 ~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          81 KVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             EEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence            9999999987653  58999964     247999999986

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.75  E-value=2.5e-17  Score=156.65  Aligned_cols=113  Identities=26%  Similarity=0.451  Sum_probs=99.9

Q ss_pred             ceEEEEEEEEeecCcccc------------------------------cCCCCccEEEEEECCeE-EEeEeeeCCCCCee
Q 004872          509 NGWIELVIVEARDLVAAD------------------------------LRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQW  557 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d------------------------------~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~w  557 (726)
                      .|.|.|+|++|++|+++|                              ..|.+||||+|++++.+ .+|++++++.||+|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            489999999999999887                              35778999999998865 69999999999999


Q ss_pred             eeEEEEecC--CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC------CCCeEEEEEEEE
Q 004872          558 HQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG------VRKGEIHVLITR  622 (726)
Q Consensus       558 ne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~------~~~G~i~l~l~~  622 (726)
                      ||+|.|.+.  ...|.|+|||+|.++ +++||++.++++++..+...+.|++|.+      ...|+|+++++|
T Consensus        86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence            999999974  568999999999875 6899999999999988888999999964      235899999987

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.75  E-value=7.9e-18  Score=154.51  Aligned_cols=110  Identities=28%  Similarity=0.510  Sum_probs=97.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC------CceeEEEEEEeecCC-CC
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG------GGECLMVKCYNEEIF-GD  452 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~------~~~~l~i~V~d~~~~-~d  452 (726)
                      ++|+|++|+||..++..|.+||||++++++..+||+++ ++.||+|||.|.|.+..      ....|.|.|||++.. +|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            47999999999999989999999999999999999999 99999999999999866      367899999999987 79


Q ss_pred             cceEEEEEEccccc--cCCeeeeeeecccc------ccceeEEEEE
Q 004872          453 ENMGSARVNLEGLV--EGSVRDIWVPLEKV------NTGELRLQIE  490 (726)
Q Consensus       453 ~~iG~~~i~L~~l~--~~~~~~~w~~L~~~------~~G~I~l~~~  490 (726)
                      ++||++.++|+++.  .+.....||+|.+.      ..|+|+++++
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            99999999999987  45567899999752      3588888763

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.75  E-value=1.3e-17  Score=151.62  Aligned_cols=107  Identities=31%  Similarity=0.565  Sum_probs=94.8

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      .|.|+|++|+||+..    .+||||++.+++.+.+|+++++++||+|||+|.|.+.   ...|.++|||++.. ++++||
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG   75 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG   75 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence            378999999999887    7899999999999999999999999999999999984   57899999999987 789999


Q ss_pred             EEEEEccccCCCC-----ceeeEEecCCC----CCeEEEEEEEE
Q 004872          588 DCVVEYQRLPPNQ-----MADKWIPLQGV----RKGEIHVLITR  622 (726)
Q Consensus       588 ~~~i~l~~l~~~~-----~~~~w~~L~~~----~~G~i~l~l~~  622 (726)
                      ++.++++++..+.     ...+||+|.+.    .+|+|++++.|
T Consensus        76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            9999999986532     35799999764    35999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.75  E-value=1.5e-17  Score=151.01  Aligned_cols=100  Identities=27%  Similarity=0.394  Sum_probs=93.3

Q ss_pred             EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-----
Q 004872          380 KINVTVVEGKD---LMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-----  450 (726)
Q Consensus       380 ~L~V~V~~a~~---L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-----  450 (726)
                      .|.|+|++|++   |..+|..|.+||||++.++++.+||+++ ++.||+|||+|.|.+.+....|.|+|||++..     
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            38999999999   8888999999999999999999999999 99999999999999887777999999999875     


Q ss_pred             --CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872          451 --GDENMGSARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       451 --~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                        +|++||++.+++.++..+.....||+|..
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS  111 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence              79999999999999998888899999985

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.74  E-value=2.6e-17  Score=149.80  Aligned_cols=110  Identities=30%  Similarity=0.503  Sum_probs=97.6

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeEE
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGD  588 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG~  588 (726)
                      |.|+|++|++|++.+..|.+||||++.+++. ..+|+++++++||+|||.|.|.+.  ...|.|+|||++.+++|++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            7899999999999999999999999999875 469999999999999999999985  3689999999999999999999


Q ss_pred             EEEEccccCCC-CceeeEEecCCC-----CCeEEEEEEE
Q 004872          589 CVVEYQRLPPN-QMADKWIPLQGV-----RKGEIHVLIT  621 (726)
Q Consensus       589 ~~i~l~~l~~~-~~~~~w~~L~~~-----~~G~i~l~l~  621 (726)
                      +.++++.+..+ ...+.|++|.+.     ..|+|+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            99999888653 347899999753     3799998875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.74  E-value=5.1e-18  Score=155.92  Aligned_cols=92  Identities=16%  Similarity=0.347  Sum_probs=85.8

Q ss_pred             cccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEcc-EEeeeecCCCCCCcccceeEEEE
Q 004872          184 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-LTRRTDARPGSDPRWDSMFNMVL  262 (726)
Q Consensus       184 ~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~-~~rTt~i~~t~nP~WnEtf~~~v  262 (726)
                      ..|.|+|+|.+|.||..+|+.|+|                      ||||++++|+ ..||+++++++||+|||.|.|.+
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sS----------------------DPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v   61 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSS----------------------DPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTV   61 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCC----------------------CCeEEEEECCeeeeeeeecCCCCCcccceEEEEe
Confidence            569999999999999999987765                      9999999984 57888999999999999999999


Q ss_pred             ecCCceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872          263 HEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  298 (726)
Q Consensus       263 ~~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~  298 (726)
                      .+.+..|.+.|||+|.+ ++||+||.|+|+|+.+..
T Consensus        62 ~d~~~~lkv~VyD~D~f-s~dD~mG~A~I~l~p~~~   96 (168)
T KOG1030|consen   62 KDPNTPLKVTVYDKDTF-SSDDFMGEATIPLKPLLE   96 (168)
T ss_pred             cCCCceEEEEEEeCCCC-CcccccceeeeccHHHHH
Confidence            99999999999999998 899999999999998875

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.74  E-value=5.5e-17  Score=150.18  Aligned_cols=112  Identities=28%  Similarity=0.474  Sum_probs=101.1

Q ss_pred             ceEEEEEEEEeecCccccc----------CCCCccEEEEEECCeE-EEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEE
Q 004872          509 NGWIELVIVEARDLVAADL----------RGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRD  576 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d~----------~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d  576 (726)
                      .|.|+|+|++|++|+..+.          .|.+||||++.+++++ .+|+++++++||.|||+|.|.+. ...|.|+|||
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d   82 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHNGRNLELTVFH   82 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCCCCEEEEEEEe
Confidence            4889999999999998875          3689999999998865 69999999999999999999995 6789999999


Q ss_pred             CCCCCCCCeeEEEEEEccccCC--CCceeeEEecCCCCCeEEEEEEEE
Q 004872          577 HNALLASSSIGDCVVEYQRLPP--NQMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       577 ~d~~~~d~~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                      ++.++++++||++.++|.++..  +...+.|++|+  +.|+|++++++
T Consensus        83 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~  128 (132)
T cd04014          83 DAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIEL  128 (132)
T ss_pred             CCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEE
Confidence            9999999999999999999876  56789999998  57999999998

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.74  E-value=1.5e-17  Score=155.68  Aligned_cols=98  Identities=27%  Similarity=0.314  Sum_probs=87.7

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecC------------------C
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD------------------G  567 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~------------------~  567 (726)
                      .|+|+|++|+||+.  .+|.+||||+|++.+     .+.+|+++++|+||+|||+|.|.+.                  .
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            48999999999998  578999999999966     5779999999999999999999983                  2


Q ss_pred             CeEEEEEEECCCCCCCCeeEEEEEEccccCCC-CceeeEEecCC
Q 004872          568 SPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPLQG  610 (726)
Q Consensus       568 ~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L~~  610 (726)
                      ..|.|+|||++.+++|+|||++.|++..+..+ .....||+|+.
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~  122 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP  122 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence            46999999999988999999999999999876 67789999964

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.73  E-value=5.1e-17  Score=146.89  Aligned_cols=112  Identities=27%  Similarity=0.505  Sum_probs=102.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcceE
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG  456 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~iG  456 (726)
                      +++|+|++|++|+.++..+.+||||++++++..++|+++ ++.||.|||.|.|.+.+. ...|.|+|||++.. ++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            378999999999999988999999999999999999999 999999999999998775 68899999999987 899999


Q ss_pred             EEEEEccccccCCeeeeeeeccccccceeEEEEEEE
Q 004872          457 SARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT  492 (726)
Q Consensus       457 ~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~~~~~  492 (726)
                      ++.+++.++..+.....|++|.+. .|+|++.+.|.
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~  115 (116)
T cd08376          81 RCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT  115 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence            999999999888888999999874 69999988764

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.73  E-value=4.5e-17  Score=148.40  Aligned_cols=112  Identities=32%  Similarity=0.537  Sum_probs=102.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceEE
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMGS  457 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG~  457 (726)
                      |.|+|++|++|+..+..|.+||||++++++ ..++|+++ ++.||.|||.|.|.+......|.|+|||++.. ++++||.
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~   81 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGS   81 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEE
Confidence            899999999999999899999999999965 68999999 99999999999999876678899999999998 8999999


Q ss_pred             EEEEccccccCCeeeeeeeccccc----cceeEEEEEEE
Q 004872          458 ARVNLEGLVEGSVRDIWVPLEKVN----TGELRLQIEAT  492 (726)
Q Consensus       458 ~~i~L~~l~~~~~~~~w~~L~~~~----~G~I~l~~~~~  492 (726)
                      +.+++.++..+.....|++|.+.+    .|+|.+.+++.
T Consensus        82 ~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~  120 (121)
T cd04042          82 AFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT  120 (121)
T ss_pred             EEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence            999999999888888999997543    59999999875

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.73  E-value=2.4e-17  Score=149.54  Aligned_cols=113  Identities=22%  Similarity=0.407  Sum_probs=100.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-C-CCCCceeeEEEEEeeCC-ceeEEEEEEeecCCCCcce
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM  455 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~-t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~i  455 (726)
                      |.|.|+|.+|++|+..+..+.+||||++++++..++|+++ + +.||.|||.|.|.+..+ ...|.|+|||++..++++|
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i   80 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI   80 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence            4799999999999999989999999999999899999988 4 78999999999998764 6789999999987678999


Q ss_pred             EEEEEEccccccCCeeeeeeecccc--ccceeEEEEEE
Q 004872          456 GSARVNLEGLVEGSVRDIWVPLEKV--NTGELRLQIEA  491 (726)
Q Consensus       456 G~~~i~L~~l~~~~~~~~w~~L~~~--~~G~I~l~~~~  491 (726)
                      |++.+++.++..+.....||+|...  ..|+|+++++|
T Consensus        81 G~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          81 GDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             EEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence            9999999998877667899999864  36999999875

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.73  E-value=4.7e-17  Score=148.26  Aligned_cols=113  Identities=30%  Similarity=0.552  Sum_probs=102.3

Q ss_pred             cEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecCC
Q 004872          379 RKINVTVVEGKDLMPKDK------SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~------~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~  450 (726)
                      |.|.|+|.+|+||+..+.      .|.+||||++++++..++|+++ ++.||.|||.|.|.+.. ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            479999999999998774      3689999999999899999999 99999999999999865 477899999999877


Q ss_pred             CCcceEEEEEEccccccCCeeeeeeeccccccceeEEEEEE
Q 004872          451 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA  491 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~~~~  491 (726)
                      ++++||.+.+++.++..+.....||+|.+...|+|+++++|
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence            88999999999999988777889999998888999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.72  E-value=5.2e-17  Score=147.67  Aligned_cols=99  Identities=23%  Similarity=0.327  Sum_probs=86.8

Q ss_pred             ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCC-CCe
Q 004872          483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTL-NPQ  556 (726)
Q Consensus       483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~-nP~  556 (726)
                      .+|.++++|.              +..++|+|+|++|+||++.+..+.+||||+|++..     .++||+++++|+ ||+
T Consensus         1 ~el~~sL~Y~--------------p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~   66 (135)
T cd08692           1 AELQLGTCFQ--------------AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVK   66 (135)
T ss_pred             CeEEEEeeec--------------CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCce
Confidence            3788999988              67799999999999999987677889999999832     478999999996 699


Q ss_pred             eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEccc
Q 004872          557 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQR  595 (726)
Q Consensus       557 wne~~~f~v~----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~  595 (726)
                      |||+|.|+++    +..|.++|||++..+++++||++.++.+.
T Consensus        67 fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~  109 (135)
T cd08692          67 WGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDS  109 (135)
T ss_pred             ecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCcc
Confidence            9999999985    45789999999999999999999999865

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.72  E-value=3.4e-17  Score=146.39  Aligned_cols=99  Identities=30%  Similarity=0.583  Sum_probs=90.0

Q ss_pred             EEEEEEEeecCccccc-CCCCccEEEEEECCeEEEeEeeeCCCCCee-eeEEEEecC-----CCeEEEEEEECCCCCCCC
Q 004872          512 IELVIVEARDLVAADL-RGTSDPYVKVQYGDLKKRTKVIFKTLNPQW-HQTLEFPDD-----GSPLTLHVRDHNALLASS  584 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~v~~~t~nP~w-ne~~~f~v~-----~~~l~i~V~d~d~~~~d~  584 (726)
                      |.|+|++|++|+.++. .|.+||||++++++.++||+++++++||.| ||+|.|.+.     ...|.|+|||++.+++|+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            5799999999999884 789999999999999999999999999999 999999985     368999999999999999


Q ss_pred             eeEEEEEEccccCC---CCceeeEEecCC
Q 004872          585 SIGDCVVEYQRLPP---NQMADKWIPLQG  610 (726)
Q Consensus       585 ~lG~~~i~l~~l~~---~~~~~~w~~L~~  610 (726)
                      +||++.+++.++..   +...+.||+|.+
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            99999999999966   456889999864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.72  E-value=7.8e-17  Score=147.50  Aligned_cols=116  Identities=31%  Similarity=0.395  Sum_probs=100.2

Q ss_pred             ceEEEEEEEEeecCcccc-cCCCCccEEEEEECC--eEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCC
Q 004872          509 NGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLAS  583 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~--~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d  583 (726)
                      .|.|+|+|++|++|+..+ ..+.+||||++.+++  ..++|+++.++.||.|||.|.|.+.  ...|.|+|||++..++|
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence            378999999999999755 456799999999987  7899999999999999999999974  67899999999999899


Q ss_pred             CeeEEEEEEccccCCCCcee-eEEec--CCCCCeEEEEEEEEEec
Q 004872          584 SSIGDCVVEYQRLPPNQMAD-KWIPL--QGVRKGEIHVLITRKVP  625 (726)
Q Consensus       584 ~~lG~~~i~l~~l~~~~~~~-~w~~L--~~~~~G~i~l~l~~~~p  625 (726)
                      ++||++.+++.++..+.... .|+.+  .++..|+|+++++| .|
T Consensus        81 ~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~-~p  124 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRF-FP  124 (124)
T ss_pred             ceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEe-CC
Confidence            99999999999998766554 34444  45678999999998 54

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.72  E-value=8.2e-17  Score=149.83  Aligned_cols=112  Identities=27%  Similarity=0.452  Sum_probs=95.7

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  556 (726)
                      .|+|.+++.|.              +..+.|+|+|++|++|+..+..|.+||||+|++.+     .+++|+++++++||.
T Consensus         1 ~G~l~~~l~y~--------------~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~   66 (136)
T cd08402           1 LGDICFSLRYV--------------PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPY   66 (136)
T ss_pred             CcEEEEEeEEc--------------CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCc
Confidence            38999999988              67799999999999999999999999999999942     357899999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      |||+|.|.+.     ...|.|+|||++.+++|++||++.+++...  +.....|+++.
T Consensus        67 wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~  122 (136)
T cd08402          67 YNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDML  122 (136)
T ss_pred             ccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHH
Confidence            9999999985     247999999999999999999999999764  33344555543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.71  E-value=4.9e-17  Score=144.12  Aligned_cols=98  Identities=23%  Similarity=0.398  Sum_probs=88.8

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      .|.|+|++|++|+..+..+.+||||++++++++++|++++++.||+|||+|.|.+.   .+.|.|+|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            37899999999999998999999999999999999999999999999999999985   4679999999986   78999


Q ss_pred             EEEEEccccCCC--CceeeEEecCCC
Q 004872          588 DCVVEYQRLPPN--QMADKWIPLQGV  611 (726)
Q Consensus       588 ~~~i~l~~l~~~--~~~~~w~~L~~~  611 (726)
                      ++.++|.++...  ...+.||+|.+.
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecCCC
Confidence            999999998654  367899999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.71  E-value=1.2e-16  Score=148.00  Aligned_cols=113  Identities=23%  Similarity=0.492  Sum_probs=101.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcce
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENM  455 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~i  455 (726)
                      |.|.|+|++|++|+..+..|.+||||++++++..++|+++ ++.||.||+.|.|.+.+. ...|.|+|||++.. +|++|
T Consensus        15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~l   94 (136)
T cd08375          15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFL   94 (136)
T ss_pred             EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCee
Confidence            5899999999999999989999999999999999999999 999999999999998764 57899999999987 78999


Q ss_pred             EEEEEEcccccc-----CCeeeeeeeccccccceeEEEEEE
Q 004872          456 GSARVNLEGLVE-----GSVRDIWVPLEKVNTGELRLQIEA  491 (726)
Q Consensus       456 G~~~i~L~~l~~-----~~~~~~w~~L~~~~~G~I~l~~~~  491 (726)
                      |++.+++.++..     ......|..+.+...|+|++++.+
T Consensus        95 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          95 GRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             EEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            999999999986     334567888888888999999865

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.71  E-value=1.5e-16  Score=146.33  Aligned_cols=109  Identities=28%  Similarity=0.453  Sum_probs=98.3

Q ss_pred             EEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEE
Q 004872          516 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCV  590 (726)
Q Consensus       516 v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~  590 (726)
                      |++|++|+.  ..|.+||||++++++.+++|++++++.||+|||+|.|++.     ...|.|+|||++..++|++||++.
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~   79 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT   79 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence            689999998  6789999999999999999999999999999999999983     578999999999999999999999


Q ss_pred             EEccccCCCCceeeEEecCCC----CCeEEEEEEEEEecCc
Q 004872          591 VEYQRLPPNQMADKWIPLQGV----RKGEIHVLITRKVPEL  627 (726)
Q Consensus       591 i~l~~l~~~~~~~~w~~L~~~----~~G~i~l~l~~~~p~~  627 (726)
                      ++++++..+.....|++|.+.    .+|+|+++++| .|.+
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~-~~~~  119 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSY-QPPD  119 (127)
T ss_pred             EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEE-eCCC
Confidence            999999988888999999632    35999999999 6544

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.71  E-value=9.1e-17  Score=149.10  Aligned_cols=112  Identities=26%  Similarity=0.450  Sum_probs=93.4

Q ss_pred             ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee
Q 004872          483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW  557 (726)
Q Consensus       483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w  557 (726)
                      |+|.++++|.              +..+.|+|+|++|++|+..+..|.+||||++++..     .+++|+++++|+||+|
T Consensus         1 G~i~~~l~y~--------------~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~w   66 (135)
T cd08410           1 GELLLSLNYL--------------PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFY   66 (135)
T ss_pred             CcEEEEEEEC--------------CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCcc
Confidence            8999999988              66799999999999999999999999999999832     3579999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      ||+|.|.+.     ...|.|+|||+|..+++++||++.+....... ...+.|+.+.
T Consensus        67 nE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~  122 (135)
T cd08410          67 NESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRML  122 (135)
T ss_pred             ceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHH
Confidence            999999984     34699999999999999999999876543322 1235565554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.71  E-value=5.5e-17  Score=152.06  Aligned_cols=105  Identities=23%  Similarity=0.422  Sum_probs=92.1

Q ss_pred             EEEEEEEEeecCcccccCC--------------CCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC----CCeEEE
Q 004872          511 WIELVIVEARDLVAADLRG--------------TSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----GSPLTL  572 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g--------------~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i  572 (726)
                      .|.|+|++|++|+.+|..+              .+||||+|.+++++.+|+++++++||+|||+|.|++.    ...|.|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            3789999999999988543              7899999999999999999999999999999999962    468999


Q ss_pred             EEEECCCCCCCCeeEEEEEEccccCCCCc-------eeeEEecCCCCCeE
Q 004872          573 HVRDHNALLASSSIGDCVVEYQRLPPNQM-------ADKWIPLQGVRKGE  615 (726)
Q Consensus       573 ~V~d~d~~~~d~~lG~~~i~l~~l~~~~~-------~~~w~~L~~~~~G~  615 (726)
                      +|||+|..++|++||++.+++.++.....       ...|+.|.+.++|.
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~  130 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY  130 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence            99999999999999999999998865442       36899998877764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.71  E-value=1.1e-16  Score=148.99  Aligned_cols=111  Identities=32%  Similarity=0.467  Sum_probs=94.7

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC--C---eEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D---LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~v~~~t~nP~  556 (726)
                      .|+|.++++|.              +..+.|.|+|++|+||+..+..|.+||||++.+.  +   .+.+|+++++++||+
T Consensus         1 ~G~l~~sl~y~--------------~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~   66 (136)
T cd08405           1 RGELLLSLCYN--------------PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV   66 (136)
T ss_pred             CcEEEEEEEEc--------------CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCc
Confidence            48999999998              5669999999999999999989999999999983  2   357899999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872          557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL  608 (726)
Q Consensus       557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  608 (726)
                      |||+|.|.+.     ...|.|+|||++.++++++||++.+++...  +.....|+++
T Consensus        67 wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~  121 (136)
T cd08405          67 FNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDM  121 (136)
T ss_pred             ccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHH
Confidence            9999999974     457999999999999999999999999865  2233444444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.71  E-value=1.2e-16  Score=148.42  Aligned_cols=100  Identities=18%  Similarity=0.271  Sum_probs=89.8

Q ss_pred             ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC------eEEEeEeeeCCCCCe
Q 004872          483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~  556 (726)
                      |+|.+++.|.              +..+.|.|+|++|+||+..+..|.+||||++++..      .++||+++++++||+
T Consensus         2 ~ei~~sL~Y~--------------~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPv   67 (138)
T cd08408           2 PELLLGLEYN--------------ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPE   67 (138)
T ss_pred             CeEEEEeEEc--------------CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCc
Confidence            6888999887              66799999999999999999999999999999942      256999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEcccc
Q 004872          557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL  596 (726)
Q Consensus       557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l  596 (726)
                      |||+|.|+++     ...|.|+|||++.++++++||++.+++...
T Consensus        68 fnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~  112 (138)
T cd08408          68 FKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSS  112 (138)
T ss_pred             EeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCC
Confidence            9999999984     468999999999999999999999998744

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.71  E-value=3.8e-17  Score=152.08  Aligned_cols=113  Identities=27%  Similarity=0.392  Sum_probs=98.3

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  556 (726)
                      .|+|.++++|.              +..+.|.|+|++|+||+..+..|.+||||++++.+     .+.+|+++++++||.
T Consensus         1 ~G~l~~~l~y~--------------~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~   66 (136)
T cd08404           1 RGELLLSLCYQ--------------PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPV   66 (136)
T ss_pred             CCeEEEEEEEe--------------CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCc
Confidence            48999999987              45689999999999999999999999999999842     256899999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872          557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  610 (726)
Q Consensus       557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  610 (726)
                      |||+|.|.+.     ...|.|+|||+|.++++++||++.+++..  .+.....|++|..
T Consensus        67 w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~  123 (136)
T cd08404          67 FNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN  123 (136)
T ss_pred             cCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence            9999999984     45789999999999999999999999988  3455677887753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.71  E-value=1.8e-16  Score=145.56  Aligned_cols=110  Identities=23%  Similarity=0.380  Sum_probs=97.6

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEECC---eEEEeEeeeCCCCCeeeeEEEEecCC---CeEEEEEEECCCCCCCC
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLHVRDHNALLASS  584 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~~---~~l~i~V~d~d~~~~d~  584 (726)
                      .|+|+|++|++|+..+..+.+||||++.+++   ...+|+++++++||.|||+|.|.+..   ..|.|+|||++..++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            5899999999999999999999999999864   36799999999999999999999853   68999999999988999


Q ss_pred             eeEEEEEEccccCC---CCceeeEEecCCCCCeEEEEEEEE
Q 004872          585 SIGDCVVEYQRLPP---NQMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       585 ~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                      +||++.++|..+..   +...+.|++|.+  .|+|++++.+
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~  120 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSM  120 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEE
Confidence            99999999987532   446789999985  7999999988

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.70  E-value=1.4e-16  Score=146.73  Aligned_cols=113  Identities=31%  Similarity=0.517  Sum_probs=101.0

Q ss_pred             cEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecCC-CCc
Q 004872          379 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDE  453 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~--~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~-~d~  453 (726)
                      |.|.|+|++|++|+..+.  .+.+||||++++++..++|+++ ++.||.|||.|.|.+.+ ....|.|+|||++.. +++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            489999999999998888  8899999999999999999999 99999999999999887 477899999999987 889


Q ss_pred             ceEEEEEEcccccc---CCeeeeeeecccc-------ccceeEEEEEE
Q 004872          454 NMGSARVNLEGLVE---GSVRDIWVPLEKV-------NTGELRLQIEA  491 (726)
Q Consensus       454 ~iG~~~i~L~~l~~---~~~~~~w~~L~~~-------~~G~I~l~~~~  491 (726)
                      +||++.+++.++..   ......||+|.+.       .+|+|.+++.|
T Consensus        81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            99999999999973   3346799999875       37999998876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.70  E-value=1.6e-16  Score=149.52  Aligned_cols=112  Identities=28%  Similarity=0.447  Sum_probs=99.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-C-CCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcceE
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG  456 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~-t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~iG  456 (726)
                      |.|+|++|++|+.++.+|.+||||+++++++.++|+++ + +.||.|||.|.|.+.++ ...+.|+|||++.. ++++||
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG   81 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG   81 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence            89999999999999999999999999999999999999 6 69999999999998764 56899999999887 899999


Q ss_pred             EEEEEccccccC----Ceeeeeeeccccc-----------cceeEEEEEEE
Q 004872          457 SARVNLEGLVEG----SVRDIWVPLEKVN-----------TGELRLQIEAT  492 (726)
Q Consensus       457 ~~~i~L~~l~~~----~~~~~w~~L~~~~-----------~G~I~l~~~~~  492 (726)
                      ++.++|.++..+    .....||+|.+..           +|+|+|++.+.
T Consensus        82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             EEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence            999999998743    3468999998643           38999999876

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.70  E-value=1.9e-16  Score=143.78  Aligned_cols=111  Identities=23%  Similarity=0.337  Sum_probs=100.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCCCCcce
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENM  455 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg---~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~i  455 (726)
                      |.|+|++|++|+..+..+.+||||+++++   ...+||+++ ++.||.|||+|.|.+... ...|.|+|||++..++++|
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i   81 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL   81 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence            78999999999998888999999999994   468899999 999999999999997664 5679999999987788999


Q ss_pred             EEEEEEccccccCCeeeeeeeccccccceeEEEEEE
Q 004872          456 GSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA  491 (726)
Q Consensus       456 G~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~~~~  491 (726)
                      |++.+++.++..+.....|++|.+.++|++.+++..
T Consensus        82 G~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          82 GTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             EEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence            999999999988888899999999888999998864

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.70  E-value=9e-17  Score=142.67  Aligned_cols=96  Identities=15%  Similarity=0.230  Sum_probs=80.2

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc-cEEeeeecCCCCCCcccceeEEEEec
Q 004872          186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMVLHE  264 (726)
Q Consensus       186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g-~~~rTt~i~~t~nP~WnEtf~~~v~~  264 (726)
                      |+|.|+|++|++|+..+..+.                  .+..+||||+|+++ ...||++++++.||+|||+|.|.+.+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~------------------~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~   62 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTR------------------TGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYP   62 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCC------------------CCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeC
Confidence            899999999999998764211                  01113999999997 56789999999999999999999865


Q ss_pred             C--CceEEEEEEEeCCCCCCcceeEEEEEeceeccCCC
Q 004872          265 E--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS  300 (726)
Q Consensus       265 ~--~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~  300 (726)
                      .  ...|.|+|||+|.. ++|++||++.++|++|....
T Consensus        63 ~~~~~~L~~~V~D~d~~-~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          63 HEKNFDIQFKVLDKDKF-SFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             ccCCCEEEEEEEECCCC-CCCcceEEEEEEHHHHHhhC
Confidence            4  45899999999986 78999999999999998644

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.70  E-value=5.9e-17  Score=150.62  Aligned_cols=111  Identities=20%  Similarity=0.343  Sum_probs=94.3

Q ss_pred             ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee
Q 004872          483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW  557 (726)
Q Consensus       483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w  557 (726)
                      |+|.+++.|.              +..+.|.|+|++|+||+..+ .+.+||||++++..     .+++|++++++.||+|
T Consensus         2 G~i~~sl~y~--------------~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~f   66 (137)
T cd08409           2 GDIQISLTYN--------------PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSF   66 (137)
T ss_pred             cEEEEEEEEC--------------CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcc
Confidence            8999999988              56699999999999999988 78899999999843     3669999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872          558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL  608 (726)
Q Consensus       558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  608 (726)
                      ||+|.|.++     ...|.|+|||++..+++++||++.++......+...+.|..+
T Consensus        67 nE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~  122 (137)
T cd08409          67 NESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDM  122 (137)
T ss_pred             cceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHH
Confidence            999999984     468999999999999999999999987655444444445444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.70  E-value=1.7e-16  Score=146.77  Aligned_cols=118  Identities=31%  Similarity=0.484  Sum_probs=105.3

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  556 (726)
                      +|+|+|+++|.                .+.|+|+|++|++|+..+..+.+||||+|.+.+     ..++|++++++.||.
T Consensus         1 ~g~~~~~~~~~----------------~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~   64 (131)
T cd04026           1 RGRIYLKISVK----------------DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPV   64 (131)
T ss_pred             CcEEEEEEEEC----------------CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCC
Confidence            48999999876                288999999999999988889999999999953     578999999999999


Q ss_pred             eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCCCeEE
Q 004872          557 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEI  616 (726)
Q Consensus       557 wne~~~f~v~----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i  616 (726)
                      |||+|.|.+.    ...|.|+|||++..+++++||++.+++.++... ..+.||+|.+...|+.
T Consensus        65 wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~  127 (131)
T cd04026          65 WNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY  127 (131)
T ss_pred             ccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence            9999999985    357999999999988999999999999999754 6789999998888864

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.70  E-value=1.7e-16  Score=144.25  Aligned_cols=110  Identities=23%  Similarity=0.407  Sum_probs=97.4

Q ss_pred             EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceE
Q 004872          381 INVTVVEGKDLMPKD-KSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  456 (726)
Q Consensus       381 L~V~V~~a~~L~~~d-~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG  456 (726)
                      |.|+|.+|+||+.++ ..|.+||||+++++++ .++|+++ ++.||.|||.|.|.+.+....|.|.|||++.. ++++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            789999999998864 4578999999999654 7899999 99999999999999877667999999999988 899999


Q ss_pred             EEEEEccccccCCeeeeeeeccccc-----cceeEEEEE
Q 004872          457 SARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIE  490 (726)
Q Consensus       457 ~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~~  490 (726)
                      .+.++++++..+...+.||+|+...     .|+|+++++
T Consensus        82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR  120 (121)
T ss_pred             EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence            9999999998777788999998632     699998875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.70  E-value=1.4e-16  Score=146.46  Aligned_cols=112  Identities=33%  Similarity=0.479  Sum_probs=99.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC----ceeEEEEEEeecCC--CCc
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEEIF--GDE  453 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~~~~--~d~  453 (726)
                      |.|+|++|++|...+..|.+||||+++++++.+||+++ ++.||.|||.|.|.+...    ...|.|+|||++..  +++
T Consensus         2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~   81 (127)
T cd04022           2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS   81 (127)
T ss_pred             eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence            89999999999998888999999999999999999999 999999999999998753    35799999998876  689


Q ss_pred             ceEEEEEEccccc-cCCeeeeeeecccc-----ccceeEEEEEEE
Q 004872          454 NMGSARVNLEGLV-EGSVRDIWVPLEKV-----NTGELRLQIEAT  492 (726)
Q Consensus       454 ~iG~~~i~L~~l~-~~~~~~~w~~L~~~-----~~G~I~l~~~~~  492 (726)
                      +||++.++++++. .+.....||+|...     .+|+|.|++.+.
T Consensus        82 ~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          82 FLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             eeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            9999999999997 45567899999864     379999988764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.70  E-value=1.7e-16  Score=144.93  Aligned_cols=109  Identities=22%  Similarity=0.370  Sum_probs=94.6

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEEC-CeEEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCC--CCeeE
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYG-DLKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLA--SSSIG  587 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-~~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~--d~~lG  587 (726)
                      |+|+|++|++|+..+..+.+||||+++++ .+.++|+++++++||.|||+|.|++. ...|.|+|||++.+++  |++||
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~~~~~d~~lG   81 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKFKKKDQGFLG   81 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCCCCCCCceEe
Confidence            78999999999999999999999999996 67889999999999999999999985 6789999999998875  58999


Q ss_pred             EEEEEccccCCCC-ceeeEEecCC-------CCCeEEEEEE
Q 004872          588 DCVVEYQRLPPNQ-MADKWIPLQG-------VRKGEIHVLI  620 (726)
Q Consensus       588 ~~~i~l~~l~~~~-~~~~w~~L~~-------~~~G~i~l~l  620 (726)
                      ++.+++.++.... ....|++|..       ...|+|.+++
T Consensus        82 ~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          82 CVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             EEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence            9999999986443 4478999953       2258888876

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.70  E-value=1.3e-16  Score=141.68  Aligned_cols=91  Identities=22%  Similarity=0.249  Sum_probs=81.3

Q ss_pred             eEEEEEEEEeecCccccc----CCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC----CCeEEEEEEECCCCC
Q 004872          510 GWIELVIVEARDLVAADL----RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----GSPLTLHVRDHNALL  581 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~----~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i~V~d~d~~~  581 (726)
                      |.|.|+|.+|++|+..+.    .+.+||||+++++++++||+++++++||+|||.|.|.+.    ...|.|+|||+|.++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            689999999999998763    245899999999999999999999999999999999973    347999999999999


Q ss_pred             CCCeeEEEEEEccccCCCC
Q 004872          582 ASSSIGDCVVEYQRLPPNQ  600 (726)
Q Consensus       582 ~d~~lG~~~i~l~~l~~~~  600 (726)
                      +|++||++.++|+++..+.
T Consensus        81 ~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          81 FNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCcceEEEEEEHHHHHhhC
Confidence            9999999999999986543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.69  E-value=2.5e-16  Score=146.14  Aligned_cols=110  Identities=35%  Similarity=0.469  Sum_probs=93.8

Q ss_pred             ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee
Q 004872          483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW  557 (726)
Q Consensus       483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w  557 (726)
                      |+|.+++.|.              +..+.|+|+|++|++|++.+..|.+||||++++..     .+++|+++++++||.|
T Consensus         1 g~l~~~~~y~--------------~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~w   66 (134)
T cd08403           1 GELMFSLCYL--------------PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTY   66 (134)
T ss_pred             CeEEEEEEEc--------------CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcc
Confidence            7899999988              66799999999999999999999999999999842     3678999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872          558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL  608 (726)
Q Consensus       558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  608 (726)
                      ||+|.|.+.     ...|.|+|||++.++++++||++.+++...  +.....|+++
T Consensus        67 ne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~  120 (134)
T cd08403          67 NEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM  120 (134)
T ss_pred             cceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence            999999974     346999999999999999999999998732  3334455554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.69  E-value=3.3e-16  Score=143.83  Aligned_cols=108  Identities=35%  Similarity=0.570  Sum_probs=94.9

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCC--------
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL--------  580 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~--------  580 (726)
                      .|+|+|++|++|+..+..|.+||||++++++...+|+++.+++||.|||+|.|.+.  ...|.|+|||+|..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            68999999999999999999999999999999999999999999999999999874  56899999999853        


Q ss_pred             ---CCCCeeEEEEEEccccCCCCceeeEEecCC-----CCCeEEEEEE
Q 004872          581 ---LASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLI  620 (726)
Q Consensus       581 ---~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l  620 (726)
                         +.+++||++.+++..+..  ..+.|++|..     ..+|+|++++
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             ccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence               468999999999998853  4579999974     3469998874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.69  E-value=5.3e-16  Score=142.23  Aligned_cols=111  Identities=24%  Similarity=0.349  Sum_probs=97.5

Q ss_pred             ceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCee
Q 004872          509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSI  586 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~l  586 (726)
                      .+.++|+|++|++|+..+..|.+||||++.+++++++|++++++.||+|||.|.|.+.  ...|.|+|||++..+ |++|
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~-d~~l   80 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC-DEFL   80 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCC-CCce
Confidence            4789999999999999999999999999999999999999999999999999999863  568999999999875 8999


Q ss_pred             EEEEEEccccCCCCceeeEEecC-------CCCCeEEEEEEEE
Q 004872          587 GDCVVEYQRLPPNQMADKWIPLQ-------GVRKGEIHVLITR  622 (726)
Q Consensus       587 G~~~i~l~~l~~~~~~~~w~~L~-------~~~~G~i~l~l~~  622 (726)
                      |++.+++..+..  ....|++|.       +...|+|.+++.+
T Consensus        81 G~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~  121 (126)
T cd04046          81 GQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTS  121 (126)
T ss_pred             EEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence            999999987643  445788884       3456999999987

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.69  E-value=1.1e-16  Score=143.47  Aligned_cols=97  Identities=29%  Similarity=0.502  Sum_probs=86.7

Q ss_pred             eEEEEEEEEeecCcccccC-CCCccEEEEEECC---eEEEeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCC
Q 004872          510 GWIELVIVEARDLVAADLR-GTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNA  579 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~d~  579 (726)
                      |.|+|+|++|++|+..+.. |.+||||+|++.+   ..++|+++++++||+|||+|.|.+.      ...|.++|||+|.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999987 9999999999843   4679999999999999999999863      3589999999999


Q ss_pred             CCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          580 LLASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       580 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      +++|++||++.+++.++..   ...|++++
T Consensus        81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~  107 (111)
T cd04041          81 FTADDRLGRVEIDLKELIE---DRNWMGRR  107 (111)
T ss_pred             CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence            9999999999999999973   45888875

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.69  E-value=4.9e-16  Score=145.55  Aligned_cols=118  Identities=17%  Similarity=0.226  Sum_probs=96.3

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEE-----CCeEEEeEeeeCCCCCeeeeEEEEecCC-----------CeEEEE
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEFPDDG-----------SPLTLH  573 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP~wne~~~f~v~~-----------~~l~i~  573 (726)
                      +.|.|....+.+|+..+..+.+||||++++     ..++.||+++++|+||+|||+|.|.+..           ..|.++
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            344444444444788888899999999997     2368899999999999999999999853           369999


Q ss_pred             EEECCCC-CCCCeeEEEEEEccccCCCCceeeEEecC-C--CCCeEEEEEEEEEecCc
Q 004872          574 VRDHNAL-LASSSIGDCVVEYQRLPPNQMADKWIPLQ-G--VRKGEIHVLITRKVPEL  627 (726)
Q Consensus       574 V~d~d~~-~~d~~lG~~~i~l~~l~~~~~~~~w~~L~-~--~~~G~i~l~l~~~~p~~  627 (726)
                      |||++.+ .+|++||++.++|+.+..+.....|++|. |  ..+|+|++++..+-|-.
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~  141 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREPLT  141 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCCCc
Confidence            9999986 57999999999999998887778899986 3  34699999999865543

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.69  E-value=3.7e-16  Score=144.88  Aligned_cols=111  Identities=22%  Similarity=0.321  Sum_probs=95.1

Q ss_pred             eeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeee
Q 004872          484 ELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWH  558 (726)
Q Consensus       484 ~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wn  558 (726)
                      +|.+++.|.              +..+.|.|+|++|++|++.+..|.+||||++++.+     .+.+|+++++++||+||
T Consensus         1 ~i~~~l~y~--------------~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wn   66 (133)
T cd08384           1 KILVSLMYN--------------TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFN   66 (133)
T ss_pred             CEEEEEEEc--------------CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcc
Confidence            367788776              56799999999999999999999999999999953     36799999999999999


Q ss_pred             eEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872          559 QTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  610 (726)
Q Consensus       559 e~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  610 (726)
                      |+|.|.+.     ...|.|+|||+|..+++++||++.+++..  .++....|+++..
T Consensus        67 e~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~  121 (133)
T cd08384          67 EEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK  121 (133)
T ss_pred             cEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence            99999984     35799999999999999999999999985  3344567777643

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.69  E-value=2.2e-16  Score=146.25  Aligned_cols=103  Identities=28%  Similarity=0.413  Sum_probs=92.9

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-------CeEEEeEeeeCCCC
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-------DLKKRTKVIFKTLN  554 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~v~~~t~n  554 (726)
                      .|+|.++++|.              ...+.|+|+|++|++|+..+..|.+||||+|++.       ..+++|+++++|+|
T Consensus         2 ~G~l~~~l~y~--------------~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~n   67 (133)
T cd04009           2 YGVLTVKAYYR--------------ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLF   67 (133)
T ss_pred             ceEEEEEEEEc--------------CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCC
Confidence            59999999987              4568999999999999999988999999999995       24789999999999


Q ss_pred             CeeeeEEEEecC-------CCeEEEEEEECCCCCCCCeeEEEEEEccccCC
Q 004872          555 PQWHQTLEFPDD-------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP  598 (726)
Q Consensus       555 P~wne~~~f~v~-------~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~  598 (726)
                      |+|||+|.|++.       ...|.|+|||++.+++|++||++.++|+++..
T Consensus        68 P~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          68 PLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             CccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            999999999973       35799999999999999999999999998864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.68  E-value=3.2e-16  Score=140.44  Aligned_cols=99  Identities=27%  Similarity=0.371  Sum_probs=88.6

Q ss_pred             CceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC-------CCeEEEEEEECCCC
Q 004872          508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-------GSPLTLHVRDHNAL  580 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~-------~~~l~i~V~d~d~~  580 (726)
                      ....|+|+|++|++|+    .|.+||||++++++++++|+++++++||.|||+|.|.+.       ...|.|+|||++.+
T Consensus         2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            4578999999999998    578999999999999999999999999999999999963       36799999999999


Q ss_pred             CCCCeeEEEEEEccccCCC---CceeeEEecCC
Q 004872          581 LASSSIGDCVVEYQRLPPN---QMADKWIPLQG  610 (726)
Q Consensus       581 ~~d~~lG~~~i~l~~l~~~---~~~~~w~~L~~  610 (726)
                      ++|++||++.++|+.+..+   ....+|++|.+
T Consensus        78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            9999999999999999554   45689999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.68  E-value=4.6e-16  Score=139.38  Aligned_cols=103  Identities=17%  Similarity=0.346  Sum_probs=87.1

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      +.|.|.|++|++|+..+   ..||||++.+++++.+|++.++ .||.|||.|.|.+.  ...|.|+|||+|.+ .|++||
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG   76 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG   76 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence            68999999999997643   4599999999999999999988 49999999999984  45699999999965 899999


Q ss_pred             EEEEEccccCCCCce--eeEEecCC---CCCeEEE
Q 004872          588 DCVVEYQRLPPNQMA--DKWIPLQG---VRKGEIH  617 (726)
Q Consensus       588 ~~~i~l~~l~~~~~~--~~w~~L~~---~~~G~i~  617 (726)
                      ++.++|.++..+...  .+||+|+.   ...|++.
T Consensus        77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~  111 (127)
T cd08394          77 TVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIV  111 (127)
T ss_pred             EEEEEhHHcccCCCCCCCccEecChHHhccCCeEe
Confidence            999999999755544  89999984   3346554

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.68  E-value=4.8e-16  Score=147.88  Aligned_cols=114  Identities=25%  Similarity=0.444  Sum_probs=99.8

Q ss_pred             cEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECC-eEeecccc-CCCCCcee
Q 004872          379 RKINVTVVEGKDLMPKD------------------------------KSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWN  426 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d------------------------------~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~wn  426 (726)
                      |.|.|+|++|++|+.+|                              ..|.+||||+|.+++ ...||+++ ++.||.||
T Consensus         7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn   86 (158)
T cd04015           7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN   86 (158)
T ss_pred             eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence            58999999999999887                              346789999999975 45799999 99999999


Q ss_pred             eEEEEEeeCCceeEEEEEEeecCCCCcceEEEEEEccccccCCeeeeeeecccc------ccceeEEEEEEE
Q 004872          427 QKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEAT  492 (726)
Q Consensus       427 e~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~I~l~~~~~  492 (726)
                      |+|.|.+.+....|.|.|||++..++++||.+.++++++..+...+.||+|.+.      ..|+|+++++|.
T Consensus        87 E~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          87 ESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             eEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence            999999877777899999999887788999999999999888788899999753      258999999873

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.68  E-value=5.2e-16  Score=141.24  Aligned_cols=97  Identities=24%  Similarity=0.374  Sum_probs=87.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeecC
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEI  449 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~  449 (726)
                      .|.|+|++|+||+.++ .+.+||||++++.     ..++||+++ ++.||.|||+|.|.+.+    ....|.|+|||++.
T Consensus        14 ~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~   92 (122)
T cd08381          14 TLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDS   92 (122)
T ss_pred             EEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCC
Confidence            7999999999999999 8999999999994     347899999 99999999999998632    36789999999998


Q ss_pred             C-CCcceEEEEEEccccccCCeeeeeeec
Q 004872          450 F-GDENMGSARVNLEGLVEGSVRDIWVPL  477 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L  477 (726)
                      . ++++||++.++|.++..+.....||+|
T Consensus        93 ~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          93 LVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CcCCcEEEEEEEeccccccCCCccceEEC
Confidence            8 799999999999999877777899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.67  E-value=5.9e-16  Score=142.01  Aligned_cols=112  Identities=17%  Similarity=0.308  Sum_probs=99.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC--CeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceE
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG--KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  456 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG  456 (726)
                      |.|+|++|+||+.  ..|.+||||+++++  .+.++|+++ ++.||.|||.|.|.+......|.|+|||++.. ++++||
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG   78 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG   78 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence            5799999999987  67899999999996  467899999 99999999999999866677899999999988 799999


Q ss_pred             EEEEEccccccCCeeeeeeecccc------ccceeEEEEEEEEe
Q 004872          457 SARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRV  494 (726)
Q Consensus       457 ~~~i~L~~l~~~~~~~~w~~L~~~------~~G~I~l~~~~~~~  494 (726)
                      ++.+++.++........||+|.+.      ..|+|.+++.|.+.
T Consensus        79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence            999999999987777899999854      37999999999843

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.67  E-value=1.2e-15  Score=142.02  Aligned_cols=101  Identities=24%  Similarity=0.340  Sum_probs=88.7

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCCcEEEEEE--CC---eEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEE-eecCC-
Q 004872          380 KINVTVVEGKDLMPKD-KSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY-NEEIF-  450 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d-~~g~~dpyv~v~l--g~---~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~-d~~~~-  450 (726)
                      .|.|+|++|+||..++ ..|.+||||++++  ++   .++||+++ ++.||+|||+|.|.+......|.|+|| |++.. 
T Consensus        30 ~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~  109 (146)
T cd04028          30 QLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMD  109 (146)
T ss_pred             EEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCC
Confidence            7999999999998764 5688999999999  33   37899999 999999999999998866889999999 56666 


Q ss_pred             CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872          451 GDENMGSARVNLEGLVEGSVRDIWVPLEKV  480 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  480 (726)
                      ++++||++.++|+++..+.....||+|.+.
T Consensus       110 ~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028         110 KKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            789999999999999767777899999864

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.67  E-value=5.7e-16  Score=141.74  Aligned_cols=99  Identities=21%  Similarity=0.378  Sum_probs=87.6

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecC
Q 004872          380 KINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEI  449 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~  449 (726)
                      .|.|+|++|+||+.++.. |.+||||++++.     ..++||+++ ++.||.|||+|.|.+..   ....|.|+|||++.
T Consensus        16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~   95 (125)
T cd08393          16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS   95 (125)
T ss_pred             EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC
Confidence            799999999999999875 899999999992     246899999 99999999999999754   25689999999998


Q ss_pred             C-CCcceEEEEEEccccccCCeeeeeeecc
Q 004872          450 F-GDENMGSARVNLEGLVEGSVRDIWVPLE  478 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~  478 (726)
                      . ++++||++.++|.++........||+|.
T Consensus        96 ~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          96 LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            7 8899999999999997777778999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.67  E-value=3.1e-16  Score=145.55  Aligned_cols=115  Identities=29%  Similarity=0.438  Sum_probs=101.3

Q ss_pred             ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee
Q 004872          483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW  557 (726)
Q Consensus       483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w  557 (726)
                      |+|.++++|.              +..+.|.|+|++|+||+..+..+.+||||++++.+     .+++|+++.++.||.|
T Consensus         1 G~i~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~w   66 (134)
T cd00276           1 GELLLSLSYL--------------PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVF   66 (134)
T ss_pred             CeEEEEEEee--------------CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCee
Confidence            7899999987              55689999999999999998889999999999954     2569999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCCC
Q 004872          558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRK  613 (726)
Q Consensus       558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~  613 (726)
                      ||+|.|.+.     ...|.|+|||++.++++++||++.++++.  .+...+.|++|...++
T Consensus        67 ne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~  125 (134)
T cd00276          67 NEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPR  125 (134)
T ss_pred             eeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCC
Confidence            999999984     46899999999998899999999999998  5566788988876543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.66  E-value=6.7e-16  Score=140.29  Aligned_cols=107  Identities=25%  Similarity=0.418  Sum_probs=94.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecCCCCcceEEE
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIFGDENMGSA  458 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~~d~~iG~~  458 (726)
                      |.|+|++|+||+.+    .+||||++.+++...||+++ ++.||.|||+|.|.+.. ....|.|+|||++..++++||++
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~   77 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGV   77 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeE
Confidence            88999999999876    78999999999899999999 99999999999999776 47789999999987788999999


Q ss_pred             EEEccccccCC-----eeeeeeeccccc----cceeEEEEEE
Q 004872          459 RVNLEGLVEGS-----VRDIWVPLEKVN----TGELRLQIEA  491 (726)
Q Consensus       459 ~i~L~~l~~~~-----~~~~w~~L~~~~----~G~I~l~~~~  491 (726)
                      .++++++..+.     ....||+|.+..    +|+|.+++.|
T Consensus        78 ~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          78 CFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             EEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            99999987532     356999998754    5999999876

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.66  E-value=9.6e-16  Score=140.26  Aligned_cols=93  Identities=18%  Similarity=0.347  Sum_probs=80.8

Q ss_pred             ccEEEEEEEeecCCCCCCCC-CCCcccccccCCCCccccccCCCCcCcEEEEEEcc---EEeeeecCCCCCCcccceeEE
Q 004872          185 GGIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE---LTRRTDARPGSDPRWDSMFNM  260 (726)
Q Consensus       185 ~GvL~V~v~~A~~L~~~~~~-g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~---~~rTt~i~~t~nP~WnEtf~~  260 (726)
                      +|+|.|+|++|++|+..+.. |.+                      ||||+++++.   ..+|++++++.||.|||+|.|
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~----------------------dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~   58 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTV----------------------DPYVTFSISNRRELARTKVKKDTSNPVWNETKYI   58 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCC----------------------CCeEEEEECCCCcceEeeeecCCCCCcceEEEEE
Confidence            49999999999999965533 323                      9999999964   678899999999999999999


Q ss_pred             EEecCCceEEEEEEEeCCCCCCcceeEEEEEeceeccCCC
Q 004872          261 VLHEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS  300 (726)
Q Consensus       261 ~v~~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~  300 (726)
                      .+.+..+.|.|+|||.+.. .++++||.+.++|+++....
T Consensus        59 ~v~~~~~~l~~~v~d~~~~-~~d~~iG~~~~~l~~l~~~~   97 (124)
T cd04044          59 LVNSLTEPLNLTVYDFNDK-RKDKLIGTAEFDLSSLLQNP   97 (124)
T ss_pred             EeCCCCCEEEEEEEecCCC-CCCceeEEEEEEHHHhccCc
Confidence            9986688999999999986 78999999999999998643

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.66  E-value=7.3e-16  Score=136.58  Aligned_cols=98  Identities=22%  Similarity=0.376  Sum_probs=89.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCCCCcceEEE
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSA  458 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~iG~~  458 (726)
                      |.|+|++|++|+..+..+.+||||+++++++.++|+++ ++.||.|||.|.|.+.++ ...|.|+|||++.  +++||++
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~   79 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL   79 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence            88999999999998888999999999999999999999 999999999999998874 6789999999886  8899999


Q ss_pred             EEEccccccCC--eeeeeeecccc
Q 004872          459 RVNLEGLVEGS--VRDIWVPLEKV  480 (726)
Q Consensus       459 ~i~L~~l~~~~--~~~~w~~L~~~  480 (726)
                      .++|.++....  ..+.||+|.+.
T Consensus        80 ~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          80 TLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             EEEHHHhhccccceeeeeEecCCC
Confidence            99999998654  57899999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.66  E-value=4.3e-16  Score=139.52  Aligned_cols=92  Identities=18%  Similarity=0.360  Sum_probs=80.1

Q ss_pred             cEEEEEEEeecCCCCCCCC-CCCcccccccCCCCccccccCCCCcCcEEEEEEc----cEEeeeecCCCCCCcccceeEE
Q 004872          186 GIVYVRVISASKLSRSSLR-GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDARPGSDPRWDSMFNM  260 (726)
Q Consensus       186 GvL~V~v~~A~~L~~~~~~-g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g----~~~rTt~i~~t~nP~WnEtf~~  260 (726)
                      |+|+|+|++|++|+..+.. |.+                      ||||+|++.    ...+|+++++++||+|||+|.|
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~----------------------Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f   58 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSS----------------------DPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFV   58 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCC----------------------CccEEEEEccCCCccEeeeeECCCCCCccceeEEE
Confidence            8999999999999998866 554                      999999983    3578899999999999999999


Q ss_pred             EEecC----CceEEEEEEEeCCCCCCcceeEEEEEeceeccCCC
Q 004872          261 VLHEE----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDS  300 (726)
Q Consensus       261 ~v~~~----~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~  300 (726)
                      .+...    .+.|.|+|||+|.. .++|+||.+.+++.+|..++
T Consensus        59 ~~~~~~~~~~~~l~~~V~d~d~~-~~dd~lG~~~i~l~~l~~~~  101 (111)
T cd04041          59 LVTPDEVKAGERLSCRLWDSDRF-TADDRLGRVEIDLKELIEDR  101 (111)
T ss_pred             EeCchhccCCCEEEEEEEeCCCC-CCCCcceEEEEEHHHHhcCC
Confidence            87543    46899999999986 78999999999999998643

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.66  E-value=1.5e-15  Score=139.17  Aligned_cols=111  Identities=25%  Similarity=0.464  Sum_probs=95.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeccccCCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcceE
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTAHSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMG  456 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-~~~kT~~~~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~iG  456 (726)
                      .|.|+|++|+||+.+   +.+||||++.+++ +..||++.++.||.|||.|.|.+..+ ...+.|.|||++.. ++++||
T Consensus         5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG   81 (126)
T cd08400           5 SLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIA   81 (126)
T ss_pred             EEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEE
Confidence            699999999999874   4789999999976 45788866778999999999986554 35789999999888 899999


Q ss_pred             EEEEEccccccCCeeeeeeeccccc------cceeEEEEEEEE
Q 004872          457 SARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATR  493 (726)
Q Consensus       457 ~~~i~L~~l~~~~~~~~w~~L~~~~------~G~I~l~~~~~~  493 (726)
                      .+.++|.++..+.....||+|.+..      .|+|+++++|.+
T Consensus        82 ~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          82 EVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             EEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            9999999998887888999997642      499999999974

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.66  E-value=1.2e-15  Score=139.63  Aligned_cols=100  Identities=23%  Similarity=0.444  Sum_probs=90.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--C-CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G-KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g-~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  450 (726)
                      +.|.|+|++|+||+.++..|.+||||++++  + ...+||+++ ++.||.|||+|.|.+...   ...|.|+|||++.. 
T Consensus        16 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~   95 (124)
T cd08387          16 GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFS   95 (124)
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCC
Confidence            389999999999999998999999999999  3 557999999 999999999999997653   56899999999887 


Q ss_pred             CCcceEEEEEEccccccCCeeeeeeecc
Q 004872          451 GDENMGSARVNLEGLVEGSVRDIWVPLE  478 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~  478 (726)
                      ++++||++.++++++..+.....||+|.
T Consensus        96 ~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          96 RDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCceeEEEEEecccccCCCCcceEEECc
Confidence            7999999999999998777889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.66  E-value=5.9e-16  Score=141.66  Aligned_cols=102  Identities=24%  Similarity=0.446  Sum_probs=93.5

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeC-CCCCeeeeEEEEecC------CCeEEEEEEECCCCCC
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFK-TLNPQWHQTLEFPDD------GSPLTLHVRDHNALLA  582 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~-t~nP~wne~~~f~v~------~~~l~i~V~d~d~~~~  582 (726)
                      |.|+|+|++|++|+..+..+.+||||++++++..++|+++.+ +.||.|||+|.|.+.      ...|.|+|||++.+++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            689999999999999988899999999999999999999885 999999999999984      2579999999999999


Q ss_pred             CCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872          583 SSSIGDCVVEYQRLPPNQMADKWIPLQGV  611 (726)
Q Consensus       583 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  611 (726)
                      |++||++.+++.++..+...+.|+.|...
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            99999999999999887788999999863

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.66  E-value=1.3e-15  Score=139.31  Aligned_cols=100  Identities=21%  Similarity=0.337  Sum_probs=87.8

Q ss_pred             cEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeec
Q 004872          379 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEE  448 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~-~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~  448 (726)
                      +.|.|+|++|+||...+. .|.+||||++++.     ...+||+++ ++.||.|||+|.|.+..   ....|.|+|||++
T Consensus        15 ~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~   94 (125)
T cd04029          15 QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYD   94 (125)
T ss_pred             CeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence            379999999999988765 4889999999992     236899999 99999999999999755   2568999999999


Q ss_pred             CC-CCcceEEEEEEccccccCCeeeeeeecc
Q 004872          449 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE  478 (726)
Q Consensus       449 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~  478 (726)
                      .. ++++||++.+++.++........||+|.
T Consensus        95 ~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          95 RFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             CCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            87 8899999999999998888889999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.66  E-value=2.1e-15  Score=137.83  Aligned_cols=111  Identities=32%  Similarity=0.461  Sum_probs=97.0

Q ss_pred             ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-----CeEEEeEeeeCCCCCee
Q 004872          483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQW  557 (726)
Q Consensus       483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~w  557 (726)
                      |+|.+++.|.              +..+.|+|+|++|++|++.+..+.+||||++.+.     ....+|+++++++||.|
T Consensus         2 G~~~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~W   67 (123)
T cd04035           2 GTLEFTLLYD--------------PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEF   67 (123)
T ss_pred             cEEEEEEEEe--------------CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCc
Confidence            8999999988              5568999999999999999888999999999983     24689999999999999


Q ss_pred             eeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872          558 HQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL  608 (726)
Q Consensus       558 ne~~~f~-v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  608 (726)
                      ||+|.|. +.     ...|.|+|||++.+ ++++||++.++++++..++....|+.|
T Consensus        68 ne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~~  123 (123)
T cd04035          68 NETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNICL  123 (123)
T ss_pred             cceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence            9999996 32     46899999999988 899999999999999887766666543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.65  E-value=1.5e-15  Score=141.81  Aligned_cols=89  Identities=31%  Similarity=0.587  Sum_probs=83.2

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      |.|+|+|++|++|+..+. +.+||||++.+++++.+|+++++++||+|||+|.|.+.  ...|.|+|||++.+++|++||
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            789999999999998887 89999999999999999999999999999999999985  567999999999999999999


Q ss_pred             EEEEEccccCCC
Q 004872          588 DCVVEYQRLPPN  599 (726)
Q Consensus       588 ~~~i~l~~l~~~  599 (726)
                      ++.+++..+...
T Consensus        81 ~a~i~l~~l~~~   92 (145)
T cd04038          81 EAEIDLEPLVEA   92 (145)
T ss_pred             EEEEEHHHhhhh
Confidence            999999988654

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.65  E-value=7.1e-16  Score=141.38  Aligned_cols=108  Identities=29%  Similarity=0.353  Sum_probs=94.5

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEECC-eEEEeEeee-CCCCCeeeeEEEEecC-------CCeEEEEEEECCCCC
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIF-KTLNPQWHQTLEFPDD-------GSPLTLHVRDHNALL  581 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~-~t~nP~wne~~~f~v~-------~~~l~i~V~d~d~~~  581 (726)
                      .|+|+|++|++|+..+..+.+||||+|++++ ++++|+++. ++.||.|||.|.|.+.       ...|.|+|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            4799999999999998889999999999988 889999985 5899999999999984       368999999999988


Q ss_pred             CCCeeEEEEEEccccCCCCc-----eeeEEecC---CCCCeEEEE
Q 004872          582 ASSSIGDCVVEYQRLPPNQM-----ADKWIPLQ---GVRKGEIHV  618 (726)
Q Consensus       582 ~d~~lG~~~i~l~~l~~~~~-----~~~w~~L~---~~~~G~i~l  618 (726)
                      +|++||++.+++.++..+..     ...||+|.   |..+|+|++
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            99999999999999975543     47899996   456798874

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.65  E-value=1.3e-15  Score=138.70  Aligned_cols=110  Identities=25%  Similarity=0.480  Sum_probs=96.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceEE
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMGS  457 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG~  457 (726)
                      |.|+|++|++|..++..|.+||||++++++. .+||+++ ++.||.|||.|.|.+......|.|.|||++.. +|++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            8899999999999999999999999999654 5799999 99999999999999876668899999999988 8999999


Q ss_pred             EEEEccccccCC-eeeeeeeccccc-----cceeEEEEE
Q 004872          458 ARVNLEGLVEGS-VRDIWVPLEKVN-----TGELRLQIE  490 (726)
Q Consensus       458 ~~i~L~~l~~~~-~~~~w~~L~~~~-----~G~I~l~~~  490 (726)
                      +.+++.++.... ..+.|++|.+..     .|+|++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            999999887543 367999998643     689988764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.65  E-value=1.2e-15  Score=137.37  Aligned_cols=99  Identities=19%  Similarity=0.301  Sum_probs=86.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEE-C----C--eEeecccc-CCCCCceeeEEEEEeeCC----ceeEEEEEEeec
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQY-G----K--IVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEE  448 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~l-g----~--~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~~  448 (726)
                      |+|+|++|++|+.++ .|.+||||+|++ |    .  ++++|+++ ++.||+|||+|.|.+...    ...|.|.|||++
T Consensus         2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            899999999999887 599999999998 4    2  35789999 999999999999998742    457999999998


Q ss_pred             CC-CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872          449 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  480 (726)
Q Consensus       449 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  480 (726)
                      .. ++++||++.+++.++..++....|++|...
T Consensus        81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~  113 (120)
T cd08395          81 FARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR  113 (120)
T ss_pred             ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence            76 789999999999999988888899999763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.65  E-value=1.4e-15  Score=134.99  Aligned_cols=96  Identities=15%  Similarity=0.246  Sum_probs=82.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg----~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~  450 (726)
                      +.|.|+|++|+||+ .  .|.+||||++++.    ..+++|+++ +|.||+|||+|.|.+..   ....|.|.|||.|++
T Consensus        14 ~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drf   90 (118)
T cd08677          14 AELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRF   90 (118)
T ss_pred             CEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCC
Confidence            48999999999998 2  4679999999993    257899999 99999999999999765   367899999999999


Q ss_pred             -CCcceEEEEEEccccccCCeeeeeeec
Q 004872          451 -GDENMGSARVNLEGLVEGSVRDIWVPL  477 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L  477 (726)
                       ++++||++.++++++........|..|
T Consensus        91 s~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          91 SRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCCceEEEEEEccccccCCccccchhcC
Confidence             899999999999998666666678654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.64  E-value=2.3e-15  Score=136.57  Aligned_cols=107  Identities=29%  Similarity=0.370  Sum_probs=94.4

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEECC-eEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCee
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSI  586 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~l  586 (726)
                      |.|+|+|++|++|+..+..|.+||||++.+++ ...+|+++.++.||.|||+|.|++.  ...|.|+|||++.+++|++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            67999999999999999899999999999977 5789999999999999999999874  47899999999999999999


Q ss_pred             EEEEEEccccCCCCceeeEEecCCCCCeEEE
Q 004872          587 GDCVVEYQRLPPNQMADKWIPLQGVRKGEIH  617 (726)
Q Consensus       587 G~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~  617 (726)
                      |++.+++.++..+ ..+.||.|.+...+.+.
T Consensus        81 G~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~  110 (120)
T cd04045          81 GSVEINVSDLIKK-NEDGKYVEYDDEEERLK  110 (120)
T ss_pred             eEEEEeHHHhhCC-CCCceEEecCCCcceee
Confidence            9999999999776 55788888765555443

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.64  E-value=9.4e-17  Score=164.99  Aligned_cols=117  Identities=31%  Similarity=0.492  Sum_probs=103.5

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-----CeEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~  556 (726)
                      +|+|++.+...                ...|.|+|.+|+||.++|.+|.+||||++.+-     ..+++|++++.++||+
T Consensus       168 RGrl~l~~~~~----------------~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~  231 (683)
T KOG0696|consen  168 RGRLYLEAHIK----------------RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPV  231 (683)
T ss_pred             cceEEEEEEec----------------CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCcc
Confidence            69999988754                47899999999999999999999999999993     2578999999999999


Q ss_pred             eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCCCeE
Q 004872          557 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE  615 (726)
Q Consensus       557 wne~~~f~v~----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~  615 (726)
                      |||+|.|...    ...|.|+|||+|+.++++|+|...+.+++|... +.+.||.|-....||
T Consensus       232 wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLsqeEGE  293 (683)
T KOG0696|consen  232 WNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQEEGE  293 (683)
T ss_pred             ccceeEEecccccccceeEEEEecccccccccccceecccHHHHhhc-chhhHHHHhhhhcCc
Confidence            9999999973    578999999999999999999999999999754 578999997655564

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.64  E-value=2.4e-15  Score=137.72  Aligned_cols=99  Identities=22%  Similarity=0.340  Sum_probs=86.3

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecC
Q 004872          380 KINVTVVEGKDLMPKDKS-GKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  449 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  449 (726)
                      .|.|+|++|+||+.++.. |.+||||++++.     ..++||+++ ++.||+|||+|.|.+...   ...|.+.|||.+.
T Consensus        16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~   95 (128)
T cd08392          16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT   95 (128)
T ss_pred             EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence            899999999999998875 999999999992     347799999 999999999999997553   5789999999998


Q ss_pred             C-CCcceEEEEEEccccccC---Ceeeeeeecc
Q 004872          450 F-GDENMGSARVNLEGLVEG---SVRDIWVPLE  478 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~~~---~~~~~w~~L~  478 (726)
                      . ++++||++.|+|.++...   .....||+|.
T Consensus        96 ~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          96 LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            7 889999999999998543   3678999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.64  E-value=3.3e-15  Score=135.70  Aligned_cols=111  Identities=24%  Similarity=0.404  Sum_probs=98.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceE
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  456 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG  456 (726)
                      |.|.|+|++|++|+..+..+.+||||++++++..++|+++ ++.||.|||+|.|.+.+....+.|+|||++.. ++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            4799999999999999988999999999998888999999 99999999999999766578899999999886 889999


Q ss_pred             EEEEEccccccCCeeeeeeecccc-----ccceeEEEEEE
Q 004872          457 SARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA  491 (726)
Q Consensus       457 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~I~l~~~~  491 (726)
                      ++.+++.++..+.  ..||+|...     ..|+|.+++++
T Consensus        81 ~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          81 KVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             EEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence            9999999986543  579999753     36999988865

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.64  E-value=1.3e-15  Score=143.01  Aligned_cols=100  Identities=30%  Similarity=0.488  Sum_probs=88.9

Q ss_pred             CCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----------------------------eEEEeEeeeCCCC
Q 004872          504 NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----------------------------LKKRTKVIFKTLN  554 (726)
Q Consensus       504 ~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----------------------------~~~kT~v~~~t~n  554 (726)
                      ...++.+.|+|+|++|++|++.|..|.+||||++.+..                             ..++|+++.+++|
T Consensus        22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln  101 (153)
T cd08676          22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN  101 (153)
T ss_pred             hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence            35688999999999999999999999999999999853                             1368999999999


Q ss_pred             CeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872          555 PQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL  608 (726)
Q Consensus       555 P~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  608 (726)
                      |.|||+|.|.+.   ...|.|+|||++    +++||++.++++++.. ...+.||+|
T Consensus       102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            999999999984   468999999998    8899999999999984 457999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.64  E-value=3.3e-15  Score=139.44  Aligned_cols=93  Identities=14%  Similarity=0.329  Sum_probs=82.9

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc-cEEeeeecCCCCCCcccceeEEEEe
Q 004872          185 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMVLH  263 (726)
Q Consensus       185 ~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g-~~~rTt~i~~t~nP~WnEtf~~~v~  263 (726)
                      .|.|+|+|++|++|+..+. +++                      ||||+++++ ...+|++++++.||+|||+|.|.+.
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~s----------------------DPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~   57 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSS----------------------DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVP   57 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCc----------------------CcEEEEEECCEEEEeeeEcCCCCCeecccEEEEec
Confidence            4899999999999998876 544                      999999997 4577888999999999999999998


Q ss_pred             cCCceEEEEEEEeCCCCCCcceeEEEEEeceeccCCCc
Q 004872          264 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDST  301 (726)
Q Consensus       264 ~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~~  301 (726)
                      +..+.|.|+|||+|.+ .+|++||.+.++++++.....
T Consensus        58 ~~~~~l~~~V~D~d~~-~~dd~iG~a~i~l~~l~~~~~   94 (145)
T cd04038          58 NPMAPLKLEVFDKDTF-SKDDSMGEAEIDLEPLVEAAK   94 (145)
T ss_pred             CCCCEEEEEEEECCCC-CCCCEEEEEEEEHHHhhhhhh
Confidence            8888999999999987 789999999999999886543

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.64  E-value=1.6e-15  Score=140.67  Aligned_cols=111  Identities=28%  Similarity=0.374  Sum_probs=97.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-C
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G  451 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~-------~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~  451 (726)
                      |.|+|++|++|+.++..|.+||||++++++.       .++|+++ ++.||.|||+|.|.+......|.|+|||++.. +
T Consensus         2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~   81 (133)
T cd04033           2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTR   81 (133)
T ss_pred             EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCC
Confidence            8999999999999998899999999999543       5799999 99999999999999876677899999999988 7


Q ss_pred             CcceEEEEEEccccccCC------eeeeeeecccc-----ccceeEEEEEE
Q 004872          452 DENMGSARVNLEGLVEGS------VRDIWVPLEKV-----NTGELRLQIEA  491 (726)
Q Consensus       452 d~~iG~~~i~L~~l~~~~------~~~~w~~L~~~-----~~G~I~l~~~~  491 (726)
                      +++||++.+++.++....      ....||+|++.     ..|+|++++.|
T Consensus        82 ~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          82 DDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence            899999999999988643      34699999853     36999999987

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.64  E-value=2.4e-15  Score=137.38  Aligned_cols=99  Identities=25%  Similarity=0.514  Sum_probs=90.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcceEE
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDENMGS  457 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~iG~  457 (726)
                      |+|+|++|++|..++..+.+||||++++++..++|+++ ++.||.|||+|.|.+... ...|.|+|||++.. ++++||.
T Consensus         2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~   81 (123)
T cd04025           2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGK   81 (123)
T ss_pred             EEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEE
Confidence            89999999999999888899999999999899999999 999999999999998765 57899999999887 7899999


Q ss_pred             EEEEccccccCCeeeeeeeccc
Q 004872          458 ARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       458 ~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                      +.+++.++..+.....||.|.+
T Consensus        82 ~~~~l~~l~~~~~~~~w~~L~~  103 (123)
T cd04025          82 VVFSIQTLQQAKQEEGWFRLLP  103 (123)
T ss_pred             EEEEHHHcccCCCCCCEEECCC
Confidence            9999999987666789999975

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.63  E-value=2.1e-15  Score=137.20  Aligned_cols=93  Identities=29%  Similarity=0.483  Sum_probs=83.7

Q ss_pred             CCCCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEec----CCCeEEEEEEECCCC
Q 004872          505 IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD----DGSPLTLHVRDHNAL  580 (726)
Q Consensus       505 ~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v----~~~~l~i~V~d~d~~  580 (726)
                      .....+.|+|+|++|++|+. +..+.+||||+|++++++++|+++++++||+|||+|.|..    ....|.|+|||+|.+
T Consensus        23 ~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~  101 (127)
T cd04032          23 TRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNG  101 (127)
T ss_pred             CcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCC
Confidence            45667999999999999984 6778899999999999999999999999999999999973    267899999999999


Q ss_pred             CCCCeeEEEEEEccccCC
Q 004872          581 LASSSIGDCVVEYQRLPP  598 (726)
Q Consensus       581 ~~d~~lG~~~i~l~~l~~  598 (726)
                      ++|++||++.++|.....
T Consensus       102 s~dd~IG~~~i~l~~~~~  119 (127)
T cd04032         102 WDDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             CCCCeeEEEEEEecCCce
Confidence            999999999999986653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.63  E-value=2.6e-15  Score=135.90  Aligned_cols=98  Identities=27%  Similarity=0.461  Sum_probs=85.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC--ceeEEEEEEeecCC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~  450 (726)
                      +.|.|+|++|+||+.++ .|.+||||++++.     ...+||+++ ++.||.|||+|.|.+...  ...+.|.|||++..
T Consensus        12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~   90 (119)
T cd08685          12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK   90 (119)
T ss_pred             CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence            48999999999999988 8899999999993     247799999 999999999999997653  45789999999876


Q ss_pred             --CCcceEEEEEEccccccCCeeeeeeec
Q 004872          451 --GDENMGSARVNLEGLVEGSVRDIWVPL  477 (726)
Q Consensus       451 --~d~~iG~~~i~L~~l~~~~~~~~w~~L  477 (726)
                        ++++||.+.+++.++..+.....||.|
T Consensus        91 ~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          91 SRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             cCCCEEEEEEEecHHHhccCccccceEeC
Confidence              478999999999999877778899976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.63  E-value=5.1e-15  Score=135.47  Aligned_cols=99  Identities=28%  Similarity=0.445  Sum_probs=89.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-C
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-G  451 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg---~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~  451 (726)
                      .|.|+|++|+||+.++..+.+||||++++.   ...++|+++ ++.||.|||.|.|.+...   ...|.|+|||++.. +
T Consensus        17 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~   96 (124)
T cd08385          17 QLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSK   96 (124)
T ss_pred             EEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCC
Confidence            799999999999999888999999999983   357899999 999999999999997652   56899999999988 8


Q ss_pred             CcceEEEEEEccccccCCeeeeeeecc
Q 004872          452 DENMGSARVNLEGLVEGSVRDIWVPLE  478 (726)
Q Consensus       452 d~~iG~~~i~L~~l~~~~~~~~w~~L~  478 (726)
                      +++||++.+++.++..+.....|++|+
T Consensus        97 ~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          97 HDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CceeEEEEEecCcccCCCCcceEEEcc
Confidence            899999999999998777888999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.63  E-value=2.2e-15  Score=134.93  Aligned_cols=98  Identities=26%  Similarity=0.440  Sum_probs=86.1

Q ss_pred             ccCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEccccCC-CC
Q 004872          526 DLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP-NQ  600 (726)
Q Consensus       526 d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~-~~  600 (726)
                      ..+|.+||||+|.++++ ..+|++++++.||+|||.|.|.+.   ...|.|+|+|++.+ +|++||++.++|+++.. ..
T Consensus         8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~   86 (111)
T cd04052           8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS   86 (111)
T ss_pred             ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh
Confidence            35789999999999875 679999999999999999999985   36699999999998 89999999999998843 44


Q ss_pred             ceeeEEecCCCCCeEEEEEEEEEec
Q 004872          601 MADKWIPLQGVRKGEIHVLITRKVP  625 (726)
Q Consensus       601 ~~~~w~~L~~~~~G~i~l~l~~~~p  625 (726)
                      ....|++|.+...|+|++++.| .|
T Consensus        87 ~~~~w~~L~~~~~G~i~~~~~~-~p  110 (111)
T cd04052          87 VGQQWFPLSGNGQGRIRISALW-KP  110 (111)
T ss_pred             ccceeEECCCCCCCEEEEEEEE-ec
Confidence            5689999998889999999998 44

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.63  E-value=4.2e-15  Score=137.59  Aligned_cols=111  Identities=27%  Similarity=0.552  Sum_probs=97.4

Q ss_pred             cEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEe
Q 004872          379 RKINVTVVEGKDLMPKDKS----------GKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYN  446 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~----------g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d  446 (726)
                      |.|+|+|++|++|...+..          +.+||||++.++++ ..+|+++ ++.||.|||+|.|.+. ....+.|.|||
T Consensus         4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d   82 (132)
T cd04014           4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFH   82 (132)
T ss_pred             eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEe
Confidence            4899999999999887752          67999999999765 5799999 9999999999999975 55789999999


Q ss_pred             ecCC-CCcceEEEEEEcccccc--CCeeeeeeeccccccceeEEEEEEE
Q 004872          447 EEIF-GDENMGSARVNLEGLVE--GSVRDIWVPLEKVNTGELRLQIEAT  492 (726)
Q Consensus       447 ~~~~-~d~~iG~~~i~L~~l~~--~~~~~~w~~L~~~~~G~I~l~~~~~  492 (726)
                      ++.. .+++||++.++|.++..  +.....|++|.+  .|+|+++++|.
T Consensus        83 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~l~l~~~~~  129 (132)
T cd04014          83 DAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP--QGKLHVKIELK  129 (132)
T ss_pred             CCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC--CcEEEEEEEEe
Confidence            8877 78999999999999987  456789999984  69999999987

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.63  E-value=2.1e-15  Score=140.11  Aligned_cols=99  Identities=27%  Similarity=0.391  Sum_probs=89.9

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEEC----CeEEEeEeeeCCCCCeeeeEEEEecCC------------------Ce
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYG----DLKKRTKVIFKTLNPQWHQTLEFPDDG------------------SP  569 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~v~~~t~nP~wne~~~f~v~~------------------~~  569 (726)
                      |+|.|++|++|+.. ..|.+||||+++++    ..+++|+++.++.||.|||+|.|++..                  ..
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999988 78899999999998    678999999999999999999999742                  47


Q ss_pred             EEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872          570 LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  611 (726)
Q Consensus       570 l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  611 (726)
                      |.|+|||++.++++++||++.+++.++........|++|+..
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            999999999988999999999999999877778999999853

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.62  E-value=5e-15  Score=135.73  Aligned_cols=99  Identities=28%  Similarity=0.484  Sum_probs=85.4

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeec
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE  448 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~  448 (726)
                      +.|.|+|++|++|...+..+.+||||++++.     ..++||+++ ++.||.|||+|.|.+..    ....|.|+|||++
T Consensus        16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~   95 (125)
T cd04031          16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYD   95 (125)
T ss_pred             CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCC
Confidence            3899999999999998888999999999994     258899999 99999999999998644    3568999999999


Q ss_pred             CC-CCcceEEEEEEccccccCCeeeeeeecc
Q 004872          449 IF-GDENMGSARVNLEGLVEGSVRDIWVPLE  478 (726)
Q Consensus       449 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~  478 (726)
                      .. ++++||++.++|.+.. ......||+|+
T Consensus        96 ~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~  125 (125)
T cd04031          96 RDGENDFLGEVVIDLADAL-LDDEPHWYPLQ  125 (125)
T ss_pred             CCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence            87 7899999999999943 33346899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.62  E-value=6.6e-15  Score=136.71  Aligned_cols=115  Identities=24%  Similarity=0.428  Sum_probs=96.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC----------CceeEEEEEEeec
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG----------GGECLMVKCYNEE  448 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~----------~~~~l~i~V~d~~  448 (726)
                      .|+|+|++|++|+.++..|.+||||++++++..++|+++ ++.||.|||.|.|.+..          ....+.|+|||++
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            699999999999999999999999999999999999999 99999999999997432          1246999999999


Q ss_pred             CC-CCcceEEEEE-Ecccccc---CCeeeeeeecccc--ccceeEEEEEEEEe
Q 004872          449 IF-GDENMGSARV-NLEGLVE---GSVRDIWVPLEKV--NTGELRLQIEATRV  494 (726)
Q Consensus       449 ~~-~d~~iG~~~i-~L~~l~~---~~~~~~w~~L~~~--~~G~I~l~~~~~~~  494 (726)
                      .. +|++||++.+ ++..+..   .....+|++|...  ..|+|.+++++.++
T Consensus        82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~  134 (135)
T cd04017          82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV  134 (135)
T ss_pred             CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence            87 7899999987 4433332   3467799999853  46999999998864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.62  E-value=7.9e-15  Score=135.40  Aligned_cols=109  Identities=24%  Similarity=0.317  Sum_probs=91.4

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEECC-------------eEEEeEeeeCCCCCee-eeEEEEec-CCCeEEEEEE
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYGD-------------LKKRTKVIFKTLNPQW-HQTLEFPD-DGSPLTLHVR  575 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-------------~~~kT~v~~~t~nP~w-ne~~~f~v-~~~~l~i~V~  575 (726)
                      .+.|++++|+||+ .+..|.+||||++++..             ++++|+++++++||+| ||+|.|.+ .+..|.++||
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~   80 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVK   80 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEE
Confidence            3678999999998 67789999999999942             3689999999999999 99999998 4678999999


Q ss_pred             ECCCCCC---CCeeEEEEEEccccCCC---CceeeEEecCC-----CCCeEEEEEE
Q 004872          576 DHNALLA---SSSIGDCVVEYQRLPPN---QMADKWIPLQG-----VRKGEIHVLI  620 (726)
Q Consensus       576 d~d~~~~---d~~lG~~~i~l~~l~~~---~~~~~w~~L~~-----~~~G~i~l~l  620 (726)
                      |++..++   +++||++.+++.++..+   .....|++|+.     ..+|+|.+.+
T Consensus        81 D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          81 DKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             ecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            9876443   79999999999999644   34778999973     3459888875

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.62  E-value=4.8e-15  Score=133.75  Aligned_cols=106  Identities=29%  Similarity=0.507  Sum_probs=93.7

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEECC-eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      |+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.   ...+.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            578999999999998889999999999976 4579999999999999999999984   467999999999999999999


Q ss_pred             EEEEEccccCCCCceeeEEecCCC---CCeEEE
Q 004872          588 DCVVEYQRLPPNQMADKWIPLQGV---RKGEIH  617 (726)
Q Consensus       588 ~~~i~l~~l~~~~~~~~w~~L~~~---~~G~i~  617 (726)
                      ++.+++.++..+.....|++|.+.   ..|.+.
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~  113 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF  113 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence            999999999888889999999753   335543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.61  E-value=3.7e-15  Score=139.54  Aligned_cols=98  Identities=28%  Similarity=0.434  Sum_probs=85.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeecccc-CCCCCceeeEEEEEee---------------C-Cce
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEI---------------G-GGE  438 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~-~t~nP~wne~f~f~v~---------------~-~~~  438 (726)
                      |.|+|++|+||..  .+|.+||||+|++..     ..++|+++ ++.||+|||+|.|.+.               + ...
T Consensus         2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            8999999999987  468999999999943     57899999 9999999999999984               1 135


Q ss_pred             eEEEEEEeecCC-CCcceEEEEEEccccccC-Ceeeeeeecccc
Q 004872          439 CLMVKCYNEEIF-GDENMGSARVNLEGLVEG-SVRDIWVPLEKV  480 (726)
Q Consensus       439 ~l~i~V~d~~~~-~d~~iG~~~i~L~~l~~~-~~~~~w~~L~~~  480 (726)
                      .|.|.|||++.. ++++||++.|++.++..+ .....||+|.+.
T Consensus        80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~  123 (148)
T cd04010          80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR  123 (148)
T ss_pred             EEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence            799999999987 899999999999999876 567899999864

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.61  E-value=1.3e-14  Score=133.11  Aligned_cols=111  Identities=18%  Similarity=0.262  Sum_probs=95.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcceEEE
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSA  458 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~~  458 (726)
                      +|+|+|++|++|...+..|.+||||++.++++.++|+++ ++.||.|||.|.|...+....|.|+|||++..+|++||.+
T Consensus         4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~   83 (126)
T cd04046           4 VTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQA   83 (126)
T ss_pred             EEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEE
Confidence            799999999999998888999999999999999999999 9999999999999877778899999999987788999999


Q ss_pred             EEEccccccCCeeeeeeeccc-------cccceeEEEEEEE
Q 004872          459 RVNLEGLVEGSVRDIWVPLEK-------VNTGELRLQIEAT  492 (726)
Q Consensus       459 ~i~L~~l~~~~~~~~w~~L~~-------~~~G~I~l~~~~~  492 (726)
                      .+++.++.  .....|++|..       ...|+|.+++...
T Consensus        84 ~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~  122 (126)
T cd04046          84 TLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSS  122 (126)
T ss_pred             EEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence            99998864  33457788842       2357777777654

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.61  E-value=1.4e-14  Score=132.95  Aligned_cols=99  Identities=24%  Similarity=0.317  Sum_probs=85.1

Q ss_pred             EEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeecCC
Q 004872          380 KINVTVVEGKDLMPKDKS-GKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF  450 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg---~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~~  450 (726)
                      .|.|+|++|+||+..+.. +.+||||++++.   ++++||+++ ++.||.|||+|.|...+    ....|.|+|||++..
T Consensus        17 ~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~   96 (128)
T cd08388          17 ALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRY   96 (128)
T ss_pred             EEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCC
Confidence            899999999999988876 899999999983   457899999 99999999999995333    245799999999888


Q ss_pred             -CCcceEEEEEEccccccC--Ceeeeeeecc
Q 004872          451 -GDENMGSARVNLEGLVEG--SVRDIWVPLE  478 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~--~~~~~w~~L~  478 (726)
                       ++++||++.++|.++...  .....|.+|+
T Consensus        97 ~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~  127 (128)
T cd08388          97 SRDDVIGEVVCPLAGADLLNEGELLVSREIQ  127 (128)
T ss_pred             CCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence             899999999999998654  4677898876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.60  E-value=1e-14  Score=133.39  Aligned_cols=110  Identities=25%  Similarity=0.416  Sum_probs=92.7

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCCeeE
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      .+|+|+|.+|+ |...+..+.+||||+++++++ ..+|+++++++||+|||+|.|.+. ...|.|+|||++..+.|++||
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~iG   80 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHTLKADVLLG   80 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCCCCCCcEEE
Confidence            46899999998 655555889999999999887 899999999999999999999984 678999999999999999999


Q ss_pred             EEEEEccccCCCCc-----eeeEEecCC------CCCeEEEEEE
Q 004872          588 DCVVEYQRLPPNQM-----ADKWIPLQG------VRKGEIHVLI  620 (726)
Q Consensus       588 ~~~i~l~~l~~~~~-----~~~w~~L~~------~~~G~i~l~l  620 (726)
                      ++.++|.++.....     ...|++|..      ...|+|.+.+
T Consensus        81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          81 EASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            99999998864321     345899852      3469888775

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.60  E-value=4.2e-15  Score=135.23  Aligned_cols=91  Identities=22%  Similarity=0.318  Sum_probs=77.9

Q ss_pred             ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc-cEEeeeecCCCCCCcccceeEEE
Q 004872          183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMV  261 (726)
Q Consensus       183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g-~~~rTt~i~~t~nP~WnEtf~~~  261 (726)
                      ...|.|+|+|++|++|+. +..|.+                      ||||+|+++ ...||++++++.||+|||+|.|.
T Consensus        25 ~~~~~L~V~V~~A~~L~~-d~~g~~----------------------DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~   81 (127)
T cd04032          25 RGLATLTVTVLRATGLWG-DYFTST----------------------DGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFG   81 (127)
T ss_pred             CCcEEEEEEEEECCCCCc-CcCCCC----------------------CeEEEEEECCccccCceecCCCCCcCCCEEEEe
Confidence            466999999999999984 544543                      999999996 56788899999999999999997


Q ss_pred             Eec--CCceEEEEEEEeCCCCCCcceeEEEEEeceecc
Q 004872          262 LHE--ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  297 (726)
Q Consensus       262 v~~--~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~  297 (726)
                      ...  ..+.|.|+|||+|.. +++++||++.++|....
T Consensus        82 ~~~~~~~~~L~v~V~D~d~~-s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          82 SVELSPGGKLRFEVWDRDNG-WDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             cccCCCCCEEEEEEEeCCCC-CCCCeeEEEEEEecCCc
Confidence            433  378999999999986 79999999999998655

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.60  E-value=1.1e-14  Score=138.99  Aligned_cols=104  Identities=24%  Similarity=0.374  Sum_probs=90.7

Q ss_pred             CccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEEeeCC----ceeEEEEEEe
Q 004872          377 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYN  446 (726)
Q Consensus       377 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d  446 (726)
                      +.+.|.|+|++|+||+..+..+.+||||++++     +...+||+++ ++.||.|||.|.|.+...    ...|.|+|||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            44589999999999999998899999999988     2468999999 999999999999985432    4579999999


Q ss_pred             ecCC-CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872          447 EEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  480 (726)
Q Consensus       447 ~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  480 (726)
                      ++.. ++++||++.+++.++........|+.+.+.
T Consensus       105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~  139 (162)
T cd04020         105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGE  139 (162)
T ss_pred             CCCCCCCceEEEEEEeCCccccCCCccccccCChH
Confidence            9988 799999999999999877777899988763

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.60  E-value=9.9e-15  Score=133.29  Aligned_cols=99  Identities=27%  Similarity=0.408  Sum_probs=87.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEE-eeC---CceeEEEEEEeecCC-
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEEIF-  450 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~-v~~---~~~~l~i~V~d~~~~-  450 (726)
                      .|.|+|++|+||+..+..|.+||||++.+   .+..+||++. + .||+|||+|.|. +..   ....|.|+|||++.. 
T Consensus        17 ~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~   95 (124)
T cd08389          17 KLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMR   95 (124)
T ss_pred             EEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcc
Confidence            79999999999999998899999999887   3568899988 7 999999999998 443   367899999999988 


Q ss_pred             CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872          451 GDENMGSARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                      ++++||++.++|+++..+.....||+|++
T Consensus        96 ~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          96 KERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             cCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            79999999999999988778899999873

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.60  E-value=5.9e-15  Score=133.86  Aligned_cols=91  Identities=14%  Similarity=0.241  Sum_probs=81.4

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEcc--EEeeeecCCCCCCcccceeEEEEe
Q 004872          186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE--LTRRTDARPGSDPRWDSMFNMVLH  263 (726)
Q Consensus       186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~--~~rTt~i~~t~nP~WnEtf~~~v~  263 (726)
                      |+|+|+|++|++|+..+..|.+                      ||||+|.++.  ..+|++++++.||+|||+|.|.+.
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~----------------------DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~   58 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKI----------------------DPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT   58 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCc----------------------CCEEEEEECCEEeeceeEECCCcCCccCceEEEEec
Confidence            8999999999999998876654                      9999999964  467888899999999999999987


Q ss_pred             cCCceEEEEEEEeCCCCCCcceeEEEEEeceeccCC
Q 004872          264 EETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  299 (726)
Q Consensus       264 ~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~  299 (726)
                      ...+.|.|+|||++.. .++++||++.++|.++...
T Consensus        59 ~~~~~L~v~v~d~~~~-~~d~~IG~~~~~l~~l~~~   93 (120)
T cd04045          59 SPNQKITLEVMDYEKV-GKDRSLGSVEINVSDLIKK   93 (120)
T ss_pred             CCCCEEEEEEEECCCC-CCCCeeeEEEEeHHHhhCC
Confidence            7778999999999986 7889999999999999864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.60  E-value=8.7e-15  Score=131.18  Aligned_cols=97  Identities=20%  Similarity=0.299  Sum_probs=85.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcceEE
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGS  457 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~  457 (726)
                      +.|.|+|++|++|..++   ..||||+|.+|+++.+|++. + .||.|||.|.|.+.+....|.|+|||++...|++||+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~   77 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGT   77 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEE
Confidence            37999999999997643   46899999999999999999 6 5999999999998777667999999998779999999


Q ss_pred             EEEEccccccCCe--eeeeeeccc
Q 004872          458 ARVNLEGLVEGSV--RDIWVPLEK  479 (726)
Q Consensus       458 ~~i~L~~l~~~~~--~~~w~~L~~  479 (726)
                      +.++|.++..+..  ...||+|..
T Consensus        78 v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          78 VWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             EEEEhHHcccCCCCCCCccEecCh
Confidence            9999999986553  479999985

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.60  E-value=1.5e-14  Score=133.01  Aligned_cols=100  Identities=27%  Similarity=0.337  Sum_probs=88.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  449 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  449 (726)
                      +.|.|+|++|+||+..+..+.+||||++++.     ...+||+++ ++.||.|||+|.|.+...   ...|.|.|||.+.
T Consensus        16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~   95 (127)
T cd04030          16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS   95 (127)
T ss_pred             CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc
Confidence            3799999999999999988999999999993     468999999 999999999999997543   4689999999986


Q ss_pred             C---CCcceEEEEEEccccccCCeeeeeeecc
Q 004872          450 F---GDENMGSARVNLEGLVEGSVRDIWVPLE  478 (726)
Q Consensus       450 ~---~d~~iG~~~i~L~~l~~~~~~~~w~~L~  478 (726)
                      .   ++++||++.+++.++..+.....||+|.
T Consensus        96 ~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          96 FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             ccCCCCceEEEEEEecccccccCCccceEECc
Confidence            3   7899999999999998777788999884

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.59  E-value=1.6e-14  Score=132.45  Aligned_cols=100  Identities=21%  Similarity=0.414  Sum_probs=88.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeecCC-
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF-  450 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~~-  450 (726)
                      .|.|+|++|+||+..+..+.+||||++++   ++..++|+++ ++.||.|||+|.|.+..    ....|.++|||++.. 
T Consensus        17 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~   96 (125)
T cd08386          17 TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFS   96 (125)
T ss_pred             EEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCc
Confidence            79999999999999988899999999999   4568899999 99999999999997533    245799999999988 


Q ss_pred             CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872          451 GDENMGSARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                      ++++||++.++++++..+.....|++|.+
T Consensus        97 ~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          97 RNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             CCcEeeEEEEecccccCCCCcceEEecCC
Confidence            78999999999999987777889999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.59  E-value=6.4e-15  Score=133.80  Aligned_cols=99  Identities=17%  Similarity=0.264  Sum_probs=87.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--C----CeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeec
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G----KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEE  448 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g----~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~  448 (726)
                      +.|.|+|++|+||...+..+.+||||++++  +    +..+||++. ++.||+|||+|.|.+..   ....|.|.||+.+
T Consensus        14 ~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~   93 (124)
T cd08680          14 SSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVG   93 (124)
T ss_pred             CEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCC
Confidence            489999999999999888899999999999  2    248999999 99999999999999765   3679999999998


Q ss_pred             CC-CCcceEEEEEEccccccCC-eeeeeeec
Q 004872          449 IF-GDENMGSARVNLEGLVEGS-VRDIWVPL  477 (726)
Q Consensus       449 ~~-~d~~iG~~~i~L~~l~~~~-~~~~w~~L  477 (726)
                      .. ++++||.+.++|+++.... ....||+|
T Consensus        94 ~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          94 PDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             CCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            87 8899999999999996543 56789976

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.59  E-value=6.6e-15  Score=131.59  Aligned_cols=99  Identities=24%  Similarity=0.478  Sum_probs=88.2

Q ss_pred             EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEeecccc-CCCCCce-eeEEEEEeeCC---ceeEEEEEEeecCC-CCc
Q 004872          381 INVTVVEGKDLMPKDK-SGKCDPYVKLQYGKIVQRTRTA-HSPNHVW-NQKFELDEIGG---GECLMVKCYNEEIF-GDE  453 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~-~g~~dpyv~v~lg~~~~kT~~~-~t~nP~w-ne~f~f~v~~~---~~~l~i~V~d~~~~-~d~  453 (726)
                      |.|+|++|++|+.++. .|.+||||++++++..+||+++ ++.||.| ||.|.|.+...   ...|.|+|||++.. +++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            5799999999998874 6889999999999899999999 9999999 99999997663   46899999999987 789


Q ss_pred             ceEEEEEEcccccc---CCeeeeeeeccc
Q 004872          454 NMGSARVNLEGLVE---GSVRDIWVPLEK  479 (726)
Q Consensus       454 ~iG~~~i~L~~l~~---~~~~~~w~~L~~  479 (726)
                      +||++.+++.++..   +...+.||+|.+
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            99999999999987   345789999864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.59  E-value=1.4e-14  Score=133.02  Aligned_cols=108  Identities=37%  Similarity=0.663  Sum_probs=93.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecC---------
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEI---------  449 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~---------  449 (726)
                      .|.|+|++|++|+..+..|.+||||++++++..++|+++ ++.||.|||.|.|.+..+...|.|+|||++.         
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            589999999999999988999999999999889999999 9999999999999886666789999999874         


Q ss_pred             ---CCCcceEEEEEEccccccCCeeeeeeeccccc-----cceeEEEE
Q 004872          450 ---FGDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQI  489 (726)
Q Consensus       450 ---~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~  489 (726)
                         ..+++||.+.+++.++.  .....||+|.+..     +|+|.+++
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             ccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence               15899999999999874  3346999998632     57777753

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.59  E-value=3.1e-14  Score=132.03  Aligned_cols=109  Identities=21%  Similarity=0.304  Sum_probs=93.8

Q ss_pred             ceEEEEEEEEeecCcccccCCCCccEEEEEECCeE-EEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCC-CC---
Q 004872          509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNA-LL---  581 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~-~~---  581 (726)
                      ...|.|.|++|++|++++     ||||.+.+++++ .||+++.++.||.|+|.|.|...  -..+.|.|++.+. .+   
T Consensus        10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~   84 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD   84 (146)
T ss_pred             EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence            467999999999999864     899999999987 59999999999999999999974  3679999986553 22   


Q ss_pred             CCCeeEEEEEEccccCCCCceeeEEecCC---C----------CCeEEEEEEEE
Q 004872          582 ASSSIGDCVVEYQRLPPNQMADKWIPLQG---V----------RKGEIHVLITR  622 (726)
Q Consensus       582 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~---~----------~~G~i~l~l~~  622 (726)
                      ++.+||.+.||+.++..+...++||+|.+   .          ..+.|++++.|
T Consensus        85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf  138 (146)
T cd04013          85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARY  138 (146)
T ss_pred             CCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEE
Confidence            57899999999999999999999999963   1          23799999998

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.58  E-value=4.8e-15  Score=139.15  Aligned_cols=105  Identities=12%  Similarity=0.209  Sum_probs=85.9

Q ss_pred             CCceeeecCcc---cc---ccccccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEcc
Q 004872          166 EPRRRCYSLPA---VD---LRKKAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE  239 (726)
Q Consensus       166 ~P~~~~~~l~~---~~---~~~~~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~  239 (726)
                      +|+.+.++..+   +.   .....+.+.|.|+|++|++|...|..|.+                      ||||+|.++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~vi~a~~L~~~d~~g~~----------------------DPyv~v~l~~   59 (153)
T cd08676           2 AQQAFGVSPEEHEALLERVREAEPPIFVLKVTVIEAKGLLAKDVNGFS----------------------DPYCMLGIVP   59 (153)
T ss_pred             hHHhhCCCHHHHHHHHHHHHhcCCCeEEEEEEEEeccCCcccCCCCCC----------------------CceEEEEEcc
Confidence            46664444432   22   24557889999999999999999877765                      9999999852


Q ss_pred             ------------------------------EEeeeecCCCCCCcccceeEEEEecC-CceEEEEEEEeCCCCCCcceeEE
Q 004872          240 ------------------------------LTRRTDARPGSDPRWDSMFNMVLHEE-TGTVRFNLYECIPGHVKYDYLTS  288 (726)
Q Consensus       240 ------------------------------~~rTt~i~~t~nP~WnEtf~~~v~~~-~~~L~~~V~D~d~~~~~dd~lG~  288 (726)
                                                    ..+|++++++.||+|||+|.|.+... .+.|.|+|||++     +++||.
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~  134 (153)
T cd08676          60 ASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD-----DDFLGC  134 (153)
T ss_pred             cccccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC-----CCeEEE
Confidence                                          25788889999999999999999765 679999999997     689999


Q ss_pred             EEEeceecc
Q 004872          289 CEVKMKYVA  297 (726)
Q Consensus       289 ~~i~L~~l~  297 (726)
                      +.+++.++.
T Consensus       135 v~i~l~~l~  143 (153)
T cd08676         135 VNIPLKDLP  143 (153)
T ss_pred             EEEEHHHhC
Confidence            999999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.58  E-value=1e-14  Score=133.27  Aligned_cols=111  Identities=27%  Similarity=0.352  Sum_probs=89.2

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEECCeE--EEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYGDLK--KRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS  585 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~--~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~  585 (726)
                      .|+|.|++|++|++.+..|.+||||++++++.+  .+|+++++++||+|||+|.|.+.   ...|.|+|||+|.+++|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            378999999999999999999999999998864  57888999999999999999863   5689999999999999999


Q ss_pred             eEEEEEEccccCCCCceeeEEecCC--CCCeEEEEEEEE
Q 004872          586 IGDCVVEYQRLPPNQMADKWIPLQG--VRKGEIHVLITR  622 (726)
Q Consensus       586 lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~i~l~l~~  622 (726)
                      ||++.+++++.... ..-.|..+..  ...|.++..-++
T Consensus        81 iG~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  118 (124)
T cd04037          81 IGETVIDLEDRFFS-KHRATCGLPPTYEESGPNQWRDSL  118 (124)
T ss_pred             eEEEEEeecccccc-hHHHhccCCCcccccCceecCccc
Confidence            99999999876531 1112222221  245777766655

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.58  E-value=2.7e-14  Score=131.02  Aligned_cols=111  Identities=25%  Similarity=0.489  Sum_probs=97.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCc
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDE  453 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg---~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~  453 (726)
                      .|.|+|++|++|+..+..+.+||||++.++   ...+||+++ ++.||.|||+|.|.+... ...|.|+|||++.. +++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            689999999999999888999999999984   347899999 999999999999998774 67899999999987 889


Q ss_pred             ceEEEEEEcccccc---CCeeeeeeeccccccceeEEEEEEE
Q 004872          454 NMGSARVNLEGLVE---GSVRDIWVPLEKVNTGELRLQIEAT  492 (726)
Q Consensus       454 ~iG~~~i~L~~l~~---~~~~~~w~~L~~~~~G~I~l~~~~~  492 (726)
                      +||++.++|.++..   +.....|++|.+  .|++++.+.+.
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~  121 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSME  121 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEe
Confidence            99999999998643   335679999976  79999998876

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.58  E-value=4.8e-15  Score=166.47  Aligned_cols=358  Identities=15%  Similarity=0.145  Sum_probs=218.8

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc-cEEeeeecCCCCCCcccceeEEE---
Q 004872          186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMV---  261 (726)
Q Consensus       186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g-~~~rTt~i~~t~nP~WnEtf~~~---  261 (726)
                      --+++.|+.|+.|...+..+-+                      |||+.|.+- ..+.|-++.+|+||.||++..|.   
T Consensus       206 ~~lR~yiyQar~L~a~dk~~~s----------------------dp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~e  263 (1105)
T KOG1326|consen  206 SPLRSYIYQARALGAPDKDDES----------------------DPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVE  263 (1105)
T ss_pred             hhhHHHHHHHHhhcCCCcccCC----------------------CchhhhhcccccceeEeecCcCCCCccceeecccee
Confidence            3467889999999988876654                      899999884 56677788999999999998776   


Q ss_pred             Eec-------CCceEEEEEEEeCCCCCCcceeEEEEEeceeccCCCcceeecCCCCccccccccccCceeeeeeecCC--
Q 004872          262 LHE-------ETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEG--  332 (726)
Q Consensus       262 v~~-------~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--  332 (726)
                      +..       .-..+.|+|||.|+. .+++++|.+.....-..+-+.            -+|           .+.-+  
T Consensus       264 i~ge~~~~~~~ppi~v~e~yd~dr~-g~~ef~gr~~~~p~V~~~~p~------------lkw-----------~p~~rg~  319 (1105)
T KOG1326|consen  264 IYGEAHLVLKNPPIRVFEVYDLDRS-GINEFKGRKKQRPYVMVQCPA------------LKW-----------VPTMRGA  319 (1105)
T ss_pred             ecCccchhhcCCCeEEEEeehhhhh-chHHhhcccccceEEEecCCc------------cce-----------EEeeccc
Confidence            211       134789999999986 899999988754432222110            011           11111  


Q ss_pred             ccccEEEEEEEeeeeecCCCCCCCCCccCCCCcccccCCcc-c-cCCccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC
Q 004872          333 VNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNF-I-SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK  410 (726)
Q Consensus       333 ~~~G~l~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~-~~~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~  410 (726)
                      ...|++.+.    .+.+.-+. +..-.+.........-|.- . ....+.+.|--..-+|+..........|-+-+.+|.
T Consensus       320 ~l~gd~l~a----~eliq~~~-~i~~p~~~~~~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~  394 (1105)
T KOG1326|consen  320 FLDGDVLIA----AELIQIGK-PIPQPPPQREIIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGG  394 (1105)
T ss_pred             ccccchhHH----HHHHhhcC-CCCCCCcccccceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCC
Confidence            112332211    10011010 0000000011111111110 0 001112333333345555444455677888888988


Q ss_pred             eEeecccc--CCCCCceeeEEEEEeeC-C-----ceeEEEEEEeecCC-CCcceEEEEEEc-cccccC------------
Q 004872          411 IVQRTRTA--HSPNHVWNQKFELDEIG-G-----GECLMVKCYNEEIF-GDENMGSARVNL-EGLVEG------------  468 (726)
Q Consensus       411 ~~~kT~~~--~t~nP~wne~f~f~v~~-~-----~~~l~i~V~d~~~~-~d~~iG~~~i~L-~~l~~~------------  468 (726)
                      +..++..+  .-.||.|...+.+.... +     ...+.++|.|.+.+ .....|+|.+.- ....-.            
T Consensus       395 e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~  474 (1105)
T KOG1326|consen  395 ERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFA  474 (1105)
T ss_pred             ceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCC
Confidence            88888777  77899998776655332 2     45788999998887 677888877651 111100            


Q ss_pred             ---------C-------eeeeeeeccc-----------------c-----------ccceeEEEEEEEEecC--------
Q 004872          469 ---------S-------VRDIWVPLEK-----------------V-----------NTGELRLQIEATRVDD--------  496 (726)
Q Consensus       469 ---------~-------~~~~w~~L~~-----------------~-----------~~G~I~l~~~~~~~~~--------  496 (726)
                               .       ....+++...                 .           .++..++.+.....+.        
T Consensus       475 ~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~  554 (1105)
T KOG1326|consen  475 SDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQ  554 (1105)
T ss_pred             CCchhhhcCCchhhhhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhh
Confidence                     0       0011111111                 0           0122334443222110        


Q ss_pred             ------------C--CC--------CC--------------C---------CCCCCCceEEEEEEEEeecCcccccCCCC
Q 004872          497 ------------N--EG--------SR--------------G---------QNIGSGNGWIELVIVEARDLVAADLRGTS  531 (726)
Q Consensus       497 ------------~--~~--------~~--------------~---------~~~~~~~g~L~v~v~~a~~L~~~d~~g~~  531 (726)
                                  .  +.        .+              .         +...+..-..+|.+++|.+|.+.|.+|.+
T Consensus       555 D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~a  634 (1105)
T KOG1326|consen  555 DWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDA  634 (1105)
T ss_pred             hccceeEeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCc
Confidence                        0  00        00              0         01124445678999999999999999999


Q ss_pred             ccEEEEEECCeE--EEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeEEEEEEcc
Q 004872          532 DPYVKVQYGDLK--KRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIGDCVVEYQ  594 (726)
Q Consensus       532 DPyv~v~~~~~~--~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG~~~i~l~  594 (726)
                      |||+++.+|++.  -++..+.+|+||+|.+.|.+...   ...+.++|||+|.++.|+.||+..++|+
T Consensus       635 dpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLE  702 (1105)
T KOG1326|consen  635 DPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLE  702 (1105)
T ss_pred             CceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhh
Confidence            999999999876  57888999999999998888753   6789999999999999999999999886

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.58  E-value=2.7e-14  Score=131.23  Aligned_cols=110  Identities=28%  Similarity=0.387  Sum_probs=97.6

Q ss_pred             EEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC-CCcceEEEE
Q 004872          385 VVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-GDENMGSAR  459 (726)
Q Consensus       385 V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~-~d~~iG~~~  459 (726)
                      |++|++|+.  ..|.+||||++++++..++|+++ ++.||.|||.|.|.+..   ....|.|+|||++.. ++++||++.
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~   79 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT   79 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence            678999988  57899999999999899999999 99999999999999864   367899999999887 789999999


Q ss_pred             EEccccccCCeeeeeeecccc----ccceeEEEEEEEEecC
Q 004872          460 VNLEGLVEGSVRDIWVPLEKV----NTGELRLQIEATRVDD  496 (726)
Q Consensus       460 i~L~~l~~~~~~~~w~~L~~~----~~G~I~l~~~~~~~~~  496 (726)
                      ++++++..+.....|++|.+.    ..|+|+++++|.+.+.
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~  120 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG  120 (127)
T ss_pred             EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence            999999988888899999743    2589999999997654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.57  E-value=3e-14  Score=130.12  Aligned_cols=99  Identities=21%  Similarity=0.393  Sum_probs=87.0

Q ss_pred             cEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeec
Q 004872          379 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  448 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d-~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~  448 (726)
                      +.|.|+|++|+||+..+ ..+.+||||++++.     ...++|+++ ++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~   93 (123)
T cd08521          14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHD   93 (123)
T ss_pred             CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCC
Confidence            38999999999999888 67899999999982     146899999 999999999999997653   568999999998


Q ss_pred             CC-CCcceEEEEEEccccccCCeeeeeeec
Q 004872          449 IF-GDENMGSARVNLEGLVEGSVRDIWVPL  477 (726)
Q Consensus       449 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L  477 (726)
                      .. ++++||++.++|.++..+.....||+|
T Consensus        94 ~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          94 RFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             CCcCCceeeEEEEecccccccCCCccEEEC
Confidence            87 789999999999999777777899986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.57  E-value=4.1e-14  Score=128.04  Aligned_cols=105  Identities=31%  Similarity=0.525  Sum_probs=85.6

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecCC-----CeEEEEEEECCCCCCCCe
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDDG-----SPLTLHVRDHNALLASSS  585 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~~-----~~l~i~V~d~d~~~~d~~  585 (726)
                      |+|+|++|++|+..   |.+||||++++++. .++|+++++ .||.|||+|.|.+..     ..|.+.+||.+..+++.+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            78999999999976   78999999999885 479999999 999999999999854     357778888877666666


Q ss_pred             eEEEEEEccccCCCCceeeEEecCCC-----CCeEEEEEEEE
Q 004872          586 IGDCVVEYQRLPPNQMADKWIPLQGV-----RKGEIHVLITR  622 (726)
Q Consensus       586 lG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~i~l~l~~  622 (726)
                      +|.+.+  ..+..+...+.|++|.+.     ..|+|++++.|
T Consensus        78 ~g~v~l--~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          78 IGKVAL--SKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEEe--cCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            666554  455556678899999753     36999999875

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.57  E-value=2e-14  Score=131.23  Aligned_cols=108  Identities=17%  Similarity=0.330  Sum_probs=91.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-C--Ccce
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G--DENM  455 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~--d~~i  455 (726)
                      |+|+|++|++|..++..+.+||||+++++ .+.+||+++ ++.||.|||.|.|.+.. ...|.|+|||++.. .  +++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            78999999999999988999999999995 789999999 99999999999999755 67899999999887 3  5799


Q ss_pred             EEEEEEccccccCC-eeeeeeeccccc-------cceeEEEE
Q 004872          456 GSARVNLEGLVEGS-VRDIWVPLEKVN-------TGELRLQI  489 (726)
Q Consensus       456 G~~~i~L~~l~~~~-~~~~w~~L~~~~-------~G~I~l~~  489 (726)
                      |++.+++.++.... ....||+|....       .|+|.+++
T Consensus        81 G~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          81 GCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             eEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence            99999999997554 346799996532       46666553

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.57  E-value=1.4e-14  Score=135.90  Aligned_cols=104  Identities=18%  Similarity=0.254  Sum_probs=89.2

Q ss_pred             EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC--CceeEEEE
Q 004872          381 INVTVVEGKDLMPKDKS--------------GKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVK  443 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~--------------g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~--~~~~l~i~  443 (726)
                      |.|+|++|++|+.+|..              +.+||||+|.++++..||+++ ++.||+|||.|.|.+..  ....|.|+
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~   81 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ   81 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence            78999999999998754              368999999999899999999 99999999999999654  36789999


Q ss_pred             EEeecCC-CCcceEEEEEEccccccCCe-------eeeeeeccccccce
Q 004872          444 CYNEEIF-GDENMGSARVNLEGLVEGSV-------RDIWVPLEKVNTGE  484 (726)
Q Consensus       444 V~d~~~~-~d~~iG~~~i~L~~l~~~~~-------~~~w~~L~~~~~G~  484 (726)
                      |||++.. +|++||.+.+++.++...+.       ...|+.|.+...+.
T Consensus        82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~  130 (151)
T cd04018          82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY  130 (151)
T ss_pred             EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence            9999988 89999999999999876542       35788887765543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.56  E-value=4.4e-14  Score=129.07  Aligned_cols=101  Identities=19%  Similarity=0.371  Sum_probs=89.3

Q ss_pred             cEEEEEEEEeecCCCCC-CCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC
Q 004872          379 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d-~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~  450 (726)
                      +.|.|+|++|+||+.++ ..+.+||||++++   +...++|+++ ++.||+|||.|.|.+...   ...|.|+|||.+..
T Consensus        14 ~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~   93 (123)
T cd08390          14 EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRF   93 (123)
T ss_pred             CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcC
Confidence            38999999999999988 6889999999998   3457899999 999999999999997553   46899999999887


Q ss_pred             -CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872          451 -GDENMGSARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                       ++++||++.++|.++........|++|++
T Consensus        94 ~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          94 SRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             CCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence             78999999999999988888889999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>PLN03008 Phospholipase D delta

Probab=99.56  E-value=2.2e-14  Score=162.35  Aligned_cols=98  Identities=22%  Similarity=0.385  Sum_probs=86.5

Q ss_pred             CCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeE
Q 004872          529 GTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKW  605 (726)
Q Consensus       529 g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w  605 (726)
                      +++||||+|.++++ ..||+++++++||+|||+|.|.+.  ...|.|+|+|+|.++ +++||++.||+.++..++..+.|
T Consensus        75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~W  153 (868)
T PLN03008         75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGW  153 (868)
T ss_pred             CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEE
Confidence            47899999999876 459999999999999999999984  578999999999997 58999999999999999999999


Q ss_pred             EecCC------CCCeEEEEEEEEEecCcc
Q 004872          606 IPLQG------VRKGEIHVLITRKVPELD  628 (726)
Q Consensus       606 ~~L~~------~~~G~i~l~l~~~~p~~~  628 (726)
                      ++|.+      +.+|+|+++++| .|..+
T Consensus       154 l~Ll~~~~kp~k~~~kl~v~lqf-~pv~~  181 (868)
T PLN03008        154 FPVLGASGKPPKAETAIFIDMKF-TPFDQ  181 (868)
T ss_pred             EEccccCCCCCCCCcEEEEEEEE-EEccc
Confidence            99963      235899999999 66544

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.56  E-value=2e-14  Score=130.63  Aligned_cols=95  Identities=24%  Similarity=0.344  Sum_probs=84.9

Q ss_pred             EEEEeecCcccccCCCCccEEEEEECCe-------EEEeEeeeCCCCCeeeeEEEEec---CCCeEEEEEEECCC----C
Q 004872          515 VIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLNPQWHQTLEFPD---DGSPLTLHVRDHNA----L  580 (726)
Q Consensus       515 ~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~nP~wne~~~f~v---~~~~l~i~V~d~d~----~  580 (726)
                      ..++|++|+..+..|.+||||++++.+.       .++|+++++++||+|||+|.|.+   ....|.|+|||+|.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            4588999999999999999999999654       48999999999999999999975   35679999999997    8


Q ss_pred             CCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          581 LASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       581 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      ++|++||++.+++.++..+.....|++|.
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence            89999999999999998877788899994

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=2.8e-15  Score=150.19  Aligned_cols=201  Identities=26%  Similarity=0.342  Sum_probs=163.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeC--C--ceeEEEEEEeecC
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIG--G--GECLMVKCYNEEI  449 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~--~--~~~l~i~V~d~~~  449 (726)
                      .+..++.+|++|.+++.++..|||+++.+.     -...+|++. ++.||.|+|+..+....  +  ...+++.|.|++.
T Consensus        94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~  173 (362)
T KOG1013|consen   94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDK  173 (362)
T ss_pred             hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcc
Confidence            689999999999999999999999999983     135889999 99999999986655332  2  4578889999988


Q ss_pred             C-CCcceEEEEEEccccccCCe--eeeeeec--c--c------cccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEE
Q 004872          450 F-GDENMGSARVNLEGLVEGSV--RDIWVPL--E--K------VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVI  516 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~~~~~--~~~w~~L--~--~------~~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v  516 (726)
                      + .++++|+..+++..+.....  -..|+.-  .  .      ...|+|.+++.|.              .....+.|++
T Consensus       174 ~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--------------s~~~~l~vt~  239 (362)
T KOG1013|consen  174 KTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYS--------------STTPGLIVTI  239 (362)
T ss_pred             cccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccC--------------cCCCceEEEE
Confidence            8 88999999999988865442  1222221  1  1      2368888888765              5668899999


Q ss_pred             EEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCee
Q 004872          517 VEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSI  586 (726)
Q Consensus       517 ~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~l  586 (726)
                      .++.+|...|.+|.+||||..++..     .+++|++.++|+||+||+.|.|.+.     ...+.|.|||++.....+++
T Consensus       240 iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~  319 (362)
T KOG1013|consen  240 IRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSI  319 (362)
T ss_pred             EEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCC
Confidence            9999999999999999999999843     3679999999999999999999984     57899999999988778899


Q ss_pred             EEEEEEcc
Q 004872          587 GDCVVEYQ  594 (726)
Q Consensus       587 G~~~i~l~  594 (726)
                      |-+...+.
T Consensus       320 GG~~~g~~  327 (362)
T KOG1013|consen  320 GGSMLGGY  327 (362)
T ss_pred             Cccccccc
Confidence            87766543

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.55  E-value=3.3e-14  Score=129.86  Aligned_cols=88  Identities=15%  Similarity=0.210  Sum_probs=77.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEccE---EeeeecCCCCCCcccceeEEEEe
Q 004872          187 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL---TRRTDARPGSDPRWDSMFNMVLH  263 (726)
Q Consensus       187 vL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~~---~rTt~i~~t~nP~WnEtf~~~v~  263 (726)
                      +|+|+|++|++|+..+..|.+                      ||||+|+++..   .||++++++.||+|||+|.|.+.
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~----------------------DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~   58 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKS----------------------DPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEAT   58 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCC----------------------CcEEEEEECCeeccceeeEEECCCCCccceEEEEEec
Confidence            589999999999998876655                      99999999743   46788889999999999999986


Q ss_pred             cC-CceEEEEEEEeCCCCCCcceeEEEEEeceecc
Q 004872          264 EE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  297 (726)
Q Consensus       264 ~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~  297 (726)
                      .. .+.|.|+|||+|.. +++++||++.++|++..
T Consensus        59 ~~~~~~L~~~V~d~d~~-~~dd~iG~~~i~l~~~~   92 (124)
T cd04037          59 LPGNSILKISVMDYDLL-GSDDLIGETVIDLEDRF   92 (124)
T ss_pred             CCCCCEEEEEEEECCCC-CCCceeEEEEEeecccc
Confidence            55 67899999999986 78999999999998765

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.55  E-value=8e-14  Score=123.35  Aligned_cols=94  Identities=16%  Similarity=0.371  Sum_probs=75.1

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEEC-------C
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDH-------N  578 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~-------d  578 (726)
                      |.|+|.+|+||+     +.+||||++.+.+     .+.+|+++++|+||+|||+|.|++. ...|.+.|||+       |
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEGSQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCCCCEEEEEEEEccccccccc
Confidence            579999999995     4689999999953     3689999999999999999999986 57899999998       5


Q ss_pred             CCCCCCeeEEEEEEcc--ccCCCCceeeEEecCC
Q 004872          579 ALLASSSIGDCVVEYQ--RLPPNQMADKWIPLQG  610 (726)
Q Consensus       579 ~~~~d~~lG~~~i~l~--~l~~~~~~~~w~~L~~  610 (726)
                      ..+.|+.+|.+.+.|+  .+........-+.|.+
T Consensus        76 ~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~  109 (118)
T cd08686          76 GEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG  109 (118)
T ss_pred             ccCcccEEEEEEEEECHHHhccCCeeEEEEEecC
Confidence            6688999988888775  3444333344454443

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.54  E-value=8e-14  Score=127.53  Aligned_cols=102  Identities=27%  Similarity=0.430  Sum_probs=92.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-C-CCCCceeeEEEEEeeCC----ceeEEEEEEeecCC-C
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-H-SPNHVWNQKFELDEIGG----GECLMVKCYNEEIF-G  451 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~-t~nP~wne~f~f~v~~~----~~~l~i~V~d~~~~-~  451 (726)
                      |.|.|+|++|++|+..+..+.+||||++++++..++|++. + +.||.||+.|.|.+...    ...|.|+|||.+.. +
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            4799999999999988888999999999999889999988 4 89999999999998775    57899999999887 8


Q ss_pred             CcceEEEEEEccccccCCeeeeeeecccc
Q 004872          452 DENMGSARVNLEGLVEGSVRDIWVPLEKV  480 (726)
Q Consensus       452 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  480 (726)
                      +++||++.+++.++..++....|++|.+.
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            99999999999999988778899999874

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.53  E-value=5.3e-14  Score=126.01  Aligned_cols=97  Identities=20%  Similarity=0.377  Sum_probs=85.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC-----ceeEEEEEEeecCC-C
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF-G  451 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~-----~~~l~i~V~d~~~~-~  451 (726)
                      +.|+|+|++|++|.    .|.+||||+++++++.++|+++ ++.||.|||.|.|.+..+     ...|.|+|||++.. +
T Consensus         4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~   79 (111)
T cd04011           4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRS   79 (111)
T ss_pred             EEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccccc
Confidence            47999999999998    5789999999999999999999 999999999999997543     36899999999987 7


Q ss_pred             CcceEEEEEEccccccCC---eeeeeeeccc
Q 004872          452 DENMGSARVNLEGLVEGS---VRDIWVPLEK  479 (726)
Q Consensus       452 d~~iG~~~i~L~~l~~~~---~~~~w~~L~~  479 (726)
                      +++||++.++|+++..+.   ....|++|.+
T Consensus        80 ~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          80 DTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             CCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            899999999999997664   4678999875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.53  E-value=1.5e-13  Score=126.91  Aligned_cols=89  Identities=13%  Similarity=0.254  Sum_probs=74.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc--------------cEEeeeecCCCCCC
Q 004872          187 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--------------ELTRRTDARPGSDP  252 (726)
Q Consensus       187 vL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g--------------~~~rTt~i~~t~nP  252 (726)
                      +..|++++|+||+ .+..|.+                      ||||++++.              +..+|+++++++||
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~----------------------DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP   58 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNP----------------------DPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINP   58 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCC----------------------CceEEEEEECCCcccccccccccceeeeeeEcCCCCC
Confidence            4689999999998 5666655                      999999993              25788889999999


Q ss_pred             cc-cceeEEEEecCCceEEEEEEEeCCCCCC---cceeEEEEEeceeccCCC
Q 004872          253 RW-DSMFNMVLHEETGTVRFNLYECIPGHVK---YDYLTSCEVKMKYVADDS  300 (726)
Q Consensus       253 ~W-nEtf~~~v~~~~~~L~~~V~D~d~~~~~---dd~lG~~~i~L~~l~~~~  300 (726)
                      +| ||+|.|.+. .++.|.|+|||++.. .+   +++||.+.++|.++....
T Consensus        59 ~W~nE~f~f~v~-~~~~L~v~V~D~~~~-~~~~~~d~lG~~~i~l~~l~~~~  108 (137)
T cd08691          59 VWHREQFVFVGL-PTDVLEIEVKDKFAK-SRPIIRRFLGKLSIPVQRLLERH  108 (137)
T ss_pred             ceEceEEEEEcC-CCCEEEEEEEecCCC-CCccCCceEEEEEEEHHHhcccc
Confidence            99 999999984 467999999998753 22   799999999999998643

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.53  E-value=4.2e-14  Score=126.57  Aligned_cols=99  Identities=26%  Similarity=0.410  Sum_probs=87.1

Q ss_pred             CCCCCCcEEEEEECC-eEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCCCCcceEEEEEEccccccC-Cee
Q 004872          396 KSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEGLVEG-SVR  471 (726)
Q Consensus       396 ~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~-~~~  471 (726)
                      .+|.+||||++++++ ..++|+++ ++.||.|||.|.|.+.+. ...|.|.|||++..++++||.+.++|.++... ...
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~   88 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVG   88 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcc
Confidence            468899999999976 46899999 999999999999998775 67899999999877889999999999999654 355


Q ss_pred             eeeeeccccccceeEEEEEEEEe
Q 004872          472 DIWVPLEKVNTGELRLQIEATRV  494 (726)
Q Consensus       472 ~~w~~L~~~~~G~I~l~~~~~~~  494 (726)
                      ..||+|.+...|+|++++.|.|+
T Consensus        89 ~~w~~L~~~~~G~i~~~~~~~p~  111 (111)
T cd04052          89 QQWFPLSGNGQGRIRISALWKPV  111 (111)
T ss_pred             ceeEECCCCCCCEEEEEEEEecC
Confidence            79999998788999999999864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.53  E-value=4.5e-14  Score=130.74  Aligned_cols=92  Identities=16%  Similarity=0.187  Sum_probs=79.7

Q ss_pred             cccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc--------cEEeeeecCCCCCCccc
Q 004872          184 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--------ELTRRTDARPGSDPRWD  255 (726)
Q Consensus       184 ~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g--------~~~rTt~i~~t~nP~Wn  255 (726)
                      ..+.|.|+|++|++|+..+..|.+                      ||||+|++.        ...||+++++|.||+||
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~----------------------dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wn   71 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSS----------------------DPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFD   71 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCC----------------------CCEEEEEEECCCcCccccccccccCcCCCCCccC
Confidence            458899999999999988766654                      999999994        25688889999999999


Q ss_pred             ceeEEEEecC-----CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872          256 SMFNMVLHEE-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  298 (726)
Q Consensus       256 Etf~~~v~~~-----~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~  298 (726)
                      |+|.|.+...     ...|.|+|||++.. .++++||++.++|+++..
T Consensus        72 E~f~f~i~~~~~~~~~~~l~~~V~d~d~~-~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          72 ESFEFNVPPEQCSVEGALLLFTVKDYDLL-GSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             CEEEEEechhhcccCCCEEEEEEEecCCC-CCCcEeEEEEEeHHHCCc
Confidence            9999998652     45899999999986 789999999999999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.53  E-value=9e-14  Score=128.50  Aligned_cols=107  Identities=32%  Similarity=0.494  Sum_probs=94.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC--ceeEEEEEEeecCC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~  450 (726)
                      +.|.|+|++|++|+..+..+.+||||++.+.     ...++|+++ ++.||.||++|.|.+...  ...|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            3799999999999988888899999999994     368999999 999999999999997653  56899999999877


Q ss_pred             -CCcceEEEEEEccccccCCeeeeeeeccccccceeE
Q 004872          451 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELR  486 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~  486 (726)
                       ++++||++.+++.++... ....||+|.+...|+..
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~~  128 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEYY  128 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-ccCceEECcCccccccc
Confidence             889999999999999855 66799999988878653

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.52  E-value=1.5e-13  Score=127.56  Aligned_cols=112  Identities=18%  Similarity=0.383  Sum_probs=95.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-eecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-----C
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV-QRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-----G  451 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~-~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-----~  451 (726)
                      ..|.|.|.+|++|+.++     +|||+|.+++.. .||+++ ++.||.|+|.|.|.+......+.|.||..+..     +
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~   85 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDK   85 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccC
Confidence            37999999999998864     799999997775 699999 99999999999998766677899999865432     5


Q ss_pred             CcceEEEEEEccccccCCeeeeeeeccccc-------------cceeEEEEEEEEec
Q 004872          452 DENMGSARVNLEGLVEGSVRDIWVPLEKVN-------------TGELRLQIEATRVD  495 (726)
Q Consensus       452 d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-------------~G~I~l~~~~~~~~  495 (726)
                      +.+||.+.|++.++..+...+.||+|.+..             .+.|+++++|.++.
T Consensus        86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~  142 (146)
T cd04013          86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR  142 (146)
T ss_pred             CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence            789999999999999888889999997532             26899999998653

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.52  E-value=5.5e-14  Score=128.81  Aligned_cols=107  Identities=24%  Similarity=0.361  Sum_probs=92.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeecccc--CCCCCceeeEEEEEeeCC-----ceeEEEEEEeecCC-
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA--HSPNHVWNQKFELDEIGG-----GECLMVKCYNEEIF-  450 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-~~~kT~~~--~t~nP~wne~f~f~v~~~-----~~~l~i~V~d~~~~-  450 (726)
                      +|.|+|++|++|+..+..+.+||||++++++ ..++|++.  ++.||.|||.|.|.+...     ...|.|+|||++.. 
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            3899999999999888889999999999977 88999997  589999999999998776     57999999999886 


Q ss_pred             CCcceEEEEEEccccccCCe-----eeeeeecccc---ccceeE
Q 004872          451 GDENMGSARVNLEGLVEGSV-----RDIWVPLEKV---NTGELR  486 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~-----~~~w~~L~~~---~~G~I~  486 (726)
                      ++++||++.+++.++..+..     ...||+|...   ..|.|+
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~  124 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN  124 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence            88999999999999986553     4689999853   356665

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.52  E-value=6.3e-14  Score=123.98  Aligned_cols=78  Identities=19%  Similarity=0.342  Sum_probs=66.0

Q ss_pred             EEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc------cEEeeeecCCCCCCcccceeEEE
Q 004872          188 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDSMFNMV  261 (726)
Q Consensus       188 L~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g------~~~rTt~i~~t~nP~WnEtf~~~  261 (726)
                      |.|+|++|+||+.     .+                      ||||++++.      ...+|+++++|+||+|||+|.|.
T Consensus         1 L~V~V~~A~~L~~-----~s----------------------DPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~   53 (118)
T cd08686           1 LNVIVHSAQGFKQ-----SA----------------------NLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE   53 (118)
T ss_pred             CEEEEEeCCCCCC-----CC----------------------CCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE
Confidence            6899999999963     23                      999999993      24789999999999999999999


Q ss_pred             EecCCceEEEEEEEe-------CCCCCCcceeEEEEEece
Q 004872          262 LHEETGTVRFNLYEC-------IPGHVKYDYLTSCEVKMK  294 (726)
Q Consensus       262 v~~~~~~L~~~V~D~-------d~~~~~dd~lG~~~i~L~  294 (726)
                      +.+ .+.|++.|||+       |.. .+|+++|++.+.|.
T Consensus        54 l~~-s~~L~~~v~d~~~~~~~~d~~-~~d~~~G~g~i~Ld   91 (118)
T cd08686          54 LEG-SQTLRILCYEKCYSKVKLDGE-GTDAIMGKGQIQLD   91 (118)
T ss_pred             eCC-CCEEEEEEEEccccccccccc-CcccEEEEEEEEEC
Confidence            964 78999999998       343 68899988887773

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.50  E-value=3.4e-13  Score=126.41  Aligned_cols=113  Identities=24%  Similarity=0.307  Sum_probs=93.4

Q ss_pred             EEEEEEEeec--CCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEEeeCC---------ceeEEEE
Q 004872          381 INVTVVEGKD--LMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG---------GECLMVK  443 (726)
Q Consensus       381 L~V~V~~a~~--L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~v~~~---------~~~l~i~  443 (726)
                      ..++|..|++  |+..+..+.+||||++++     +.+.+||+++ +|.||+|||+|.|.+...         ...|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            4566666666  677777889999999987     3469999999 999999999999997543         3579999


Q ss_pred             EEeecCC--CCcceEEEEEEccccccCCeeeeeeecccc---ccceeEEEEEEEE
Q 004872          444 CYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEKV---NTGELRLQIEATR  493 (726)
Q Consensus       444 V~d~~~~--~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~---~~G~I~l~~~~~~  493 (726)
                      |||++.+  +|++||++.++|..+..+.....|++|...   -.|+|.+++....
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~  138 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE  138 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence            9999986  799999999999999877777789998742   3699999998763

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.50  E-value=9.7e-14  Score=128.65  Aligned_cols=90  Identities=14%  Similarity=0.253  Sum_probs=77.9

Q ss_pred             ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc------cEEeeeecCCCCCCcccc
Q 004872          183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDS  256 (726)
Q Consensus       183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g------~~~rTt~i~~t~nP~WnE  256 (726)
                      ...|.|.|+|++|+||+..+..|.+                      ||||+|.+.      ...+|++++++.||+|||
T Consensus        10 ~~~~~L~V~Vi~a~~L~~~d~~~~~----------------------DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne   67 (133)
T cd08384          10 TQRRGLIVGIIRCVNLAAMDANGYS----------------------DPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNE   67 (133)
T ss_pred             CCCCEEEEEEEEEcCCCCcCCCCCC----------------------CcEEEEEEEcCCCccCCceeeeEeccCCCCccc
Confidence            3569999999999999998876654                      999999994      246788899999999999


Q ss_pred             eeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEecee
Q 004872          257 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY  295 (726)
Q Consensus       257 tf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~  295 (726)
                      +|.|.+...   ...|.|+|||+|.. .++++||.+.+++..
T Consensus        68 ~f~f~~~~~~l~~~~l~~~V~d~d~~-~~~~~lG~~~i~l~~  108 (133)
T cd08384          68 EFFYDIKHSDLAKKTLEITVWDKDIG-KSNDYIGGLQLGINA  108 (133)
T ss_pred             EEEEECCHHHhCCCEEEEEEEeCCCC-CCccEEEEEEEecCC
Confidence            999998653   46899999999986 788999999999975

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.50  E-value=2.2e-13  Score=122.84  Aligned_cols=100  Identities=30%  Similarity=0.500  Sum_probs=90.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecCC-CCcceE
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG-KIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDENMG  456 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~-~d~~iG  456 (726)
                      |.|+|++|++|+..+..+.+||||++.++ ...++|+++ ++.||.|||+|.|.+.. ....+.|+|||++.. ++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            57899999999988888899999999995 567899999 99999999999999876 467899999999887 789999


Q ss_pred             EEEEEccccccCCeeeeeeecccc
Q 004872          457 SARVNLEGLVEGSVRDIWVPLEKV  480 (726)
Q Consensus       457 ~~~i~L~~l~~~~~~~~w~~L~~~  480 (726)
                      ++.+++.++..+.....|++|.+.
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~  104 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDGQ  104 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcCC
Confidence            999999999888788899999864

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.49  E-value=2.3e-14  Score=147.59  Aligned_cols=104  Identities=31%  Similarity=0.506  Sum_probs=93.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEEeeCC--ceeEEEEEEeecCC-
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF-  450 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~-  450 (726)
                      .|.|+|.+|+||.++|.+|.+||||++.+     +..+++|+++ .++||+|||+|.|.....  +..|.|+|||+|+. 
T Consensus       181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs  260 (683)
T KOG0696|consen  181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS  260 (683)
T ss_pred             eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc
Confidence            79999999999999999999999999999     3458999999 999999999999998764  77999999999999 


Q ss_pred             CCcceEEEEEEccccccCCeeeeeeeccccccce
Q 004872          451 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE  484 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~  484 (726)
                      +++++|+.++.+++|...+ .+.||.|.....|+
T Consensus       261 RNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGE  293 (683)
T KOG0696|consen  261 RNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGE  293 (683)
T ss_pred             cccccceecccHHHHhhcc-hhhHHHHhhhhcCc
Confidence            9999999999999997544 46899988766665

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.49  E-value=1.1e-13  Score=127.88  Aligned_cols=98  Identities=18%  Similarity=0.295  Sum_probs=82.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCe--Eeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKI--VQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF  450 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~--~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~  450 (726)
                      .|.|+|++|+||+..+..|.+||||++++   ++.  +.||+++ ++.||+|||+|.|.+..   .+..|.|+|||++..
T Consensus        16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~   95 (136)
T cd08406          16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTED   95 (136)
T ss_pred             EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCC
Confidence            79999999999999998899999999999   222  6789999 99999999999999765   367899999999987


Q ss_pred             -CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872          451 -GDENMGSARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                       ++++||++.+....  .+....+|..+..
T Consensus        96 ~~~~~iG~v~lg~~~--~g~~~~hW~~ml~  123 (136)
T cd08406          96 GKTPNVGHVIIGPAA--SGMGLSHWNQMLA  123 (136)
T ss_pred             CCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence             89999999997654  3444556766544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.49  E-value=9.8e-14  Score=128.19  Aligned_cols=97  Identities=21%  Similarity=0.333  Sum_probs=79.8

Q ss_pred             cEEEEEEEEeecCCCCCC--CCCCCcEEEEEEC--C---eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEee
Q 004872          379 RKINVTVVEGKDLMPKDK--SGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNE  447 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~--~g~~dpyv~v~lg--~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~  447 (726)
                      +.|.|+|++|+||..++.  .+.+||||+|++.  +   .++||+++ ++.||+|||.|.|.+...   +..|.|+|||+
T Consensus        15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~   94 (138)
T cd08407          15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQ   94 (138)
T ss_pred             CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeC
Confidence            379999999999998873  3559999999992  1   26789999 999999999999997663   67899999999


Q ss_pred             cCC-CCcceEEEEEEccccccCCeeeeeeec
Q 004872          448 EIF-GDENMGSARVNLEGLVEGSVRDIWVPL  477 (726)
Q Consensus       448 ~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L  477 (726)
                      +.. ++++||++.+.+..  .+....+|..+
T Consensus        95 d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m  123 (138)
T cd08407          95 DSPGQSLPLGRCSLGLHT--SGTERQHWEEM  123 (138)
T ss_pred             CCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence            988 89999999999975  33344456554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.49  E-value=3.8e-13  Score=123.76  Aligned_cols=109  Identities=24%  Similarity=0.351  Sum_probs=91.7

Q ss_pred             eEEEEEEEEeecCcccc--cCCCCccEEEEEEC------CeEEEeEeeeCCC-CCeeeeEEEEecC---CCeEEEEEEEC
Q 004872          510 GWIELVIVEARDLVAAD--LRGTSDPYVKVQYG------DLKKRTKVIFKTL-NPQWHQTLEFPDD---GSPLTLHVRDH  577 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d--~~g~~DPyv~v~~~------~~~~kT~v~~~t~-nP~wne~~~f~v~---~~~l~i~V~d~  577 (726)
                      ..|+|+|++|++|+..+  ..+.+||||++++.      ..+.+|+++.++. ||.|||+|.|.+.   ...|.++|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            46899999999999887  57899999999993      4568999988765 9999999999974   24699999999


Q ss_pred             CCCCCCCeeEEEEEEccccCCCCceeeEEecCC-----CCCeEEEEEEEE
Q 004872          578 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITR  622 (726)
Q Consensus       578 d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l~~  622 (726)
                      +.. ++++||++.++++++..+.   .|++|.+     ...|.|.+.+++
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcCce---EEEEecCCCCCCCcceeEEEEEEE
Confidence            988 8999999999999996553   6888853     335889888875

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.49  E-value=1.4e-13  Score=127.87  Aligned_cols=100  Identities=26%  Similarity=0.529  Sum_probs=89.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEeecccc-CCCCCceeeEEEEEeeCC----------------cee
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYG----KIVQRTRTA-HSPNHVWNQKFELDEIGG----------------GEC  439 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg----~~~~kT~~~-~t~nP~wne~f~f~v~~~----------------~~~  439 (726)
                      |.|+|++|++|..+ ..|.+||||+++++    ...++|+++ ++.||.|||.|.|.+...                ...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999888 78999999999997    789999999 999999999999997653                458


Q ss_pred             EEEEEEeecCC-CCcceEEEEEEccccccCCeeeeeeeccccc
Q 004872          440 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  481 (726)
Q Consensus       440 l~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  481 (726)
                      |.|+|||++.. ++++||++.+++.++........||+|.+.+
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            99999999987 8999999999999998777788999998753

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.47  E-value=5.3e-13  Score=120.73  Aligned_cols=105  Identities=29%  Similarity=0.475  Sum_probs=84.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC-CCcc
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-GDEN  454 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~-~d~~  454 (726)
                      |.|+|++|++|+..   +.+||||+++++++ .++|+++ + .||.|||+|.|.+..   ....|.|.+||.+.. .+..
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            78999999999876   78999999999764 6899999 9 999999999999876   346788888988765 4555


Q ss_pred             eEEEEEEccccccCCeeeeeeeccccc-----cceeEEEEEE
Q 004872          455 MGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEA  491 (726)
Q Consensus       455 iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~~~  491 (726)
                      +|.+  ++..+..+.....||+|.+..     .|+|++.+.|
T Consensus        78 ~g~v--~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          78 IGKV--ALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEE--EecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            6655  455555566778999998643     6999998865

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.47  E-value=1.8e-13  Score=127.18  Aligned_cols=92  Identities=18%  Similarity=0.284  Sum_probs=78.1

Q ss_pred             cccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEcc-------EEeeeecCCCCCCcc
Q 004872          182 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE-------LTRRTDARPGSDPRW  254 (726)
Q Consensus       182 ~~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~-------~~rTt~i~~t~nP~W  254 (726)
                      .+..|.|.|+|++|+||+..+..|.+                      ||||++++..       ..||++++++.||+|
T Consensus        11 ~~~~~~L~V~VikarnL~~~~~~~~~----------------------dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvf   68 (138)
T cd08408          11 NALTGRLSVEVIKGSNFKNLAMNKAP----------------------DTYVKLTLLNSDGQEISKSKTSIRRGQPDPEF   68 (138)
T ss_pred             cCCCCeEEEEEEEecCCCccccCCCC----------------------CeeEEEEEEeCCCcceeeccceeecCCCCCcE
Confidence            35679999999999999998876654                      9999999931       247888899999999


Q ss_pred             cceeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEeceec
Q 004872          255 DSMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV  296 (726)
Q Consensus       255 nEtf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l  296 (726)
                      ||+|.|.+...   +..|.|.|||.|.. .++++||++.+++...
T Consensus        69 nEtF~f~i~~~~l~~~~L~~~V~~~~~~-~~~~~iG~v~l~~~~~  112 (138)
T cd08408          69 KETFVFQVALFQLSEVTLMFSVYNKRKM-KRKEMIGWFSLGLNSS  112 (138)
T ss_pred             eeeEEEECCHHHhCccEEEEEEEECCCC-CCCcEEEEEEECCcCC
Confidence            99999998653   46999999999986 7999999999988643

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.46  E-value=2.2e-13  Score=126.69  Aligned_cols=92  Identities=15%  Similarity=0.189  Sum_probs=77.3

Q ss_pred             cccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc------cEEeeeecCCCCCCccc
Q 004872          182 KAVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWD  255 (726)
Q Consensus       182 ~~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g------~~~rTt~i~~t~nP~Wn  255 (726)
                      .+..|.|.|+|++|++|+..+..|.+                      ||||+|+++      ...+|++++++.||+||
T Consensus        11 ~~~~~~l~V~Vi~a~~L~~~d~~g~~----------------------dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wn   68 (136)
T cd08402          11 VPTAGKLTVVILEAKNLKKMDVGGLS----------------------DPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYN   68 (136)
T ss_pred             cCCCCeEEEEEEEeeCCCcccCCCCC----------------------CCeEEEEEEECCcccceeeccceeCCCCCccc
Confidence            35669999999999999988876654                      999999994      23567778999999999


Q ss_pred             ceeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEeceec
Q 004872          256 SMFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV  296 (726)
Q Consensus       256 Etf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l  296 (726)
                      |+|.|.+...   ...|.|+|||+|.. +++++||++.+++...
T Consensus        69 e~f~f~i~~~~l~~~~l~~~v~d~~~~-~~~~~iG~~~i~~~~~  111 (136)
T cd08402          69 ESFSFEVPFEQIQKVHLIVTVLDYDRI-GKNDPIGKVVLGCNAT  111 (136)
T ss_pred             ceEEEECCHHHhCCCEEEEEEEeCCCC-CCCceeEEEEECCccC
Confidence            9999997543   24799999999986 7899999999999653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.46  E-value=2.3e-13  Score=126.61  Aligned_cols=90  Identities=16%  Similarity=0.200  Sum_probs=77.1

Q ss_pred             ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc--c----EEeeeecCCCCCCcccc
Q 004872          183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--E----LTRRTDARPGSDPRWDS  256 (726)
Q Consensus       183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g--~----~~rTt~i~~t~nP~WnE  256 (726)
                      +..+.|.|+|++|+||+..+..|.+                      ||||+|++.  .    ..+|++++++.||+|||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~g~~----------------------Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e   69 (136)
T cd08404          12 PTTNRLTVVVLKARHLPKMDVSGLA----------------------DPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNE   69 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCC----------------------CeEEEEEEEcCCceeeeEcCccccCCCCCccCc
Confidence            4568999999999999998877755                      999999983  1    35677889999999999


Q ss_pred             eeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEecee
Q 004872          257 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKY  295 (726)
Q Consensus       257 tf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~  295 (726)
                      +|.|.+...   ...|.|+|||+|.. .++++||++.+++..
T Consensus        70 ~F~f~v~~~~~~~~~l~~~v~d~d~~-~~~~~iG~~~~~~~~  110 (136)
T cd08404          70 SFVFDIPSEELEDISVEFLVLDSDRV-TKNEVIGRLVLGPKA  110 (136)
T ss_pred             eEEEECCHHHhCCCEEEEEEEECCCC-CCCccEEEEEECCcC
Confidence            999998643   45799999999986 789999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>PLN03008 Phospholipase D delta

Probab=99.46  E-value=3.7e-13  Score=152.53  Aligned_cols=99  Identities=21%  Similarity=0.444  Sum_probs=89.3

Q ss_pred             CCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcceEEEEEEccccccCCeeeeee
Q 004872          398 GKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWV  475 (726)
Q Consensus       398 g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~  475 (726)
                      +.+||||+|.++++ +.||+++ ++.||+|||+|.|.+.++...|.|+|+|++.+++++||++.++++++..+...+.|+
T Consensus        75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl  154 (868)
T PLN03008         75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWF  154 (868)
T ss_pred             CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEE
Confidence            46799999999765 6799999 999999999999999888889999999999998899999999999999998889999


Q ss_pred             ecccc------ccceeEEEEEEEEecC
Q 004872          476 PLEKV------NTGELRLQIEATRVDD  496 (726)
Q Consensus       476 ~L~~~------~~G~I~l~~~~~~~~~  496 (726)
                      +|.+.      ..|+|+++++|.++..
T Consensus       155 ~Ll~~~~kp~k~~~kl~v~lqf~pv~~  181 (868)
T PLN03008        155 PVLGASGKPPKAETAIFIDMKFTPFDQ  181 (868)
T ss_pred             EccccCCCCCCCCcEEEEEEEEEEccc
Confidence            99763      3589999999999754

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.46  E-value=2.2e-13  Score=126.74  Aligned_cols=91  Identities=15%  Similarity=0.189  Sum_probs=77.5

Q ss_pred             ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc------cEEeeeecCCCCCCcccc
Q 004872          183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDS  256 (726)
Q Consensus       183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g------~~~rTt~i~~t~nP~WnE  256 (726)
                      +..|.|.|+|++|+||+..+..|.+                      ||||+|++.      ...+|++++++.||+|||
T Consensus        12 ~~~~~L~v~vi~a~~L~~~~~~g~~----------------------dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne   69 (136)
T cd08405          12 PTANRITVNIIKARNLKAMDINGTS----------------------DPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNE   69 (136)
T ss_pred             CCCCeEEEEEEEeeCCCccccCCCC----------------------CceEEEEEEeCCCccccccCcceeCCCCCcccc
Confidence            4569999999999999988876654                      999999982      235788899999999999


Q ss_pred             eeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEeceec
Q 004872          257 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYV  296 (726)
Q Consensus       257 tf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l  296 (726)
                      +|.|.+...   ...|.|+|||.|.. +++++||.+.+++.+.
T Consensus        70 ~F~f~i~~~~~~~~~l~~~v~d~~~~-~~~~~lG~~~i~~~~~  111 (136)
T cd08405          70 SFIFNIPLERLRETTLIITVMDKDRL-SRNDLIGKIYLGWKSG  111 (136)
T ss_pred             eEEEeCCHHHhCCCEEEEEEEECCCC-CCCcEeEEEEECCccC
Confidence            999987532   45899999999986 7899999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.46  E-value=3.1e-13  Score=125.44  Aligned_cols=88  Identities=19%  Similarity=0.342  Sum_probs=74.0

Q ss_pred             ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE--c----cEEeeeecCCCCCCcccc
Q 004872          183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--E----ELTRRTDARPGSDPRWDS  256 (726)
Q Consensus       183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~--g----~~~rTt~i~~t~nP~WnE  256 (726)
                      +..|.|.|+|++|++|+..+..|.+                      ||||+|++  +    ...+|++++++.||+|||
T Consensus        11 ~~~~~L~V~vi~a~~L~~~d~~g~~----------------------DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE   68 (135)
T cd08410          11 PSAGRLNVDIIRAKQLLQTDMSQGS----------------------DPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNE   68 (135)
T ss_pred             CCCCeEEEEEEEecCCCcccCCCCC----------------------CeEEEEEEEcCCcccceEcCccccCCCCCccce
Confidence            4559999999999999998877654                      99999998  2    235777889999999999


Q ss_pred             eeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEec
Q 004872          257 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKM  293 (726)
Q Consensus       257 tf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L  293 (726)
                      +|.|.+...   ...|.|+|||+|.. .++++||.+.+..
T Consensus        69 ~F~f~i~~~~l~~~~l~~~V~d~d~~-~~~~~iG~~~l~~  107 (135)
T cd08410          69 SFSFKVPQEELENVSLVFTVYGHNVK-SSNDFIGRIVIGQ  107 (135)
T ss_pred             eEEEeCCHHHhCCCEEEEEEEeCCCC-CCCcEEEEEEEcC
Confidence            999998543   34799999999986 7899999998665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.46  E-value=3.6e-13  Score=120.40  Aligned_cols=86  Identities=26%  Similarity=0.407  Sum_probs=75.3

Q ss_pred             EEEEEEeecCcccccCCCCccEEEEEECCe------EEEeEeeeCCCCCeeeeEEEEecC-------CCeEEEEEEECCC
Q 004872          513 ELVIVEARDLVAADLRGTSDPYVKVQYGDL------KKRTKVIFKTLNPQWHQTLEFPDD-------GSPLTLHVRDHNA  579 (726)
Q Consensus       513 ~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~------~~kT~v~~~t~nP~wne~~~f~v~-------~~~l~i~V~d~d~  579 (726)
                      .+..++|++|+..+..|.+||||++++.+.      .++|+++++++||+|| +|.|+..       ...|.|+|||++.
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~   81 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS   81 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence            345679999999999999999999998542      5899999999999999 6888752       5789999999999


Q ss_pred             CCCCCeeEEEEEEccccCCC
Q 004872          580 LLASSSIGDCVVEYQRLPPN  599 (726)
Q Consensus       580 ~~~d~~lG~~~i~l~~l~~~  599 (726)
                      +++|++||++.++++++..+
T Consensus        82 ~~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          82 SGKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             CCCCcEEEEEEEEHHHHhcC
Confidence            99999999999999999744

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.46  E-value=1.6e-13  Score=169.35  Aligned_cols=114  Identities=18%  Similarity=0.358  Sum_probs=101.1

Q ss_pred             CCCceEEEEEEEEeecCcccccCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC----CCeEEEEEEECCCC
Q 004872          506 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD----GSPLTLHVRDHNAL  580 (726)
Q Consensus       506 ~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~----~~~l~i~V~d~d~~  580 (726)
                      ..-.|.|+|+|++|+||.  +..|.+||||++.++++ ++||++++++.||+|||.|.|.+.    +..|+|+|||+|.+
T Consensus      1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200       1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred             hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence            345699999999999998  45789999999999965 889999999999999999997663    35799999999999


Q ss_pred             CCCCeeEEEEEEccccCCCCceeeEEecCC--CCCeE---EEEEEEE
Q 004872          581 LASSSIGDCVVEYQRLPPNQMADKWIPLQG--VRKGE---IHVLITR  622 (726)
Q Consensus       581 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~--~~~G~---i~l~l~~  622 (726)
                      ++| .||++.+++.++..+.....||+|.+  .+.|.   |++.+.|
T Consensus      2054 ~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w 2099 (2102)
T PLN03200       2054 GKS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQW 2099 (2102)
T ss_pred             CCC-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEe
Confidence            655 99999999999998989999999985  56798   9999887

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.44  E-value=1.6e-12  Score=118.79  Aligned_cols=98  Identities=26%  Similarity=0.417  Sum_probs=83.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC----ceeEEEEEEeec
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEE  448 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~~  448 (726)
                      +.|.|+|++|++|+..+..+.+||||++++.     ...++|+++ ++.||.||+.|.|.....    ...+.|+|||++
T Consensus        15 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~   94 (123)
T cd04035          15 SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDED   94 (123)
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcC
Confidence            3799999999999988888999999999982     247899999 999999999999964332    468999999998


Q ss_pred             CCCCcceEEEEEEccccccCCeeeeeee
Q 004872          449 IFGDENMGSARVNLEGLVEGSVRDIWVP  476 (726)
Q Consensus       449 ~~~d~~iG~~~i~L~~l~~~~~~~~w~~  476 (726)
                      ..++++||++.++++++..+.....|+.
T Consensus        95 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          95 RFGNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             CcCCeeEEEEEEEcccCCCCcceEeecc
Confidence            7778899999999999987766555554

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.44  E-value=4e-13  Score=124.64  Aligned_cols=89  Identities=12%  Similarity=0.238  Sum_probs=75.5

Q ss_pred             ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc------cEEeeeecCCCCCCcccc
Q 004872          183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDS  256 (726)
Q Consensus       183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g------~~~rTt~i~~t~nP~WnE  256 (726)
                      +..|.|+|+|++|++|+..+..|.+                      ||||+|++.      ...+|++++++.||+|||
T Consensus        11 ~~~~~L~V~v~~A~~L~~~d~~g~~----------------------dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne   68 (134)
T cd08403          11 PTAGRLTLTIIKARNLKAMDITGFS----------------------DPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNE   68 (134)
T ss_pred             CCCCEEEEEEEEeeCCCccccCCCC----------------------CceEEEEEEeCCcccceecCCcccCCCCCcccc
Confidence            4569999999999999999877655                      999999983      235677788999999999


Q ss_pred             eeEEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEece
Q 004872          257 MFNMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMK  294 (726)
Q Consensus       257 tf~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L~  294 (726)
                      +|.|.+...   ...|.|+|||+|.. +++++||++.+++.
T Consensus        69 ~f~f~i~~~~~~~~~l~~~v~d~~~~-~~~~~IG~~~l~~~  108 (134)
T cd08403          69 ALVFDVPPENVDNVSLIIAVVDYDRV-GHNELIGVCRVGPN  108 (134)
T ss_pred             eEEEECCHHHhCCCEEEEEEEECCCC-CCCceeEEEEECCC
Confidence            999987543   34699999999986 78999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.43  E-value=5.2e-13  Score=123.86  Aligned_cols=100  Identities=22%  Similarity=0.410  Sum_probs=87.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF  450 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~  450 (726)
                      .|.|+|++|+||+..+..+.+||||++++..     ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||.+..
T Consensus        15 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~   94 (134)
T cd00276          15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV   94 (134)
T ss_pred             EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCC
Confidence            7999999999999988889999999999932     36799999 999999999999997664   57899999999986


Q ss_pred             -CCcceEEEEEEccccccCCeeeeeeeccccc
Q 004872          451 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  481 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  481 (726)
                       ++++||.+.+++++  .+.....|++|....
T Consensus        95 ~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~  124 (134)
T cd00276          95 GRNEVIGQVVLGPDS--GGEELEHWNEMLASP  124 (134)
T ss_pred             CCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence             88999999999999  455678999998754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.43  E-value=1.4e-12  Score=119.38  Aligned_cols=108  Identities=25%  Similarity=0.405  Sum_probs=88.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceE
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  456 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG  456 (726)
                      .|.|+|.+|+ |...+..+.+||||+++++++ .++|+++ ++.||.|||.|.|.+. ....|.|+|||++.. .+++||
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~iG   80 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLLG   80 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEEE
Confidence            6999999998 555555788999999999766 8999999 9999999999999964 456899999999988 889999


Q ss_pred             EEEEEccccccCCe-----eeeeeeccccc------cceeEEEE
Q 004872          457 SARVNLEGLVEGSV-----RDIWVPLEKVN------TGELRLQI  489 (726)
Q Consensus       457 ~~~i~L~~l~~~~~-----~~~w~~L~~~~------~G~I~l~~  489 (726)
                      ++.++|.++.....     ...|+++...+      .|+|.+.+
T Consensus        81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          81 EASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            99999999885432     23578885432      46666654

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.42  E-value=7.6e-13  Score=123.03  Aligned_cols=99  Identities=14%  Similarity=0.234  Sum_probs=82.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF  450 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~  450 (726)
                      .|.|+|++|+||...+ .+.+||||++++  +.   ..+||+++ ++.||.|||.|.|.+...   ...|.|+||+.+..
T Consensus        16 ~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~   94 (137)
T cd08409          16 RLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGV   94 (137)
T ss_pred             eEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCC
Confidence            7999999999999888 788999999998  22   36789999 999999999999997542   56899999999977


Q ss_pred             -CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872          451 -GDENMGSARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                       ++++||++.+.......+....+|..+..
T Consensus        95 ~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~  124 (137)
T cd08409          95 RKSKLLGRVVLGPFMYARGKELEHWNDMLS  124 (137)
T ss_pred             CCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence             89999999999766555555566766654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.39  E-value=2e-12  Score=115.59  Aligned_cols=85  Identities=20%  Similarity=0.366  Sum_probs=71.2

Q ss_pred             EEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc-c------EEeeeecCCCCCCcccceeEEEEe
Q 004872          191 RVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-E------LTRRTDARPGSDPRWDSMFNMVLH  263 (726)
Q Consensus       191 ~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g-~------~~rTt~i~~t~nP~WnEtf~~~v~  263 (726)
                      -.++|++|+..+..|.+                      ||||+|++. +      ..+|+++++++||+|| +|.|.+.
T Consensus         5 ~~i~a~~L~~~d~~~~~----------------------DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~   61 (110)
T cd04047           5 LQFSGKKLDKKDFFGKS----------------------DPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQ   61 (110)
T ss_pred             EEEEeCCCCCCCCCCCC----------------------CeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHH
Confidence            34589999999877755                      999999984 2      4788999999999999 7888754


Q ss_pred             cC-----CceEEEEEEEeCCCCCCcceeEEEEEeceeccCC
Q 004872          264 EE-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  299 (726)
Q Consensus       264 ~~-----~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~  299 (726)
                      +.     .+.|.|+|||+|.. +++++||++.+++++|...
T Consensus        62 ~l~~~~~~~~l~~~V~d~d~~-~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          62 KLCNGDYDRPIKIEVYDYDSS-GKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             HhcCCCcCCEEEEEEEEeCCC-CCCcEEEEEEEEHHHHhcC
Confidence            32     57999999999986 7899999999999998843

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.38  E-value=2.4e-12  Score=117.01  Aligned_cols=96  Identities=21%  Similarity=0.310  Sum_probs=83.0

Q ss_pred             EEEEeecCCCCCCCCCCCcEEEEEECCe-------Eeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecC----C
Q 004872          384 TVVEGKDLMPKDKSGKCDPYVKLQYGKI-------VQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEI----F  450 (726)
Q Consensus       384 ~V~~a~~L~~~d~~g~~dpyv~v~lg~~-------~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~----~  450 (726)
                      ..++|++|+..+..|.+||||++++...       .++|+++ ++.||.|||+|.|.+.. ....|.|+|||++.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            4478999999998999999999999432       5999999 99999999999998543 46689999999996    5


Q ss_pred             -CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872          451 -GDENMGSARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                       ++++||++.+++.++..+.....|++|..
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence             89999999999999998777778999843

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.38  E-value=1.9e-12  Score=117.85  Aligned_cols=98  Identities=15%  Similarity=0.297  Sum_probs=78.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CC--eEeecccc-CCC-CCceeeEEEEEeeCC--ceeEEEEEEeecC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GK--IVQRTRTA-HSP-NHVWNQKFELDEIGG--GECLMVKCYNEEI  449 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~--~~~kT~~~-~t~-nP~wne~f~f~v~~~--~~~l~i~V~d~~~  449 (726)
                      +.|+|+|++|+||+.++..+.+||||+|++   ++  .++||+++ ++. ||.|||+|.|.+...  ...+.|+|||++.
T Consensus        14 ~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~   93 (135)
T cd08692          14 SRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSS   93 (135)
T ss_pred             CeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCC
Confidence            489999999999998766677899999998   22  37889999 884 699999999998764  5578899999988


Q ss_pred             C-CCcceEEEEEEccccccCCeeeeeeec
Q 004872          450 F-GDENMGSARVNLEGLVEGSVRDIWVPL  477 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L  477 (726)
                      . ++++||++.+..+... +...++|..+
T Consensus        94 ~~~n~~IG~v~lG~~~~~-~~~~~hW~~m  121 (135)
T cd08692          94 VRRKHFLGQVWISSDSSS-SEAVEQWKDT  121 (135)
T ss_pred             CcCCceEEEEEECCccCC-chhhhhHHHH
Confidence            7 8999999999997642 2234466544

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=2.8e-13  Score=136.06  Aligned_cols=208  Identities=18%  Similarity=0.284  Sum_probs=153.3

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc------cEEeeeecCCCCCCccccee-
Q 004872          186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE------ELTRRTDARPGSDPRWDSMF-  258 (726)
Q Consensus       186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g------~~~rTt~i~~t~nP~WnEtf-  258 (726)
                      -.+..+|..|++|+.++..|.-                      |||++..+.      +..||++..+++||.|||+- 
T Consensus        93 ~~~~~tl~~a~~lk~~~~~~~~----------------------d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev  150 (362)
T KOG1013|consen   93 RMLDTTLDRAKGLKPMDINGLA----------------------DPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEV  150 (362)
T ss_pred             hhcceeechhcccchhhhhhhc----------------------chHHhhhcccchhhhhhhhHHhhccCcCcceeccce
Confidence            5789999999999999987754                      999999995      23567788999999999765 


Q ss_pred             -EEEEecC--CceEEEEEEEeCCCCCCcceeEEEEEeceeccCCCcceeecCCCCccccccccccCceeeeeeecC----
Q 004872          259 -NMVLHEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFE----  331 (726)
Q Consensus       259 -~~~v~~~--~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----  331 (726)
                       .++..+.  ...+++.|.|.+.. ...+++|+..++++.|.....             +.+..|=   +..++.+    
T Consensus       151 ~~~i~~~~~~~K~~Rk~vcdn~~~-~~~~sqGq~r~~lkKl~p~q~-------------k~f~~cl---~~~lp~~rad~  213 (362)
T KOG1013|consen  151 YEGITDDDTHLKVLRKVVCDNDKK-THNESQGQSRVSLKKLKPLQR-------------KSFNICL---EKSLPSERADR  213 (362)
T ss_pred             ecccccchhhhhhhheeeccCccc-ccccCcccchhhhhccChhhc-------------chhhhhh---hccCCcccccc
Confidence             4555554  56899999999986 778999999999988874321             1111000   0001100    


Q ss_pred             --CccccEEEEEEEeeeeecCCCCCCCCCccCCCCcccccCCccccCCccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC
Q 004872          332 --GVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG  409 (726)
Q Consensus       332 --~~~~G~l~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg  409 (726)
                        ..++|++.+++.                             +.+.+. .+.|++.+|..|..+|.+|.+|||++.++.
T Consensus       214 ~~~E~rg~i~isl~-----------------------------~~s~~~-~l~vt~iRc~~l~ssDsng~sDpyvS~~l~  263 (362)
T KOG1013|consen  214 DEDEERGAILISLA-----------------------------YSSTTP-GLIVTIIRCSHLASSDSNGYSDPYVSQRLS  263 (362)
T ss_pred             cchhhccceeeeec-----------------------------cCcCCC-ceEEEEEEeeeeeccccCCCCCccceeecC
Confidence              113444443321                             111122 599999999999999999999999999992


Q ss_pred             -----CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-CCcceEEEEEEc
Q 004872          410 -----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVNL  462 (726)
Q Consensus       410 -----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~d~~iG~~~i~L  462 (726)
                           .-+++|.+. ++.||.|++.|.|.+...   ...+.|.|||.+.. ..+.+|-+...+
T Consensus       264 pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~  326 (362)
T KOG1013|consen  264 PDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG  326 (362)
T ss_pred             CCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc
Confidence                 236788888 999999999999997664   56899999999988 788888765543

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.34  E-value=5.1e-12  Score=106.79  Aligned_cols=79  Identities=35%  Similarity=0.572  Sum_probs=72.6

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEECC---eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS  585 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~  585 (726)
                      |+|+|++|+||+..+..+..||||++.+++   ..++|+++.++.+|.|||+|.|++.   ...|.|+|||++..++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            789999999999988889999999999977   6799999999999999999999963   4669999999999999999


Q ss_pred             eEEEE
Q 004872          586 IGDCV  590 (726)
Q Consensus       586 lG~~~  590 (726)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=2.3e-12  Score=138.02  Aligned_cols=174  Identities=24%  Similarity=0.362  Sum_probs=124.2

Q ss_pred             CceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCC-----
Q 004872          508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL-----  580 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~-----  580 (726)
                      -...++++|++|++|.+.|..|++||||.+.++..+.+|+++...+||+|||.|.|..+  .+.|.+.|||.|..     
T Consensus       293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlkskl  372 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKL  372 (1283)
T ss_pred             cceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHH
Confidence            34778999999999999999999999999999999999999999999999999999986  46799999998863     


Q ss_pred             ------CCCCeeEEEEEEccccCCCCceeeEEecCC-----CCCeEEEEEEEEEecCccccccCCCCCCcceeeeccchh
Q 004872          581 ------LASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITRKVPELDKRTSIDSDSSSTRAHKISGQM  649 (726)
Q Consensus       581 ------~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l~~~~p~~~~~~~~~~~~p~~k~~~~~~~~  649 (726)
                            ..|+|+|+..|.+..+..  ..+.||+|+.     ...|.|++.++..+-..++.      .||   |+-....
T Consensus       373 rqkl~resddflgqtvievrtlsg--emdvwynlekrtdksavsgairlhisveikgeekv------apy---hvqytcl  441 (1283)
T KOG1011|consen  373 RQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHISVEIKGEEKV------APY---HVQYTCL  441 (1283)
T ss_pred             HHHhhhcccccccceeEEEEeccc--chhhhcchhhccchhhccceEEEEEEEEEcCcccc------ccc---eeeehhH
Confidence                  258999999999998865  4689999974     34698888887744333222      111   0000011


Q ss_pred             hHhhhhhhccccCCCch----hhhhhcccCccchhhHHHHHHHHHHH
Q 004872          650 KQMMVKFQSLIDDDNLE----ELSTALSELETLEDSQEEYMVQLETE  692 (726)
Q Consensus       650 r~~l~k~~t~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (726)
                      .+-+=...+....-.+|    --.|.+-|.+..+.+.|+..++--+|
T Consensus       442 henlfh~~~~~~~vkip~argddawkv~fdetaqeivdefamrygie  488 (1283)
T KOG1011|consen  442 HENLFHAHTDDGEVKIPKARGDDAWKVYFDETAQEIVDEFAMRYGIE  488 (1283)
T ss_pred             hhhhHHhhhcccceeCCccCCCccceehhhhhHHHHHHHHHHHHhHH
Confidence            11111111111111111    13477778888888888887754444

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.34  E-value=3e-12  Score=158.24  Aligned_cols=113  Identities=20%  Similarity=0.408  Sum_probs=101.4

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCC--ceeEEEEEEeecCCCCc
Q 004872          378 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIFGDE  453 (726)
Q Consensus       378 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~~d~  453 (726)
                      -|.|.|+|++|+||.  +..|.+||||++.+|++ +.||+++ ++.||+|||.|.|.+.++  ...++|+|||+|.++++
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd 2056 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKS 2056 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCC
Confidence            359999999999998  44789999999999865 8899999 999999999999887775  47899999999998777


Q ss_pred             ceEEEEEEccccccCCeeeeeeeccc--cccce---eEEEEEEE
Q 004872          454 NMGSARVNLEGLVEGSVRDIWVPLEK--VNTGE---LRLQIEAT  492 (726)
Q Consensus       454 ~iG~~~i~L~~l~~~~~~~~w~~L~~--~~~G~---I~l~~~~~  492 (726)
                      .+|.+.+++.++..+.....||+|.+  .+.|+   |.+.+.|.
T Consensus      2057 ~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2057 SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred             CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence            99999999999999999999999997  45798   99999886

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.33  E-value=2.1e-11  Score=112.09  Aligned_cols=109  Identities=27%  Similarity=0.442  Sum_probs=89.7

Q ss_pred             EEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCeEeecccc-CCC-CCceeeEEEEEeeCC-ceeEEEEEEeec
Q 004872          380 KINVTVVEGKDLMPKD--KSGKCDPYVKLQY------GKIVQRTRTA-HSP-NHVWNQKFELDEIGG-GECLMVKCYNEE  448 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d--~~g~~dpyv~v~l------g~~~~kT~~~-~t~-nP~wne~f~f~v~~~-~~~l~i~V~d~~  448 (726)
                      .|+|+|++|+||+..+  ..+..||||++++      +...++|+++ ++. ||.|||+|.|.+..+ ...|.|+|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6999999999998877  5788999999999      2457899998 665 999999999998765 467999999998


Q ss_pred             CCCCcceEEEEEEccccccCCeeeeeeecccc-----ccceeEEEEEE
Q 004872          449 IFGDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEA  491 (726)
Q Consensus       449 ~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~I~l~~~~  491 (726)
                      ..++++||++.++++++..+   ..|++|.+.     ..|.|.+.++.
T Consensus        83 ~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          83 SGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence            77889999999999999544   367888652     24677777653

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.29  E-value=1.2e-11  Score=104.46  Aligned_cols=80  Identities=18%  Similarity=0.358  Sum_probs=68.1

Q ss_pred             EEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEcc----EEeeeecCCCCCCcccceeEEEEe
Q 004872          188 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE----LTRRTDARPGSDPRWDSMFNMVLH  263 (726)
Q Consensus       188 L~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~----~~rTt~i~~t~nP~WnEtf~~~v~  263 (726)
                      |+|+|++|+||+..+..+.+                      ||||++.++.    ..+|++++++.+|.|||+|.|.+.
T Consensus         1 L~v~I~~a~~L~~~~~~~~~----------------------~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~   58 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKP----------------------DPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLD   58 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSB----------------------EEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEES
T ss_pred             CEEEEEEEECCCCcccCCcc----------------------cccceeecceeeeeeeeeeeeeccccceeeeeeeeeee
Confidence            78999999999987755443                      9999999952    378888999999999999999976


Q ss_pred             cC-CceEEEEEEEeCCCCCCcceeEEEE
Q 004872          264 EE-TGTVRFNLYECIPGHVKYDYLTSCE  290 (726)
Q Consensus       264 ~~-~~~L~~~V~D~d~~~~~dd~lG~~~  290 (726)
                      .. .+.|.|+|||.+.. .++++||+|.
T Consensus        59 ~~~~~~l~~~V~~~~~~-~~~~~iG~~~   85 (85)
T PF00168_consen   59 DPDLDSLSFEVWDKDSF-GKDELIGEVK   85 (85)
T ss_dssp             HGCGTEEEEEEEEETSS-SSEEEEEEEE
T ss_pred             cccccceEEEEEECCCC-CCCCEEEEEC
Confidence            55 56699999999986 6799999984

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.29  E-value=1.5e-11  Score=111.97  Aligned_cols=91  Identities=26%  Similarity=0.434  Sum_probs=78.0

Q ss_pred             EEEEEEEEeecCcccc--cCC--CCccEEEEEECC---eEEEeEeeeCCCC--CeeeeEEEEecC---------------
Q 004872          511 WIELVIVEARDLVAAD--LRG--TSDPYVKVQYGD---LKKRTKVIFKTLN--PQWHQTLEFPDD---------------  566 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d--~~g--~~DPyv~v~~~~---~~~kT~v~~~t~n--P~wne~~~f~v~---------------  566 (726)
                      .|+|.|.+|++++..+  ..|  .+||||++.+.+   .+++|.++++++|  |.||++|.|++.               
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            3899999999976543  356  499999999965   5789999999999  999999998862               


Q ss_pred             -----------CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCc
Q 004872          567 -----------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQM  601 (726)
Q Consensus       567 -----------~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~  601 (726)
                                 ...|.++|||+|.+++|++||++.++|..+..+..
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~  126 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK  126 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence                       36799999999999999999999999998876543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd00030 C2 C2 domain

Probab=99.24  E-value=5.6e-11  Score=103.01  Aligned_cols=97  Identities=39%  Similarity=0.703  Sum_probs=87.6

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEECC-eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCeeE
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      |.|.|++|++|......+..||||++.+.+ ...+|++..++.||.|||.|.|++.   ...+.|+|||++..+.+++||
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            478999999998877778899999999988 8899999999999999999999985   488999999999988889999


Q ss_pred             EEEEEccccC-CCCceeeEEec
Q 004872          588 DCVVEYQRLP-PNQMADKWIPL  608 (726)
Q Consensus       588 ~~~i~l~~l~-~~~~~~~w~~L  608 (726)
                      .+.+++..+. .......|++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEeHHHhhhcCCcCcceecC
Confidence            9999999998 67777888875

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=1.5e-11  Score=131.94  Aligned_cols=110  Identities=37%  Similarity=0.634  Sum_probs=97.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-------
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-------  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-------  450 (726)
                      ..+.++|..|.+|..+|..|++||||.+.+|+.+.||+++ ..+||+|||.|.|.+.+..+.|.+.|||+|..       
T Consensus       295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrq  374 (1283)
T KOG1011|consen  295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQ  374 (1283)
T ss_pred             eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHH
Confidence            3799999999999999999999999999999999999999 99999999999999999999999999998741       


Q ss_pred             -----CCcceEEEEEEccccccCCeeeeeeecccc-----ccceeEEEEE
Q 004872          451 -----GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIE  490 (726)
Q Consensus       451 -----~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~I~l~~~  490 (726)
                           +|+|+|+..|.+..+.  +..+.||+|+.+     -+|.|++.+.
T Consensus       375 kl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhis  422 (1283)
T KOG1011|consen  375 KLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHIS  422 (1283)
T ss_pred             HhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEE
Confidence                 6899999999998873  456799999864     2577766554

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.16  E-value=2.6e-10  Score=99.08  Aligned_cols=92  Identities=35%  Similarity=0.525  Sum_probs=81.4

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEECCe---EEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCCCCe
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYGDL---KKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLASSS  585 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~---~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~d~~  585 (726)
                      +.+.|++|++|......+..+|||++.+.+.   ..+|+++.++.||.|||+|.|++.   ...|.|+|||++..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            6899999999998876678999999999764   799999999999999999999984   5889999999998888999


Q ss_pred             eEEEEEEccccCCCCcee
Q 004872          586 IGDCVVEYQRLPPNQMAD  603 (726)
Q Consensus       586 lG~~~i~l~~l~~~~~~~  603 (726)
                      +|.+.+++.++..+....
T Consensus        82 ~G~~~~~l~~~~~~~~~~   99 (101)
T smart00239       82 IGQVTIPLSDLLLGGRHE   99 (101)
T ss_pred             eEEEEEEHHHcccCcccc
Confidence            999999999987765443

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=99.12  E-value=2.4e-10  Score=129.28  Aligned_cols=249  Identities=23%  Similarity=0.329  Sum_probs=169.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE--eecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcc
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV--QRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN  454 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~--~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~  454 (726)
                      .++|.+++|-+|.+.|.+|.+|||+++.+|+..  -++..+ +++||+|++.|++.+..+ ...+.+.|||+|.. +|+.
T Consensus       614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~  693 (1105)
T KOG1326|consen  614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEK  693 (1105)
T ss_pred             eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccch
Confidence            578999999999999999999999999998876  555667 999999999999987766 77899999999998 7999


Q ss_pred             eEEEEEEccccccC-----Cee---------eeeeecccc--------c---------cceeEEEEEEEEecCC------
Q 004872          455 MGSARVNLEGLVEG-----SVR---------DIWVPLEKV--------N---------TGELRLQIEATRVDDN------  497 (726)
Q Consensus       455 iG~~~i~L~~l~~~-----~~~---------~~w~~L~~~--------~---------~G~I~l~~~~~~~~~~------  497 (726)
                      ||+..++|+.-...     ...         ..|..-...        .         .++. ..+.|....+.      
T Consensus       694 iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~-~~i~~~g~~~~~d~~~~  772 (1105)
T KOG1326|consen  694 IGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEV-SAIKWKGESDIYDEKEA  772 (1105)
T ss_pred             hhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCc-ceEEecChhhhhccccc
Confidence            99999998763211     011         223221110        0         0111 12222210000      


Q ss_pred             ----------------------------------------C---------------------CCCCCCCCCCceEEEEEE
Q 004872          498 ----------------------------------------E---------------------GSRGQNIGSGNGWIELVI  516 (726)
Q Consensus       498 ----------------------------------------~---------------------~~~~~~~~~~~g~L~v~v  516 (726)
                                                              +                     +.......+...-++|.+
T Consensus       773 k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrvii  852 (1105)
T KOG1326|consen  773 KTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVII  852 (1105)
T ss_pred             CCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEEE
Confidence                                                    0                     000112344567889988


Q ss_pred             EEeecCcccccC----CCCccEEEEEECC---eEEEeEeeeCCC----CCeeeeEEEEec--------------------
Q 004872          517 VEARDLVAADLR----GTSDPYVKVQYGD---LKKRTKVIFKTL----NPQWHQTLEFPD--------------------  565 (726)
Q Consensus       517 ~~a~~L~~~d~~----g~~DPyv~v~~~~---~~~kT~v~~~t~----nP~wne~~~f~v--------------------  565 (726)
                      ..-.+....|.+    ..+|-||+-.+.+   .+.+|.++++++    |-.|.-.|-|..                    
T Consensus       853 Wnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~de  932 (1105)
T KOG1326|consen  853 WNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLDE  932 (1105)
T ss_pred             eeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhcccccc
Confidence            888777665543    3579999988743   477898888754    334443333331                    


Q ss_pred             ----CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCC----------------------CceeeEEecCCC------CC
Q 004872          566 ----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN----------------------QMADKWIPLQGV------RK  613 (726)
Q Consensus       566 ----~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~----------------------~~~~~w~~L~~~------~~  613 (726)
                          ....|.|+|||.|.|++|+|||..+++|++...+                      .....|.|+...      -.
T Consensus       933 te~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l~ 1012 (1105)
T KOG1326|consen  933 TEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVLA 1012 (1105)
T ss_pred             ccccCchheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcceec
Confidence                0356999999999999999999999999865322                      234578888532      14


Q ss_pred             eEEEEEEEEEecCcccc
Q 004872          614 GEIHVLITRKVPELDKR  630 (726)
Q Consensus       614 G~i~l~l~~~~p~~~~~  630 (726)
                      |.+.+++++ +.+.++.
T Consensus      1013 Gkvem~lei-lt~~EA~ 1028 (1105)
T KOG1326|consen 1013 GKVEMSLEI-LTEKEAD 1028 (1105)
T ss_pred             ceeeeehhh-hhhhhhh
Confidence            989888887 5554443

>cd00030 C2 C2 domain

Probab=99.06  E-value=9.5e-10  Score=95.17  Aligned_cols=97  Identities=34%  Similarity=0.703  Sum_probs=85.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecCC-CCcceE
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-GDENMG  456 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~-~d~~iG  456 (726)
                      |.|.|++|++|......+..+|||.+.+.. ..++|+++ ++.||.|++.|.|.+.. ....+.|+||+.+.. .+.+||
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            468999999998766677899999999976 89999999 99999999999999877 577899999999887 689999


Q ss_pred             EEEEEccccc-cCCeeeeeeec
Q 004872          457 SARVNLEGLV-EGSVRDIWVPL  477 (726)
Q Consensus       457 ~~~i~L~~l~-~~~~~~~w~~L  477 (726)
                      .+.+++.++. .......|++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEeHHHhhhcCCcCcceecC
Confidence            9999999998 55566788765

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02223 phosphoinositide phospholipase C

Probab=99.04  E-value=2.1e-09  Score=117.89  Aligned_cols=99  Identities=17%  Similarity=0.252  Sum_probs=81.8

Q ss_pred             ceEEEEEEEEeecCccc-----ccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecCC---CeEEEEEE
Q 004872          509 NGWIELVIVEARDLVAA-----DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLHVR  575 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~-----d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~~---~~l~i~V~  575 (726)
                      ...|.|+|+.|++++..     +.....||||+|.+.+     .+++|.+..++.||+|||+|.|++..   ..|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            47899999999987511     2234679999999954     35678888889999999999999843   45899999


Q ss_pred             ECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872          576 DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  610 (726)
Q Consensus       576 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  610 (726)
                      |+|..++|+|+|++.+|+..+..|.   ++++|.+
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~  519 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYD  519 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCc---eeEeccC
Confidence            9999889999999999999999886   6677754

>PLN02270 phospholipase D alpha

Probab=99.02  E-value=2.5e-09  Score=121.99  Aligned_cols=116  Identities=22%  Similarity=0.386  Sum_probs=98.2

Q ss_pred             ceEEEEEEEEeecCcccc------------------cCCCCccEEEEEECCeE-EEeEeeeC-CCCCeeeeEEEEecC--
Q 004872          509 NGWIELVIVEARDLVAAD------------------LRGTSDPYVKVQYGDLK-KRTKVIFK-TLNPQWHQTLEFPDD--  566 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d------------------~~g~~DPyv~v~~~~~~-~kT~v~~~-t~nP~wne~~~f~v~--  566 (726)
                      .|.|.++|++|++|++.+                  ..+++||||.|.+++.+ .||+++.+ ..||.|||+|.+++.  
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            589999999999998631                  23678999999998864 59999988 469999999999984  


Q ss_pred             CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC---C---CeEEEEEEEEEecC
Q 004872          567 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV---R---KGEIHVLITRKVPE  626 (726)
Q Consensus       567 ~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~---~---~G~i~l~l~~~~p~  626 (726)
                      ...+.|.|.|.|.++. .+||.+.||..++..+...++|+++.+.   +   .-.|+++++| .|.
T Consensus        87 ~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f-~~~  150 (808)
T PLN02270         87 ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQY-FEV  150 (808)
T ss_pred             cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEE-EEc
Confidence            5789999999998874 5999999999999999999999999642   1   2489999999 554

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.00  E-value=2.4e-09  Score=92.89  Aligned_cols=90  Identities=30%  Similarity=0.563  Sum_probs=79.1

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcc
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN  454 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~---~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~  454 (726)
                      +.|.|++|++|......+..+|||++++..   ..++|+++ ++.||.||+.|.|.+... ...|.|+||+.+.. .+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            789999999998876657899999999965   48999999 888999999999998776 88999999999877 6899


Q ss_pred             eEEEEEEccccccCCe
Q 004872          455 MGSARVNLEGLVEGSV  470 (726)
Q Consensus       455 iG~~~i~L~~l~~~~~  470 (726)
                      +|.+.+++.++..+..
T Consensus        82 ~G~~~~~l~~~~~~~~   97 (101)
T smart00239       82 IGQVTIPLSDLLLGGR   97 (101)
T ss_pred             eEEEEEEHHHcccCcc
Confidence            9999999999876543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02270 phospholipase D alpha

Probab=98.99  E-value=2.9e-09  Score=121.39  Aligned_cols=119  Identities=18%  Similarity=0.336  Sum_probs=102.8

Q ss_pred             ccEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEEC-CeEeecccc-C-CCCCceeeEEEEEeeCC
Q 004872          378 GRKINVTVVEGKDLMPKD------------------KSGKCDPYVKLQYG-KIVQRTRTA-H-SPNHVWNQKFELDEIGG  436 (726)
Q Consensus       378 ~~~L~V~V~~a~~L~~~d------------------~~g~~dpyv~v~lg-~~~~kT~~~-~-t~nP~wne~f~f~v~~~  436 (726)
                      .|.|.++|.+|++|+.++                  ..+.+||||.|.++ ..+.||+++ + ..||.|+|+|.+.+...
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            358999999999998631                  12568999999995 568899999 6 46999999999999999


Q ss_pred             ceeEEEEEEeecCCCCcceEEEEEEccccccCCeeeeeeeccccc------cceeEEEEEEEEecC
Q 004872          437 GECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN------TGELRLQIEATRVDD  496 (726)
Q Consensus       437 ~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~------~G~I~l~~~~~~~~~  496 (726)
                      ...+.|.|.|.+.++..+||.+.++..++..+...+.||++.+..      ..+|+++++|.++..
T Consensus        87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~  152 (808)
T PLN02270         87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK  152 (808)
T ss_pred             cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence            899999999999988889999999999999998899999997642      358999999998654

>PLN02952 phosphoinositide phospholipase C

Probab=98.96  E-value=6.4e-09  Score=116.66  Aligned_cols=110  Identities=20%  Similarity=0.310  Sum_probs=87.0

Q ss_pred             ceEEEEEEEEeecCccc------ccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecCC---CeEEEEE
Q 004872          509 NGWIELVIVEARDLVAA------DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDDG---SPLTLHV  574 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~~---~~l~i~V  574 (726)
                      ...|.|.|+.|++++..      +.....||||+|.+-+     .+.+|+++.++.||+|||+|.|++..   ..+.|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46899999999987531      1223459999999943     56799999999999999999998742   5589999


Q ss_pred             EECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC---CCCeEEEEEEE
Q 004872          575 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG---VRKGEIHVLIT  621 (726)
Q Consensus       575 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~---~~~G~i~l~l~  621 (726)
                      +|+|..+.++++|++.+|+..+..|.   +|++|.+   ...+...+-+.
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~  595 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMR  595 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEE
Confidence            99999999999999999999999886   6999963   33344444433

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.93  E-value=5.2e-10  Score=122.03  Aligned_cols=103  Identities=27%  Similarity=0.437  Sum_probs=91.8

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECCe-------EEEeEeeeCCCC
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-------KKRTKVIFKTLN  554 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~v~~~t~n  554 (726)
                      .|.+.+++.|.              .....|.|.|+-|+++.+.|.+|.+||||.|.++..       ..+|+|+.+|+|
T Consensus       933 fg~lsvr~~y~--------------~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLn  998 (1103)
T KOG1328|consen  933 FGVLSVRAYYN--------------GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLN  998 (1103)
T ss_pred             CCceEEEEEee--------------ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhcccc
Confidence            48888888776              456789999999999999999999999999999764       459999999999


Q ss_pred             CeeeeEEEEecC-------CCeEEEEEEECCCCCCCCeeEEEEEEccccCC
Q 004872          555 PQWHQTLEFPDD-------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPP  598 (726)
Q Consensus       555 P~wne~~~f~v~-------~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~  598 (726)
                      |+|+|+|+|.|+       ...+.|+|||||-++.+||-|++.+.|.++..
T Consensus       999 PVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen  999 PVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             chhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence            999999999984       46799999999999999999999999988853

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.88  E-value=1.3e-08  Score=114.00  Aligned_cols=112  Identities=15%  Similarity=0.251  Sum_probs=87.3

Q ss_pred             CceEEEEEEEEeecCccc------ccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEE
Q 004872          508 GNGWIELVIVEARDLVAA------DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLH  573 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~  573 (726)
                      ....|.|.|+.|++++..      +.....||||+|.+-+     .+.+|++..++.||+|||+|.|++.   -..|+|+
T Consensus       467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~  546 (598)
T PLN02230        467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVE  546 (598)
T ss_pred             cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence            346799999999987421      2234579999999943     3578999999999999999999974   3678999


Q ss_pred             EEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC-----CeEEEEEEEE
Q 004872          574 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  622 (726)
Q Consensus       574 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~  622 (726)
                      |+|+|..++|+|+|++.+|+..|..|.   +.++|.+..     .-.|.+.+.+
T Consensus       547 V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        547 VHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCCCeeEEEEEe
Confidence            999999889999999999999999886   456775422     2355555544

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.88  E-value=1.9e-08  Score=109.51  Aligned_cols=173  Identities=23%  Similarity=0.294  Sum_probs=131.0

Q ss_pred             eEeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecCC-----CCcceEEEEEEccccccCCeeeeeeecc---cc
Q 004872          411 IVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF-----GDENMGSARVNLEGLVEGSVRDIWVPLE---KV  480 (726)
Q Consensus       411 ~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~-----~d~~iG~~~i~L~~l~~~~~~~~w~~L~---~~  480 (726)
                      +..+|.++ +..||.|.+.|.....- ..+.+++.+++-+..     ..+++|++...+.++........-+.++   ..
T Consensus        41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~  120 (529)
T KOG1327|consen   41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNA  120 (529)
T ss_pred             cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccC
Confidence            35688899 99999999988776544 467899999987654     5789999999999998655433333333   23


Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC--C----eEEEeEeeeCCCC
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG--D----LKKRTKVIFKTLN  554 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~--~----~~~kT~v~~~t~n  554 (726)
                      ..|.|.+.++-.              ...........+|++|..+|..+++|||..++--  .    ..++|.+++++++
T Consensus       121 ~~g~iti~aee~--------------~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~  186 (529)
T KOG1327|consen  121 GSGTITISAEED--------------ESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLN  186 (529)
T ss_pred             CcccEEEEeecc--------------cccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCC
Confidence            578888888633              1122334455669999999999999999998862  2    3569999999999


Q ss_pred             CeeeeEEE-E-----ecCCCeEEEEEEECCCCCCCCeeEEEEEEccccC
Q 004872          555 PQWHQTLE-F-----PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP  597 (726)
Q Consensus       555 P~wne~~~-f-----~v~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~  597 (726)
                      |.|.+... +     ...+..+.+++||++..+++++||++..++..+.
T Consensus       187 p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  187 PQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ  235 (529)
T ss_pred             CcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence            99987221 1     1236889999999999999999999998888775

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=98.87  E-value=1.3e-08  Score=92.89  Aligned_cols=89  Identities=25%  Similarity=0.306  Sum_probs=74.8

Q ss_pred             EEEEEEEeecCCCCC--CCCC--CCcEEEEEE-C--CeEeecccc-CCCC--CceeeEEEEEeeC---------------
Q 004872          381 INVTVVEGKDLMPKD--KSGK--CDPYVKLQY-G--KIVQRTRTA-HSPN--HVWNQKFELDEIG---------------  435 (726)
Q Consensus       381 L~V~V~~a~~L~~~d--~~g~--~dpyv~v~l-g--~~~~kT~~~-~t~n--P~wne~f~f~v~~---------------  435 (726)
                      |+|.|.+|++++..+  ..|.  +||||++.+ +  ...++|.+. ++.|  |.||+.|.|.+..               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            899999999965433  3564  999999999 3  468999999 9999  9999999988554               


Q ss_pred             ---------CceeEEEEEEeecCC-CCcceEEEEEEccccccCC
Q 004872          436 ---------GGECLMVKCYNEEIF-GDENMGSARVNLEGLVEGS  469 (726)
Q Consensus       436 ---------~~~~l~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~  469 (726)
                               ....|.++|||.|.+ .|++||.+.++|..+..+.
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                     135799999999998 8999999999999987654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02223 phosphoinositide phospholipase C

Probab=98.83  E-value=1.5e-08  Score=111.26  Aligned_cols=94  Identities=13%  Similarity=0.210  Sum_probs=73.2

Q ss_pred             ccEEEEEEEeecCCCCC--CCCCCCcccccccCCCCccccccCCCCcCcEEEEEE-c-----cEEeeeecCCCCCCcccc
Q 004872          185 GGIVYVRVISASKLSRS--SLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-E-----ELTRRTDARPGSDPRWDS  256 (726)
Q Consensus       185 ~GvL~V~v~~A~~L~~~--~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~-g-----~~~rTt~i~~t~nP~WnE  256 (726)
                      ...|.|+|++|.++...  ...|..                   ..+||||+|++ |     ...+|++..++.||+|||
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~-------------------s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne  468 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRL-------------------SKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGE  468 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCC-------------------CCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecc
Confidence            36799999999998621  111110                   11499999999 3     234666667899999999


Q ss_pred             eeEEEEecC-CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872          257 MFNMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  298 (726)
Q Consensus       257 tf~~~v~~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~  298 (726)
                      +|.|.+..+ -..|+|+|||+|.. .+++++|.+.+|+..|..
T Consensus       469 ~F~F~i~~PELAlLrf~V~D~D~~-~~ddfiGQ~~LPv~~Lr~  510 (537)
T PLN02223        469 EFTFPLTYPDLALISFEVYDYEVS-TADAFCGQTCLPVSELIE  510 (537)
T ss_pred             eeEEEEEccCceEEEEEEEecCCC-CCCcEEEEEecchHHhcC
Confidence            999999777 45799999999986 789999999999999874

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.82  E-value=3.7e-08  Score=110.26  Aligned_cols=99  Identities=20%  Similarity=0.272  Sum_probs=81.1

Q ss_pred             ceEEEEEEEEeecCc----c--cccCCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEE
Q 004872          509 NGWIELVIVEARDLV----A--ADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHV  574 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~----~--~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V  574 (726)
                      ...|+|+|+.|++++    .  .+.....||||+|.+.+     .+.+|+++.++.||+|||+|.|++.   -..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            467999999998753    1  12234679999999943     4679999999999999999999874   36789999


Q ss_pred             EECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872          575 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  610 (726)
Q Consensus       575 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  610 (726)
                      +|+|..+.|+|+|++.+|+..|..|.   +.++|.+
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~  563 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHS  563 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCcc---ceEEccC
Confidence            99998888999999999999999886   4567754

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.80  E-value=5.9e-09  Score=119.33  Aligned_cols=114  Identities=25%  Similarity=0.386  Sum_probs=101.6

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  556 (726)
                      +|+|+++++|.                .|.|.|.|.-|++|+-...+..+||||+.++..     .+.||+++++|.||.
T Consensus      1512 ggqV~LsIsY~----------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PT 1575 (1639)
T KOG0905|consen 1512 GGQVKLSISYN----------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPT 1575 (1639)
T ss_pred             CceEEEEEEEc----------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCc
Confidence            57999999987                499999999999998777777899999999954     367999999999999


Q ss_pred             eeeEEEEe------cCCCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872          557 WHQTLEFP------DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  611 (726)
Q Consensus       557 wne~~~f~------v~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  611 (726)
                      |||.+.+.      .....|.++||..+.+..+.++|.+.++|.+++..++...||+|...
T Consensus      1576 fnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1576 FNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred             hhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence            99999887      24689999999999999999999999999999888888899999753

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.77  E-value=2.8e-08  Score=84.99  Aligned_cols=86  Identities=16%  Similarity=0.305  Sum_probs=67.4

Q ss_pred             EEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEccE--EeeeecCCCCCCcccceeEEEEecC
Q 004872          188 VYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEEL--TRRTDARPGSDPRWDSMFNMVLHEE  265 (726)
Q Consensus       188 L~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~~--~rTt~i~~t~nP~WnEtf~~~v~~~  265 (726)
                      |.|+|+.|+|+...+...                  +. +.+||||.|.++..  .||+.   +.||+|||+|.|.| +.
T Consensus         1 L~I~V~~~RdvdH~~~~~------------------~~-~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk   57 (109)
T cd08689           1 LTITITSARDVDHIASPR------------------FS-KRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EK   57 (109)
T ss_pred             CEEEEEEEecCccccchh------------------hc-cCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cC
Confidence            689999999998776211                  11 11399999999865  44444   58999999999999 56


Q ss_pred             CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872          266 TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  298 (726)
Q Consensus       266 ~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~  298 (726)
                      ...+.|.|||....  ..-.+|-.-+.+.+|.+
T Consensus        58 ~nEiel~VyDk~~~--~~~Pi~llW~~~sdi~E   88 (109)
T cd08689          58 NNEEEVIVYDKGGD--QPVPVGLLWLRLSDIAE   88 (109)
T ss_pred             CcEEEEEEEeCCCC--eecceeeehhhHHHHHH
Confidence            78899999999753  66689999999998875

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02228 Phosphoinositide phospholipase C

Probab=98.76  E-value=8.1e-08  Score=107.26  Aligned_cols=111  Identities=15%  Similarity=0.178  Sum_probs=88.1

Q ss_pred             ceEEEEEEEEeecCcc---c---ccCCCCccEEEEEECC-----eEEEeEeeeCCCCCee-eeEEEEecC---CCeEEEE
Q 004872          509 NGWIELVIVEARDLVA---A---DLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQW-HQTLEFPDD---GSPLTLH  573 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~---~---d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~w-ne~~~f~v~---~~~l~i~  573 (726)
                      ...|+|+|+.|++|+.   .   +.....||||+|.+.+     .+++|+++.++.||+| ||+|.|++.   -..|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            4579999999998731   1   1233479999999843     4679999988999999 999999974   2578999


Q ss_pred             EEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC-----CeEEEEEEEE
Q 004872          574 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  622 (726)
Q Consensus       574 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~  622 (726)
                      |+|+|..+.|+++|++.+|++.|..|.   +.++|.+..     ...|.+.+.+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~  560 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFAL  560 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEE
Confidence            999998889999999999999998876   456775322     3667877777

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.74  E-value=2.9e-08  Score=105.94  Aligned_cols=113  Identities=28%  Similarity=0.556  Sum_probs=97.5

Q ss_pred             eEEEEEEEEeecCccccc-CCCCccEEEEEECCeEEEeEeeeCCCCCeee-eEEEEecC-----CCeEEEEEEECCCCCC
Q 004872          510 GWIELVIVEARDLVAADL-RGTSDPYVKVQYGDLKKRTKVIFKTLNPQWH-QTLEFPDD-----GSPLTLHVRDHNALLA  582 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wn-e~~~f~v~-----~~~l~i~V~d~d~~~~  582 (726)
                      |.|.|.|..|++||.+|. ....|.||.+.+++..+||.+..+++||.|| +-|.|.|+     +..|.|.++|||.++.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa   82 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA   82 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence            788999999999999885 4567999999999999999999999999999 57888874     5789999999999999


Q ss_pred             CCeeEEEEEEccccCC----------CCceeeEEecCC---CCCeEEEEEEEE
Q 004872          583 SSSIGDCVVEYQRLPP----------NQMADKWIPLQG---VRKGEIHVLITR  622 (726)
Q Consensus       583 d~~lG~~~i~l~~l~~----------~~~~~~w~~L~~---~~~G~i~l~l~~  622 (726)
                      ++-||.+.|+++.+..          +.....|+++.+   .-+|||.+-+..
T Consensus        83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv  135 (1169)
T KOG1031|consen   83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV  135 (1169)
T ss_pred             ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence            9999999999987632          234678999865   347999887776

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.73  E-value=7.4e-08  Score=104.89  Aligned_cols=180  Identities=21%  Similarity=0.316  Sum_probs=126.3

Q ss_pred             cEEeeeecCCCCCCcccceeEEEEec-CCceEEEEEEEeCCC---CCCcceeEEEEEeceeccCCCcceeecCCCCcccc
Q 004872          239 ELTRRTDARPGSDPRWDSMFNMVLHE-ETGTVRFNLYECIPG---HVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIA  314 (726)
Q Consensus       239 ~~~rTt~i~~t~nP~WnEtf~~~v~~-~~~~L~~~V~D~d~~---~~~dd~lG~~~i~L~~l~~~~~~~~~~~~~~~~~~  314 (726)
                      ++.||.++.+.+||.|-++|.+..+- ..|.|+|+++|.+..   ....|++|+++..+.++.......           
T Consensus        41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~-----------  109 (529)
T KOG1327|consen   41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT-----------  109 (529)
T ss_pred             cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh-----------
Confidence            55789999999999999999888544 489999999998864   135689999999999888543210           


Q ss_pred             ccccccCceeeeeeecCCccccEEEEEEEeeeeecCCCCCCCCCccCCCCcccccCCccccCCccEEEEEEEEeecCCCC
Q 004872          315 KHAEFCGDEVEMTVPFEGVNSGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPK  394 (726)
Q Consensus       315 ~~~~~~g~~~~~~~~~~~~~~G~l~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~L~V~V~~a~~L~~~  394 (726)
                      ...       .+. +-....+|.+.+..  +.+     .                       .......-..+|++|..+
T Consensus       110 ~~l-------~~~-~~~~~~~g~iti~a--ee~-----~-----------------------~~~~~~~~~~~~~~ld~k  151 (529)
T KOG1327|consen  110 GPL-------LLK-PGKNAGSGTITISA--EED-----E-----------------------SDNDVVQFSFRAKNLDPK  151 (529)
T ss_pred             hhh-------hcc-cCccCCcccEEEEe--ecc-----c-----------------------ccCceeeeeeeeeecCcc
Confidence            000       000 00111245554331  110     0                       000233344568999999


Q ss_pred             CCCCCCCcEEEEEE--C----CeEeecccc-CCCCCceeeEEE----EEeeCCceeEEEEEEeecCC-CCcceEEEEEEc
Q 004872          395 DKSGKCDPYVKLQY--G----KIVQRTRTA-HSPNHVWNQKFE----LDEIGGGECLMVKCYNEEIF-GDENMGSARVNL  462 (726)
Q Consensus       395 d~~g~~dpyv~v~l--g----~~~~kT~~~-~t~nP~wne~f~----f~v~~~~~~l~i~V~d~~~~-~d~~iG~~~i~L  462 (726)
                      |..+++|||..++-  +    ...++|.++ ++++|.|.+...    +...+....+.+.+||.+.. ++++||.+..++
T Consensus       152 d~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~  231 (529)
T KOG1327|consen  152 DFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTL  231 (529)
T ss_pred             cccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccH
Confidence            99999999999877  2    247999999 999999976321    22223467899999999988 679999999999


Q ss_pred             ccccc
Q 004872          463 EGLVE  467 (726)
Q Consensus       463 ~~l~~  467 (726)
                      .++..
T Consensus       232 ~~~~~  236 (529)
T KOG1327|consen  232 SELQE  236 (529)
T ss_pred             HHhcc
Confidence            99864

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.71  E-value=5.3e-08  Score=108.97  Aligned_cols=98  Identities=21%  Similarity=0.340  Sum_probs=80.5

Q ss_pred             eEEEEEEEEeecCccc-c---cCCCCccEEEEEECC-----eEEEeE-eeeCCCCCeeeeEEEEecC---CCeEEEEEEE
Q 004872          510 GWIELVIVEARDLVAA-D---LRGTSDPYVKVQYGD-----LKKRTK-VIFKTLNPQWHQTLEFPDD---GSPLTLHVRD  576 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~-d---~~g~~DPyv~v~~~~-----~~~kT~-v~~~t~nP~wne~~~f~v~---~~~l~i~V~d  576 (726)
                      -.|.|.|+.|++++.. +   .+..+||||.|.+.+     ...+|+ +..++.||.|+|+|+|++.   -.-|+|.|+|
T Consensus       616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d  695 (746)
T KOG0169|consen  616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD  695 (746)
T ss_pred             ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence            3799999999976533 2   245789999999955     367899 5556999999999999984   3568999999


Q ss_pred             CCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872          577 HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  610 (726)
Q Consensus       577 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  610 (726)
                      +|..++|+|+|+.++|+..|..|..   -++|.+
T Consensus       696 ~d~~~~ddF~GQ~tlP~~~L~~GyR---hVpL~~  726 (746)
T KOG0169|consen  696 YDYIGKDDFIGQTTLPVSELRQGYR---HVPLLS  726 (746)
T ss_pred             cCCCCcccccceeeccHHHhhCcee---eeeecC
Confidence            9999999999999999999998864   456654

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.69  E-value=5.6e-08  Score=83.18  Aligned_cols=82  Identities=21%  Similarity=0.393  Sum_probs=69.7

Q ss_pred             EEEEEEEeecCcccc---cCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCCee
Q 004872          512 IELVIVEARDLVAAD---LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSI  586 (726)
Q Consensus       512 L~v~v~~a~~L~~~d---~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~d~~l  586 (726)
                      |.|+|..|+|+...+   ..+.+||||.+.+++. +.||++   +.||.|||+|.|+++ ...+.+.|||... ...-.|
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk~nEiel~VyDk~~-~~~~Pi   76 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEKNNEEEVIVYDKGG-DQPVPV   76 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecCCcEEEEEEEeCCC-Ceecce
Confidence            578999999998777   6788899999999886 889987   489999999999996 6789999999864 334578


Q ss_pred             EEEEEEccccC
Q 004872          587 GDCVVEYQRLP  597 (726)
Q Consensus       587 G~~~i~l~~l~  597 (726)
                      |-..+.++++.
T Consensus        77 ~llW~~~sdi~   87 (109)
T cd08689          77 GLLWLRLSDIA   87 (109)
T ss_pred             eeehhhHHHHH
Confidence            88888888774

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.62  E-value=2e-07  Score=103.36  Aligned_cols=113  Identities=20%  Similarity=0.259  Sum_probs=89.9

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEECC------eEEEeEeeeCCCCCeee-eEEEEecCC---CeEEEEEEECCC
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQWH-QTLEFPDDG---SPLTLHVRDHNA  579 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~wn-e~~~f~v~~---~~l~i~V~d~d~  579 (726)
                      -.|.|.|+.|+.|+.. ..|...|||.|.+-+      ..++|.|..+++||+|| |.|+|.+.+   .-|++.|+|.|.
T Consensus      1065 ~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred             eEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence            5788999999999944 456678999999944      34456667789999999 999999965   468999999999


Q ss_pred             CCCCCeeEEEEEEccccCCCCceeeEEecCCCCC-----eEEEEEEEEEecCc
Q 004872          580 LLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRK-----GEIHVLITRKVPEL  627 (726)
Q Consensus       580 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~-----G~i~l~l~~~~p~~  627 (726)
                      ++...|||+++.|+..+..|-   +-++|.+...     ..|++.+.. .|..
T Consensus      1144 fs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m-~~~~ 1192 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEM-RPVL 1192 (1267)
T ss_pred             cCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEe-cccc
Confidence            999999999999999998764   5678887654     445666665 4443

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.62  E-value=1.3e-07  Score=106.07  Aligned_cols=97  Identities=14%  Similarity=0.103  Sum_probs=73.9

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE-c-----cEEeeeecCCCCCCccccee
Q 004872          185 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-E-----ELTRRTDARPGSDPRWDSMF  258 (726)
Q Consensus       185 ~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~-g-----~~~rTt~i~~t~nP~WnEtf  258 (726)
                      ...|.|+|+++.+++......         ..|.       +..+||||+|.+ |     ...+|+++.++.||+|||+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~---------~~~~-------~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef  531 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKT---------HFDS-------YSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEF  531 (598)
T ss_pred             CcEEEEEEEEccCccCCCccc---------cCCC-------CCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCee
Confidence            368999999999875321100         0011       112599999999 4     23567777899999999999


Q ss_pred             EEEEecC-CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872          259 NMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  298 (726)
Q Consensus       259 ~~~v~~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~  298 (726)
                      .|.+.-+ -..|+|.|+|+|.. .++|++|.+.+|+..|..
T Consensus       532 ~F~l~vPELAllRf~V~d~d~~-~~ddfiGQ~~lPv~~Lr~  571 (598)
T PLN02230        532 IFPLAVPELALLRVEVHEHDIN-EKDDFGGQTCLPVSEIRQ  571 (598)
T ss_pred             EEEEEcCceeEEEEEEEECCCC-CCCCEEEEEEcchHHhhC
Confidence            9998766 47899999999975 689999999999999874

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.59  E-value=2.6e-07  Score=103.49  Aligned_cols=95  Identities=12%  Similarity=0.119  Sum_probs=73.6

Q ss_pred             ccEEEEEEEeecCCCC--CCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE-c-----cEEeeeecCCCCCCcccc
Q 004872          185 GGIVYVRVISASKLSR--SSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-E-----ELTRRTDARPGSDPRWDS  256 (726)
Q Consensus       185 ~GvL~V~v~~A~~L~~--~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~-g-----~~~rTt~i~~t~nP~WnE  256 (726)
                      ...|.|+|++|.+++-  .....           +       ..+.+||||+|.+ |     ...||+++.++.||+|||
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~-----------~-------~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e  512 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHF-----------D-------QYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDE  512 (581)
T ss_pred             cceEEEEEEEcccccCCCCcccc-----------C-------CCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCC
Confidence            3579999999998531  11100           0       1123599999999 3     246788888889999999


Q ss_pred             eeEEEEecC-CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872          257 MFNMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  298 (726)
Q Consensus       257 tf~~~v~~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~  298 (726)
                      +|.|.+..+ -..|+|.|||+|.. ..++++|.+.+|+..|..
T Consensus       513 ~f~F~i~~PeLAllRf~V~d~D~~-~~ddfigq~~lPv~~Lr~  554 (581)
T PLN02222        513 VFEFPLTVPELALLRLEVHEYDMS-EKDDFGGQTCLPVWELSQ  554 (581)
T ss_pred             eeEEEEEcCceeEEEEEEEECCCC-CCCcEEEEEEcchhhhhC
Confidence            999998766 47899999999975 689999999999998874

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.54  E-value=1.8e-07  Score=104.76  Aligned_cols=93  Identities=15%  Similarity=0.182  Sum_probs=74.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE-c-----cEEeeeec-CCCCCCcccceeE
Q 004872          187 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-E-----ELTRRTDA-RPGSDPRWDSMFN  259 (726)
Q Consensus       187 vL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~-g-----~~~rTt~i-~~t~nP~WnEtf~  259 (726)
                      .|.|+|+++.++......+.                  .|..+||||.|++ |     ...+|+++ .++-||.|+|+|.
T Consensus       617 tL~IkI~sGq~~~~~~~~~~------------------~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~  678 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTK------------------FGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFE  678 (746)
T ss_pred             eeEEEEEecCcccCCCCCCc------------------ccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEE
Confidence            79999999997765432111                  1223499999999 3     24678855 5889999999999


Q ss_pred             EEEecC-CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872          260 MVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  298 (726)
Q Consensus       260 ~~v~~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~  298 (726)
                      |.++.+ -.-|+|.|+|+|.. .+|||+|+..+|+.+|..
T Consensus       679 F~l~vPELAliRF~V~d~d~~-~~ddF~GQ~tlP~~~L~~  717 (746)
T KOG0169|consen  679 FQLSVPELALIRFEVHDYDYI-GKDDFIGQTTLPVSELRQ  717 (746)
T ss_pred             EEEeccceeEEEEEEEecCCC-CcccccceeeccHHHhhC
Confidence            999887 47899999999986 789999999999999874

>PLN02952 phosphoinositide phospholipase C

Probab=98.49  E-value=1.5e-06  Score=97.83  Aligned_cols=99  Identities=20%  Similarity=0.249  Sum_probs=80.8

Q ss_pred             cEEEEEEEEeecCCCC------CCCCCCCcEEEEEE-C----CeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEE
Q 004872          379 RKINVTVVEGKDLMPK------DKSGKCDPYVKLQY-G----KIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCY  445 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~------d~~g~~dpyv~v~l-g----~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~  445 (726)
                      ..|.|+|+.|.+++..      +....+||||+|.+ |    ...++|+++ ++.||+||++|.|.+..+ -..+.|.|+
T Consensus       470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~  549 (599)
T PLN02952        470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR  549 (599)
T ss_pred             ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence            4799999999987421      11234699999999 3    457899999 889999999999998776 467899999


Q ss_pred             eecCC-CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872          446 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  480 (726)
Q Consensus       446 d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  480 (726)
                      |+|.. .++++|+..+++..|..+-   +|++|.+.
T Consensus       550 D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~  582 (599)
T PLN02952        550 EYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDK  582 (599)
T ss_pred             ecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCC
Confidence            99887 7999999999999997764   68888753

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.47  E-value=5.3e-07  Score=96.49  Aligned_cols=112  Identities=20%  Similarity=0.428  Sum_probs=94.0

Q ss_pred             cEEEEEEEEeecCCCCCCC-CCCCcEEEEEECCeEeecccc-CCCCCcee-eEEEEEeeC---CceeEEEEEEeecCC-C
Q 004872          379 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYGKIVQRTRTA-HSPNHVWN-QKFELDEIG---GGECLMVKCYNEEIF-G  451 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg~~~~kT~~~-~t~nP~wn-e~f~f~v~~---~~~~l~i~V~d~~~~-~  451 (726)
                      |.|.|.|..||+|+.+|.. ...|.||++++++..+||.+. +++||.|| +.|.|.+.+   .++.|.|.+.|+|.. .
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa   82 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA   82 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence            4799999999999998864 568999999999999999999 99999997 568888766   377999999999988 8


Q ss_pred             CcceEEEEEEccccccC----------Ceeeeeeecccc---ccceeEEEEE
Q 004872          452 DENMGSARVNLEGLVEG----------SVRDIWVPLEKV---NTGELRLQIE  490 (726)
Q Consensus       452 d~~iG~~~i~L~~l~~~----------~~~~~w~~L~~~---~~G~I~l~~~  490 (726)
                      ++-||.+.|+++.+...          .....|||+.+.   -+|+|.+-+.
T Consensus        83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk  134 (1169)
T KOG1031|consen   83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK  134 (1169)
T ss_pred             ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence            89999999999987622          245789998764   3688876554

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.46  E-value=5.6e-07  Score=99.96  Aligned_cols=88  Identities=22%  Similarity=0.340  Sum_probs=71.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE-c-----cEEeee-ecCCCCCCccc-cee
Q 004872          187 IVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL-E-----ELTRRT-DARPGSDPRWD-SMF  258 (726)
Q Consensus       187 vL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~-g-----~~~rTt-~i~~t~nP~Wn-Etf  258 (726)
                      .|.|.|+.||.|+.... |.                      +-|||+|++ |     ...+|+ ++.+++||+|| |+|
T Consensus      1066 ~lsv~vigaRHL~k~gr-~i----------------------~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~f 1122 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKLGR-SI----------------------ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKF 1122 (1267)
T ss_pred             EEEEEEeeccccccCCC-Cc----------------------cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcce
Confidence            57899999999995421 11                      259999999 3     344554 56799999999 999


Q ss_pred             EEEEecC-CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872          259 NMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  298 (726)
Q Consensus       259 ~~~v~~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~  298 (726)
                      .|.+.++ -..|+|.|||.|.+ ....|||.+.+|++.+..
T Consensus      1123 tFeI~nPe~A~lRF~V~eeDmf-s~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1123 TFEIYNPEFAFLRFVVYEEDMF-SDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred             EEEeeCCceEEEEEEEeccccc-CCcceeeeeecchhhhhc
Confidence            9999988 57999999999987 566799999999988763

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.46  E-value=5.1e-08  Score=106.89  Aligned_cols=89  Identities=19%  Similarity=0.250  Sum_probs=78.1

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc--------cEEeeeecCCCCCCcccce
Q 004872          186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE--------ELTRRTDARPGSDPRWDSM  257 (726)
Q Consensus       186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g--------~~~rTt~i~~t~nP~WnEt  257 (726)
                      -.|.|.|..|+++-+.|.+|.|                      ||||.|+++        ...||+++++|+||+|+|+
T Consensus       947 q~L~veVlhA~diipLD~NGlS----------------------DPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~ 1004 (1103)
T KOG1328|consen  947 QTLVVEVLHAKDIIPLDSNGLS----------------------DPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDET 1004 (1103)
T ss_pred             cchhhhhhccccccccCCCCCC----------------------CCeEEEEeccccccccchhhhhhhhhccccchhhhh
Confidence            4577889999999999999887                      999999997        2467999999999999999


Q ss_pred             eEEEEecC-----CceEEEEEEEeCCCCCCcceeEEEEEeceecc
Q 004872          258 FNMVLHEE-----TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVA  297 (726)
Q Consensus       258 f~~~v~~~-----~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~  297 (726)
                      |+|.|...     ...|.|.|+|+|.. ..+||=|++.+.|+++.
T Consensus      1005 FeFsVp~e~c~te~Am~~FTVMDHD~L-~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1005 FEFSVPPEPCSTETAMLHFTVMDHDYL-RSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             eeeecCccccccccceEEEEeecccee-cccccchHHHHhhCCCC
Confidence            99998653     44799999999986 89999999999998876

>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1

Probab=98.35  E-value=8.9e-07  Score=75.81  Aligned_cols=72  Identities=13%  Similarity=0.264  Sum_probs=61.8

Q ss_pred             cCCCCchhHHHHHHHHHHHHHHhhcC-CcccceEEEeEEeeCCCCcccceeeeEeCCCCCEEEEEEeEEecCC
Q 004872            3 VWPGYINPKLSIRFSQIVEKRLKHRK-PRLIEKIELQEFSLGSTSPCLGLHGTRWSSSGDQRVMQLGFDWDAN   74 (726)
Q Consensus         3 ~W~~~~~~~~s~~~~~~ve~~l~~~~-P~~i~~~~~~~f~lG~~pp~i~~v~~~~~~~~d~~~~d~~~~~~~~   74 (726)
                      ||-.+=++++...+++.++..|+... |+||++|++++++||+.||.|.+++......++...+|++++|.++
T Consensus         8 f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~   80 (91)
T PF10296_consen    8 FFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG   80 (91)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence            34444467889999999999999855 9999999999999999999999999876566666999999999974

These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].

>PLN02228 Phosphoinositide phospholipase C

Probab=98.29  E-value=7.8e-06  Score=91.64  Aligned_cols=110  Identities=19%  Similarity=0.174  Sum_probs=84.5

Q ss_pred             EEEEEEEEeecCCC---CC---CCCCCCcEEEEEE-----CCeEeecccc-CCCCCce-eeEEEEEeeCC-ceeEEEEEE
Q 004872          380 KINVTVVEGKDLMP---KD---KSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVW-NQKFELDEIGG-GECLMVKCY  445 (726)
Q Consensus       380 ~L~V~V~~a~~L~~---~d---~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~w-ne~f~f~v~~~-~~~l~i~V~  445 (726)
                      .|.|+|+.|++|+.   .+   .....||||+|.+     +...++|+++ ++.||.| |+.|.|.+..+ -..|+|.|+
T Consensus       432 ~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~  511 (567)
T PLN02228        432 TLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQ  511 (567)
T ss_pred             eEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEE
Confidence            79999999998731   11   2234799999998     2346899999 8899999 99999998776 468999999


Q ss_pred             eecCC-CCcceEEEEEEccccccCCeeeeeeeccccc-----cceeEEEEEEE
Q 004872          446 NEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEAT  492 (726)
Q Consensus       446 d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~~~~  492 (726)
                      |++.. .++++|+..+++..|..+-   +.++|.+..     .+.|.+.+.+.
T Consensus       512 D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~~atLfv~~~~~  561 (567)
T PLN02228        512 DYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYKNTRLLVSFALD  561 (567)
T ss_pred             eCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCCCeEEEEEEEEc
Confidence            99876 7899999999999997654   456775532     24566666544

>PLN02352 phospholipase D epsilon

Probab=98.29  E-value=4.2e-06  Score=95.83  Aligned_cols=113  Identities=17%  Similarity=0.247  Sum_probs=85.8

Q ss_pred             CCceEEEEEEEEeecCccc----cc-CCCCccEEEEEECCeE-EEeEeeeCCCCCeeeeEEEEecC--C-CeEEEEEEEC
Q 004872          507 SGNGWIELVIVEARDLVAA----DL-RGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD--G-SPLTLHVRDH  577 (726)
Q Consensus       507 ~~~g~L~v~v~~a~~L~~~----d~-~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~--~-~~l~i~V~d~  577 (726)
                      .-.|.|.++|++|+-+...    +. ....||||.|.+++.+ .||   .+.-||+|||+|.+++.  . ..+.|.|.| 
T Consensus         7 ~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-   82 (758)
T PLN02352          7 FFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-   82 (758)
T ss_pred             ccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-
Confidence            3458999999999843221    11 1123999999998864 478   55669999999999984  3 569999998 


Q ss_pred             CCCCCCCeeEEEEEEccccCCCCc-eeeEEecCCCC----C-eEEEEEEEEEecCcc
Q 004872          578 NALLASSSIGDCVVEYQRLPPNQM-ADKWIPLQGVR----K-GEIHVLITRKVPELD  628 (726)
Q Consensus       578 d~~~~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~~~----~-G~i~l~l~~~~p~~~  628 (726)
                          ...+||.+.||..++..+.. .+.|+++.+..    . ..|+++++| .|...
T Consensus        83 ----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~  134 (758)
T PLN02352         83 ----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWF-RPAEL  134 (758)
T ss_pred             ----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEE-EEhhh
Confidence                25699999999999988765 99999996421    2 499999999 66543

>PLN02352 phospholipase D epsilon

Probab=98.20  E-value=1e-05  Score=92.78  Aligned_cols=114  Identities=18%  Similarity=0.246  Sum_probs=89.5

Q ss_pred             ccEEEEEEEEeecCCCC----CC-CCCCCcEEEEEEC-CeEeeccccCCCCCceeeEEEEEeeCCc-eeEEEEEEeecCC
Q 004872          378 GRKINVTVVEGKDLMPK----DK-SGKCDPYVKLQYG-KIVQRTRTAHSPNHVWNQKFELDEIGGG-ECLMVKCYNEEIF  450 (726)
Q Consensus       378 ~~~L~V~V~~a~~L~~~----d~-~g~~dpyv~v~lg-~~~~kT~~~~t~nP~wne~f~f~v~~~~-~~l~i~V~d~~~~  450 (726)
                      .|.|.++|.+|+-+...    +. ....+|||.|.++ ..+.||  .+..||.|+|+|.+.+.... ..+.|.|.|    
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt--~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~----   82 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT--SHEYDRVWNQTFQILCAHPLDSTITITLKT----   82 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC--CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence            35899999999844221    11 1223999999995 557788  43449999999999998876 789999988    


Q ss_pred             CCcceEEEEEEccccccCCe-eeeeeeccccc----c-ceeEEEEEEEEecCC
Q 004872          451 GDENMGSARVNLEGLVEGSV-RDIWVPLEKVN----T-GELRLQIEATRVDDN  497 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~-~~~w~~L~~~~----~-G~I~l~~~~~~~~~~  497 (726)
                      +..+||.+.++..++..+.. .+.||++.+..    . .+|+++++|.++...
T Consensus        83 ~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  135 (758)
T PLN02352         83 KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE  135 (758)
T ss_pred             CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence            36799999999999998865 89999997642    2 589999999997643

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.19  E-value=2.1e-06  Score=99.07  Aligned_cols=102  Identities=18%  Similarity=0.207  Sum_probs=87.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--C---CeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeec
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--G---KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE  448 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g---~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~  448 (726)
                      ++|.|.|+.|++|+-...+..+||||+.++  +   ..+.||+++ +|.||.|||...+....    .+..|.+.||..+
T Consensus      1524 ~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~ 1603 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNG 1603 (1639)
T ss_pred             ceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeeccc
Confidence            489999999999976666788999999999  2   347899999 99999999999887333    2578999999998


Q ss_pred             CC-CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872          449 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  480 (726)
Q Consensus       449 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  480 (726)
                      .. .+.++|.+.++|.++....+...||+|...
T Consensus      1604 ~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1604 GLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred             ceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence            88 788999999999999877777799999764

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.13  E-value=4.8e-06  Score=73.57  Aligned_cols=97  Identities=21%  Similarity=0.383  Sum_probs=75.5

Q ss_pred             EEEEEEEeecCccccc-------------CCCCccEEEEEE----CCeEEEeEeeeCCCCCeeeeEEEEecC--------
Q 004872          512 IELVIVEARDLVAADL-------------RGTSDPYVKVQY----GDLKKRTKVIFKTLNPQWHQTLEFPDD--------  566 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~-------------~g~~DPyv~v~~----~~~~~kT~v~~~t~nP~wne~~~f~v~--------  566 (726)
                      |.|.|.+|.+|.++..             .-..++||++.+    .++..+|+++.++..|.|+.+++|+++        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            4678899999874321             112489999996    346789999999999999999999862        


Q ss_pred             ----------CCeEEEEEEECCCC----------CCCCeeEEEEEEccccC-CCCceeeEEec
Q 004872          567 ----------GSPLTLHVRDHNAL----------LASSSIGDCVVEYQRLP-PNQMADKWIPL  608 (726)
Q Consensus       567 ----------~~~l~i~V~d~d~~----------~~d~~lG~~~i~l~~l~-~~~~~~~w~~L  608 (726)
                                ...+.++||+.+.-          .+|-.||.+.||+.+|. .......||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence                      46799999987642          24668999999999985 44578899985

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.90  E-value=0.0014  Score=69.39  Aligned_cols=211  Identities=16%  Similarity=0.187  Sum_probs=151.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC--------CceeEEEEEEeecCC-
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG--------GGECLMVKCYNEEIF-  450 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~--------~~~~l~i~V~d~~~~-  450 (726)
                      +.|.|.+|++.+..   ....-.+..+++++...|..+ ++..|.||..+...+..        ....|++++|.-+.. 
T Consensus         2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQR---PRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCC---CCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            67899999999865   234567888999999999999 99999999988877432        367899999988733 


Q ss_pred             -CCcceEEEEEEcccc---ccC--Ceeeeeeecccc------ccceeEEEEEEEEecCC-----C--------CCCC---
Q 004872          451 -GDENMGSARVNLEGL---VEG--SVRDIWVPLEKV------NTGELRLQIEATRVDDN-----E--------GSRG---  502 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l---~~~--~~~~~w~~L~~~------~~G~I~l~~~~~~~~~~-----~--------~~~~---  502 (726)
                       ..+.||.+.++|+..   ..+  .....||+|-+.      .+-+|.+.+....-...     .        ...+   
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~  158 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP  158 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence             778999999999998   544  356799999875      24677777765532210     0        0000   


Q ss_pred             --------------------------CCCCCCceEEEEEEEEeecCcccc------cCCCCccEEEEEECCeEEEeEeee
Q 004872          503 --------------------------QNIGSGNGWIELVIVEARDLVAAD------LRGTSDPYVKVQYGDLKKRTKVIF  550 (726)
Q Consensus       503 --------------------------~~~~~~~g~L~v~v~~a~~L~~~d------~~g~~DPyv~v~~~~~~~kT~v~~  550 (726)
                                                .........|.|++..|.||...-      ..+...-|...++-+....|....
T Consensus       159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~  238 (340)
T PF12416_consen  159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK  238 (340)
T ss_pred             ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc
Confidence                                      011233567889999999986541      123456677777877788888888


Q ss_pred             CCCCCeee-eEEE-Eec------------CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCC
Q 004872          551 KTLNPQWH-QTLE-FPD------------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN  599 (726)
Q Consensus       551 ~t~nP~wn-e~~~-f~v------------~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~  599 (726)
                      ...+|.|. |+-. |.+            ....|.|.++..     +..||.+.|++..+...
T Consensus       239 ~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----~~~Lg~~~v~l~~Ll~~  296 (340)
T PF12416_consen  239 SLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----NQSLGSTSVPLQPLLPK  296 (340)
T ss_pred             ccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----CcEEEEEEEEhhhccCC
Confidence            88888775 3333 554            246788888764     55899999999988644

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=1.5e-05  Score=82.41  Aligned_cols=104  Identities=32%  Similarity=0.395  Sum_probs=88.0

Q ss_pred             CCceEEEEEEEEeecCccccc-CCCCccEEEEEECC-----eEEEeEeeeCCCCCeeeeEEEEec--CCCeEEEEEE-EC
Q 004872          507 SGNGWIELVIVEARDLVAADL-RGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEFPD--DGSPLTLHVR-DH  577 (726)
Q Consensus       507 ~~~g~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~wne~~~f~v--~~~~l~i~V~-d~  577 (726)
                      ...|.+.|.|++|++|..+.. ...++|||+|++.+     .+.+|+...+|++|.|.+...|.-  ....|.+.|| |+
T Consensus       266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdy  345 (405)
T KOG2060|consen  266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDY  345 (405)
T ss_pred             cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccc
Confidence            457999999999999976543 33789999999943     367999999999999999998885  4788999999 77


Q ss_pred             CCCCCCCeeEEEEEEccccCCCC-ceeeEEecCC
Q 004872          578 NALLASSSIGDCVVEYQRLPPNQ-MADKWIPLQG  610 (726)
Q Consensus       578 d~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~  610 (726)
                      .+..++.|+|.+.+-+.++.... ....||+|-+
T Consensus       346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             cccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence            78888899999999999997765 7889999976

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.79  E-value=2.6e-05  Score=69.00  Aligned_cols=97  Identities=20%  Similarity=0.328  Sum_probs=73.9

Q ss_pred             EEEEEEEeecCCCCC-------C------CCCCCcEEEEEE----CCeEeecccc-CCCCCceeeEEEEEee--------
Q 004872          381 INVTVVEGKDLMPKD-------K------SGKCDPYVKLQY----GKIVQRTRTA-HSPNHVWNQKFELDEI--------  434 (726)
Q Consensus       381 L~V~V~~a~~L~~~d-------~------~g~~dpyv~v~l----g~~~~kT~~~-~t~nP~wne~f~f~v~--------  434 (726)
                      |.|.|++|.+|....       .      .-..|+||++.+    +++..+|+++ ++-.|.|+..++|.+.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            357788887774321       0      124689999986    5778999999 9999999999999965        


Q ss_pred             C--------CceeEEEEEEeecCC-----------CCcceEEEEEEccccccCC-eeeeeeec
Q 004872          435 G--------GGECLMVKCYNEEIF-----------GDENMGSARVNLEGLVEGS-VRDIWVPL  477 (726)
Q Consensus       435 ~--------~~~~l~i~V~d~~~~-----------~d~~iG~~~i~L~~l~~~~-~~~~w~~L  477 (726)
                      .        ....+.++||+....           +|-++|.+.||+.+|+... ....||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1        134789999997543           4568999999999998654 67899975

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02964 phosphatidylserine decarboxylase

Probab=97.78  E-value=3.2e-05  Score=88.15  Aligned_cols=86  Identities=15%  Similarity=0.330  Sum_probs=70.8

Q ss_pred             cccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcE-EEEEEc-cEEeeeecCCCCCCcccceeEEE
Q 004872          184 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTF-VEIELE-ELTRRTDARPGSDPRWDSMFNMV  261 (726)
Q Consensus       184 ~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPy-V~v~~g-~~~rTt~i~~t~nP~WnEtf~~~  261 (726)
                      ..|++.++|++|+    ++..                         ||| +.+++| +..||.+.++|.||+|||...|+
T Consensus        52 ~~~~~~~~~~~~~----~~~~-------------------------~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~  102 (644)
T PLN02964         52 FSGIALLTLVGAE----MKFK-------------------------DKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLL  102 (644)
T ss_pred             ccCeEEEEeehhh----hccC-------------------------CcEEEEEEecceeeeeccccccCCcccchhhceE
Confidence            4599999999998    3331                         554 556667 57899999999999999999999


Q ss_pred             EecC-CceEEEEEEEeCCCCCCcceeEEEEEeceeccCC
Q 004872          262 LHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADD  299 (726)
Q Consensus       262 v~~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~  299 (726)
                      |... ....+|.|||++.. .+++++|.|+++|.++...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~-s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        103 LEKNGPHLARISVFETNRL-SKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             eccCCcceEEEEEEecCCC-CHHHhhhheeecHhhccHH
Confidence            8765 44579999999997 8999999999999776643

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.50  E-value=0.00011  Score=60.38  Aligned_cols=91  Identities=14%  Similarity=0.306  Sum_probs=67.9

Q ss_pred             EEEEEeecCccccc-CCCCccEEEEEE--C-CeEEEeEeeeCCCCCeeeeEEEEec-----CCCeEEEEEEECCCCCCCC
Q 004872          514 LVIVEARDLVAADL-RGTSDPYVKVQY--G-DLKKRTKVIFKTLNPQWHQTLEFPD-----DGSPLTLHVRDHNALLASS  584 (726)
Q Consensus       514 v~v~~a~~L~~~d~-~g~~DPyv~v~~--~-~~~~kT~v~~~t~nP~wne~~~f~v-----~~~~l~i~V~d~d~~~~d~  584 (726)
                      +++++++||.-... ...+.-|++-.+  . ....||.+.+...||+|+|+|.|.+     ..-.|.+.|+.  ...+.+
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe   80 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR   80 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence            68889999864332 334455666444  2 2467999999999999999999997     36788999998  456788


Q ss_pred             eeEEEEEEccccCCCCceeeEEe
Q 004872          585 SIGDCVVEYQRLPPNQMADKWIP  607 (726)
Q Consensus       585 ~lG~~~i~l~~l~~~~~~~~w~~  607 (726)
                      .||.|.+.++.+.++ +...|.+
T Consensus        81 ~iG~~sL~l~s~gee-E~~HW~e  102 (103)
T cd08684          81 TIGECSLSLRTLSTQ-ETDHWLE  102 (103)
T ss_pred             eeeEEEeecccCCHH-Hhhhhhc
Confidence            999999999988654 3456654

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.32  E-value=0.0002  Score=58.93  Aligned_cols=93  Identities=17%  Similarity=0.160  Sum_probs=68.0

Q ss_pred             EEEEEEeecCCCCC-CCCCCCcEEEEEE--C-CeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCCCCc
Q 004872          382 NVTVVEGKDLMPKD-KSGKCDPYVKLQY--G-KIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIFGDE  453 (726)
Q Consensus       382 ~V~V~~a~~L~~~d-~~g~~dpyv~v~l--g-~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~~d~  453 (726)
                      .+++.+|+||.-.. ....+.-|++=.+  . ...+||... +..||+|.|+|.|.+..   ++-.|.|+|+..-+ +.+
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RKe   80 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RKR   80 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-ccc
Confidence            58899999995322 2334556776444  3 457899999 99999999999999765   36688999998322 788


Q ss_pred             ceEEEEEEccccccCCeeeeeee
Q 004872          454 NMGSARVNLEGLVEGSVRDIWVP  476 (726)
Q Consensus       454 ~iG~~~i~L~~l~~~~~~~~w~~  476 (726)
                      .||.+.+.++++-.. +..+|..
T Consensus        81 ~iG~~sL~l~s~gee-E~~HW~e  102 (103)
T cd08684          81 TIGECSLSLRTLSTQ-ETDHWLE  102 (103)
T ss_pred             eeeEEEeecccCCHH-Hhhhhhc
Confidence            999999999987432 3345643

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.17  E-value=0.00034  Score=73.17  Aligned_cols=117  Identities=16%  Similarity=0.241  Sum_probs=95.0

Q ss_pred             ceEEEEEEEEeecCcccccCCCCccEEEEEE---C--CeEEEeEeeeCCCCCeeeeEEEEecC--------------CCe
Q 004872          509 NGWIELVIVEARDLVAADLRGTSDPYVKVQY---G--DLKKRTKVIFKTLNPQWHQTLEFPDD--------------GSP  569 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~---~--~~~~kT~v~~~t~nP~wne~~~f~v~--------------~~~  569 (726)
                      ...|.+.|.++.+++........|-|+++.+   +  .++.+|.+++.|.+|.|+|.|.+.+.              ...
T Consensus       366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g  445 (523)
T KOG3837|consen  366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG  445 (523)
T ss_pred             hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence            4567888899998886654556688999987   2  35779999999999999999999873              357


Q ss_pred             EEEEEEECCCC-CCCCeeEEEEEEccccCCCCceeeEEecCC---CCCeEEEEEEEEEec
Q 004872          570 LTLHVRDHNAL-LASSSIGDCVVEYQRLPPNQMADKWIPLQG---VRKGEIHVLITRKVP  625 (726)
Q Consensus       570 l~i~V~d~d~~-~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~---~~~G~i~l~l~~~~p  625 (726)
                      +.|++|++..| ..|.++|.+.+.|..|.........++|.+   ..+|.|.+++.++-|
T Consensus       446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~P  505 (523)
T KOG3837|consen  446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQP  505 (523)
T ss_pred             eeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEecc
Confidence            99999998875 568899999999999988878888899864   246999999988544

>PLN02964 phosphatidylserine decarboxylase

Probab=97.08  E-value=0.00062  Score=77.91  Aligned_cols=88  Identities=19%  Similarity=0.281  Sum_probs=73.0

Q ss_pred             CCceEEEEEEEEeecCcccccCCCCccEEE-EEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCC
Q 004872          507 SGNGWIELVIVEARDLVAADLRGTSDPYVK-VQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLA  582 (726)
Q Consensus       507 ~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~-v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~  582 (726)
                      .-.|...+++.+|+    ++   ..|||.. +++|.+.+||.+.++|+||+||+...|.+.   ....++.|||.+.+++
T Consensus        51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  123 (644)
T PLN02964         51 DFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSK  123 (644)
T ss_pred             cccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCH
Confidence            45688999999997    32   3589776 556889999999999999999998888873   3446999999999999


Q ss_pred             CCeeEEEEEEccccCCCCc
Q 004872          583 SSSIGDCVVEYQRLPPNQM  601 (726)
Q Consensus       583 d~~lG~~~i~l~~l~~~~~  601 (726)
                      ++.+|.|.++|..+...+.
T Consensus       124 n~lv~~~e~~~t~f~~kqi  142 (644)
T PLN02964        124 NTLVGYCELDLFDFVTQEP  142 (644)
T ss_pred             HHhhhheeecHhhccHHHH
Confidence            9999999999988765543

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.06  E-value=0.0057  Score=64.92  Aligned_cols=108  Identities=21%  Similarity=0.308  Sum_probs=91.0

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC----------CCeEEEEEEECC-CC
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD----------GSPLTLHVRDHN-AL  580 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~----------~~~l~i~V~d~d-~~  580 (726)
                      +.|.|.+|++++..   ..-.-.+...+++....|..+..+-.|.||..+.+.++          +..|++++|..| .-
T Consensus         2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQR---PRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCC---CCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            67899999999876   23456788889999999999999999999999999873          678999999988 55


Q ss_pred             CCCCeeEEEEEEcccc---CCC--CceeeEEecCCC------CCeEEEEEEEE
Q 004872          581 LASSSIGDCVVEYQRL---PPN--QMADKWIPLQGV------RKGEIHVLITR  622 (726)
Q Consensus       581 ~~d~~lG~~~i~l~~l---~~~--~~~~~w~~L~~~------~~G~i~l~l~~  622 (726)
                      +..+.+|.+.++|...   ..+  ....+||+|-+.      .+-||++.+.+
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~i  131 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSI  131 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEE
Confidence            7788999999999988   554  567899999764      35789888887

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.02  E-value=0.00041  Score=72.08  Aligned_cols=103  Identities=21%  Similarity=0.314  Sum_probs=84.2

Q ss_pred             ccEEEEEEEEeecCCCCCCC-CCCCcEEEEEE--CC---eEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEee-cC
Q 004872          378 GRKINVTVVEGKDLMPKDKS-GKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNE-EI  449 (726)
Q Consensus       378 ~~~L~V~V~~a~~L~~~d~~-g~~dpyv~v~l--g~---~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~-~~  449 (726)
                      .|.+.|.|++|++|..+... ..++|||+||+  ++   .+.+|+.. +|.+|-|-+...|....+...|.+.||-. .+
T Consensus       268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygR  347 (405)
T KOG2060|consen  268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGR  347 (405)
T ss_pred             cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccc
Confidence            35899999999999765433 37899999999  22   26788888 99999998888888667789999999954 44


Q ss_pred             C-CCcceEEEEEEccccccCC-eeeeeeecccc
Q 004872          450 F-GDENMGSARVNLEGLVEGS-VRDIWVPLEKV  480 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~~~~-~~~~w~~L~~~  480 (726)
                      . .+.|+|.+.+-+.++.... ....||+|.+.
T Consensus       348 md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs  380 (405)
T KOG2060|consen  348 MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS  380 (405)
T ss_pred             cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence            4 7889999999999997666 67899999874

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=96.90  E-value=0.00069  Score=70.95  Aligned_cols=113  Identities=18%  Similarity=0.316  Sum_probs=90.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE---C--CeEeecccc-CCCCCceeeEEEEEeeCC------------ceeEE
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---G--KIVQRTRTA-HSPNHVWNQKFELDEIGG------------GECLM  441 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g--~~~~kT~~~-~t~nP~wne~f~f~v~~~------------~~~l~  441 (726)
                      .|.+.|.++.+++.-......|.|+++.+   +  .+..+|.++ .+.+|.|+|.|.+.+...            +..+.
T Consensus       368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k  447 (523)
T KOG3837|consen  368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK  447 (523)
T ss_pred             HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence            57888888988876543445688999888   3  346777778 999999999999997652            23689


Q ss_pred             EEEEeecCC--CCcceEEEEEEccccccCCeeeeeeeccccc---cceeEEEEEEE
Q 004872          442 VKCYNEEIF--GDENMGSARVNLEGLVEGSVRDIWVPLEKVN---TGELRLQIEAT  492 (726)
Q Consensus       442 i~V~d~~~~--~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~---~G~I~l~~~~~  492 (726)
                      |++|++..+  +|.++|.+.+.|..|.........++|.+..   .|.+.+.+...
T Consensus       448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             EEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence            999999888  8999999999999998777777889998642   58888888765

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.05  E-value=0.075  Score=49.69  Aligned_cols=119  Identities=12%  Similarity=0.262  Sum_probs=85.6

Q ss_pred             CCceEEEEEEEEeecCccccc--CCCCccEEEEE--ECCeEEEeEeeeCCCCCeeeeEEEEecC----------------
Q 004872          507 SGNGWIELVIVEARDLVAADL--RGTSDPYVKVQ--YGDLKKRTKVIFKTLNPQWHQTLEFPDD----------------  566 (726)
Q Consensus       507 ~~~g~L~v~v~~a~~L~~~d~--~g~~DPyv~v~--~~~~~~kT~v~~~t~nP~wne~~~f~v~----------------  566 (726)
                      +....|.+.|..++-+..--.  .+..+.-+.+.  +++++++|+.+.-+.+|.|+|.|.|+++                
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~   85 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI   85 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence            566788999999886542211  14455555544  5899999999999999999999999973                


Q ss_pred             CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCce--eeEEecCC------CCCeEEEEEEEEEecC
Q 004872          567 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMA--DKWIPLQG------VRKGEIHVLITRKVPE  626 (726)
Q Consensus       567 ~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~--~~w~~L~~------~~~G~i~l~l~~~~p~  626 (726)
                      .+.+++-|.-.|..+...++|.-.++-..+......  ..-..|.|      ...|-|.+++++ +|.
T Consensus        86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lEL-lP~  152 (156)
T PF15627_consen   86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLEL-LPN  152 (156)
T ss_pred             CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEe-ecC
Confidence            356888898888777678999998887776543332  23344443      245999999998 654

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.69  E-value=0.038  Score=63.41  Aligned_cols=109  Identities=17%  Similarity=0.280  Sum_probs=79.6

Q ss_pred             CCceEEEEEEEEeecCcccccCCCCccEEEEEECC-------eEEEeEeee-CCCCCeeee-EEEEec----CCCeEEEE
Q 004872          507 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-------LKKRTKVIF-KTLNPQWHQ-TLEFPD----DGSPLTLH  573 (726)
Q Consensus       507 ~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~v~~-~t~nP~wne-~~~f~v----~~~~l~i~  573 (726)
                      --.+.+.|+|+.|+-|..++    ...||.|.+-+       ..++|+++. +++||+|+| .|.|.-    .-..|+|.
T Consensus       700 vIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia  775 (1189)
T KOG1265|consen  700 VIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA  775 (1189)
T ss_pred             eEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence            34578999999999997664    45899999843       356888876 489999996 788872    35789999


Q ss_pred             EEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC-----CeEEEEEEEE--EecC
Q 004872          574 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR--KVPE  626 (726)
Q Consensus       574 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~--~~p~  626 (726)
                      ||+..    ..+||+-.+|++.+..|.   +.+.|....     --.|.+.+.+  |+|.
T Consensus       776 vyeEg----gK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl~lp~Lfv~i~~kdyvpd  828 (1189)
T KOG1265|consen  776 VYEEG----GKFIGQRILPVDGLNAGY---RHVCLRSESNQPLTLPALFVYIVLKDYVPD  828 (1189)
T ss_pred             eeccC----CceeeeeccchhcccCcc---eeEEecCCCCCccccceeEEEEEeeccCCc
Confidence            99865    459999999999998876   345554321     1345555444  5664

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.33  E-value=0.11  Score=49.12  Aligned_cols=84  Identities=10%  Similarity=0.178  Sum_probs=57.2

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE--ccE-----EeeeecCCCCCCccccee
Q 004872          186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL-----TRRTDARPGSDPRWDSMF  258 (726)
Q Consensus       186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~--g~~-----~rTt~i~~t~nP~WnEtf  258 (726)
                      .-++|+|++|+++.-.+.                         .|=||++.+  |..     ..|+.+. ..++.|||..
T Consensus         8 ~~~~v~i~~~~~~~~~~~-------------------------~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL   61 (158)
T cd08398           8 SNLRIKILCATYVNVNDI-------------------------DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWL   61 (158)
T ss_pred             CCeEEEEEeeccCCCCCc-------------------------CeEEEEEEEEECCEEccCeeEecccC-CCCCccceeE
Confidence            457899999999875431                         166888877  432     1233333 4789999998


Q ss_pred             EEEE--ecC--CceEEEEEEEeCCCCC-C--cceeEEEEEecee
Q 004872          259 NMVL--HEE--TGTVRFNLYECIPGHV-K--YDYLTSCEVKMKY  295 (726)
Q Consensus       259 ~~~v--~~~--~~~L~~~V~D~d~~~~-~--dd~lG~~~i~L~~  295 (726)
                      .|.+  .+.  ...|.|.||+...... +  ...+|.+.++|=+
T Consensus        62 ~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          62 DYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             EcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence            8874  444  6799999999874211 1  2469999988844

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=95.08  E-value=0.2  Score=46.85  Aligned_cols=92  Identities=12%  Similarity=0.149  Sum_probs=67.0

Q ss_pred             cEEEEEEEEeecCCCCC--CCCCCCcEEEEEE--CCeEeecccc-CCCCCceeeEEEEEeeCC--------------cee
Q 004872          379 RKINVTVVEGKDLMPKD--KSGKCDPYVKLQY--GKIVQRTRTA-HSPNHVWNQKFELDEIGG--------------GEC  439 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d--~~g~~dpyv~v~l--g~~~~kT~~~-~t~nP~wne~f~f~v~~~--------------~~~  439 (726)
                      ..|.+.|..++-...--  ..+..+.-..+++  +++.++|+.+ .+.+|.|+|.|.|.+...              .+.
T Consensus         9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p   88 (156)
T PF15627_consen    9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP   88 (156)
T ss_pred             eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence            37999999988653211  1145555555555  8999999999 999999999999996543              246


Q ss_pred             EEEEEEeecCC-CCcceEEEEEEccccccCCe
Q 004872          440 LMVKCYNEEIF-GDENMGSARVNLEGLVEGSV  470 (726)
Q Consensus       440 l~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~~  470 (726)
                      +++.|...+.. ...++|+-.++.+.+...+.
T Consensus        89 ihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~  120 (156)
T PF15627_consen   89 IHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN  120 (156)
T ss_pred             eEEEEEEecCCCceEeeeeceehHHHHhccCC
Confidence            78888777765 45788888888887765443

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.92  E-value=0.16  Score=48.95  Aligned_cols=85  Identities=16%  Similarity=0.161  Sum_probs=61.0

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEE--CCeE----EEeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEEC
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH  577 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~  577 (726)
                      ..++|+|..++++..  .....+-||++.+  |++.    ..|+.+.-+.++.|||.+.|++.      ...|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            478999999999986  2345677888755  5543    35555554567999999999873      67899999987


Q ss_pred             CCCC----------------CCCeeEEEEEEcccc
Q 004872          578 NALL----------------ASSSIGDCVVEYQRL  596 (726)
Q Consensus       578 d~~~----------------~d~~lG~~~i~l~~l  596 (726)
                      ....                .+..||.+.++|-+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            6422                245788888887654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.91  E-value=0.16  Score=49.05  Aligned_cols=86  Identities=12%  Similarity=0.174  Sum_probs=56.7

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE--ccE-----EeeeecCCCCCCccccee
Q 004872          186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL-----TRRTDARPGSDPRWDSMF  258 (726)
Q Consensus       186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~--g~~-----~rTt~i~~t~nP~WnEtf  258 (726)
                      --++|+|++|.+|.-.+..                        .+=||++.+  |..     ..|+.+.-..++.|||.+
T Consensus         8 ~~f~i~i~~~~~~~~~~~~------------------------~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl   63 (173)
T cd08693           8 EKFSITLHKISNLNAAERT------------------------MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETL   63 (173)
T ss_pred             CCEEEEEEEeccCccCCCC------------------------ceEEEEEEEEECCEEccCceEccccCCCCccccceeE
Confidence            3578999999999862211                        145777766  421     233333445679999998


Q ss_pred             EEEE--ecC--CceEEEEEEEeCCCC---------------CCcceeEEEEEecee
Q 004872          259 NMVL--HEE--TGTVRFNLYECIPGH---------------VKYDYLTSCEVKMKY  295 (726)
Q Consensus       259 ~~~v--~~~--~~~L~~~V~D~d~~~---------------~~dd~lG~~~i~L~~  295 (726)
                      .|.+  .+.  +..|.|.||+.....               .++..||.+.++|=+
T Consensus        64 ~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          64 EFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             EcccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence            8874  454  679999999976421               123588888888743

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=94.39  E-value=0.061  Score=61.83  Aligned_cols=91  Identities=27%  Similarity=0.413  Sum_probs=70.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-C------CeEeecccc--CCCCCceeeE-EEEE--eeCCceeEEEEEEe
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-G------KIVQRTRTA--HSPNHVWNQK-FELD--EIGGGECLMVKCYN  446 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-g------~~~~kT~~~--~t~nP~wne~-f~f~--v~~~~~~l~i~V~d  446 (726)
                      +.+.|+|+.+.-|..++    ...||.|.+ |      ...+||++.  ++.||+|+|. |.|.  +.+.-..|+|.||+
T Consensus       703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye  778 (1189)
T KOG1265|consen  703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE  778 (1189)
T ss_pred             eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence            47999999999997654    348999998 3      347899998  8999999864 6666  22346689999999


Q ss_pred             ecCCCCcceEEEEEEccccccCCeeeeeeeccc
Q 004872          447 EEIFGDENMGSARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       447 ~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                      ..   ..+||+-.+++..+..+-   +.+.|..
T Consensus       779 Eg---gK~ig~RIlpvd~l~~GY---rhv~LRs  805 (1189)
T KOG1265|consen  779 EG---GKFIGQRILPVDGLNAGY---RHVCLRS  805 (1189)
T ss_pred             cC---CceeeeeccchhcccCcc---eeEEecC
Confidence            85   679999999999986553   3445543

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.39  E-value=0.27  Score=46.62  Aligned_cols=84  Identities=14%  Similarity=0.166  Sum_probs=61.0

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEE--CCeEE----EeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEEC
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLKK----RTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH  577 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~  577 (726)
                      ..++|.|+.|+++...   ..+|-||++.+  |++..    .|+.+.- .++.|||-+.|++.      +..|.|+||+.
T Consensus         8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            4688999999998764   34688999866  55432    4443433 67999999999873      67899999987


Q ss_pred             CCCC----CCCeeEEEEEEccccC
Q 004872          578 NALL----ASSSIGDCVVEYQRLP  597 (726)
Q Consensus       578 d~~~----~d~~lG~~~i~l~~l~  597 (726)
                      ..-.    ....+|.+.++|-+-.
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~~  107 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDYT  107 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECCC
Confidence            6421    1246999999987643

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=94.36  E-value=1.1  Score=41.57  Aligned_cols=112  Identities=18%  Similarity=0.279  Sum_probs=78.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---Eeecccc--CCCCCceeeEEEEEeeC---------CceeEEEEEE
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI---VQRTRTA--HSPNHVWNQKFELDEIG---------GGECLMVKCY  445 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~---~~kT~~~--~t~nP~wne~f~f~v~~---------~~~~l~i~V~  445 (726)
                      .+.++|++..+++.    .....||+...++.   ..+|...  .+..-.|++.|.+.+.-         ....+.|.|+
T Consensus         8 ~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~   83 (143)
T PF10358_consen    8 QFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF   83 (143)
T ss_pred             EEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence            68899999998876    22334555555544   3566665  66678999999887532         1347888998


Q ss_pred             eecCCCC-cceEEEEEEccccccC--Ceeeeeeecccc--ccceeEEEEEEEEec
Q 004872          446 NEEIFGD-ENMGSARVNLEGLVEG--SVRDIWVPLEKV--NTGELRLQIEATRVD  495 (726)
Q Consensus       446 d~~~~~d-~~iG~~~i~L~~l~~~--~~~~~w~~L~~~--~~G~I~l~~~~~~~~  495 (726)
                      .....+. ..+|.+.++|.++...  .....-++|...  ....+.+++....+.
T Consensus        84 ~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~  138 (143)
T PF10358_consen   84 EVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELR  138 (143)
T ss_pred             EecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECc
Confidence            8754323 5999999999999874  355677788765  357788888777654

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.91  E-value=0.3  Score=46.24  Aligned_cols=87  Identities=17%  Similarity=0.108  Sum_probs=60.5

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEE--CCeE----EEeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEEC
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDH  577 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~  577 (726)
                      ..++|.+....++... .....+-||++.+  |++.    ..|.......++.|||.+.|++.      +..|.|+||+.
T Consensus         8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            4567778888777651 1234677777765  5542    23333333468999999999962      67899999998


Q ss_pred             CCCC--CCCeeEEEEEEccccC
Q 004872          578 NALL--ASSSIGDCVVEYQRLP  597 (726)
Q Consensus       578 d~~~--~d~~lG~~~i~l~~l~  597 (726)
                      +..+  .+..||.+.++|-+-.
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~~  108 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDYK  108 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEccc
Confidence            7654  4679999999988653

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.87  E-value=0.33  Score=46.04  Aligned_cols=87  Identities=11%  Similarity=0.172  Sum_probs=57.2

Q ss_pred             cEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE--ccE----EeeeecCC-CCCCccccee
Q 004872          186 GIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL----TRRTDARP-GSDPRWDSMF  258 (726)
Q Consensus       186 GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~--g~~----~rTt~i~~-t~nP~WnEtf  258 (726)
                      .-++|+|+.+.++...+. ..                      .+=||++.+  |..    .+++.... ..++.|||..
T Consensus         8 ~~~~i~i~~~~~~~~~~~-~~----------------------~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l   64 (156)
T cd08380           8 FNLRIKIHGITNINLLDS-ED----------------------LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWL   64 (156)
T ss_pred             CCeEEEEEeeccccccCC-Cc----------------------eeEEEEEEEEECCEEccCceeccCCcCCCCCccccee
Confidence            346788888888765110 00                      145777766  432    12333333 3789999998


Q ss_pred             EEEE--ecC--CceEEEEEEEeCCCC-CCcceeEEEEEecee
Q 004872          259 NMVL--HEE--TGTVRFNLYECIPGH-VKYDYLTSCEVKMKY  295 (726)
Q Consensus       259 ~~~v--~~~--~~~L~~~V~D~d~~~-~~dd~lG~~~i~L~~  295 (726)
                      .|.+  .+.  +..|.|.||+.+... .++..||.+.++|=+
T Consensus        65 ~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd  106 (156)
T cd08380          65 TFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD  106 (156)
T ss_pred             EccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence            8874  444  679999999988641 145799999999843

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=93.81  E-value=1.9  Score=39.89  Aligned_cols=111  Identities=17%  Similarity=0.226  Sum_probs=76.2

Q ss_pred             CceEEEEEEEEeecCcccccCCCCccEEEEEECCeE---EEeEeee-CCCCCeeeeEEEEec-----------CCCeEEE
Q 004872          508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK---KRTKVIF-KTLNPQWHQTLEFPD-----------DGSPLTL  572 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~v~~-~t~nP~wne~~~f~v-----------~~~~l~i  572 (726)
                      ....+.+.|.+..+++.    ...--||+...++..   .+|.... .+-.-.|||.|.+++           ....+.|
T Consensus         5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence            34677889999998886    233445555555543   3444333 355689999999986           1346899


Q ss_pred             EEEECCCCCCCCeeEEEEEEccccCCC--CceeeEEecCCC--CCeEEEEEEEE
Q 004872          573 HVRDHNALLASSSIGDCVVEYQRLPPN--QMADKWIPLQGV--RKGEIHVLITR  622 (726)
Q Consensus       573 ~V~d~d~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~--~~G~i~l~l~~  622 (726)
                      .|+....-++...+|.+.++|.+....  .....-++|.+.  ....|++++.+
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~  134 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISL  134 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEE
Confidence            999875433336899999999999763  456677888764  34678888877

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.67  E-value=0.28  Score=47.27  Aligned_cols=88  Identities=16%  Similarity=0.209  Sum_probs=64.5

Q ss_pred             ceEEEEEEEEeecCcccccCCCCccEEEEEE--CCeE----EEeEeee--C--CCCCeeeeEEEEecC------CCeEEE
Q 004872          509 NGWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIF--K--TLNPQWHQTLEFPDD------GSPLTL  572 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~--~--t~nP~wne~~~f~v~------~~~l~i  572 (726)
                      ...++|+|..+++++........|-||.+.+  |++.    ..|+...  +  ...+.|||-+.|++.      +..|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            3568899999999998766556888999866  5543    2444321  1  235789999999973      678999


Q ss_pred             EEEECCCCC---------CCCeeEEEEEEcccc
Q 004872          573 HVRDHNALL---------ASSSIGDCVVEYQRL  596 (726)
Q Consensus       573 ~V~d~d~~~---------~d~~lG~~~i~l~~l  596 (726)
                      ++|+....+         .+..||.+.++|-+-
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999877544         356899999988764

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.64  E-value=0.25  Score=46.96  Aligned_cols=83  Identities=17%  Similarity=0.191  Sum_probs=60.5

Q ss_pred             CCCccEEEEEE--CCeE----EEeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCCCCCCCeeEEEEEEcccc
Q 004872          529 GTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNALLASSSIGDCVVEYQRL  596 (726)
Q Consensus       529 g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l  596 (726)
                      ..+|-||++.+  +++.    ..|..+.-+..+.|||-+.|++.      +..|.|+|||.+..++...+|.+.++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            45788888876  4442    35555555667899999999973      678999999988666677999999998865


Q ss_pred             CCCCceeeEEecCCCCCeEEEEEEEE
Q 004872          597 PPNQMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       597 ~~~~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                      ..      ++     .+|...+.+..
T Consensus       108 ~g------~L-----r~G~~~l~lw~  122 (159)
T cd08397         108 DG------TL-----RRGRQKLRVWP  122 (159)
T ss_pred             CC------cE-----ecCCEEEEEEe
Confidence            31      11     35777777754

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.46  E-value=0.48  Score=45.02  Aligned_cols=64  Identities=6%  Similarity=0.154  Sum_probs=47.6

Q ss_pred             CcEEEEEE--ccE-----EeeeecCCCCCCcccceeEEEE--ecC--CceEEEEEEEeCCCCCCcceeEEEEEece
Q 004872          230 TTFVEIEL--EEL-----TRRTDARPGSDPRWDSMFNMVL--HEE--TGTVRFNLYECIPGHVKYDYLTSCEVKMK  294 (726)
Q Consensus       230 DPyV~v~~--g~~-----~rTt~i~~t~nP~WnEtf~~~v--~~~--~~~L~~~V~D~d~~~~~dd~lG~~~i~L~  294 (726)
                      |=||++.+  |..     .+|+.+.-+..+.|||...|.+  .+.  +..|.|.|||.+.. .+...+|.+.++|=
T Consensus        31 ~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~-~~~~~vg~~~~~lF  105 (159)
T cd08397          31 DLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT-GKAVPFGGTTLSLF  105 (159)
T ss_pred             CEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC-CCceEEEEEEEeeE
Confidence            67888877  322     2444455566789999988885  344  67999999999864 46679999999883

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.07  E-value=0.63  Score=44.86  Aligned_cols=88  Identities=10%  Similarity=0.093  Sum_probs=58.3

Q ss_pred             ccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE--ccE-----Eeeeec--C--CCCCCc
Q 004872          185 GGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EEL-----TRRTDA--R--PGSDPR  253 (726)
Q Consensus       185 ~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~--g~~-----~rTt~i--~--~t~nP~  253 (726)
                      ...+.|+|.++.+++.......                      .|=||++.+  |..     ..|+..  .  -...+.
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~----------------------~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~   64 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSF----------------------EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVV   64 (171)
T ss_pred             cccEEEEEEEeecCChHHhhcc----------------------ccEEEEEEEEECCEECcCceeccccccccCcccccc
Confidence            3568899999999987642111                      156888877  422     122221  1  123578


Q ss_pred             ccceeEEEE--ecC--CceEEEEEEEeCCCCC---------CcceeEEEEEecee
Q 004872          254 WDSMFNMVL--HEE--TGTVRFNLYECIPGHV---------KYDYLTSCEVKMKY  295 (726)
Q Consensus       254 WnEtf~~~v--~~~--~~~L~~~V~D~d~~~~---------~dd~lG~~~i~L~~  295 (726)
                      |||...|.+  .+.  +..|.|.||+.... .         .+..||.+.++|=+
T Consensus        65 Wnewl~F~i~i~~LPrearL~itl~~~~~~-~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          65 WDEWIEFPIPVCQLPRESRLVLTLYGTTSS-PDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             ccceEECccchhcCChhHEEEEEEEEEecC-CccccccccccceEEEEEeEeeEc
Confidence            999988875  343  67999999998754 2         34689999988843

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=91.77  E-value=0.34  Score=49.59  Aligned_cols=82  Identities=13%  Similarity=0.241  Sum_probs=58.6

Q ss_pred             ccccEEEEEEEeecCCCCCCC-CCCCcccccccCCCCccccccCCCCcCcEEEEEEccEEeeeecCCC--CCCcccceeE
Q 004872          183 AVGGIVYVRVISASKLSRSSL-RGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDARPG--SDPRWDSMFN  259 (726)
Q Consensus       183 ~~~GvL~V~v~~A~~L~~~~~-~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~~~rTt~i~~t--~nP~WnEtf~  259 (726)
                      ...|+|.+++..+|+|+-... .|.                     ..+-||+++..++.++++.-.+  ..=.|.|+|.
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kgl---------------------t~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~  106 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGL---------------------TVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFK  106 (442)
T ss_pred             cccceEEEEEecccccccChhccCc---------------------eeeeeeeeeecccCccccccccCCCCccchhhce
Confidence            356999999999999986542 121                     1377999999877665554444  4456999999


Q ss_pred             EEEecCCceEEEEEEEeCCCCCCcc--eeE
Q 004872          260 MVLHEETGTVRFNLYECIPGHVKYD--YLT  287 (726)
Q Consensus       260 ~~v~~~~~~L~~~V~D~d~~~~~dd--~lG  287 (726)
                      ..+.+ .+.+.+-||.|+.. .++.  ..|
T Consensus       107 ~Dvv~-~~vl~~lvySW~pq-~RHKLC~~g  134 (442)
T KOG1452|consen  107 HDVVN-IEVLHYLVYSWPPQ-RRHKLCHLG  134 (442)
T ss_pred             eeccc-ceeeeEEEeecCch-hhccccccc
Confidence            87643 46789999999976 4454  355

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=90.77  E-value=1.6  Score=42.19  Aligned_cols=68  Identities=19%  Similarity=0.191  Sum_probs=44.2

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEE--CCeE---EEeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECC
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLK---KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHN  578 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~---~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~d  578 (726)
                      ..++|.|..+. .+..+......-||++.+  |++.   .+|....-+.+|.|||-+.|++.      ...|.|+||+..
T Consensus        10 ~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          10 RKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            35677777776 333332323345666544  4432   25655555678999999999973      678999999874

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=90.57  E-value=2.1  Score=36.09  Aligned_cols=82  Identities=11%  Similarity=0.041  Sum_probs=56.7

Q ss_pred             CccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEec
Q 004872          531 SDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL  608 (726)
Q Consensus       531 ~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L  608 (726)
                      ++-.+.+.+.+. ..+|.-.. ..+..|++.|.+..+ +..|+|+||-+|.   ...-|-..+.|.+...    ..-++|
T Consensus         9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdRsRELEI~VywrD~---RslCav~~lrLEd~~~----~~~~~l   80 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELERSRELEIAVYWRDW---RSLCAVKFLKLEDERH----EVQLDM   80 (98)
T ss_pred             cceEEEEEEcCeEEeeccccc-cccccccceeEEEeecccEEEEEEEEecc---hhhhhheeeEhhhhcc----cceecc
Confidence            567777888764 44554433 357899999999986 6899999998875   2355666777777322    233334


Q ss_pred             CCCCCeEEEEEEEE
Q 004872          609 QGVRKGEIHVLITR  622 (726)
Q Consensus       609 ~~~~~G~i~l~l~~  622 (726)
                        .+.|.+...++|
T Consensus        81 --epqg~l~~ev~f   92 (98)
T cd08687          81 --EPQLCLVAELTF   92 (98)
T ss_pred             --ccccEEEEEEEe
Confidence              357888888877

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=90.34  E-value=2.5  Score=41.12  Aligned_cols=55  Identities=15%  Similarity=0.255  Sum_probs=41.9

Q ss_pred             EEeeeecCCCCCCcccceeEEEEecC---CceEEEEEEEeCCCCCCc-ceeEEEEEece
Q 004872          240 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY-DYLTSCEVKMK  294 (726)
Q Consensus       240 ~~rTt~i~~t~nP~WnEtf~~~v~~~---~~~L~~~V~D~d~~~~~d-d~lG~~~i~L~  294 (726)
                      ..+|.+...+.+|.|+|++-+.+...   ...|.|.+++......++ ..+|.+.+||-
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            46788889999999999999987543   558999998865431122 57999998883

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=90.01  E-value=2.5  Score=35.67  Aligned_cols=83  Identities=17%  Similarity=0.242  Sum_probs=59.3

Q ss_pred             CCcEEEEEEC-CeEeeccccCCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcceEEEEEEccccccCCeeeeeeecc
Q 004872          400 CDPYVKLQYG-KIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLE  478 (726)
Q Consensus       400 ~dpyv~v~lg-~~~~kT~~~~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~  478 (726)
                      .+..|.+.++ +.+.+|.-....+..|++.|.+. .+....|+|.||=+|.  ..+-|...+.|++...    ..-.+|.
T Consensus         9 ~eV~avLklDn~~VgqT~Wk~~s~q~WDQ~Fti~-LdRsRELEI~VywrD~--RslCav~~lrLEd~~~----~~~~~le   81 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWKPKSNQAWDQSFTLE-LERSRELEIAVYWRDW--RSLCAVKFLKLEDERH----EVQLDME   81 (98)
T ss_pred             cceEEEEEEcCeEEeeccccccccccccceeEEE-eecccEEEEEEEEecc--hhhhhheeeEhhhhcc----cceeccc
Confidence            5678888885 46888887755789999999998 4556679999987764  4567778888888433    2334444


Q ss_pred             ccccceeEEEEEE
Q 004872          479 KVNTGELRLQIEA  491 (726)
Q Consensus       479 ~~~~G~I~l~~~~  491 (726)
                      +  +|.+...+.|
T Consensus        82 p--qg~l~~ev~f   92 (98)
T cd08687          82 P--QLCLVAELTF   92 (98)
T ss_pred             c--ccEEEEEEEe
Confidence            3  5777766655

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=89.30  E-value=0.65  Score=47.58  Aligned_cols=115  Identities=15%  Similarity=0.036  Sum_probs=80.1

Q ss_pred             CCceEEEEEEEEeecCcccc--cCCCCccEEEEEECCe-EEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCC
Q 004872          507 SGNGWIELVIVEARDLVAAD--LRGTSDPYVKVQYGDL-KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLA  582 (726)
Q Consensus       507 ~~~g~L~v~v~~a~~L~~~d--~~g~~DPyv~v~~~~~-~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~  582 (726)
                      ...|.|.++++.+++|.-..  .+-+.|-||.+....+ +.+|.+......-.|.|+|...+. ...+.+-||.|+.-.+
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~vl~~lvySW~pq~R  127 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIEVLHYLVYSWPPQRR  127 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccceeeeEEEeecCchhh
Confidence            45699999999999996443  3556799999999775 668888877778889999999875 6788999999887555


Q ss_pred             CCeeEEEEEEccccCCCCceeeEEecCCCCCeEEEEEEEE
Q 004872          583 SSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       583 d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                      +++--.-.+.+..+.. +..++-+.|.=.++|++.+.+-+
T Consensus       128 HKLC~~g~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~  166 (442)
T KOG1452|consen  128 HKLCHLGLLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPL  166 (442)
T ss_pred             ccccccchhhhhhhhh-cCCcceeeeecccCCCCceeccc
Confidence            5432222333333322 22334445555567877777766

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=89.29  E-value=2.8  Score=38.99  Aligned_cols=65  Identities=17%  Similarity=0.264  Sum_probs=46.1

Q ss_pred             EeEeeeCC-CCCeeeeEEEEec------CCCeEEEEEEECCCCCCC----CeeEEEEEEccccCCCCceeeEEecCCCCC
Q 004872          545 RTKVIFKT-LNPQWHQTLEFPD------DGSPLTLHVRDHNALLAS----SSIGDCVVEYQRLPPNQMADKWIPLQGVRK  613 (726)
Q Consensus       545 kT~v~~~t-~nP~wne~~~f~v------~~~~l~i~V~d~d~~~~d----~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~  613 (726)
                      .|....-+ .++.|||.+.|++      .+..|.|+||+.+.....    ..||.+.++|-+.... -          ..
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-L----------~~   91 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-L----------RQ   91 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-B----------EE
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-c----------cC
Confidence            56656655 7999999999996      267899999988775554    6999999998866321 0          24


Q ss_pred             eEEEEEE
Q 004872          614 GEIHVLI  620 (726)
Q Consensus       614 G~i~l~l  620 (726)
                      |...+.+
T Consensus        92 G~~~L~l   98 (142)
T PF00792_consen   92 GPQKLSL   98 (142)
T ss_dssp             EEEEEE-
T ss_pred             CCEEEEE
Confidence            7777777

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=88.46  E-value=2  Score=41.94  Aligned_cols=55  Identities=16%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             EEeeeecCCCCCCcccceeEEEEecC---CceEEEEEEEeCCCCCCc---ceeEEEEEece
Q 004872          240 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY---DYLTSCEVKMK  294 (726)
Q Consensus       240 ~~rTt~i~~t~nP~WnEtf~~~v~~~---~~~L~~~V~D~d~~~~~d---d~lG~~~i~L~  294 (726)
                      .++|.+...+.+|.|+|++-+.+...   ...|.|.+++......+|   ..+|.+.+||-
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            47888889999999999999887543   558999999875431233   47899988883

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=87.97  E-value=1.7  Score=40.34  Aligned_cols=63  Identities=19%  Similarity=0.255  Sum_probs=42.9

Q ss_pred             EEEEEE--cc-----EE-eeeecCCC-CCCcccceeEEEE--ecC--CceEEEEEEEeCCCCCCc----ceeEEEEEece
Q 004872          232 FVEIEL--EE-----LT-RRTDARPG-SDPRWDSMFNMVL--HEE--TGTVRFNLYECIPGHVKY----DYLTSCEVKMK  294 (726)
Q Consensus       232 yV~v~~--g~-----~~-rTt~i~~t-~nP~WnEtf~~~v--~~~--~~~L~~~V~D~d~~~~~d----d~lG~~~i~L~  294 (726)
                      ||++.+  |.     .. .|..+.-+ .+|.|||...|.+  .+.  +..|.|.||+.+.. ...    ..||.+.++|=
T Consensus         5 ~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~-~~~~~~~~~lgw~n~~lF   83 (142)
T PF00792_consen    5 YVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK-KKSKKKKVPLGWVNLPLF   83 (142)
T ss_dssp             EEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS-TTT--EEEEEEEEEEESB
T ss_pred             EEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC-CccccceeEEEEEEEEeE
Confidence            666666  42     12 34334444 7999999888885  344  67999999998865 333    69999999984


Q ss_pred             e
Q 004872          295 Y  295 (726)
Q Consensus       295 ~  295 (726)
                      +
T Consensus        84 d   84 (142)
T PF00792_consen   84 D   84 (142)
T ss_dssp             -
T ss_pred             C
Confidence            3

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=87.59  E-value=3.2  Score=40.07  Aligned_cols=101  Identities=20%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE---eecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeecC
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKIV---QRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEI  449 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g~~~---~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~  449 (726)
                      .++|+|+.+.++. .+......-||++.+  |++.   .+|... -+.++.|||...|.+.-    ....|.|.||+...
T Consensus        11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            5888888887442 222333456777655  6552   356666 66789999999888543    26789999998632


Q ss_pred             C-----------------CCcceEEEEEEccccccCCeeeeeeeccccccceeEEEEEEE
Q 004872          450 F-----------------GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT  492 (726)
Q Consensus       450 ~-----------------~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~~~~~  492 (726)
                      .                 .+..||.+.+.|-+...        .|   .+|+..+.+...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~--------~L---r~G~~~L~~W~~  138 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF--------LL---RTGEYVLHMWQI  138 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEcCCC--------ce---ecCCEEEEEecC
Confidence            1                 13456666666655321        11   257777777543

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=87.10  E-value=3  Score=36.68  Aligned_cols=90  Identities=19%  Similarity=0.242  Sum_probs=48.3

Q ss_pred             EEEEEECC-eEEEeEeeeCCCCCeeeeEEEEecC----------CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCC--
Q 004872          534 YVKVQYGD-LKKRTKVIFKTLNPQWHQTLEFPDD----------GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ--  600 (726)
Q Consensus       534 yv~v~~~~-~~~kT~v~~~t~nP~wne~~~f~v~----------~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~--  600 (726)
                      ||.+.+-. +...|.++. ..+|.+|-+..|.|.          ...+.|+++..-. ...+.+|.+.+++..+.+..  
T Consensus         2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~   79 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGE   79 (107)
T ss_dssp             EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S-
T ss_pred             EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCc
Confidence            45555544 556676666 789999998888873          5789999987653 33679999999999885332  


Q ss_pred             ceeeEEecC---CCCCeEEEEEEEEEec
Q 004872          601 MADKWIPLQ---GVRKGEIHVLITRKVP  625 (726)
Q Consensus       601 ~~~~w~~L~---~~~~G~i~l~l~~~~p  625 (726)
                      ....-..|.   +..-|.|.+.++++.|
T Consensus        80 ~i~~~~~l~g~~~~~~g~l~y~~rl~~P  107 (107)
T PF11618_consen   80 RIHGSATLVGVSGEDFGTLEYWIRLRVP  107 (107)
T ss_dssp             -EEEEEEE-BSSS-TSEEEEEEEEEEE-
T ss_pred             eEEEEEEEeccCCCeEEEEEEEEEecCC
Confidence            233444553   3445888888887554

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=86.03  E-value=1.8  Score=42.26  Aligned_cols=56  Identities=9%  Similarity=0.085  Sum_probs=35.0

Q ss_pred             EEeeeecCCCCCCcccceeEEEEecC---CceEEEEEEEeCCCCCCc--ceeEEEEEecee
Q 004872          240 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVKY--DYLTSCEVKMKY  295 (726)
Q Consensus       240 ~~rTt~i~~t~nP~WnEtf~~~v~~~---~~~L~~~V~D~d~~~~~d--d~lG~~~i~L~~  295 (726)
                      ...|.+..++.+|.|+|+|-+.+...   ...|.|.+|+......++  ..+|.+.+||-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            36777788899999999999988654   568999999987542233  699999999966

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=84.83  E-value=5  Score=34.81  Aligned_cols=68  Identities=21%  Similarity=0.241  Sum_probs=46.1

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEE--CCeE----EEeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCC
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQY--GDLK----KRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNA  579 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~d~  579 (726)
                      +.+.+..+++.........+|-||++.+  |++.    ..|+.+.-...+.|||-+.|++.      ...|.|++|+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            5566777776655433333588888866  5543    35554444556999999999873      5789999998653

Outlier of C2 family.

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=84.17  E-value=8.6  Score=37.44  Aligned_cols=52  Identities=21%  Similarity=0.205  Sum_probs=38.9

Q ss_pred             Eeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC--C-CcceEEEEEEcc
Q 004872          412 VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF--G-DENMGSARVNLE  463 (726)
Q Consensus       412 ~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~--~-d~~iG~~~i~L~  463 (726)
                      .++|.+. ++.+|.|+|++.+.+...   ...|.|++++....  + ...+|-+.++|-
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            6788888 999999999999987653   67888988875443  1 245676666663

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=83.57  E-value=7.7  Score=34.14  Aligned_cols=67  Identities=12%  Similarity=0.119  Sum_probs=37.2

Q ss_pred             EEEEEE-CCeEeeccccCCCCCceeeEEEEEeeCC--------ceeEEEEEEeecCCCCcceEEEEEEccccccCC
Q 004872          403 YVKLQY-GKIVQRTRTAHSPNHVWNQKFELDEIGG--------GECLMVKCYNEEIFGDENMGSARVNLEGLVEGS  469 (726)
Q Consensus       403 yv~v~l-g~~~~kT~~~~t~nP~wne~f~f~v~~~--------~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~~~~  469 (726)
                      ||.+.+ +-+.+.|.++.+.+|.+|-+-.|.+..+        ...+.++++.........+|.+.+++.++.++.
T Consensus         2 Fct~dFydfEtq~Tpvv~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~   77 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVRGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESN   77 (107)
T ss_dssp             EEEE-STT---EE---EESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--
T ss_pred             EEEEEeeceeeecccceeCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCC
Confidence            566666 4567777777888999999988887654        468999999877546679999999999998544

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=82.14  E-value=12  Score=36.51  Aligned_cols=52  Identities=12%  Similarity=0.059  Sum_probs=39.6

Q ss_pred             Eeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC--CC---cceEEEEEEcc
Q 004872          412 VQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF--GD---ENMGSARVNLE  463 (726)
Q Consensus       412 ~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~--~d---~~iG~~~i~L~  463 (726)
                      .++|.+. ++.+|.|+|++.+.+..   ....|.|.+++....  +|   ..+|-+.++|-
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            7888888 99999999999998765   377899999886533  22   45777666664

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=81.46  E-value=19  Score=35.01  Aligned_cols=56  Identities=7%  Similarity=0.023  Sum_probs=42.2

Q ss_pred             EEeeeecCCCCCCcccceeEEEEecC---CceEEEEEEEeCCCC-C-------CcceeEEEEEecee
Q 004872          240 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGH-V-------KYDYLTSCEVKMKY  295 (726)
Q Consensus       240 ~~rTt~i~~t~nP~WnEtf~~~v~~~---~~~L~~~V~D~d~~~-~-------~dd~lG~~~i~L~~  295 (726)
                      ...|.+...+.+|.|+|++-+.+.-.   ...|.|..|+.+-.. .       ....+|.+-+||-.
T Consensus        57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            46788888889999999999887543   558999999976210 1       13579999998844

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=81.38  E-value=4.9  Score=38.54  Aligned_cols=68  Identities=24%  Similarity=0.313  Sum_probs=53.4

Q ss_pred             CCCcEEEEEEC-CeEeecccc---CCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcceEEEEEEccccc
Q 004872          399 KCDPYVKLQYG-KIVQRTRTA---HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLV  466 (726)
Q Consensus       399 ~~dpyv~v~lg-~~~~kT~~~---~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~~~i~L~~l~  466 (726)
                      ...-|+++.++ +++.+|+..   ....-.|++.|.+.+...-..|.++||......+..|+.+.+++-...
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST  107 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence            34568999994 557777766   333456689999998877788999999988778899999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	726
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		1e-08
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		2e-08
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		1e-07
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		5e-04
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		1e-07
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		4e-04
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		9e-07
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		2e-06
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		3e-06
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		3e-06
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		9e-06
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-05
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		2e-05
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		2e-05
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		3e-05
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		6e-05
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		6e-05
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		6e-05
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		7e-05
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		2e-04
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		3e-04
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		3e-04
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		4e-04

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 13/113 (11%)
Query: 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSP 569
           G +++ +++A DL+AAD  G SDP+  ++ G+ + +T  ++K LNP+W++   FP     
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP----- 67
Query: 570 LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR 622
               ++D + +L  +       E    PP+ +    IPL  +R G+ +  + +
Sbjct: 68  ----IKDIHDVLEVTVFD----EDGDKPPDFLGKVAIPLLSIRDGQPNCYVLK 112

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 36/64 (56%)
Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDDGSPLT 571
           I + +V A+ L A D  G+SDPYV VQ G  KKRTK I+  LNP W +   F    S   
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 572 LHVR 575
           + VR
Sbjct: 79  IKVR 82

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 47/238 (19%)
Query: 383 VTVVEGKDLMPKDKSGKCDPYVKLQY----GKIVQRTRTAHSPNHVWNQKFE----LDEI 434
           V +++  DL  KD +G  DPYVK+       K  Q      + N ++N+ F+    L E+
Sbjct: 25  VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 84
Query: 435 GGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSV----RDIWVPL-----EKVNTGEL 485
              + L    Y+ + F   ++   +V L+ L+E +     R +W  +     EK + GEL
Sbjct: 85  AQRK-LHFSVYDFDRFSRHDL-IGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGEL 142
Query: 486 RLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY----GD 541
              +                    G + + I++A +L A DL G SDPYVK         
Sbjct: 143 NFSLCYLPT--------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR 188
Query: 542 LKKRTKVIFK-TLNPQWHQTLEFPDDGSP-------LTLHVRDHNALLASSSIGDCVV 591
           LKKR   I K TLNP +++ L F  D +P       L++ V D++ +  +  IG C V
Sbjct: 189 LKKRKTSIKKNTLNPTYNEALVF--DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 244

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQ-YGDLKKR--TKVIFKTLNPQWHQTLEF 563
           G+  + + I++A DL A D  G SDPYVK+    D KK+  TKV  KTLNP +++T +F
Sbjct: 19  GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 77

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 47/238 (19%)
Query: 383 VTVVEGKDLMPKDKSGKCDPYVKLQY----GKIVQRTRTAHSPNHVWNQKFE----LDEI 434
           V +++  DL  KD +G  DPYVK+       K  Q      + N ++N+ F+    L E+
Sbjct: 24  VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 83
Query: 435 GGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSV----RDIWVPL-----EKVNTGEL 485
              + L    Y+ + F   ++   +V L+ L+E +     R +W  +     EK + GEL
Sbjct: 84  AQRK-LHFSVYDFDRFSRHDL-IGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGEL 141
Query: 486 RLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY----GD 541
              +                    G + + I++A +L A DL G SDPYVK         
Sbjct: 142 NFSLCYLPT--------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR 187
Query: 542 LKKRTKVIFK-TLNPQWHQTLEFPDDGSP-------LTLHVRDHNALLASSSIGDCVV 591
           LKKR   I K TLNP +++ L F  D +P       L++ V D++ +  +  IG C V
Sbjct: 188 LKKRKTSIKKNTLNPTYNEALVF--DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQ-YGDLKKR--TKVIFKTLNPQWHQTLEF 563
           G+  + + I++A DL A D  G SDPYVK+    D KK+  TKV  KTLNP +++T +F
Sbjct: 18  GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 76

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPDDGSP--- 569
           I++A++L A D  GTSDP+VK+     KK    TKV  K LNP W++T  F  +G P   
Sbjct: 32  IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF--EGFPYEK 89
Query: 570 -----LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKW 605
                L L V D++    +  IG+  +   ++   QM   W
Sbjct: 90  VVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFW 130

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 36/148 (24%)
Query: 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY-- 539
           TGE++LQI              N   GN  I   I++AR+LV  D  G SDP+VKV    
Sbjct: 6   TGEIQLQI--------------NYDLGNLIIH--ILQARNLVPRDNNGYSDPFVKVYLLP 49
Query: 540 ------------GDLKKRTKVIFKTLNPQWHQTLEFPDDG------SPLTLHVRDHNALL 581
                        + K+RTK + K+LNP+W+QT+ +            L + V D++   
Sbjct: 50  GRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS 109
Query: 582 ASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
           ++  +G+ +++           +W PL+
Sbjct: 110 SNDFLGEVLIDLSSTSHLDNTPRWYPLK 137

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF--- 563
           + + + +A++L+  D  G SDPYVK++       + K++TK I  TLNPQW+++  F   
Sbjct: 18  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 77
Query: 564 -PDDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 617
             D    L++ + D      N  + S S G  V E  ++P    A  W  L    +GE +
Sbjct: 78  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFG--VSELMKMP----ASGWYKLLNQEEGEYY 131

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF--- 563
           + + + +A++L+  D  G SDPYVK++       + K++TK I  TLNPQW+++  F   
Sbjct: 19  LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 78
Query: 564 -PDDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 617
             D    L++ + D      N  + S S G  V E  ++P    A  W  L    +GE +
Sbjct: 79  PSDKDRRLSVEIWDWDRTTRNDFMGSLSFG--VSELMKMP----ASGWYKLLNQEEGEYY 132

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD 565
           N  + + I++A +L A D+ GTSDPYVKV     KK+   TKV  KTLNP +++   F  
Sbjct: 18  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77
Query: 566 -----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 615
                 G  L + V D +       IG+  V    +    + ++W  LQ   K E
Sbjct: 78  PYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEE 132

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 20/116 (17%)
Query: 514 LVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF----P 564
           +V+ +A++LV  D  G SDPYVK++       + K++TK I  +LNP+W++T  F     
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES 235
Query: 565 DDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 615
           D    L++ + D      N  + S S G  + E Q+       D W  L    +GE
Sbjct: 236 DKDRRLSVEIWDWDLTSRNDFMGSLSFG--ISELQK----AGVDGWFKLLSQEEGE 285

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD 565
           N  + + I++A +L A D+ GTSDPYVKV     KK+   TKV  KTLNP +++   F  
Sbjct: 16  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 75
Query: 566 -----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRK 613
                 G  L + V D +       IG+  V    +    + ++W  LQ   K
Sbjct: 76  PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK 128

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF--- 563
           + + + +A++L+  D  G SDPYVK++       + K++TK I  TLNPQW+++  F   
Sbjct: 20  LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 564 -PDDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 617
             D    L++ + D      N    S S G  V E  + P    A  W  L    +GE +
Sbjct: 80  PSDKDRRLSVEIWDWDRTTRNDFXGSLSFG--VSELXKXP----ASGWYKLLNQEEGEYY 133

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 20/116 (17%)
Query: 514 LVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF----P 564
           +V+ +A++LV  D  G SDPYVK++       + K++TK I  +LNP+W++T  F     
Sbjct: 35  VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES 94
Query: 565 DDGSPLTLHVRD-----HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 615
           D    L++ + D      N  + S S G  + E Q+       D W  L    +GE
Sbjct: 95  DKDRRLSVEIWDWDLTSRNDFMGSLSFG--ISELQK----AGVDGWFKLLSQEEGE 144

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD 565
           N  + + I++A +L A D+ GTSDPYVKV     KK+   TKV  KTLNP +++   F  
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 566 D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
                 G  L + V D +       IG+  V    +    + ++W  LQ
Sbjct: 93  PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD 565
           N  + + I++A +L A D+ GTSDPYVKV     KK+   TKV  KTLNP +++   F  
Sbjct: 41  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 100
Query: 566 -----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
                 G  L + V D +       IG+  V    +    + ++W  LQ
Sbjct: 101 PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD 565
           N  + + I++A +L A D+ GTSDPYVKV     KK+   TKV  KTLNP +++   F  
Sbjct: 33  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 566 D-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
                 G  L + V D +       IG+  V    +    + ++W  LQ
Sbjct: 93  PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 35/149 (23%)
Query: 483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY--- 539
           G L+L+I A   D+               I + + EAR+L+  D  G SDPYVK++    
Sbjct: 8   GRLQLEIRAPTADE---------------IHVTVGEARNLIPMDPNGLSDPYVKLKLIPD 52
Query: 540 --GDLKKRTKVIFKTLNPQWHQTLEF---PDD-GSPLTLHVRD-----HNALLASSSIGD 588
                K++T+ +  TLNP W++T  F   P D    L++ V D      N  + + S G 
Sbjct: 53  PRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTSRNDFMGAMSFG- 111
Query: 589 CVVEYQRLPPNQMADKWIPLQGVRKGEIH 617
            V E  + P     D W  L    +GE +
Sbjct: 112 -VSELLKAP----VDGWYKLLNQEEGEYY 135

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF 563
           N  ++  I+ A+ L   D  G +DPYVK+          K RTK +  T NP W++TL++
Sbjct: 26  NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 85
Query: 564 ----PDDGSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 611
                +D    TL +   D +    +  IG+     ++L  NQ  +  I L+ V
Sbjct: 86  HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 139

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEF 563
           N  ++  I+ A+ L   D  G +DPYVK+          K RTK +  T NP W++TL++
Sbjct: 28  NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
Query: 564 ----PDDGSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV 611
                +D    TL +   D +    +  IG+     ++L  NQ  +  I L+ V
Sbjct: 88  HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 141

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 471 RDIWVPLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGT 530
           R  WV   K    E  +  E  + +    +R Q   SG G + + ++EA +L A    G 
Sbjct: 350 RTAWVQKIKA-ASEQYIDTEKKQREKAYQARSQKT-SGIGRLMVHVIEATELKACKPNGK 407
Query: 531 SDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF-----PDDGSPLTLHVRDH 577
           S+PY ++  G     T+ I  TLNP+W+   +F       D   LTL  RD 
Sbjct: 408 SNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ 459

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQY--GDLKK-----RTKVIFKTLNPQWHQTLEFP 564
           + + +V   DL   D+ G SDPYVK+     D  +     +TK I KTLNP+W++   F 
Sbjct: 23  LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 565 DDGS--PLTLHVRDHNALLASSSIGDCVVEYQRLP 597
            + S   L   V D N L     +G   V    LP
Sbjct: 83  VNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLP 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	726
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-37
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	4e-35
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	5e-27
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-31
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-29
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-22
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-28
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-24
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	5e-26
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-25
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	9e-26
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	1e-23
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-25
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-20
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	7e-25
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-21
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	5e-24
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-18
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	2e-23
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	3e-18
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-23
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	3e-19
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-22
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	1e-13
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	3e-22
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	3e-12
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-19
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	6e-16
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	4e-19
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-17
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	5e-19
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-12
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-18
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	1e-12
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-18
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	5e-12
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	3e-18
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	9e-12
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	7e-18
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-13
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	3e-17
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	5e-09
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-16
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	5e-11
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	1e-16
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	6e-08
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	1e-15
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	4e-10
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-15
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	4e-09
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	3e-15
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-11
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	2e-14
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	3e-08
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	5e-14
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	9e-07
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	7e-14
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	3e-08
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-13
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	3e-08
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	3e-13
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	8e-08
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	6e-13
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	8e-08
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	6e-13
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	7e-07
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	9e-13
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-07
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-12
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-08
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	4e-11
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-07
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	2e-10
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	2e-09
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	4e-10
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	1e-08
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	3e-07
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	1e-06
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	7e-06
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	3e-06

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  140 bits (355), Expect = 1e-37
 Identities = 59/278 (21%), Positives = 112/278 (40%), Gaps = 38/278 (13%)

Query: 375 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTAH-SPNHVWNQKFE 430
                ++ V +++  +L   D  G  DPYVK   L   K    T+    + N V+N++F 
Sbjct: 15  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 74

Query: 431 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELR 486
                    G+ L++  Y+ + F   + +G  +V +  +  G V + W  L+     E  
Sbjct: 75  FKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134

Query: 487 LQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL---- 542
              +         + G+        + +VI+EA++L   D+ G SDPYVK+         
Sbjct: 135 KLGDICFSLRYVPTAGK--------LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRL 186

Query: 543 -KKRTKVIFKTLNPQWHQTLEF-----PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRL 596
            KK+T +   TLNP ++++  F           + + V D++ +  + +IG   V Y   
Sbjct: 187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 246

Query: 597 P------------PNQMADKWIPLQGVRKGEIHVLITR 622
                        P +   +W  LQ   + +  + + +
Sbjct: 247 GAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAVKK 284

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  128 bits (325), Expect = 4e-35
 Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP--DDG 567
           G +++ +++A DL+AAD  G SDP+  ++ G+ + +T  ++K LNP+W++   FP  D  
Sbjct: 13  GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH 72

Query: 568 SPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMAD---KWIPLQGVRKGEIHVLIT 621
             L + V D +       +G   +    +   Q      K   L+   KG I++ + 
Sbjct: 73  DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 129

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  105 bits (265), Expect = 5e-27
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 6/128 (4%)

Query: 368 SGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWN 426
           SGSS  +   G  + V V++  DL+  D SGK DP+  L+ G    +T T + + N  WN
Sbjct: 3   SGSSGDVKDVGI-LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWN 61

Query: 427 QKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW---VPLEKVNT 482
           + F        + L V  ++E+     + +G   + L  + +G           LE+   
Sbjct: 62  KVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFK 121

Query: 483 GELRLQIE 490
           G + L+++
Sbjct: 122 GVIYLEMD 129

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  124 bits (312), Expect = 1e-31
 Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 39/242 (16%)

Query: 375 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ---YGKIVQRTRTAH-SPNHVWNQKFE 430
                ++ V +++  DL  KD +G  DPYVK+      K   +T+    + N ++N+ F+
Sbjct: 16  LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 75

Query: 431 LD---EIGGGECLMVKCYNEEIFG-DENMGSARV--NLEGLVEGSVRDIWVPL-----EK 479
                       L    Y+ + F   + +G   +   LE   +   R +W  +     EK
Sbjct: 76  FSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK 135

Query: 480 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY 539
            + GEL   +                    G + + I++A +L A DL G SDPYVK   
Sbjct: 136 ADLGELNFSLCYL--------------PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASL 181

Query: 540 GD-----LKKRTKVIFKTLNPQWHQTLEFP-----DDGSPLTLHVRDHNALLASSSIGDC 589
                   K++T +   TLNP +++ L F       +   L++ V D++ +  +  IG C
Sbjct: 182 ISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVC 241

Query: 590 VV 591
            V
Sbjct: 242 RV 243

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  112 bits (283), Expect = 2e-29
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 14/125 (11%)

Query: 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP----- 564
           G + +++  A ++      G  DP V V + D KK+TK +   LNP W++ LEF      
Sbjct: 7   GMLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIP 65

Query: 565 -DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPL-------QGVRKGEI 616
            D  S L + V+D   +  +  IG   V  + L  +Q       L              I
Sbjct: 66  LDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATI 125

Query: 617 HVLIT 621
            ++I 
Sbjct: 126 DLVIG 130

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 93.2 bits (232), Expect = 1e-22
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 14/129 (10%)

Query: 375 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SPNHVWNQKFELD- 432
           S +   + V V    ++ PK K GK DP V + +    ++T+      N VWN+  E D 
Sbjct: 3   SGSSGMLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDL 61

Query: 433 ---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNT------ 482
               +     L +   + E  G ++ +G+A V L+ L     R +   L  +        
Sbjct: 62  RGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDT 121

Query: 483 -GELRLQIE 490
              + L I 
Sbjct: 122 GATIDLVIG 130

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  109 bits (275), Expect = 2e-28
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 20/133 (15%)

Query: 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF--PDDG 567
             I + +V A+ L A D  G+SDPYV VQ G  KKRTK I+  LNP W +   F   +  
Sbjct: 17  AKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSS 76

Query: 568 SPLTLHVRDHNALLASSS-----------IGDCVVEYQRLPPNQMADKWIPLQ-----GV 611
             + + V D +  + S             +G  ++E + L      D W  L        
Sbjct: 77  DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM--DVWYNLDKRTDKSA 134

Query: 612 RKGEIHVLITRKV 624
             G I + I+ ++
Sbjct: 135 VSGAIRLHISVEI 147

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 99.1 bits (247), Expect = 2e-24
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 24/146 (16%)

Query: 363 SQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH-SP 421
            Q  L G+S + +    KI++TVV  + L  KDK+G  DPYV +Q GK  +RT+T + + 
Sbjct: 5   KQSVLDGTSKWSA----KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNL 60

Query: 422 NHVWNQKFELDEIGGGECLMVKCYNEEIFG------------DENMGSARVNLEGLVEGS 469
           N VW + F  +     + + V+  +E+               D+ +G   + +  L    
Sbjct: 61  NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM 120

Query: 470 VRDIWVPLEKVN-----TGELRLQIE 490
             D+W  L+K       +G +RL I 
Sbjct: 121 --DVWYNLDKRTDKSAVSGAIRLHIS 144

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  102 bits (257), Expect = 5e-26
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 516 IVEARDLV---AADLRGTSDPYVKVQYGDL---KKRTKVIFKTLNPQWHQTLEFP---DD 566
           ++ A  +      D+  T DPYV++        +KRT+     +NP W++T EF    + 
Sbjct: 9   VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ 68

Query: 567 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 621
            + L + + D N  +   ++G        +   +  +       V +  + + + 
Sbjct: 69  ENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLE 122

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  101 bits (254), Expect = 1e-25
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 8/122 (6%)

Query: 377 TGRKINVTVVEGKDLM---PKDKSGKCDPYVKLQYG---KIVQRTRTAH-SPNHVWNQKF 429
           +  K  V V+    +      D     DPYV+L         +RTR  +   N VWN+ F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 430 ELD-EIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQ 488
           E   +      L +   +     DE +G+A   +  +  G  +++     +V    L + 
Sbjct: 61  EFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 120

Query: 489 IE 490
           +E
Sbjct: 121 LE 122

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  102 bits (255), Expect = 9e-26
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTLEF--PDD 566
           G +E+V+V A+ L  AD     DPYV++      +++ V       P+W++T  F   + 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69

Query: 567 GSPLTLHVRDHNALLASSSIGDCVVEYQRL-PPNQMADKWIPLQ--GVRKGEIHVLIT 621
            + L   + D +      ++G+  +  + +     +      +      KGEI V ++
Sbjct: 70  TTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 96.3 bits (240), Expect = 1e-23
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 369 GSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP--NHVWN 426
           GSS      G  + V +V  K L   D     DPYV+L      Q++  A        WN
Sbjct: 1   GSSGSSGPHG-TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWN 59

Query: 427 QKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLV-EGSVRDIWVPL--EKVNT 482
           + F      G   L  K +++++   D+ +G A + LE +  EGS+      +  ++   
Sbjct: 60  ETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYK 119

Query: 483 GELRLQIE 490
           GE+ + + 
Sbjct: 120 GEIWVALS 127

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score =  101 bits (253), Expect = 2e-25
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 17/128 (13%)

Query: 509 NGWIELVIVEARDLVAADLR-----------GTSDPYVKVQYGDLK-KRTKVIFKTLNPQ 556
           NG +++ I EA  L                    DPY+ +   D +  +T    KT +P 
Sbjct: 5   NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPA 64

Query: 557 WHQTLEFP-DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMA--DKWIPLQGVRK 613
           WH        +G  + L V     +     + +C ++++ L  N     + WI L+   +
Sbjct: 65  WHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--E 122

Query: 614 GEIHVLIT 621
           G+++V+I 
Sbjct: 123 GKVYVIID 130

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 87.2 bits (216), Expect = 1e-20
 Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 19/127 (14%)

Query: 380 KINVTVVEGKDLMPKDKSGK-----------CDPYVKLQYGKI-VQRTRTAHSPNH-VWN 426
            + + + E   L P   S +            DPY+ L      + +T T    N   W+
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 427 QKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVR--DIWVPLEKVNTG 483
            +F  D +  G  + +  +++   G D+ + +  +  E L++   R  + W+ LE    G
Sbjct: 67  DEFVTD-VCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EG 123

Query: 484 ELRLQIE 490
           ++ + I+
Sbjct: 124 KVYVIID 130

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  101 bits (252), Expect = 7e-25
 Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 15/151 (9%)

Query: 499 GSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWH 558
           GS G         +++ ++ A+            PYV+V      K+T+    T +P+W 
Sbjct: 27  GSMGSLTMKSQ--LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWK 84

Query: 559 QTLEFP-DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ---MADKWIPLQ----- 609
           Q L       S L   V  H  L +   +G   ++      +    + +  + LQ     
Sbjct: 85  QPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK 144

Query: 610 --GVRKGEIHVLITRKVPELDKRTSIDSDSS 638
                 G++ + +     +L+     + +++
Sbjct: 145 EPTETIGDLSICLDG--LQLESEVVTNGETT 173

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 90.7 bits (225), Expect = 2e-21
 Identities = 27/155 (17%), Positives = 63/155 (40%), Gaps = 17/155 (10%)

Query: 361 SGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHS 420
           SGSQ    GS    S    ++ +TV+  K    K       PYV++      ++T   ++
Sbjct: 22  SGSQLGSMGSLTMKS----QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN 77

Query: 421 PNH-VWNQKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVE---GSVRDIWV 475
            N   W Q   +  +     L  + ++ +    D  +G+A +++   ++     + ++ V
Sbjct: 78  TNSPKWKQPLTVI-VTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVV 136

Query: 476 PLEK-------VNTGELRLQIEATRVDDNEGSRGQ 503
            L+           G+L + ++  +++    + G+
Sbjct: 137 TLQLGGDKEPTETIGDLSICLDGLQLESEVVTNGE 171

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 97.9 bits (244), Expect = 5e-24
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 19/132 (14%)

Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL------KKRTKVIFKTLNPQWHQTLE 562
           +  + + ++    L   D+ G SDPYV+V   D         +TK I K+LNP+W++ + 
Sbjct: 19  SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78

Query: 563 F--PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMAD------KWIPLQ----- 609
           F        L   V D N L     +G   V    LP            K   L      
Sbjct: 79  FRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHK 138

Query: 610 GVRKGEIHVLIT 621
              KG + + +T
Sbjct: 139 SRVKGYLRLKMT 150

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 82.5 bits (204), Expect = 1e-18
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 19/131 (14%)

Query: 378 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG------KIVQRTRTAH-SPNHVWNQKFE 430
            R + V V+ G  L  KD  G  DPYV++             +T+T   S N  WN++  
Sbjct: 19  SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78

Query: 431 LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEK---------- 479
                    L+ + ++E     D+ +G   V L  L   + R       K          
Sbjct: 79  FRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHK 138

Query: 480 -VNTGELRLQI 489
               G LRL++
Sbjct: 139 SRVKGYLRLKM 149

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 97.3 bits (242), Expect = 2e-23
 Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 19/129 (14%)

Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL------KKRTKVIFKTLNPQWHQTLE 562
              + + ++    L   D+ G SDPYV+V   D         +TK I K+LNP+W++ + 
Sbjct: 7   TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEIL 66

Query: 563 FP--DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQM------ADKWIPLQ----- 609
           F        +   V D N L     +G   V    LP            K   L      
Sbjct: 67  FRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126

Query: 610 GVRKGEIHV 618
              KG + +
Sbjct: 127 SRVKGYLRL 135

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 81.9 bits (202), Expect = 3e-18
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 19/130 (14%)

Query: 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG------KIVQRTRTAH-SPNHVWNQKFEL 431
           R + V V+ G  L  KD  G  DPYV++             +T+T   S N  WN++   
Sbjct: 8   RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67

Query: 432 DEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEK----------- 479
             +     ++ + ++E     D+ +G   V L  L   + R       K           
Sbjct: 68  RVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS 127

Query: 480 VNTGELRLQI 489
              G LRL++
Sbjct: 128 RVKGYLRLKM 137

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 96.2 bits (239), Expect = 2e-23
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 18/129 (13%)

Query: 509 NGWIELVIVEARDLVAADLRG----------TSDPYVKVQYGDLKK-RTKVIFKTLNPQW 557
           NG++ + I EA  L                   DPY+ V    ++  +T    KT  P +
Sbjct: 28  NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTY 87

Query: 558 HQTLEFP-DDGSPLTLHVRDHNALLASSSIGDCVVEYQRL----PPNQMADKWIPLQGVR 612
           ++       DG  L L V     L     + +C +++Q L      +   + W+ L+   
Sbjct: 88  NEEFCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE--P 145

Query: 613 KGEIHVLIT 621
           +G++ V+IT
Sbjct: 146 EGKVFVVIT 154

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 84.6 bits (209), Expect = 3e-19
 Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 21/156 (13%)

Query: 352 GSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGK----------CD 401
            SH  ++  SG     S SS  +   G  + V + E   L P   S +           D
Sbjct: 3   SSHHHHHHSSGLVPRGSMSSGTMKFNG-YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLD 61

Query: 402 PYVKLQYG-KIVQRTRT-AHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFG-DENMGSA 458
           PY+ +      V +T T   +    +N++F  + +  G  L +  ++E   G D  + + 
Sbjct: 62  PYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCAN-VTDGGHLELAVFHETPLGYDHFVANC 120

Query: 459 RVNLEGLVEGS----VRDIWVPLEKVNTGELRLQIE 490
            +  + L+  +      + WV LE    G++ + I 
Sbjct: 121 TLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVIT 154

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 92.4 bits (230), Expect = 3e-22
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 496 DNEGSRGQ---NIGSGNGWIELVIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTK 547
           D+   RG+           + +V+ +A++LV  D  G SDPYVK+        + K++TK
Sbjct: 14  DSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK 73

Query: 548 VIFKTLNPQWHQTLEFP----DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMAD 603
            I  +LNP+W++T  F     D    L++ + D +    +  +G        L    + D
Sbjct: 74  TIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-D 132

Query: 604 KWIPLQGVRKGEI 616
            W  L    +GE 
Sbjct: 133 GWFKLLSQEEGEY 145

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 10/116 (8%)

Query: 378 GRKINVTVVEGKDLMPKDKSGKCDPYVKL-----QYGKIVQRTRTA-HSPNHVWNQ--KF 429
              + V V + K+L+P D +G  DPYVKL        +  Q+T+T   S N  WN+  +F
Sbjct: 30  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89

Query: 430 ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 484
           +L E      L V+ ++ ++   ++ MGS    +  L + +  D W  L     GE
Sbjct: 90  QLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL-QKAGVDGWFKLLSQEEGE 144

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQ-----YGDLKKRTKVIFKTLNPQWHQTLEF----PDD 566
           I+ A+ L   D  G +DPYVK+          K RTK +  T NP W++TL++     +D
Sbjct: 35  IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94

Query: 567 GSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
               TL +   D +    +  IG+     ++L  NQ  +  I L+
Sbjct: 95  MQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 74.3 bits (183), Expect = 6e-16
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 11/117 (9%)

Query: 375 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ-----YGKIVQRTRTAH-SPNHVWNQK 428
            +    +  T++  K L P D +G  DPYVKL            RT+T   + N VWN+ 
Sbjct: 25  DQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNET 84

Query: 429 FELDEIGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKV 480
            +   I   +     L +   +E+ FG +E +G  R +L+ L     ++  + LE+V
Sbjct: 85  LQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV 141

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 83.2 bits (206), Expect = 4e-19
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 506 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY--GDLKKRTKVIFKTLNPQWHQTLEF 563
           GS    I L ++ A++L   D     DP+ K+          T  +  TL+P+W+Q  + 
Sbjct: 1   GSEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDL 60

Query: 564 P-DDGSPLTLHVRDHN 578
                  +T+ V +H 
Sbjct: 61  YVGKTDSITISVWNHK 76

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 19/133 (14%)

Query: 378 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSP---NHVWNQKFELDEI 434
             KI +TV+  K+L  KD     DP+ K+      Q   T       +  WNQ ++L  +
Sbjct: 4   FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDL-YV 62

Query: 435 GGGECLMVKCYNEEIFGDEN----MGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 490
           G  + + +  +N +    +     +G  R+    +               +TG  RL + 
Sbjct: 63  GKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLK-----------DTGYQRLDLC 111

Query: 491 ATRVDDNEGSRGQ 503
                D +  RGQ
Sbjct: 112 KLNPSDTDAVRGQ 124

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 83.2 bits (206), Expect = 5e-19
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 20/115 (17%)

Query: 515 VIVEARDLVAADLRGTSDPYVKV--------------QYGDLKKRTKVIFKTLNPQWHQT 560
            I++AR+LV  D  G SDP+VKV                 + K+RTK + K+LNP+W+QT
Sbjct: 23  HILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82

Query: 561 LEFP----DDGSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
           + +     +     TL V   D++   ++  +G+ +++           +W PL+
Sbjct: 83  VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 20/120 (16%)

Query: 379 RKINVTVVEGKDLMPKDKSGKCDPYVKL--------------QYGKIVQRTRTAH-SPNH 423
             + + +++ ++L+P+D +G  DP+VK+                 +  +RT+    S N 
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 424 VWNQKFELDEIGGGEC----LMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 478
            WNQ      I   +     L V  ++ + F  ++ +G   ++L           W PL+
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 8/102 (7%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQ---YGDLKKRTKVIFKTLNPQWHQTLEF---PDDGSP 569
           I++A +L A D+ GTSDPYVKV        K  TKV  KTLNP +++   F     +   
Sbjct: 40  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99

Query: 570 LTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
            TL +   D +       IG+  V    +    + ++W  LQ
Sbjct: 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 375 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ---YGKIVQRTRTAH-SPNHVWNQKFE 430
                ++ V +++  +L   D  G  DPYVK+      K    T+    + N V+N++F 
Sbjct: 30  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 89

Query: 431 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 478
                   GG+ L++  Y+ + F   + +G  +V +  +  G V + W  L+
Sbjct: 90  FKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 81.3 bits (201), Expect = 2e-18
 Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 13/148 (8%)

Query: 476 PLEKVNTGELRLQIEATRVDDNEGSRGQ-----NIGSGNGWIELVIVEARDLVAADLRGT 530
           P      G +   +        E   G+     +    N  + + I++A +L A D+ GT
Sbjct: 3   PGISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGT 62

Query: 531 SDPYVKVQ---YGDLKKRTKVIFKTLNPQWHQTLEF---PDDGSPLTLH--VRDHNALLA 582
           SDPYVKV        K  TKV  KTLNP +++   F     +    TL   V D +    
Sbjct: 63  SDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSK 122

Query: 583 SSSIGDCVVEYQRLPPNQMADKWIPLQG 610
              IG+  V    +    + ++W  LQ 
Sbjct: 123 HDIIGEFKVPMNTVDFGHVTEEWRDLQS 150

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 63.2 bits (154), Expect = 5e-12
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 375 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ---YGKIVQRTRTAH-SPNHVWNQKFE 430
                ++ V +++  +L   D  G  DPYVK+      K    T+    + N V+N++F 
Sbjct: 38  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 97

Query: 431 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 478
                   GG+ L++  Y+ + F   + +G  +V +  +  G V + W  L+
Sbjct: 98  FKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 80.8 bits (200), Expect = 3e-18
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 14/108 (12%)

Query: 515 VIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEF----PD 565
            I+ A+DL + +     +PYVK+     +    K+RTK + KTL P+W+QT  +      
Sbjct: 23  TILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR 82

Query: 566 DGSPLTLHVR--DHNALLASSS--IGDCVVEYQRLPPNQMADKWIPLQ 609
           +     L +   D   +    S  +G+ ++E +    +     W  LQ
Sbjct: 83  EFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQ 129

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 61.9 bits (151), Expect = 9e-12
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 14/117 (11%)

Query: 375 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKL-----QYGKIVQRTRTAH-SPNHVWNQK 428
            + G ++ VT++  KDL  ++     +PYVK+     +  K  +RT+T   +    WNQ 
Sbjct: 14  DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 73

Query: 429 FELDEIGGGE----CLMVKCYNEEIFG-DEN--MGSARVNLEGLVEGSVRDIWVPLE 478
           F    +   E     L +  +++     +E+  +G   + LE          W  L+
Sbjct: 74  FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQ 129

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 79.7 bits (197), Expect = 7e-18
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQY---GDLKKRTKVIFKTLNPQWHQTLEF----PDDGS 568
           I++A++L A D  GTSDP+VK+        K  TKV  K LNP W++T  F     +   
Sbjct: 32  IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVV 91

Query: 569 PLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
              L+++  D++    +  IG+  +   ++   QM   W  L+
Sbjct: 92  QRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLK 134

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTAH-SPNHVWNQKFELD 432
               + V +++ ++L  KD SG  DP+VK+      K    T+    + N  WN+ F  +
Sbjct: 24  QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 83

Query: 433 EIGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEK 479
                +     L ++  + + F  ++ +G   + L  +    ++  W  L+ 
Sbjct: 84  GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKP 135

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 79.1 bits (195), Expect = 3e-17
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 14/142 (9%)

Query: 509 NGWIELVIVEARDLVAADL-RGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLE 562
            G +E+ ++ AR L      + T  PYVKV          KK+T++  KTL+P + Q+L 
Sbjct: 29  KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88

Query: 563 FPDDGSPLTLHV---RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVL 619
           F +      L V    D+  +     +G   +  + L  + M   W  L          L
Sbjct: 89  FDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLF-----PPSSL 143

Query: 620 ITRKVPELDKRTSIDSDSSSTR 641
           +   +  L +R S  S  SS+ 
Sbjct: 144 VDPTLAPLTRRASQSSLESSSG 165

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 55.2 bits (133), Expect = 5e-09
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 374 ISRTGRKINVTVVEGKDLMPKDKS-GKCDPYVKL-----QYGKIVQRTRTA-HSPNHVWN 426
           +     ++ V V+  + L  K  S     PYVK+           ++TR A  + + ++ 
Sbjct: 25  MEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQ 84

Query: 427 QKFELDEIGGGECLMVKCYNEEIFGDEN--MGSARVNLEGLVEGSVRDIWVPL 477
           Q    DE   G+ L V  + +    D    MG A++ LE L   S+   W  L
Sbjct: 85  QSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 515 VIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEF----PD 565
            I+ A+DL + +     +PYVK+     +    K+RTK + KTL P+W+QT  +      
Sbjct: 26  TILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR 85

Query: 566 DGSPLTLHVR--DHNALLASSS--IGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 617
           +     L +   D   +    S  +G+ ++E +    +     W  LQ    G   
Sbjct: 86  EFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSGPSS 140

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 14/115 (12%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVKL-----QYGKIVQRTRTAH-SPNHVWNQKFE 430
            G ++ VT++  KDL  ++     +PYVK+     +  K  +RT+T   +    WNQ F 
Sbjct: 19  VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFI 78

Query: 431 LDEIGGGE----CLMVKCYNEEIFG-DEN--MGSARVNLEGLVEGSVRDIWVPLE 478
              +   E     L +  +++     +E+  +G   + LE          W  L+
Sbjct: 79  YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQ 132

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 11/114 (9%)

Query: 515 VIVEARDLVAADL-RGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEF---PD 565
            + E   L  AD  +  S+PYVK      +    K++T +   T+NP + +TL +     
Sbjct: 28  HVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPES 87

Query: 566 DGSPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIH 617
             +  TL      H     ++ +G+  ++      ++  D  +PL G    E  
Sbjct: 88  LLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISAESE 141

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 17/124 (13%)

Query: 375 SRTGRKINVTVVEGKDLMPKD-KSGKCDPYVKLQ-------YGKIVQRTRTAH-SPNHVW 425
            +  + + V V E   L   D    + +PYVK          GK  ++T     + N ++
Sbjct: 19  EQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGK--RKTSIKRDTVNPLY 76

Query: 426 NQKFE----LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKV 480
           ++          +     L    ++   FG +  +G A + ++        D  +PL   
Sbjct: 77  DETLRYEIPESLL-AQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135

Query: 481 NTGE 484
            + E
Sbjct: 136 ISAE 139

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 73.6 bits (181), Expect = 1e-15
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEF 563
           +  + L I+E + L++    GT DPYVK+           ++T+ +    +P +H+   F
Sbjct: 26  DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFF 84

Query: 564 P----DDGSPLTLHVRDHNALLASSS-IGDCVVEYQRLP-PNQMADKWIPLQGVRKGEIH 617
           P    DD   L + V +  +    S  IG      + L  P++    W  L G   G   
Sbjct: 85  PVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRTK 144

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 15/143 (10%)

Query: 356 LNNFHSGSQQSLSGSSNF---ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKL-----Q 407
           + + H      + G+      I    R + + ++EGK L+ K   G CDPYVK+      
Sbjct: 1   MGHHHHHHSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPED 59

Query: 408 YGKIVQRTRTA-HSPNHVWNQ--KFELDEIGGGECLMVKCYNEEIFGDEN--MGSARVNL 462
                Q+T+T     +  +++   F + E    + L+V  +N      ++  +G     +
Sbjct: 60  SRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGV 119

Query: 463 EGLVEGS-VRDIWVPLEKVNTGE 484
           + L+        W  L   + G 
Sbjct: 120 KSLLTPDKEISGWYYLLGEHLGR 142

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 12/106 (11%)

Query: 516 IVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEFPD----- 565
           ++  +DLV  D     +PYVK       +   K++TK+  KT NP +++ L +       
Sbjct: 26  VMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKET 84

Query: 566 -DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG 610
                L L V    +L  +  +G   +  +    ++   KW  L  
Sbjct: 85  LRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 16/113 (14%)

Query: 379 RKINVTVVEGKDLMPKDKSGKCDPYVKL-------QYGKIVQRTRTA-HSPNHVWNQKFE 430
             + + V+  KDL+ +D     +PYVK        +  K  ++T+ +  + N  +N+   
Sbjct: 20  GTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSK--RKTKISRKTRNPTFNEMLV 76

Query: 431 LDEIGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 478
                        L +   + E    +  +G   + L+          W  L 
Sbjct: 77  YSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 78.8 bits (193), Expect = 3e-15
 Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 10/164 (6%)

Query: 516 IVEARDL---VAADLRGTSDPYVKVQYGDL---KKRTKVIFKTLNPQWHQTLEF---PDD 566
           ++ A  +      D+  T DPYV++        +KRT+     +NP W++T EF   P+ 
Sbjct: 24  VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ 83

Query: 567 GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVPE 626
            + L + + D N  +   ++G        +   +  +       V +  + + +      
Sbjct: 84  ENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVCSCP 142

Query: 627 LDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELST 670
             + +    D   T   +    +++ M K     + + L     
Sbjct: 143 DLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGLHSARD 186

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 66.1 bits (160), Expect = 2e-11
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 383 VTVVEGKDLM---PKDKSGKCDPYVKLQYGKIV-QRTRTAHSPNH---VWNQKFELD-EI 434
           V V+    +      D     DPYV+L        R RT H  N    VWN+ FE   + 
Sbjct: 22  VVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 81

Query: 435 GGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVP 476
                L +   +     DE +G+A   +  +  G  +++   
Sbjct: 82  NQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFI 123

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 28/120 (23%)

Query: 515 VIVEARDLVAADLRGTSDPYVKVQYGDL--------KKRTKVIFKTLNPQWHQTLEFP-- 564
            I++AR+L A D+ GTSDPYVKV    L        KK+T    + LNP ++++  F   
Sbjct: 21  NIIKARNLKAMDIGGTSDPYVKVW---LMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77

Query: 565 ---DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP------------PNQMADKWIPLQ 609
                 + + + V D + L  +  IG   + ++  P            P Q   +W  L+
Sbjct: 78  TEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLK 137

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 19/100 (19%), Positives = 45/100 (45%), Gaps = 18/100 (18%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF- 429
           +   I V +++ ++L   D  G  DPYVK   +   K V++ +T     + N ++N+ F 
Sbjct: 14  SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFA 73

Query: 430 ------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNL 462
                 +L E      +++   +++    ++ +G   ++ 
Sbjct: 74  FDIPTEKLRET----TIIITVMDKDKLSRNDVIGKIYLSW 109

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 13/107 (12%)

Query: 515 VIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEF---PDD 566
           V+   R+L+A    G SDPYV++     +    +++T V  KTLNP + Q+ +F     +
Sbjct: 29  VVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE 87

Query: 567 GSPLTLH--VRDHNALLASSS--IGDCVVEYQRLPPNQMADKWIPLQ 609
               TL   V++    L+     +G  +V        +   +W  L 
Sbjct: 88  VQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLT 134

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 19/118 (16%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVKL-------QYGKIVQRTRTA-HSPNHVWNQK 428
              K+ V V   ++L+   + G  DPYV++       + G+  ++T  +  + N V++Q 
Sbjct: 22  QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGR--RKTHVSKKTLNPVFDQS 78

Query: 429 FE----LDEIGGGECLMVKCYNEEIFG-DEN--MGSARVNLEGLVEGSVRDIWVPLEK 479
           F+    L E+     L V   N   F   +   +G   V L           W  L +
Sbjct: 79  FDFSVSLPEV-QRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTE 135

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 69.0 bits (169), Expect = 7e-14
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 22/126 (17%)

Query: 515 VIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEFP----- 564
           VI+EA++L   D+ G SDPYVK+          KK+T +   TLNP ++++  F      
Sbjct: 30  VILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ 89

Query: 565 DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP------------PNQMADKWIPLQGVR 612
                + + V D++ +  + +IG   V Y                P +   +W  LQ   
Sbjct: 90  IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE 149

Query: 613 KGEIHV 618
           + +  +
Sbjct: 150 EVDAML 155

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 18/100 (18%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF- 429
           T  K+ V ++E K+L   D  G  DPYVK   +Q GK +++ +T    ++ N  +N+ F 
Sbjct: 23  TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 82

Query: 430 ------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNL 462
                 ++ ++     ++V   + +  G ++ +G   V  
Sbjct: 83  FEVPFEQIQKV----QVVVTVLDYDKIGKNDAIGKVFVGY 118

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 12/103 (11%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQ----YGDLKKRTKVIFKTLNPQWHQTLEFP---DDGS 568
            +EA      +  G  D YV+       G ++ +T +  + L+  W + L  P   ++  
Sbjct: 32  RLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELP 88

Query: 569 PLTLH--VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
             TL   +R  +     S  G+  +          A +W  L+
Sbjct: 89  TATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELK 131

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 14/115 (12%)

Query: 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQ----YGKIVQRTRTAH-SPNHVWNQKFE--- 430
            ++ VT +E       +  G CD YV+       G +  +T       +  W +      
Sbjct: 26  AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 431 -LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTG 483
             +E+     L +     + F      G  R+ L+G         W  L+     
Sbjct: 83  AEEEL-PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGPS 136

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 515 VIVEARDLVAADLRGTSDPYVKVQ-----YGDLKKRTKVIFKTLNPQWHQTLEFP----- 564
           V+++AR L  +D+ G SDPYVKV          KK+T V   T N  +++   F      
Sbjct: 35  VVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES 94

Query: 565 DDGSPLTLHVRDHNALLASSSIGDCVV 591
            +   +   V D      +  IG  V+
Sbjct: 95  LEEISVEFLVLDSERGSRNEVIGRLVL 121

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 20/112 (17%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF- 429
           T   + V V++ + L   D SG  DPYVK       K + + +T     +PN V+N+ F 
Sbjct: 28  TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV 87

Query: 430 ------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIW 474
                  L+EI     +     + E    +E +G  R+ L    EGS    W
Sbjct: 88  FDIPCESLEEI----SVEFLVLDSERGSRNEVIG--RLVLGATAEGSGGGHW 133

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 65.9 bits (161), Expect = 6e-13
 Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 15/109 (13%)

Query: 516 IVEARDLVAA-------DLRGTSDPYVKVQY---GDLKKRTKVIFKTLNPQWHQTLEF-- 563
           ++EARDL               S+PYVK+         K+T V  KT  P + +   F  
Sbjct: 32  VIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEI 91

Query: 564 -PDDGSPLTLH--VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
              +    TL   V D +       IG   V    +   +    W  L 
Sbjct: 92  PFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 17/120 (14%)

Query: 375 SRTGRKINVTVVEGKDLMP-------KDKSGKCDPYVKLQY---GKIVQRTRTAH-SPNH 423
                 + V V+E +DL P       +      +PYVK+      K  ++T     +   
Sbjct: 22  DLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKP 81

Query: 424 VWNQKFE----LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 478
           V+ +++       E      L++   + + F     +G   V L  +        W  L 
Sbjct: 82  VFEERYTFEIPFLEA-QRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 66.3 bits (162), Expect = 6e-13
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 515 VIVEARDLVAADLRGTSDPYVKVQ-----YGDLKKRTKVIFKTLNPQWHQTLEF---PDD 566
            I+    L A D  G SDP+VK+          K +T++  KTLNP++++   +     D
Sbjct: 42  GIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD 101

Query: 567 --GSPLTLHVRDHNALLASSSIGDCVV 591
                L + V D++   ++  IG C +
Sbjct: 102 LAKKSLDISVWDYDIGKSNDYIGGCQL 128

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 20/115 (17%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTA---HSPNHVWNQKF- 429
               + V ++    L   D +G  DP+VK           + +T     + N  +N++F 
Sbjct: 35  QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFF 94

Query: 430 ------ELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPL 477
                 +L +      L +  ++ +I   ++ +G  ++ +    E      W   
Sbjct: 95  YDIKHSDLAKK----SLDISVWDYDIGKSNDYIGGCQLGISAKGER--LKHWYEC 143

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 70.3 bits (171), Expect = 9e-13
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP--- 564
           G   + +    A  L        +D Y+KV +G  + RT V++   NP+W   ++F    
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTT-ATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVL 450

Query: 565 -DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHV 618
              G PL + V D +       +G C             +    L     G +  
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGSCDRSPHSG----FHEVTCELN---HGRVKF 498

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 53.8 bits (128), Expect = 1e-07
 Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 12/119 (10%)

Query: 378 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH-VWNQKFELD--EI 434
              + V+    + L     +   D Y+K+ +G    RT    + N+  W  K + +   +
Sbjct: 393 LAHLVVSNFRAEHLWGDY-TTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLL 451

Query: 435 GGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT 492
             G  L V+ ++ +    D+ +GS   +      G   ++   L   N G ++    A 
Sbjct: 452 STGGPLRVQVWDADYGWDDDLLGSCDRSPH---SGFH-EVTCEL---NHGRVKFSYHAK 503

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 516 IVEARDLVAADLRG-TSDPYVKVQ---YGDLKKRTKVIFKTLNPQWHQTLEF----PDDG 567
           I EAR L A D +  TSDPY+K+        K +T+V+ KTL+P + +T  F        
Sbjct: 28  IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQI 87

Query: 568 SPLTLHVR--DHNALLASSSIGDCVVEYQRLPPNQ 600
             L LH      +       IG+ ++    +  ++
Sbjct: 88  QELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 10/99 (10%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGK-CDPYVKLQ---YGKIVQRTRTAH-SPNHVWNQKFEL 431
             +   V + E + L   D+     DPY+K+      K   +TR    + +  +++ F  
Sbjct: 20  ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79

Query: 432 DEIGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGL 465
             I   +     L     + + F  D+ +G   + L G+
Sbjct: 80  YGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 9/68 (13%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQ------YGDLKKRTKVIFKTLNPQWHQTLEFP---DD 566
           I++  +L A   +      ++V             RT+ +  +    +++          
Sbjct: 49  IIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPA 108

Query: 567 GSPLTLHV 574
               TL V
Sbjct: 109 LHQKTLRV 116

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ----YGKIVQRTRTA---HSPNHVWNQKF 429
             ++  + +++  +L    +       +++             RT     S   V+N+ F
Sbjct: 41  KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVF 100

Query: 430 E----LDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGL-VEGSVRDIWVPL 477
                   +     L V     +    +E +G A+++L  +   G     W  L
Sbjct: 101 WVSMSYPALHQKT-LRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 382 NVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLM 441
            V V + K    ++K    + YV L+   +   T         W Q F  +       L 
Sbjct: 8   CVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLT 64

Query: 442 VKCYNEEIFGDENMGSARVNLEGLVEGSVR--DIWVPLEK 479
           V+ +N+ +  D  +G+  + L  + + +      W+ L+ 
Sbjct: 65  VEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 104

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 12/108 (11%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF--PDDGSPLTLH 573
           + +A+       +   + YV ++  ++K  T  + +   P W Q   F        LT+ 
Sbjct: 11  VKKAKFD---GAQEKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRLDLGLTVE 66

Query: 574 VRDHNALLASSSIGDCVVEYQRLP--PNQMADKWIPLQG---VRKGEI 616
           V +   L+  + +G   +  + +     +   +W+ L     +   EI
Sbjct: 67  VWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEI 113

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 57.7 bits (139), Expect = 4e-10
 Identities = 15/104 (14%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 524 AADLRGTSDPYVKVQYGDLKKRTKVIFKTLNP-QWHQTLEF-----PDDGSPLTLHVRDH 577
            ++LRG +D   KV +      ++V+    +   + +T  +      D    L + + ++
Sbjct: 30  VSELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNY 89

Query: 578 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 621
           + + ++  IG   +  Q++      +    L       I   ++
Sbjct: 90  SKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLS 133

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 19/120 (15%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRT-AHSPNHV-WNQKFELD-- 432
           +   + V +    +L      G+ D   K+ +      +R   +  +   +++ F     
Sbjct: 19  SHMALIVHLKTVSEL-----RGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVA 73

Query: 433 -EIGGGECLMVKCYNEE-IFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 490
             I   E L ++ +N   +F ++ +G+ R+ L+ +VE +  ++   L   N   ++  + 
Sbjct: 74  SSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLS 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 4e-09
 Identities = 86/586 (14%), Positives = 173/586 (29%), Gaps = 159/586 (27%)

Query: 205 GSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEE----LTRRTDARPGSDPRWDSMFNM 260
            S            +L    +++ +  FVE  L      L           P   SM   
Sbjct: 56  MSKDAVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQP---SM-MT 109

Query: 261 VLHEETGTVRFNLYECI-PGHV----KYDYLTSCEVKMKYVADDSTTFWAIGPDSGII-- 313
            ++ E     +N  +     +V     Y  L    ++++             P   ++  
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-------------PAKNVLID 156

Query: 314 -----AKH---AEFCGDE-VEMTVPFEG--VNSGEL-TVRLVLKEWQFSDGSHSLNNFHS 361
                 K     + C    V+  + F+   +N     +   VL+          L     
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM---------LQKLLY 207

Query: 362 GSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVK-LQYGKIVQRTRTAHS 420
               + +  S+  S    +I+    E + L+ K K     PY   L    +V        
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-KSK-----PYENCL----LVLL------ 251

Query: 421 PNHVWNQK----FELDEIGGGEC-LMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWV 475
             +V N K    F L       C +++    +++  D    +   ++      S+    +
Sbjct: 252 --NVQNAKAWNAFNL------SCKILLTTRFKQVT-DFLSAATTTHI------SLDHHSM 296

Query: 476 PLEKVNTGELRLQIEATRVDD--NEGSRGQNIGSGNGWIELVIVEARDLVAADLR---GT 530
            L       L L+    R  D   E                 +     ++A  +R    T
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTT---------NPRRL----SIIAESIRDGLAT 343

Query: 531 SDPYVKVQYGDLKKRTKVIFKTLNP----QWHQTLE-FPDDGSPLTLHVRDHNALLASSS 585
            D +  V    L    +     L P    +    L  FP   + +   +    +L+    
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILL---SLIWFDV 399

Query: 586 IGDCVVEY-QRLPPNQMADKWIPLQGVRKGEIHVLITRKVPELDKRTSI----------- 633
           I   V+    +L    + +K      +    I  +      +L+   ++           
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTIS---IPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 634 ---DSDSSSTRA-----------HKISGQMKQMMVKFQSLIDDDN-----LEELSTAL-- 672
              DSD                 H  + +  + M  F+ +  D       +   STA   
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516

Query: 673 --SELETLEDSQ--EEYMVQLET--EQML--LLNKIKELGQEIINS 710
             S L TL+  +  + Y+   +   E+++  +L+ + ++ + +I S
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 4e-04
 Identities = 44/267 (16%), Positives = 74/267 (27%), Gaps = 77/267 (28%)

Query: 25  KHRKPRLIEKIELQEFSLGSTSPC--LGLHGTRWSSSG----------DQRVMQLGFD-- 70
           K+   RL   ++L++ +L    P   + + G     SG            +V Q   D  
Sbjct: 128 KYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGV--LGSGKTWVALDVCLSYKV-QCKMDFK 183

Query: 71  --WDANDISI-------LLLAKLAKPLLGTAKIVINSLHIKGDLLVMPILEGKAVLYSFV 121
             W    +++        +L  L K LL        S       + + I   +A L   +
Sbjct: 184 IFW----LNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 122 SIP----------DV---RIGVAFGSGGSQSLPATELPGVSNWLARLINETLVKTLVEPR 168
                        +V   +   AF     + L  T    V++    L   T     ++  
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTD---FLSAATTTHISLDHH 294

Query: 169 RRCYSLP-AVDLRKKAVGGIVYVRVISASKLSRSSLRGSP-------------SRRQQNY 214
               +      L  K +             L R  L  +P                  N+
Sbjct: 295 SMTLTPDEVKSLLLKYLD-------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 215 SADSSLEEHYEDKDLTTFVEIELEELT 241
                  +H     LTT +E  L  L 
Sbjct: 348 -------KHVNCDKLTTIIESSLNVLE 367

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGE 438
             + V V + K    ++K    + YV L+   +   T         W Q F  +      
Sbjct: 14  SLLCVGVKKAKFDGAQEKF---NTYVTLKVQNVESTTIAVRGSQPSWEQDFMFEINRLDL 70

Query: 439 CLMVKCYNEEIFGDENMGSARVNLEGLV--EGSVRDIWVPLEK 479
            L V+ +N+ +  D  +G+  + L  +          W+ L+ 
Sbjct: 71  GLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 113

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 23/170 (13%), Positives = 56/170 (32%), Gaps = 27/170 (15%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF--PDDGSPLTLH 573
           + +A+   A +     + YV ++  +++  T  + +   P W Q   F        LT+ 
Sbjct: 20  VKKAKFDGAQEK---FNTYVTLKVQNVESTTIAV-RGSQPSWEQDFMFEINRLDLGLTVE 75

Query: 574 VRDHNALLASSSIGDCVVEYQRLPP--NQMADKWIPLQGVRKGEIHVLITRKVPELDKRT 631
           V +   L+  + +G   +  + +     +   +W+ L                 +     
Sbjct: 76  VWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD---------------SQAIMAD 119

Query: 632 SIDSDSSSTRAHKISGQMKQMMVKFQSLIDDDNLEELSTALSELETLEDS 681
           S    +     H+I   +     +    I ++     +  L +L    +S
Sbjct: 120 SEICGTKDPTFHRI---LLDAHFELPLDIPEEEARYWAKKLEQLNAKLNS 166

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 15/145 (10%)

Query: 376 RTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ-----YGKIVQRTRTAHSPNHVWNQKFE 430
           R    + + ++E ++L PK        Y +L      Y +   + R+A      W + FE
Sbjct: 8   RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFE 62

Query: 431 LDEIGGGECLMVKCYNEEIFG-----DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGEL 485
            + +     L +  Y +            +G   V +  L      + W P+        
Sbjct: 63  FNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGG 122

Query: 486 RLQIEATRVDDNEGSRGQNIGSGNG 510
              + +     + G  G     G  
Sbjct: 123 SGGMGSGGGGGSGGGSGGKGKGGCP 147

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 48.4 bits (114), Expect = 7e-06
 Identities = 25/221 (11%), Positives = 59/221 (26%), Gaps = 23/221 (10%)

Query: 511 WIELVIVEARDLVAADLRGTSDPYVKVQY-GDLKKRTKVIFKTL---NPQWHQTLEFPDD 566
            ++L I+EAR+L           Y ++     L  RT    ++       W +  EF + 
Sbjct: 12  VLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66

Query: 567 GSPLTL------HVRDHNALLASSSIGDCVVEYQRLPPNQMADKWI----PLQGVRKGEI 616
            +   L                +  +G   V    L      ++W     P      G +
Sbjct: 67  PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGM 126

Query: 617 HVLITRKVPELDKRTSIDSDSSSTRAHKISGQMKQMMVKFQSLID--DDNLEELSTALSE 674
                                +     +        M  ++   +   ++   L   L  
Sbjct: 127 GSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNHYRMLCAVLEP 186

Query: 675 LETLEDSQE--EYMVQLETEQMLLLNKIKELGQEIINSSPS 713
              ++  +E    +V +        + + ++    ++    
Sbjct: 187 ALNVKGKEEVASALVHILQSTGKAKDFLSDMAMSEVDRFME 227

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 506 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP- 564
            SG G + + ++EA +L A    G S+PY ++  G     T+ I  TLNP+W+   +F  
Sbjct: 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFI 442

Query: 565 --DDGSPLTLHVRDHNALLASSSIGDCVVEYQRL----PPNQMADKWIPLQGVRKGEIHV 618
                  L L + D +       +G   +   ++           + + L  V  GE+ V
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWV 502

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	726
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.98
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.97
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.96
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.83
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.83
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.82
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.82
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.81
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.81
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.81
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.81
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.81
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.81
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.81
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.81
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.8
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.79
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.79
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.79
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.79
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.79
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.79
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.78
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.78
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.78
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.78
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.78
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.77
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.77
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.77
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.77
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.77
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.76
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.76
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.75
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.75
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.75
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.73
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.73
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.73
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.73
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.72
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.72
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.7
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.69
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.66
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.66
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.66
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.65
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.65
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.65
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.65
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.65
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.64
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.64
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.64
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.63
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.63
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.63
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.62
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.62
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.61
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.6
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.59
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.59
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.59
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.59
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.58
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.58
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.58
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.57
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.57
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.56
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.55
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.53
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.52
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.49
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.49
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.47
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.47
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.43
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.35
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.31
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.26
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.22
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.21
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.09
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.02
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.02
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.99
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.91
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.86
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.73
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.7
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.69
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.69
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.59
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	93.44
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	89.25
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	85.25
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	82.2
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	81.67
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	80.39

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=7.5e-33  Score=290.03  Aligned_cols=219  Identities=26%  Similarity=0.452  Sum_probs=193.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg---~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  450 (726)
                      +.|.|+|++|++|+.++..|.+||||+++++   ...++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.. 
T Consensus        19 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~   98 (284)
T 2r83_A           19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS   98 (284)
T ss_dssp             TEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSS
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCC
Confidence            4899999999999999999999999999994   458899999 999999999999997642   57899999999988 


Q ss_pred             CCcceEEEEEEccccccCCeeeeeeecccc------ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcc
Q 004872          451 GDENMGSARVNLEGLVEGSVRDIWVPLEKV------NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVA  524 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~------~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~  524 (726)
                      ++++||++.++|.++..+.....|++|...      ..|+|.+++.|.              +..+.|.|.|++|++|+.
T Consensus        99 ~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~--------------p~~~~l~v~v~~a~~L~~  164 (284)
T 2r83_A           99 KHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYV--------------PTAGKLTVVILEAKNLKK  164 (284)
T ss_dssp             CCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCC
T ss_pred             CCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEec--------------CcCCceEEEEEEeECCCC
Confidence            799999999999999887788899999753      359999999987              567899999999999999


Q ss_pred             cccCCCCccEEEEEEC--C---eEEEeEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEcc
Q 004872          525 ADLRGTSDPYVKVQYG--D---LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQ  594 (726)
Q Consensus       525 ~d~~g~~DPyv~v~~~--~---~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~  594 (726)
                      .+..|.+||||++++.  +   .+++|+++++|+||+|||+|.|.+.     ...|.|+|||+|.+++|++||++.+++.
T Consensus       165 ~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~  244 (284)
T 2r83_A          165 MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN  244 (284)
T ss_dssp             CSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETT
T ss_pred             cCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCC
Confidence            9999999999999984  2   4679999999999999999999985     2469999999999999999999999997


Q ss_pred             cc------------CCCCceeeEEecCCC
Q 004872          595 RL------------PPNQMADKWIPLQGV  611 (726)
Q Consensus       595 ~l------------~~~~~~~~w~~L~~~  611 (726)
                      .+            .++....+||+|.+.
T Consensus       245 ~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          245 STGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             CCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             CCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            53            345677899999763

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.98  E-value=3.4e-32  Score=286.56  Aligned_cols=219  Identities=27%  Similarity=0.432  Sum_probs=189.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  450 (726)
                      +.|.|+|++|++|+.+|..|.+||||++++   +++.++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.. 
T Consensus        20 ~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~   99 (296)
T 1dqv_A           20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS   99 (296)
T ss_dssp             CEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSS
T ss_pred             CEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCC
Confidence            389999999999999999999999999999   5778999999 999999999999997543   45899999999988 


Q ss_pred             CCcceEEEEEE-cccccc-CCeeeeeeecccc-----ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCc
Q 004872          451 GDENMGSARVN-LEGLVE-GSVRDIWVPLEKV-----NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLV  523 (726)
Q Consensus       451 ~d~~iG~~~i~-L~~l~~-~~~~~~w~~L~~~-----~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~  523 (726)
                      ++++||++.++ +.++.. ......|++|...     ..|+|.+++.|.              +..|.|+|+|++|++|+
T Consensus       100 ~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~--------------~~~~~l~v~v~~a~~L~  165 (296)
T 1dqv_A          100 RHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYL--------------PTAGLLTVTIIKASNLK  165 (296)
T ss_dssp             CCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEE--------------TTTTEEEEEEEEEESCC
T ss_pred             CCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEec--------------cccceeEEEEEEeecCC
Confidence            89999999995 555543 2345689999753     359999999987              55799999999999999


Q ss_pred             ccccCCCCccEEEEEEC--C---eEEEeEeeeCCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEc
Q 004872          524 AADLRGTSDPYVKVQYG--D---LKKRTKVIFKTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEY  593 (726)
Q Consensus       524 ~~d~~g~~DPyv~v~~~--~---~~~kT~v~~~t~nP~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l  593 (726)
                      ++|..|.+||||++++.  +   .+++|+++++++||+|||+|.|.+.     ...|.|+|||+|.+++|++||++.+++
T Consensus       166 ~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l  245 (296)
T 1dqv_A          166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGP  245 (296)
T ss_dssp             CCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSS
T ss_pred             ccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECC
Confidence            99999999999999995  2   5789999999999999999999985     347999999999999999999999999


Q ss_pred             cccC-------------CCCceeeEEecCCC
Q 004872          594 QRLP-------------PNQMADKWIPLQGV  611 (726)
Q Consensus       594 ~~l~-------------~~~~~~~w~~L~~~  611 (726)
                      ..+.             .+.+..+|++|.+.
T Consensus       246 ~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~  276 (296)
T 1dqv_A          246 EAADPHGREHWAEMLANPRKPVEHWHQLVEE  276 (296)
T ss_dssp             CTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             ccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence            8653             34567788888753

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.97  E-value=1.8e-29  Score=264.37  Aligned_cols=230  Identities=19%  Similarity=0.244  Sum_probs=180.3

Q ss_pred             ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc----cEEeeeecCCCCCCccccee
Q 004872          183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDARPGSDPRWDSMF  258 (726)
Q Consensus       183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g----~~~rTt~i~~t~nP~WnEtf  258 (726)
                      ...|.|.|+|++|++|+..|..|.+                      ||||+|+++    ...+|+++++++||+|||+|
T Consensus        16 ~~~~~L~v~v~~a~~L~~~d~~~~~----------------------dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f   73 (284)
T 2r83_A           16 FQNNQLLVGIIQAAELPALDMGGTS----------------------DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF   73 (284)
T ss_dssp             TTTTEEEEEEEEEECCCCCSSSSSC----------------------CEEEEEEEETCTTSCEECCCCCSCSSCEEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCC----------------------CeEEEEEEEcCCCceEeCCcccCCCCCeeCceE
Confidence            3569999999999999998876655                      999999995    35778889999999999999


Q ss_pred             EEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEeceeccCCCcceeecCCCCccccccccccCceeeeeeecCCccc
Q 004872          259 NMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVNS  335 (726)
Q Consensus       259 ~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  335 (726)
                      .|.+...   .+.|.|+|||+|.. .++++||++.++|.++.....           ...|+.+.....     ......
T Consensus        74 ~f~v~~~~~~~~~l~~~V~d~d~~-~~~~~lG~~~i~l~~l~~~~~-----------~~~w~~L~~~~~-----~~~~~~  136 (284)
T 2r83_A           74 TFKVPYSELAGKTLVMAVYDFDRF-SKHDIIGEFKVPMNTVDFGHV-----------TEEWRDLQSAEK-----EEQEKL  136 (284)
T ss_dssp             EECCCGGGCTTCEEEEEEEECCSS-SCCCEEEEEEEEGGGCCCSSC-----------EEEEEECBCCSS-----CCCCCC
T ss_pred             EEEechHHhCcCEEEEEEEECCCC-CCCceeEEEEEcchhcccCCc-----------ceeEEEeecccc-----cccccc
Confidence            9998643   57999999999986 789999999999999874321           223332211100     011235


Q ss_pred             cEEEEEEEeeeeecCCCCCCCCCccCCCCcccccCCccccCCccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---
Q 004872          336 GELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---  410 (726)
Q Consensus       336 G~l~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~---  410 (726)
                      |++.+.+.+.                         |     ..+.|.|+|++|++|+.++.+|.+||||++++.  +   
T Consensus       137 G~i~l~l~~~-------------------------p-----~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~  186 (284)
T 2r83_A          137 GDICFSLRYV-------------------------P-----TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRL  186 (284)
T ss_dssp             CEEEEEEEEE-------------------------T-----TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEE
T ss_pred             ccEEEEEEec-------------------------C-----cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEe
Confidence            7877665321                         0     123899999999999999999999999999992  2   


Q ss_pred             eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-CCcceEEEEEEccccc------------cCCeeee
Q 004872          411 IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVNLEGLV------------EGSVRDI  473 (726)
Q Consensus       411 ~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~d~~iG~~~i~L~~l~------------~~~~~~~  473 (726)
                      .+++|+++ ++.||.|||.|.|.+...   ...|.|+|||++.. ++++||++.+++..+.            .+....+
T Consensus       187 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~  266 (284)
T 2r83_A          187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQ  266 (284)
T ss_dssp             EEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEE
T ss_pred             eeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchhe
Confidence            47899999 999999999999997654   45799999999988 8999999999998632            1235678


Q ss_pred             eeeccccc
Q 004872          474 WVPLEKVN  481 (726)
Q Consensus       474 w~~L~~~~  481 (726)
                      |++|.+..
T Consensus       267 W~~L~~~~  274 (284)
T 2r83_A          267 WHTLQVEE  274 (284)
T ss_dssp             EEECBCHH
T ss_pred             eeecCCcc
Confidence            99998754

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.96  E-value=1.2e-28  Score=259.31  Aligned_cols=228  Identities=19%  Similarity=0.251  Sum_probs=175.1

Q ss_pred             ccccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE---c-cEEeeeecCCCCCCccccee
Q 004872          183 AVGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL---E-ELTRRTDARPGSDPRWDSMF  258 (726)
Q Consensus       183 ~~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~---g-~~~rTt~i~~t~nP~WnEtf  258 (726)
                      ...|.|.|+|++|++|+..|..|.+                      ||||+|++   + ...+|+++++++||+|||+|
T Consensus        17 ~~~~~L~v~v~~a~~L~~~d~~g~~----------------------dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f   74 (296)
T 1dqv_A           17 YGSDQLVVRILQALDLPAKDSNGFS----------------------DPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETF   74 (296)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCC----------------------CEEEEEECTTSTTSCEECCCCCSCSSCEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCc----------------------CeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEE
Confidence            3569999999999999999877755                      99999999   3 46788899999999999999


Q ss_pred             EEEEecC---CceEEEEEEEeCCCCCCcceeEEEEEe-ceeccCCCcceeecCCCCccccccccccCceeeeeeecCCcc
Q 004872          259 NMVLHEE---TGTVRFNLYECIPGHVKYDYLTSCEVK-MKYVADDSTTFWAIGPDSGIIAKHAEFCGDEVEMTVPFEGVN  334 (726)
Q Consensus       259 ~~~v~~~---~~~L~~~V~D~d~~~~~dd~lG~~~i~-L~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  334 (726)
                      .|.+...   ...|.|+|||+|.. .++++||++.++ +.++.+...          ....|+.+...      .-....
T Consensus        75 ~f~v~~~~l~~~~L~~~V~d~d~~-~~~~~iG~~~i~~l~~~~~~~~----------~~~~w~~L~~~------~~~~~~  137 (296)
T 1dqv_A           75 QFSVPLAELAQRKLHFSVYDFDRF-SRHDLIGQVVLDNLLELAEQPP----------DRPLWRDILEG------GSEKAD  137 (296)
T ss_dssp             EEECCGGGGSSCCCEEEEEECCSS-SCCCEEEEEECCCTTGGGSSCS----------SCCCCEECBCC------SSCCSC
T ss_pred             EEEecHHHhcCCEEEEEEEEcCCC-CCCceEEEEEeccccccccCCc----------cceeeeccccc------cccccc
Confidence            9998543   45899999999986 789999999996 444432110          01123222110      001123


Q ss_pred             ccEEEEEEEeeeeecCCCCCCCCCccCCCCcccccCCccccCCccEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C--
Q 004872          335 SGELTVRLVLKEWQFSDGSHSLNNFHSGSQQSLSGSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K--  410 (726)
Q Consensus       335 ~G~l~~~l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~--  410 (726)
                      .|++.+.+.+.+                              ..+.|.|+|++|++|..++..|.+||||++++.  +  
T Consensus       138 ~G~i~vsl~y~~------------------------------~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~  187 (296)
T 1dqv_A          138 LGELNFSLCYLP------------------------------TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRR  187 (296)
T ss_dssp             CCEEEEEEEEET------------------------------TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCT
T ss_pred             cceEEEEEEecc------------------------------ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcC
Confidence            588877654321                              124899999999999999999999999999994  2  


Q ss_pred             -eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-CCcceEEEEEEcccccc-------------CCee
Q 004872          411 -IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDENMGSARVNLEGLVE-------------GSVR  471 (726)
Q Consensus       411 -~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~d~~iG~~~i~L~~l~~-------------~~~~  471 (726)
                       .++||+++ ++.||.|||.|.|.+...   ...|.|+|||++.. ++++||.+.+++..+..             +...
T Consensus       188 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~  267 (296)
T 1dqv_A          188 LKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPV  267 (296)
T ss_dssp             TSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCS
T ss_pred             ccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCce
Confidence             57899999 999999999999987654   35799999999988 89999999999987642             2234


Q ss_pred             eeeeeccc
Q 004872          472 DIWVPLEK  479 (726)
Q Consensus       472 ~~w~~L~~  479 (726)
                      .+|++|.+
T Consensus       268 ~~w~~L~~  275 (296)
T 1dqv_A          268 EHWHQLVE  275 (296)
T ss_dssp             CSCCCCBB
T ss_pred             eEeeeccC
Confidence            56777765

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=177.06  Aligned_cols=115  Identities=24%  Similarity=0.388  Sum_probs=103.2

Q ss_pred             CCCceEEEEEEEEeecCccccc----------CCCCccEEEEEECCeE-EEeEeeeCCCCCeeeeEEEEecC-CCeEEEE
Q 004872          506 GSGNGWIELVIVEARDLVAADL----------RGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD-GSPLTLH  573 (726)
Q Consensus       506 ~~~~g~L~v~v~~a~~L~~~d~----------~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~  573 (726)
                      ....|.|+|+|++|++|+++|.          .|.+||||++.+++++ .+|+++++|+||+|||+|.|.+. ...|.|+
T Consensus        25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~~~L~~~  104 (157)
T 2fk9_A           25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDGGHLELA  104 (157)
T ss_dssp             CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEE
T ss_pred             ccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCCCEEEEE
Confidence            3667999999999999998883          3679999999998865 69999999999999999999985 5789999


Q ss_pred             EEECCCCCCCCeeEEEEEEccccCCC----CceeeEEecCCCCCeEEEEEEEE
Q 004872          574 VRDHNALLASSSIGDCVVEYQRLPPN----QMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       574 V~d~d~~~~d~~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                      |||+|.+++|++||++.|+|.++..+    ...+.|++|++  .|+|+++++|
T Consensus       105 V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~  155 (157)
T 2fk9_A          105 VFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITL  155 (157)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEE
T ss_pred             EEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEE
Confidence            99999999999999999999998643    67899999975  8999999987

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1e-19  Score=169.05  Aligned_cols=119  Identities=27%  Similarity=0.413  Sum_probs=107.2

Q ss_pred             CCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC------CCeEEEEEEECCCC
Q 004872          507 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD------GSPLTLHVRDHNAL  580 (726)
Q Consensus       507 ~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~------~~~l~i~V~d~d~~  580 (726)
                      ...|.|+|+|++|++|+..+. |.+||||++++++++++|+++++++||+|||+|.|.+.      ...|.|+|||+|.+
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~   82 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI   82 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCS
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCC
Confidence            456899999999999999998 99999999999999999999999999999999999983      47899999999999


Q ss_pred             CCCCeeEEEEEEccccCCCCceeeEEe---cCCC----CCeEEEEEEEEEecCc
Q 004872          581 LASSSIGDCVVEYQRLPPNQMADKWIP---LQGV----RKGEIHVLITRKVPEL  627 (726)
Q Consensus       581 ~~d~~lG~~~i~l~~l~~~~~~~~w~~---L~~~----~~G~i~l~l~~~~p~~  627 (726)
                      ++|++||++.++|.++..+...+.|++   |.+.    ..|+|+++++| .|.+
T Consensus        83 ~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~-~p~~  135 (140)
T 2dmh_A           83 GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGY-DPPS  135 (140)
T ss_dssp             SSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEE-CCCB
T ss_pred             CCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEE-ECCC
Confidence            999999999999999988888899988   6442    34999999999 5543

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.82  E-value=8.2e-20  Score=172.38  Aligned_cols=115  Identities=10%  Similarity=0.151  Sum_probs=105.0

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC------eEEEeEeeeCCCC
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLN  554 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~n  554 (726)
                      ..|+|.+++.|.              +..+.|+|+|++|+||+++|.+|.+||||++++.+      .++||+++++|+|
T Consensus        28 ~~G~l~~sl~y~--------------~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tln   93 (155)
T 2z0u_A           28 GATRIQIALKYD--------------EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDT   93 (155)
T ss_dssp             CCEEEEEEEEEE--------------TTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSS
T ss_pred             CcEEEEEEEEEc--------------CCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCC
Confidence            469999999988              56799999999999999999999999999999964      2789999999999


Q ss_pred             CeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccC-CCCceeeEEecC
Q 004872          555 PQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLP-PNQMADKWIPLQ  609 (726)
Q Consensus       555 P~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~-~~~~~~~w~~L~  609 (726)
                      |+|||+|.|.+.     ...|.|+|||+|.+++|++||++.++|.++. .+.....||+|.
T Consensus        94 P~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A           94 LVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             EEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             CccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            999999999985     4689999999999999999999999999995 467789999985

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.82  E-value=6.2e-20  Score=168.97  Aligned_cols=118  Identities=25%  Similarity=0.436  Sum_probs=107.8

Q ss_pred             CCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCC
Q 004872          503 QNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL  580 (726)
Q Consensus       503 ~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~  580 (726)
                      ..+....|.|+|+|++|++|++.+..|.+||||++++++++++|+++++++||+|||+|.|.+.  ...|.|+|||+|.+
T Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~   85 (133)
T 2ep6_A            6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD   85 (133)
T ss_dssp             CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred             ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence            4567889999999999999999999999999999999999999999999999999999999985  57899999999999


Q ss_pred             CCCCeeEEEEEEccccCCCCceeeEEecCC-----CCCeEEEEEEEE
Q 004872          581 LASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITR  622 (726)
Q Consensus       581 ~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l~~  622 (726)
                      ++|++||++.+++.++..+.  ..|++|..     ...|+|+++++|
T Consensus        86 ~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~  130 (133)
T 2ep6_A           86 KPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDL  130 (133)
T ss_dssp             EEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred             CCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEE
Confidence            99999999999999997654  58999963     356999999998

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.81  E-value=1.1e-19  Score=165.54  Aligned_cols=113  Identities=20%  Similarity=0.362  Sum_probs=102.3

Q ss_pred             ceEEEEEEEEeecCcc---cccCCCCccEEEEEECC---eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCC
Q 004872          509 NGWIELVIVEARDLVA---ADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNA  579 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~---~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~  579 (726)
                      .|.|+|+|++|++|++   .+..|.+||||++++++   .+++|+++++++||+|||+|.|.+.   ...|.|+|||+|.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            5899999999999998   46779999999999985   7889999999999999999999983   5789999999998


Q ss_pred             CCCCCeeEEEEEEccccCCCCceeeEEecCCCCCeEEEEEEEE
Q 004872          580 LLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       580 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                      ++ |++||++.++|..+..+.....|++|.+...|+|+++++-
T Consensus        82 ~~-~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~  123 (126)
T 1rlw_A           82 VM-DETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV  123 (126)
T ss_dssp             SC-CEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEEC
T ss_pred             CC-CceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEe
Confidence            75 8999999999999999989999999998777888888764

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.81  E-value=5.8e-20  Score=169.82  Aligned_cols=121  Identities=21%  Similarity=0.365  Sum_probs=108.6

Q ss_pred             CCCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeee-CCCCCeeeeEEEEecC--CCeEEEEEEECCCCCC
Q 004872          506 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLA  582 (726)
Q Consensus       506 ~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~-~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~  582 (726)
                      ..+.|.|+|+|++|++|++.+..|.+||||++++++++++|++++ +++||+|||+|.|.+.  ...|.|+|||++.+++
T Consensus         6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~   85 (136)
T 1wfj_A            6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTE   85 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTT
T ss_pred             CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCC
Confidence            457799999999999999999999999999999999999999998 8999999999999985  5789999999999999


Q ss_pred             CCeeEEEEEEcccc-CCCCceeeEEecC--CCCCeEEEEEEEEEecCc
Q 004872          583 SSSIGDCVVEYQRL-PPNQMADKWIPLQ--GVRKGEIHVLITRKVPEL  627 (726)
Q Consensus       583 d~~lG~~~i~l~~l-~~~~~~~~w~~L~--~~~~G~i~l~l~~~~p~~  627 (726)
                      |++||++.++|.++ ..+.....|++|.  +...|+|+++++| .|..
T Consensus        86 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~-~p~~  132 (136)
T 1wfj_A           86 DDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSF-KPSG  132 (136)
T ss_dssp             TCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEE-EECC
T ss_pred             CceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEE-EeCC
Confidence            99999999999998 4455678999995  3456999999999 6654

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.81  E-value=3.2e-19  Score=168.16  Aligned_cols=117  Identities=32%  Similarity=0.464  Sum_probs=107.6

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEE---CCeEEEeEeeeCCCCCee
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY---GDLKKRTKVIFKTLNPQW  557 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~v~~~t~nP~w  557 (726)
                      ..|+|.+++.|.              +..+.|+|+|++|++|+..+..|.+||||++++   +..+++|+++++++||+|
T Consensus        27 ~~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w   92 (152)
T 1rsy_A           27 KLGKLQYSLDYD--------------FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVF   92 (152)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEE
T ss_pred             CceEEEEEEEEe--------------CCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcC
Confidence            469999999998              567999999999999999999999999999999   346889999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872          558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  611 (726)
Q Consensus       558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  611 (726)
                      ||+|.|.+.     ...|.|+|||+|.+++|++||++.++|.++..+...+.|++|.+.
T Consensus        93 ne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A           93 NEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             EEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             cccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            999999984     578999999999999999999999999999888889999999763

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.8e-19  Score=167.55  Aligned_cols=118  Identities=30%  Similarity=0.455  Sum_probs=107.0

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC---CeEEEeEeeeCCCCCee
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQW  557 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~w  557 (726)
                      ..|+|.+++.|.              +..+.|+|+|++|++|+..+..|.+||||++++.   ..+++|+++++++||+|
T Consensus        11 ~~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~w   76 (141)
T 2d8k_A           11 NLGRIQFSVGYN--------------FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHW   76 (141)
T ss_dssp             CCCEEEEEEEEC--------------SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCC
T ss_pred             eeeEEEEEEEEe--------------CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCcc
Confidence            369999999987              5679999999999999999999999999999994   36889999999999999


Q ss_pred             eeEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC
Q 004872          558 HQTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR  612 (726)
Q Consensus       558 ne~~~f~v------~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  612 (726)
                      ||+|.|.+      ....|.|+|||+|.+++|++||++.++|..+..+.....|++|.+..
T Consensus        77 ne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  137 (141)
T 2d8k_A           77 NETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG  137 (141)
T ss_dssp             CEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred             ccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence            99999985      25789999999999999999999999999998888899999997543

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.81  E-value=2.2e-19  Score=169.47  Aligned_cols=119  Identities=29%  Similarity=0.410  Sum_probs=98.7

Q ss_pred             CCCceEEEEEEEEeecCcccccCCCCccEEEEEECC------eEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEEC
Q 004872          506 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDH  577 (726)
Q Consensus       506 ~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~  577 (726)
                      ....+.|+|+|++|++|+..+..|.+||||++++++      .+++|+++++++||+|||+|.|.+.  ...|.|+|||+
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~   95 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDE   95 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEEC
T ss_pred             CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEEC
Confidence            467799999999999999999999999999999963      5789999999999999999999985  56899999999


Q ss_pred             CCCCCCCeeEEEEEEccccCCCCce------eeEEecCC-----CCCeEEEEEEEEEec
Q 004872          578 NALLASSSIGDCVVEYQRLPPNQMA------DKWIPLQG-----VRKGEIHVLITRKVP  625 (726)
Q Consensus       578 d~~~~d~~lG~~~i~l~~l~~~~~~------~~w~~L~~-----~~~G~i~l~l~~~~p  625 (726)
                      |.+++|++||++.++|.++..+...      .+|++|..     ...|+|+++++| +|
T Consensus        96 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~-~P  153 (153)
T 3b7y_A           96 NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTY-LP  153 (153)
T ss_dssp             CSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEE-CC
T ss_pred             CCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEE-eC
Confidence            9999999999999999999765432      59999964     346999999998 54

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.81  E-value=2e-19  Score=164.51  Aligned_cols=113  Identities=26%  Similarity=0.466  Sum_probs=98.1

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEE-----CCeEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP~  556 (726)
                      .|+|.++++|.              +..+.|+|+|++|++|++.+..|.+||||++++     +..+++|+++++|+||+
T Consensus         4 ~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~   69 (129)
T 2bwq_A            4 SGQLSIKLWFD--------------KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK   69 (129)
T ss_dssp             CCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCE
T ss_pred             eEEEEEEEEEc--------------cCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCc
Confidence            59999999998              567999999999999999999999999999999     34688999999999999


Q ss_pred             eeeEEEEec-C-----CCeEEEEEEECCCCCC--CCeeEEEEEEccccCCCCceeeEEecC
Q 004872          557 WHQTLEFPD-D-----GSPLTLHVRDHNALLA--SSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       557 wne~~~f~v-~-----~~~l~i~V~d~d~~~~--d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      |||+|.|.+ .     ...|.|+|||+|.+++  |++||++.++|.++.... .++||+|+
T Consensus        70 wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           70 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             EEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             cccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            999999995 2     4789999999999987  999999999999987654 88999985

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.81  E-value=4.6e-19  Score=166.28  Aligned_cols=114  Identities=32%  Similarity=0.533  Sum_probs=103.6

Q ss_pred             CceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCC-----
Q 004872          508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNAL-----  580 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~-----  580 (726)
                      ..|.|+|+|++|++|++.+..|.+||||++++++++++|+++++++||.|||+|.|.+.  ...|.|+|||+|..     
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~   94 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRV   94 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHH
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccc
Confidence            46999999999999999999999999999999999999999999999999999999984  57899999999986     


Q ss_pred             ------CCCCeeEEEEEEccccCCCCceeeEEecCC-----CCCeEEEEEEEEE
Q 004872          581 ------LASSSIGDCVVEYQRLPPNQMADKWIPLQG-----VRKGEIHVLITRK  623 (726)
Q Consensus       581 ------~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~-----~~~G~i~l~l~~~  623 (726)
                            ++|++||++.++|.++.  ...+.|++|..     ...|+|+++++|.
T Consensus        95 ~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           95 KQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             cccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                  78999999999999993  45789999973     3469999999983

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.81  E-value=4e-19  Score=165.69  Aligned_cols=116  Identities=32%  Similarity=0.468  Sum_probs=107.3

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEE---CCeEEEeEeeeCCCCCee
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY---GDLKKRTKVIFKTLNPQW  557 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~v~~~t~nP~w  557 (726)
                      ..|+|.++++|.              +..+.|+|+|++|++|+..+..+.+||||++++   +..+++|+++++++||+|
T Consensus        19 ~~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~w   84 (143)
T 3f04_A           19 KLGKLQYSLDYD--------------FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVF   84 (143)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEE
T ss_pred             CeEEEEEEEEEe--------------CCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcC
Confidence            469999999998              677999999999999999999999999999999   446889999999999999


Q ss_pred             eeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872          558 HQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  610 (726)
Q Consensus       558 ne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  610 (726)
                      ||+|.|.+.     ...|.|+|||+|.+++|++||++.++|.++..+...+.|++|+.
T Consensus        85 ne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A           85 NEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             EEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             cCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            999999974     47899999999999999999999999999998888999999974

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.80  E-value=1.6e-19  Score=169.37  Aligned_cols=117  Identities=22%  Similarity=0.363  Sum_probs=105.5

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccc-cCCCCccEEEEEEC-----CeEEEeEeeeCCCC
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYG-----DLKKRTKVIFKTLN  554 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~-----~~~~kT~v~~~t~n  554 (726)
                      ..|+|.++++|.              +..+.|+|+|++|++|+..+ ..|.+||||++++.     ..+++|+++++|+|
T Consensus         8 ~~G~l~~sl~y~--------------~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~n   73 (148)
T 3fdw_A            8 VTGRIAFSLKYE--------------QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVN   73 (148)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSS
T ss_pred             cceEEEEEEEEe--------------CCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCC
Confidence            469999999998              66799999999999999988 68999999999995     24789999999999


Q ss_pred             CeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872          555 PQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  611 (726)
Q Consensus       555 P~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  611 (726)
                      |+|||+|.|.+.     ...|.|+|||+|.+++|++||++.++|..+..+.....|++|.+.
T Consensus        74 P~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  135 (148)
T 3fdw_A           74 PLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK  135 (148)
T ss_dssp             CEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred             CcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence            999999999985     346999999999999999999999999999877778899999864

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.79  E-value=2.7e-19  Score=166.37  Aligned_cols=120  Identities=25%  Similarity=0.441  Sum_probs=106.4

Q ss_pred             cccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEE-----CCeEEEeEeeeCCCC
Q 004872          480 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLN  554 (726)
Q Consensus       480 ~~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~n  554 (726)
                      ...|+|.+++.|.              +..+.|+|+|++|++|+..+..|.+||||++++     ...+++|+++++|+|
T Consensus         5 ~~~G~i~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~n   70 (141)
T 1v27_A            5 SSGGQLSIKLWFD--------------KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLE   70 (141)
T ss_dssp             CCCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSS
T ss_pred             CcccEEEEEEEEe--------------CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCC
Confidence            3579999999998              566999999999999999999999999999999     346889999999999


Q ss_pred             CeeeeEEEEec-C-----CCeEEEEEEECCCCCC--CCeeEEEEEEccccCCCCceeeEEecCCCCCe
Q 004872          555 PQWHQTLEFPD-D-----GSPLTLHVRDHNALLA--SSSIGDCVVEYQRLPPNQMADKWIPLQGVRKG  614 (726)
Q Consensus       555 P~wne~~~f~v-~-----~~~l~i~V~d~d~~~~--d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G  614 (726)
                      |+|||+|.|.+ .     ...|.|+|||++.+++  |++||++.++|.++.... ...||+|.+...|
T Consensus        71 P~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g  137 (141)
T 1v27_A           71 PKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSG  137 (141)
T ss_dssp             CCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSC
T ss_pred             CccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcccccC
Confidence            99999999994 2     4789999999999987  999999999999987654 8899999875544

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.79  E-value=9.1e-19  Score=161.31  Aligned_cols=105  Identities=24%  Similarity=0.376  Sum_probs=93.8

Q ss_pred             CceEEEEEEEEeecCcccccCCCCccEEEEEE-----CCeEEEeEeeeCCCCCeeeeEEEEe-cC-----CCeEEEEEEE
Q 004872          508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQWHQTLEFP-DD-----GSPLTLHVRD  576 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP~wne~~~f~-v~-----~~~l~i~V~d  576 (726)
                      ..+.|+|+|++|++|+. +.+|.+||||++++     ...+++|+++++|+||+|||+|.|. +.     ...|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            35899999999999997 77899999999999     3467899999999999999999999 64     4799999999


Q ss_pred             CCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCCC
Q 004872          577 HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRK  613 (726)
Q Consensus       577 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~  613 (726)
                      +|.+++|++||++.++|.++..+.....|++|.+...
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  133 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATY  133 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC---
T ss_pred             CCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCccC
Confidence            9999999999999999999988888999999987543

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.79  E-value=5.3e-19  Score=166.87  Aligned_cols=119  Identities=24%  Similarity=0.369  Sum_probs=104.6

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-----CeEEEeEeeeCCCCC
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNP  555 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP  555 (726)
                      ..|++.++++|.              +..+.|+|+|++|++|++.+ .|.+||||++++.     ..+++|+++++|+||
T Consensus        12 ~~G~~~lsL~y~--------------~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP   76 (153)
T 3fbk_A           12 VQGAGQLRLSID--------------AQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDP   76 (153)
T ss_dssp             -CCCCEEEEEEE--------------ESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSC
T ss_pred             CCCEEEEEEEEE--------------CCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCC
Confidence            579999999998              56699999999999999998 6999999999993     357899999999999


Q ss_pred             eeeeEEEEecC----CCeEEEEEEECCCCCC-CCeeEEEEEEccccCC-CCceeeEEecCCCCCe
Q 004872          556 QWHQTLEFPDD----GSPLTLHVRDHNALLA-SSSIGDCVVEYQRLPP-NQMADKWIPLQGVRKG  614 (726)
Q Consensus       556 ~wne~~~f~v~----~~~l~i~V~d~d~~~~-d~~lG~~~i~l~~l~~-~~~~~~w~~L~~~~~G  614 (726)
                      +|||+|.|.+.    ...|.|+|||+|.+++ |++||++.++|.++.. +.....||+|.+...|
T Consensus        77 ~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g  141 (153)
T 3fbk_A           77 AFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG  141 (153)
T ss_dssp             EEEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred             ccccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence            99999999983    4679999999999887 9999999999999974 7788999999875544

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.79  E-value=8.6e-19  Score=169.46  Aligned_cols=120  Identities=28%  Similarity=0.395  Sum_probs=97.7

Q ss_pred             CCCceEEEEEEEEeecCcccccCCCCccEEEEEECC------eEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEEC
Q 004872          506 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDH  577 (726)
Q Consensus       506 ~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~  577 (726)
                      ....|.|+|+|++|++|+..+..|.+||||++++++      .+++|+++++++||+|||+|.|.+.  ...|.|+|||+
T Consensus         4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~   83 (176)
T 3m7f_B            4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDE   83 (176)
T ss_dssp             CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEEC
Confidence            356799999999999999999999999999999965      5789999999999999999999985  46899999999


Q ss_pred             CCCCCCCeeEEEEEEccccCCCCce------eeEEecCC-----CCCeEEEEEEEEEecC
Q 004872          578 NALLASSSIGDCVVEYQRLPPNQMA------DKWIPLQG-----VRKGEIHVLITRKVPE  626 (726)
Q Consensus       578 d~~~~d~~lG~~~i~l~~l~~~~~~------~~w~~L~~-----~~~G~i~l~l~~~~p~  626 (726)
                      +.+++|++||++.|+|..+..+...      .+||+|..     ...|+|+++++| .|.
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~-~p~  142 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTY-LPK  142 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEE-CC-
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEE-EeC
Confidence            9999999999999999999765433      28999974     246999999999 775

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.79  E-value=4e-19  Score=164.17  Aligned_cols=113  Identities=25%  Similarity=0.425  Sum_probs=100.5

Q ss_pred             CceEEEEEEEEeecCcccccCCC-----------CccEEEEEECCeE-EEeEeeeCCCCCeeeeEEEEecC-CCeEEEEE
Q 004872          508 GNGWIELVIVEARDLVAADLRGT-----------SDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHV  574 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d~~g~-----------~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V  574 (726)
                      ..|.|+|+|++|++|++.|..+.           +||||++.+++.+ .+|+++++|+||+|||+|.|.+. ...|.|+|
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~~~L~~~V   83 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCCCEEEEEE
Confidence            45899999999999998885444           9999999998865 69999999999999999999984 58899999


Q ss_pred             EECCCCCCCCeeEEEEEEccccCCCC--ceeeEEecCCCCCeEEEEEEEE
Q 004872          575 RDHNALLASSSIGDCVVEYQRLPPNQ--MADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       575 ~d~d~~~~d~~lG~~~i~l~~l~~~~--~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                      ||+|.+++|++||++.+++.++..+.  ..+.|++|+.  .|+|+++++|
T Consensus        84 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~i~l~l~~  131 (136)
T 1gmi_A           84 FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDL  131 (136)
T ss_dssp             EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEE
T ss_pred             EeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--CeEEEEEEEE
Confidence            99999999999999999999997643  4589999975  8999999998

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.79  E-value=1e-18  Score=161.90  Aligned_cols=115  Identities=18%  Similarity=0.256  Sum_probs=102.3

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC---C-eEEEeEeeeCCCCCe
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---D-LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~-~~~kT~v~~~t~nP~  556 (726)
                      ..|+|.+++.|.              ...+.|+|+|++|+   ++|..|.+||||++++.   + .+++|+++++|+||+
T Consensus        11 ~~G~l~~sl~y~--------------~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~   73 (138)
T 1wfm_A           11 QAPKLHYCLDYD--------------CQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTT   73 (138)
T ss_dssp             SCCEEEEEEEEE--------------TTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEE
T ss_pred             cceEEEEEEEEe--------------CCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCc
Confidence            369999999988              56799999999999   46788999999999993   2 367999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC
Q 004872          557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR  612 (726)
Q Consensus       557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  612 (726)
                      |||+|.|.+.     ...|.|+|||+|.+++|++||++.++|.++..+...+.|++|....
T Consensus        74 wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A           74 WEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             CSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             CCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence            9999999984     4689999999999999999999999999998777889999998643

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.78  E-value=1.2e-18  Score=162.20  Aligned_cols=116  Identities=28%  Similarity=0.404  Sum_probs=106.4

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCC
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNP  555 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  555 (726)
                      ..|+|.+++.|.              +..+.|+|+|++|++|++.+..|.+||||++++.+     .+++|+++++++||
T Consensus        14 ~~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP   79 (142)
T 2chd_A           14 TLGALEFSLLYD--------------QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNP   79 (142)
T ss_dssp             CCCEEEEEEEEE--------------GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSC
T ss_pred             ccceEEEEEEEe--------------CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCC
Confidence            369999999998              56799999999999999999999999999999965     68899999999999


Q ss_pred             eeeeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872          556 QWHQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  610 (726)
Q Consensus       556 ~wne~~~f~-v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  610 (726)
                      +|||+|.|. +.     ...|.|+|||++.+++|++||++.++|..+..+.....|++|+.
T Consensus        80 ~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A           80 VWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             cCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            999999998 54     37899999999999999999999999999998888899999864

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=1.4e-18  Score=161.85  Aligned_cols=116  Identities=26%  Similarity=0.417  Sum_probs=103.7

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCC
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNP  555 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  555 (726)
                      ..|+|.++++|.              +..+.|+|+|++|++|++.+..| +||||++++.+     .+++|+++++|+||
T Consensus         9 ~~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP   73 (142)
T 2dmg_A            9 PLGQIQLTIRHS--------------SQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNP   73 (142)
T ss_dssp             SSCEEEEEEEEE--------------TTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSC
T ss_pred             CcceEEEEEEEe--------------CCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCC
Confidence            369999999998              56799999999999999999999 99999999932     57899999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCC--CCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872          556 QWHQTLEFPDD-----GSPLTLHVRDHNALLA--SSSIGDCVVEYQRLPPNQMADKWIPLQGV  611 (726)
Q Consensus       556 ~wne~~~f~v~-----~~~l~i~V~d~d~~~~--d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  611 (726)
                      +|||+|.|.+.     ...|.|+|||+|.++.  |++||++.++|..+..+.....|++|.+.
T Consensus        74 ~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~  136 (142)
T 2dmg_A           74 VFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED  136 (142)
T ss_dssp             EEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred             CcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence            99999999985     3589999999998763  57999999999999877788999999764

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.78  E-value=3.3e-19  Score=166.01  Aligned_cols=116  Identities=33%  Similarity=0.514  Sum_probs=104.4

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECCe--------------EEEe
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL--------------KKRT  546 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~--------------~~kT  546 (726)
                      ..|+|.+++.|.                .+.|+|+|++|++|++++..|.+||||++++++.              +++|
T Consensus         5 ~~G~i~~~l~y~----------------~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT   68 (142)
T 1rh8_A            5 ITGEIQLQINYD----------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRT   68 (142)
T ss_dssp             CCCEEEEEEEEE----------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTT
T ss_pred             cceEEEEEEEEc----------------CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeec
Confidence            479999999986                3899999999999999999999999999999763              4789


Q ss_pred             EeeeCCCCCeeeeEEEEe-c-----CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC
Q 004872          547 KVIFKTLNPQWHQTLEFP-D-----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR  612 (726)
Q Consensus       547 ~v~~~t~nP~wne~~~f~-v-----~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~  612 (726)
                      +++++|+||+|||+|.|. +     ....|.|+|||+|.+++|++||++.++|.++..+.....||+|.+..
T Consensus        69 ~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           69 KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             TTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             cccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            999999999999999997 5     35799999999999999999999999999998777788999998643

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.78  E-value=4.9e-19  Score=166.30  Aligned_cols=118  Identities=28%  Similarity=0.478  Sum_probs=104.7

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-----CeEEEeEeeeCCCCC
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNP  555 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP  555 (726)
                      ..|+|.++++|.                .+.|+|+|++|++|+..+..|.+||||++++.     ..+++|+++++++||
T Consensus        18 ~~G~l~~~l~~~----------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP   81 (149)
T 1a25_A           18 RRGRIYIQAHID----------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNP   81 (149)
T ss_dssp             TTCEEEEEEEES----------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSC
T ss_pred             cceEEEEEEEec----------------CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCC
Confidence            469999999863                37899999999999999999999999999996     368899999999999


Q ss_pred             eeeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCCCeE
Q 004872          556 QWHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE  615 (726)
Q Consensus       556 ~wne~~~f~v~----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~  615 (726)
                      +|||+|.|.+.    ...|.|+|||+|.+++|++||++.++|.++..+ ..+.||+|.+...|+
T Consensus        82 ~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g~  144 (149)
T 1a25_A           82 EWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGE  144 (149)
T ss_dssp             EEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHT
T ss_pred             cCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCCc
Confidence            99999999985    358999999999999999999999999999766 578999998755554

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.5e-18  Score=162.58  Aligned_cols=117  Identities=24%  Similarity=0.278  Sum_probs=104.0

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCccc-cc------CCCCccEEEEEEC---CeEEEeEeee
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAA-DL------RGTSDPYVKVQYG---DLKKRTKVIF  550 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~-d~------~g~~DPyv~v~~~---~~~~kT~v~~  550 (726)
                      ..|+|.++++|.              +..+.|+|+|++|++|+.. +.      .|.+||||++++.   ..+++|++++
T Consensus        11 ~~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~   76 (147)
T 2enp_A           11 QLGMLHFSTQYD--------------LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKR   76 (147)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCC
T ss_pred             cceEEEEEEEEc--------------CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeeccc
Confidence            469999999998              6679999999999999984 43      3589999999995   3578999999


Q ss_pred             CCCCCeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872          551 KTLNPQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  611 (726)
Q Consensus       551 ~t~nP~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  611 (726)
                      +++||+|||+|.|.+.     ...|.|+|||+|.+++|++||++.++|.++........|++|.+.
T Consensus        77 ~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A           77 KTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             SCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             CCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            9999999999999985     368999999999999999999999999999877777899999864

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.77  E-value=4e-18  Score=161.90  Aligned_cols=117  Identities=28%  Similarity=0.479  Sum_probs=103.7

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCC
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNP  555 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  555 (726)
                      ..|+|.+++.|.              +..+.|+|+|++|+||+..+..|.+||||++++.+     .+++|+++++|+||
T Consensus        10 ~~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP   75 (159)
T 1tjx_A           10 KLGDICFSLRYV--------------PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNP   75 (159)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSC
T ss_pred             cCCeEEEEEEEc--------------CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCC
Confidence            469999999998              66799999999999999999999999999999952     46799999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEcccc------------CCCCceeeEEecCCC
Q 004872          556 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL------------PPNQMADKWIPLQGV  611 (726)
Q Consensus       556 ~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l------------~~~~~~~~w~~L~~~  611 (726)
                      +|||+|.|.+.     ...|.|+|||+|.+++|++||++.+++..+            .++....+||+|.+.
T Consensus        76 ~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~  148 (159)
T 1tjx_A           76 YYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (159)
T ss_dssp             EEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             cccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence            99999999985     357999999999999999999999999853            345678899999764

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.77  E-value=2.4e-18  Score=159.25  Aligned_cols=114  Identities=32%  Similarity=0.485  Sum_probs=100.4

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP~  556 (726)
                      .|+|.++++|.              +..+.|+|+|++|++|+..+..|.+||||++++.+     .+++|+++++++||+
T Consensus         2 ~G~l~~sl~y~--------------~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~   67 (138)
T 3n5a_A            2 RGELLLSLCYN--------------PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPI   67 (138)
T ss_dssp             CCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCE
T ss_pred             CcEEEEEEEEc--------------CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCc
Confidence            69999999998              66799999999999999999999999999999953     478999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccC------------CCCceeeEEecC
Q 004872          557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLP------------PNQMADKWIPLQ  609 (726)
Q Consensus       557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~------------~~~~~~~w~~L~  609 (726)
                      |||+|.|.+.     ...|.|+|||+|.+++|++||++.+++..+.            ++....+|++|.
T Consensus        68 wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~  137 (138)
T 3n5a_A           68 FNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLK  137 (138)
T ss_dssp             EEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             CcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCChHHHHHHHHHhCCCCeEEEEeecC
Confidence            9999999985     2579999999999999999999999998642            445667777764

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=4.2e-18  Score=157.74  Aligned_cols=117  Identities=24%  Similarity=0.272  Sum_probs=103.1

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccC-CCCccEEEEEECC---eEEEeEeeeCCCCCe
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLR-GTSDPYVKVQYGD---LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~-g~~DPyv~v~~~~---~~~kT~v~~~t~nP~  556 (726)
                      ..|+|.++++|.              +..+.|+|+|++|++|++.+.. |.+||||++++.+   .+++|+++++|+||+
T Consensus         7 ~~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~   72 (138)
T 1ugk_A            7 GLGTLFFSLEYN--------------FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPA   72 (138)
T ss_dssp             CCCEEEEEEEEE--------------GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCE
T ss_pred             ccEEEEEEEEEE--------------CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCc
Confidence            369999999998              5679999999999999999985 8999999999953   689999999999999


Q ss_pred             eeeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCC-ceeeEEecCCC
Q 004872          557 WHQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ-MADKWIPLQGV  611 (726)
Q Consensus       557 wne~~~f~-v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~-~~~~w~~L~~~  611 (726)
                      |||+|.|. +.     ...|.|+|||+|.+++|++||++.++|.++..+. ....|++|...
T Consensus        73 wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A           73 FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             EEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             EeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            99999995 53     3689999999999999999999999999997654 34567999754

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.77  E-value=2.5e-18  Score=157.97  Aligned_cols=115  Identities=19%  Similarity=0.298  Sum_probs=99.5

Q ss_pred             CceEEEEEEEEeecCcccccCCCCccEEEEEECC--eEEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCC--
Q 004872          508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD--LKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLA--  582 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~--  582 (726)
                      ....|+|+|++|++|++.|..|.+||||++++++  ++++|+++++|+||+|||+|.|.+. ...|.|+|||+|.+++  
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~l~~~v~d~d~~~~~~   82 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTDSITISVWNHKKIHKKQ   82 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTCCEEEEEEEGGGTTSST
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCCEEEEEEEECCCCCCCC
Confidence            4578999999999999999999999999999975  7899999999999999999999984 4569999999999876  


Q ss_pred             -CCeeEEEEEEcccc-CCCCceeeEEecCCC-------CCeEEEEEEEE
Q 004872          583 -SSSIGDCVVEYQRL-PPNQMADKWIPLQGV-------RKGEIHVLITR  622 (726)
Q Consensus       583 -d~~lG~~~i~l~~l-~~~~~~~~w~~L~~~-------~~G~i~l~l~~  622 (726)
                       |++||++.+++..+ .......+|++|...       ..|+|+++++.
T Consensus        83 ~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           83 GAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             TTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence             89999999999988 333344589999643       36999999975

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.76  E-value=6.7e-18  Score=161.55  Aligned_cols=116  Identities=24%  Similarity=0.407  Sum_probs=102.0

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCC
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNP  555 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  555 (726)
                      ..|+|.+++.|.              +..+.|+|+|++|++|+..+..|.+||||++++++     .+++|+++++|+||
T Consensus        22 ~~G~l~~~l~y~--------------~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP   87 (166)
T 2cm5_A           22 ERGKILVSLMYS--------------TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNP   87 (166)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSC
T ss_pred             ccceEEEEEEEE--------------CCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCC
Confidence            469999999998              56799999999999999999999999999999965     58899999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccC------------CCCceeeEEecCC
Q 004872          556 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLP------------PNQMADKWIPLQG  610 (726)
Q Consensus       556 ~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~------------~~~~~~~w~~L~~  610 (726)
                      +|||+|.|.+.     ...|.|+|||+|.+++|++||++.+++..+.            .+....+|+.|.+
T Consensus        88 ~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~  159 (166)
T 2cm5_A           88 EFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN  159 (166)
T ss_dssp             EEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC
T ss_pred             cccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCC
Confidence            99999999984     4589999999999999999999999998752            3445666776654

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.76  E-value=2.8e-18  Score=164.94  Aligned_cols=116  Identities=28%  Similarity=0.430  Sum_probs=102.8

Q ss_pred             cccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCccccc-CCCCccEEEEEECC-----eEEEeEeeeCCC
Q 004872          480 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADL-RGTSDPYVKVQYGD-----LKKRTKVIFKTL  553 (726)
Q Consensus       480 ~~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~-~g~~DPyv~v~~~~-----~~~kT~v~~~t~  553 (726)
                      ...|+|.+++.|.                .+.|.|+|++|++|+++|. .|.+||||++++.+     .+++|+++++|+
T Consensus        16 ~~~G~l~~~l~y~----------------~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~   79 (171)
T 2q3x_A           16 PAMGDIQIGMEDK----------------KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTL   79 (171)
T ss_dssp             -CCCEEEEEEEEE----------------TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCS
T ss_pred             CCccEEEEEEEEC----------------CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCC
Confidence            3469999999983                3899999999999999985 79999999999953     378999999999


Q ss_pred             CCeeeeEEEEecC--CCeEEEEEE-ECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872          554 NPQWHQTLEFPDD--GSPLTLHVR-DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  611 (726)
Q Consensus       554 nP~wne~~~f~v~--~~~l~i~V~-d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  611 (726)
                      ||+|||+|.|.+.  ...|.|+|| |+|.+++|++||++.++|.++..+...+.||+|.+.
T Consensus        80 nP~wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A           80 DPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             SCEEEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            9999999999984  578999999 999999999999999999999888889999999864

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.75  E-value=3.8e-18  Score=163.95  Aligned_cols=116  Identities=18%  Similarity=0.249  Sum_probs=99.4

Q ss_pred             CCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCCe
Q 004872          507 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSS  585 (726)
Q Consensus       507 ~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~d~~  585 (726)
                      ...+.|+|+|++|++|++.+..+.+||||+|++++++++|+++++|+||+|||+|.|.+. ...|.|+|||+|.+++|++
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~~~~L~~~V~D~d~~~~dd~  112 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVL  112 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECTTCEEEEEEEECCSSSCCEE
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCCCCEEEEEEEECCCCCCCce
Confidence            457899999999999994444455999999999999999999999999999999999985 6789999999999999999


Q ss_pred             eEEEEEEccccCCC-----CceeeEEecCCC-----CCeEEEEEEEE
Q 004872          586 IGDCVVEYQRLPPN-----QMADKWIPLQGV-----RKGEIHVLITR  622 (726)
Q Consensus       586 lG~~~i~l~~l~~~-----~~~~~w~~L~~~-----~~G~i~l~l~~  622 (726)
                      ||++.++|.++..+     .....|++|...     ..|+|.+++++
T Consensus       113 lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~  159 (173)
T 2nq3_A          113 LGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG  159 (173)
T ss_dssp             EEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred             EEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEee
Confidence            99999999988532     123679999643     36999999998

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.75  E-value=1e-17  Score=157.47  Aligned_cols=111  Identities=22%  Similarity=0.355  Sum_probs=98.0

Q ss_pred             cEEEEEEEEeecCCCCCC----------CCCCCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEe
Q 004872          379 RKINVTVVEGKDLMPKDK----------SGKCDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYN  446 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~----------~g~~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d  446 (726)
                      |.|.|+|++|++|+.+|.          .|.+||||++.++++ .+||+++ ++.||.|||+|.|.+.+ ...|.|+|||
T Consensus        29 g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~V~D  107 (157)
T 2fk9_A           29 GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELAVFH  107 (157)
T ss_dssp             EEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEEE
T ss_pred             cEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEEEEE
Confidence            589999999999998873          367999999999765 4799999 99999999999999764 4689999999


Q ss_pred             ecCC-CCcceEEEEEEccccccC----CeeeeeeeccccccceeEEEEEEE
Q 004872          447 EEIF-GDENMGSARVNLEGLVEG----SVRDIWVPLEKVNTGELRLQIEAT  492 (726)
Q Consensus       447 ~~~~-~d~~iG~~~i~L~~l~~~----~~~~~w~~L~~~~~G~I~l~~~~~  492 (726)
                      ++.. +|++||.+.+++.++..+    ...+.||+|.+  .|+|+++++|.
T Consensus       108 ~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~~  156 (157)
T 2fk9_A          108 ETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITLT  156 (157)
T ss_dssp             CCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred             CCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEEE
Confidence            9988 799999999999999865    57889999985  79999999874

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.75  E-value=1.3e-17  Score=157.29  Aligned_cols=101  Identities=29%  Similarity=0.342  Sum_probs=86.0

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEE--CCe---EEEeEeeeCCCCC
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY--GDL---KKRTKVIFKTLNP  555 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~---~~kT~v~~~t~nP  555 (726)
                      ..|+|.++++|.              +..+.|.|+|++|++|+..+..|.+||||++++  ++.   +++|+++++|+||
T Consensus        15 ~~G~l~~~l~y~--------------~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP   80 (153)
T 1w15_A           15 GRGELLVSLCYQ--------------STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNA   80 (153)
T ss_dssp             -CCEEEEEEEEE--------------TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSE
T ss_pred             cccEEEEEEEEc--------------CCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCC
Confidence            469999999998              567999999999999999999999999999999  433   6799999999999


Q ss_pred             eeeeEEEEecCC-----CeEEEEEEECCCCCCCCeeEEEEEEccc
Q 004872          556 QWHQTLEFPDDG-----SPLTLHVRDHNALLASSSIGDCVVEYQR  595 (726)
Q Consensus       556 ~wne~~~f~v~~-----~~l~i~V~d~d~~~~d~~lG~~~i~l~~  595 (726)
                      +|||+|.|.+..     ..|.|+|||+|.+++|++||++.+++..
T Consensus        81 ~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A           81 VFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             EEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred             eecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence            999999999852     5799999999999999999999999987

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.73  E-value=1.9e-17  Score=150.69  Aligned_cols=113  Identities=24%  Similarity=0.357  Sum_probs=101.0

Q ss_pred             cEEEEEEEEeecCCCC---CCCCCCCcEEEEEEC---CeEeecccc-CCCCCceeeEEEEEeeC-CceeEEEEEEeecCC
Q 004872          379 RKINVTVVEGKDLMPK---DKSGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIG-GGECLMVKCYNEEIF  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~---d~~g~~dpyv~v~lg---~~~~kT~~~-~t~nP~wne~f~f~v~~-~~~~l~i~V~d~~~~  450 (726)
                      +.|.|+|++|++|+.+   +..|.+||||+++++   ...+||+++ ++.||.|||.|.|.+.. ....|.|+|||++..
T Consensus         3 ~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~   82 (126)
T 1rlw_A            3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV   82 (126)
T ss_dssp             EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred             cEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCC
Confidence            4899999999999984   556899999999996   478999999 99999999999999854 467899999999987


Q ss_pred             CCcceEEEEEEccccccCCeeeeeeeccccccceeEEEEEE
Q 004872          451 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEA  491 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~~~~  491 (726)
                      ++++||++.++|.++..+.....|++|.+.+.|+|+++++.
T Consensus        83 ~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~  123 (126)
T 1rlw_A           83 MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV  123 (126)
T ss_dssp             CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEEC
T ss_pred             CCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEe
Confidence            88999999999999988888899999998778888888764

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=4.5e-17  Score=151.07  Aligned_cols=115  Identities=23%  Similarity=0.285  Sum_probs=103.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeecCC-CC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF-GD  452 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~~-~d  452 (726)
                      +.|.|+|++|++|+.++. |.+||||+++++++.+||+++ ++.||+|||.|.|.+..    ....|.|+|||++.. ++
T Consensus         7 g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~   85 (140)
T 2dmh_A            7 GMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQN   85 (140)
T ss_dssp             CEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSC
T ss_pred             cEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCC
Confidence            589999999999999988 999999999998889999999 99999999999999864    367899999999988 88


Q ss_pred             cceEEEEEEccccccCCeeeeeee---cccc----ccceeEEEEEEEEe
Q 004872          453 ENMGSARVNLEGLVEGSVRDIWVP---LEKV----NTGELRLQIEATRV  494 (726)
Q Consensus       453 ~~iG~~~i~L~~l~~~~~~~~w~~---L~~~----~~G~I~l~~~~~~~  494 (726)
                      ++||++.+++.++..+.....|++   |.+.    ..|+|++++.|.+.
T Consensus        86 ~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~  134 (140)
T 2dmh_A           86 KLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP  134 (140)
T ss_dssp             CCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred             ceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence            999999999999988887788988   6543    24999999999863

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.73  E-value=3e-17  Score=151.47  Aligned_cols=119  Identities=24%  Similarity=0.358  Sum_probs=105.6

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc--CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcc
Q 004872          378 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDEN  454 (726)
Q Consensus       378 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~--~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~  454 (726)
                      .+.|.|+|++|++|+.++..|.+||||+++++.+.++|+++  ++.||.|||+|.|.+.+....|.|+|||++.. +|++
T Consensus         9 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d~~   88 (136)
T 1wfj_A            9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDA   88 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCC
T ss_pred             cEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCCce
Confidence            35899999999999999988999999999998888999998  69999999999999888788999999999988 7999


Q ss_pred             eEEEEEEccccc-cCCeeeeeeeccc--cccceeEEEEEEEEecC
Q 004872          455 MGSARVNLEGLV-EGSVRDIWVPLEK--VNTGELRLQIEATRVDD  496 (726)
Q Consensus       455 iG~~~i~L~~l~-~~~~~~~w~~L~~--~~~G~I~l~~~~~~~~~  496 (726)
                      ||++.++|.++. .+.....||+|..  ...|+|+++++|.+...
T Consensus        89 lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           89 VGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             SEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECCS
T ss_pred             EEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeCCC
Confidence            999999999995 4445679999963  34699999999997654

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.73  E-value=7.6e-17  Score=151.08  Aligned_cols=112  Identities=33%  Similarity=0.584  Sum_probs=101.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-------
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-------  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-------  450 (726)
                      +.|.|+|++|++|+.++..|.+||||+++++++.++|+++ ++.||.|||.|.|.+......|.|+|||++..       
T Consensus        17 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~~~~   96 (148)
T 3kwu_A           17 AKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQ   96 (148)
T ss_dssp             EEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHHHHT
T ss_pred             cEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccccccc
Confidence            5899999999999999999999999999999999999999 99999999999999888778999999999973       


Q ss_pred             -----CCcceEEEEEEccccccCCeeeeeeecccc-----ccceeEEEEEEE
Q 004872          451 -----GDENMGSARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEAT  492 (726)
Q Consensus       451 -----~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~I~l~~~~~  492 (726)
                           ++++||++.++|.++  ......||+|...     ..|+|+++++|.
T Consensus        97 ~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           97 RFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             TTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             cccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                 799999999999999  3456799999853     359999999875

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.72  E-value=3.4e-17  Score=150.56  Aligned_cols=112  Identities=24%  Similarity=0.361  Sum_probs=102.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceE
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  456 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG  456 (726)
                      +.|.|+|++|++|+.++..|.+||||+++++++.++|+++ ++.||.|||+|.|.+.+....|.|+|||++.. ++++||
T Consensus        13 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG   92 (133)
T 2ep6_A           13 GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLG   92 (133)
T ss_dssp             EEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECC
T ss_pred             eEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCeeE
Confidence            5899999999999999989999999999999999999999 99999999999999887778899999999988 799999


Q ss_pred             EEEEEccccccCCeeeeeeecccc-----ccceeEEEEEEE
Q 004872          457 SARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEAT  492 (726)
Q Consensus       457 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~I~l~~~~~  492 (726)
                      ++.+++.++..+.  ..||+|...     ..|+|+++++|.
T Consensus        93 ~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           93 KVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             BCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEEE
Confidence            9999999997543  589999753     469999999886

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.72  E-value=5.8e-17  Score=152.79  Aligned_cols=117  Identities=26%  Similarity=0.338  Sum_probs=96.2

Q ss_pred             CccEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecC
Q 004872          377 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEI  449 (726)
Q Consensus       377 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~------~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~  449 (726)
                      ..+.|.|+|++|++|+.++..|.+||||+++++.      ..++|+++ ++.||.|||+|.|.+......|.|+|||++.
T Consensus        18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d~   97 (153)
T 3b7y_A           18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDENR   97 (153)
T ss_dssp             TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECCS
T ss_pred             CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECCC
Confidence            3458999999999999999889999999999942      68999999 9999999999999988777899999999998


Q ss_pred             C-CCcceEEEEEEccccccCCee------eeeeecccc-----ccceeEEEEEEEE
Q 004872          450 F-GDENMGSARVNLEGLVEGSVR------DIWVPLEKV-----NTGELRLQIEATR  493 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~~~~~~------~~w~~L~~~-----~~G~I~l~~~~~~  493 (726)
                      . ++++||++.++|.++..+...      ..||+|...     ..|+|+++++|.|
T Consensus        98 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           98 LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             CcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            8 799999999999999765532      589999753     3699999999863

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.70  E-value=9e-17  Score=148.32  Aligned_cols=112  Identities=20%  Similarity=0.411  Sum_probs=97.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCC-----------CCcEEEEEECCe-Eeecccc-CCCCCceeeEEEEEeeCCceeEEEEEE
Q 004872          379 RKINVTVVEGKDLMPKDKSGK-----------CDPYVKLQYGKI-VQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY  445 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~-----------~dpyv~v~lg~~-~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~  445 (726)
                      |.|.|+|++|++|+.+|..+.           +||||++++++. ..+|+++ ++.||.|||.|.|.+... ..|.|+||
T Consensus         6 g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V~   84 (136)
T 1gmi_A            6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAVF   84 (136)
T ss_dssp             EEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEEE
T ss_pred             eEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEEEE
Confidence            589999999999998775443           999999999665 4799999 999999999999997665 78999999


Q ss_pred             eecCC-CCcceEEEEEEccccccCC--eeeeeeeccccccceeEEEEEEEE
Q 004872          446 NEEIF-GDENMGSARVNLEGLVEGS--VRDIWVPLEKVNTGELRLQIEATR  493 (726)
Q Consensus       446 d~~~~-~d~~iG~~~i~L~~l~~~~--~~~~w~~L~~~~~G~I~l~~~~~~  493 (726)
                      |++.. +|++||++.+++.++..+.  ..+.|++|.+  .|+|+++++|..
T Consensus        85 d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~i~l~l~~~~  133 (136)
T 1gmi_A           85 HDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSG  133 (136)
T ss_dssp             ECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEE
T ss_pred             eCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--CeEEEEEEEEEe
Confidence            99987 7999999999999998653  4589999985  799999999874

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.69  E-value=2.2e-16  Score=152.47  Aligned_cols=116  Identities=26%  Similarity=0.367  Sum_probs=96.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~------~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-  450 (726)
                      +.|.|+|++|++|+.++..|.+||||+++++.      ..++|+++ ++.||.|||.|.|.+......|.|+|||++.. 
T Consensus         8 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~~~   87 (176)
T 3m7f_B            8 RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENRLT   87 (176)
T ss_dssp             EEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC---
T ss_pred             EEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCCCC
Confidence            58999999999999999899999999999953      68999999 99999999999999887778899999999988 


Q ss_pred             CCcceEEEEEEccccccCCee-e-----eeeecccc-----ccceeEEEEEEEEe
Q 004872          451 GDENMGSARVNLEGLVEGSVR-D-----IWVPLEKV-----NTGELRLQIEATRV  494 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~-~-----~w~~L~~~-----~~G~I~l~~~~~~~  494 (726)
                      ++++||++.++|.++...... .     .||+|...     ..|+|++++.|.+.
T Consensus        88 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           88 RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             -CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            899999999999999866433 1     79999863     26999999999976

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=1.2e-15  Score=141.62  Aligned_cols=103  Identities=21%  Similarity=0.419  Sum_probs=92.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeecCC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEEIF  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~~~  450 (726)
                      +.|.|+|++|++|+.++..|.+||||++++   +...+||+++ ++.||.|||.|.|.+..    ....|.|+|||++..
T Consensus        26 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~  105 (141)
T 2d8k_A           26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRF  105 (141)
T ss_dssp             CCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSS
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCC
Confidence            379999999999999998999999999999   3568999999 99999999999998533    257899999999988


Q ss_pred             -CCcceEEEEEEccccccCCeeeeeeeccccc
Q 004872          451 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  481 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  481 (726)
                       ++++||++.++|.++..+.....||+|.+..
T Consensus       106 ~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  137 (141)
T 2d8k_A          106 SRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG  137 (141)
T ss_dssp             SSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred             CCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence             8999999999999998887788999998754

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.66  E-value=7.8e-16  Score=141.58  Aligned_cols=103  Identities=17%  Similarity=0.230  Sum_probs=90.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEE-eeC---CceeEEEEEEeec
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEE  448 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~-v~~---~~~~l~i~V~d~~  448 (726)
                      +.|.|+|++|++|+. +.+|.+||||++++     +...+||+++ ++.||.|||+|.|. +..   ....|.|+|||++
T Consensus        20 ~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d   98 (134)
T 2b3r_A           20 GTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAE   98 (134)
T ss_dssp             TEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECC
T ss_pred             CEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECC
Confidence            489999999999997 77899999999999     3568999999 99999999999999 553   3578999999999


Q ss_pred             CC-CCcceEEEEEEccccccCCeeeeeeecccccc
Q 004872          449 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVNT  482 (726)
Q Consensus       449 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~  482 (726)
                      .. ++++||++.++|.++..+.....||+|.+.+.
T Consensus        99 ~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  133 (134)
T 2b3r_A           99 SLRENFFLGGITLPLKDFNLSKETVKWYQLTAATY  133 (134)
T ss_dssp             SSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC---
T ss_pred             CCCCCcEEEEEEEEhhhccCCCCcceeEECCCccC
Confidence            88 78999999999999988778889999987654

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.65  E-value=1.1e-15  Score=140.17  Aligned_cols=111  Identities=21%  Similarity=0.292  Sum_probs=95.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC--CeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-C---C
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG--KIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-G---D  452 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~---d  452 (726)
                      .|.|+|++|++|..+|..|.+||||+++++  .+.++|+++ ++.||.|||.|.|.+.... .|.|+|||++.. +   |
T Consensus         6 ~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~~d   84 (132)
T 3pyc_A            6 KIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQGA   84 (132)
T ss_dssp             EEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSSTTT
T ss_pred             EEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCCCC
Confidence            799999999999999999999999999995  479999999 9999999999999987654 499999999987 3   7


Q ss_pred             cceEEEEEEccccc-cCCeeeeeeecccc-------ccceeEEEEEE
Q 004872          453 ENMGSARVNLEGLV-EGSVRDIWVPLEKV-------NTGELRLQIEA  491 (726)
Q Consensus       453 ~~iG~~~i~L~~l~-~~~~~~~w~~L~~~-------~~G~I~l~~~~  491 (726)
                      ++||++.+++.++. .......|++|...       ..|+|.+++++
T Consensus        85 ~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           85 GFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             TEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence            99999999999884 33344588888754       26889888864

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.65  E-value=7.2e-16  Score=143.05  Aligned_cols=105  Identities=24%  Similarity=0.443  Sum_probs=92.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeec
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE  448 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~  448 (726)
                      +.|.|+|++|++|+.++..+.+||||++++     +...+||+++ ++.||+|||+|.|.+..    ....|.|+|||++
T Consensus        21 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  100 (141)
T 1v27_A           21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA  100 (141)
T ss_dssp             TEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBC
T ss_pred             CEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECC
Confidence            389999999999999999999999999999     4578999999 99999999999998533    2478999999999


Q ss_pred             CC-C--CcceEEEEEEccccccCCeeeeeeeccccccce
Q 004872          449 IF-G--DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE  484 (726)
Q Consensus       449 ~~-~--d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~  484 (726)
                      .. +  +++||++.++|.++.... ...||+|.+...|.
T Consensus       101 ~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g~  138 (141)
T 1v27_A          101 RVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSGP  138 (141)
T ss_dssp             SSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSCC
T ss_pred             CCcCCCCceEEEEEEEccccCCCC-CCceEECcccccCC
Confidence            88 4  899999999999987654 78999999866553

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.65  E-value=9.6e-16  Score=144.41  Aligned_cols=104  Identities=24%  Similarity=0.411  Sum_probs=90.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEEeeC--CceeEEEEEEeecCC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG--GGECLMVKCYNEEIF  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~v~~--~~~~l~i~V~d~~~~  450 (726)
                      +.|.|+|++|++|+.++ .|.+||||++++     ....++|+++ ++.||.|||+|.|.+..  ....|.|+|||++..
T Consensus        27 ~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~  105 (153)
T 3fbk_A           27 RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQ  105 (153)
T ss_dssp             SEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSS
T ss_pred             CEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCC
Confidence            48999999999999988 699999999999     2458999999 99999999999999743  345699999999987


Q ss_pred             -C-CcceEEEEEEcccccc-CCeeeeeeeccccccc
Q 004872          451 -G-DENMGSARVNLEGLVE-GSVRDIWVPLEKVNTG  483 (726)
Q Consensus       451 -~-d~~iG~~~i~L~~l~~-~~~~~~w~~L~~~~~G  483 (726)
                       + |++||++.++|.++.. +.....||+|.+...|
T Consensus       106 ~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g  141 (153)
T 3fbk_A          106 SRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG  141 (153)
T ss_dssp             GGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred             CCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence             5 8999999999999985 5677899999986554

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.65  E-value=1.4e-15  Score=143.12  Aligned_cols=102  Identities=25%  Similarity=0.455  Sum_probs=92.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC-
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~-  450 (726)
                      +.|.|+|++|++|+.++..+.+||||++++   ++..+||+++ ++.||.|||+|.|.+..   ....|.|+|||++.. 
T Consensus        42 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~  121 (152)
T 1rsy_A           42 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS  121 (152)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS
T ss_pred             CEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCC
Confidence            389999999999999998999999999999   4568999999 99999999999998754   257899999999988 


Q ss_pred             CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872          451 GDENMGSARVNLEGLVEGSVRDIWVPLEKV  480 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  480 (726)
                      ++++||++.++|.++..+.....||+|.+.
T Consensus       122 ~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          122 KHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             CCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             CCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            799999999999999877778899999763

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.65  E-value=7.2e-16  Score=148.00  Aligned_cols=117  Identities=15%  Similarity=0.249  Sum_probs=98.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceE
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  456 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG  456 (726)
                      +.|.|+|++|++|+..+..+.+||||+++++++.+||+++ ++.||+|||.|.|.+. ....|.|+|||++.. +|++||
T Consensus        36 ~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd~lG  114 (173)
T 2nq3_A           36 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLLG  114 (173)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEEE
T ss_pred             eEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCceEE
Confidence            4899999999999944444559999999998899999999 9999999999999874 578899999999988 889999


Q ss_pred             EEEEEccccccCC-----eeeeeeecccc-----ccceeEEEEEEEEecC
Q 004872          457 SARVNLEGLVEGS-----VRDIWVPLEKV-----NTGELRLQIEATRVDD  496 (726)
Q Consensus       457 ~~~i~L~~l~~~~-----~~~~w~~L~~~-----~~G~I~l~~~~~~~~~  496 (726)
                      ++.++|.++..+.     ....|++|...     ..|+|.+++++.+++.
T Consensus       115 ~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~~~  164 (173)
T 2nq3_A          115 TAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLES  164 (173)
T ss_dssp             EEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEECC-
T ss_pred             EEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeecch
Confidence            9999999987432     12679999764     3699999999997753

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.64  E-value=1.1e-15  Score=142.11  Aligned_cols=101  Identities=25%  Similarity=0.438  Sum_probs=91.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  450 (726)
                      +.|.|+|++|++|+.++..+.+||||++++   +...++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.. 
T Consensus        34 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~  113 (143)
T 3f04_A           34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS  113 (143)
T ss_dssp             TEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS
T ss_pred             CEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCC
Confidence            489999999999999988899999999999   5668999999 999999999999997543   47899999999988 


Q ss_pred             CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872          451 GDENMGSARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                      ++++||++.++|.++..+.....||+|.+
T Consensus       114 ~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          114 KHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            89999999999999988878889999975

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.64  E-value=1.5e-15  Score=138.60  Aligned_cols=99  Identities=24%  Similarity=0.443  Sum_probs=85.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEEeeC----CceeEEEEEEeec
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG----GGECLMVKCYNEE  448 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l~i~V~d~~  448 (726)
                      +.|.|+|++|++|+.++..|.+||||++++     +...++|+++ ++.||.|||+|.|.+..    ....|.|+|||++
T Consensus        18 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d   97 (129)
T 2bwq_A           18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA   97 (129)
T ss_dssp             TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECC
Confidence            489999999999999999999999999999     4578999999 99999999999999533    2578999999999


Q ss_pred             CC-C--CcceEEEEEEccccccCCeeeeeeecc
Q 004872          449 IF-G--DENMGSARVNLEGLVEGSVRDIWVPLE  478 (726)
Q Consensus       449 ~~-~--d~~iG~~~i~L~~l~~~~~~~~w~~L~  478 (726)
                      .. +  +++||++.++|.++.... ...||+|+
T Consensus        98 ~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           98 RVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             ------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             cCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            88 4  899999999999987655 78999984

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.64  E-value=6.3e-16  Score=174.98  Aligned_cols=118  Identities=25%  Similarity=0.419  Sum_probs=106.4

Q ss_pred             CCCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCCCCC
Q 004872          506 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNALLA  582 (726)
Q Consensus       506 ~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~~~~  582 (726)
                      ....|.|+|+|++|++|++.|..|.+||||++++++.+++|+++++|+||+|||+|.|.+.   ...|.|+|||+|.+++
T Consensus       383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~  462 (510)
T 3jzy_A          383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSP  462 (510)
T ss_dssp             ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSS
T ss_pred             CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCC
Confidence            3567899999999999999999999999999999999999999999999999999999984   4679999999999999


Q ss_pred             CCeeEEEEEEccccCCCC----ceeeEEecCCCCCeEEEEEEEEE
Q 004872          583 SSSIGDCVVEYQRLPPNQ----MADKWIPLQGVRKGEIHVLITRK  623 (726)
Q Consensus       583 d~~lG~~~i~l~~l~~~~----~~~~w~~L~~~~~G~i~l~l~~~  623 (726)
                      |++||++.+++.++..+.    +...|++|.+...|+|+++++++
T Consensus       463 ~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          463 DDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             CCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             CCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            999999999999986543    37799999999999999999884

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.63  E-value=2e-15  Score=138.07  Aligned_cols=95  Identities=17%  Similarity=0.296  Sum_probs=76.8

Q ss_pred             CceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeee-CCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCC
Q 004872          508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASS  584 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~-~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~  584 (726)
                      ..+.|.|+|.+|++|+.   .|.+||||++.  .+..+|+++. +++||+|||+|.|.+.  ...|.|+|||+| +++|+
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd   76 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDT   76 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEE
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCC
Confidence            45899999999998853   67899999999  3344555554 7999999999999985  467999999999 89999


Q ss_pred             eeEEEEEEccccCCCC--ceeeEEec
Q 004872          585 SIGDCVVEYQRLPPNQ--MADKWIPL  608 (726)
Q Consensus       585 ~lG~~~i~l~~l~~~~--~~~~w~~L  608 (726)
                      +||++.++|.++....  ....|.++
T Consensus        77 ~iG~~~i~l~~l~~~~~~~~~~~~~~  102 (131)
T 2cjt_A           77 MVGTVWIPLRTIRQSNEEGPGEWLTL  102 (131)
T ss_dssp             EEEEEEEEGGGSCBCSSCCCCEEEEC
T ss_pred             eEEEEEEEHHHhhhcCCCCccccEEc
Confidence            9999999999985432  22256555

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.63  E-value=7.9e-16  Score=144.33  Aligned_cols=105  Identities=30%  Similarity=0.457  Sum_probs=94.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC--ceeEEEEEEeecCC-
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF-  450 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~-  450 (726)
                      .|.|+|++|++|+.++..+.+||||+++++     ...+||+++ ++.||.|||+|.|.+...  ...|.|+|||++.. 
T Consensus        32 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~  111 (149)
T 1a25_A           32 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS  111 (149)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSS
T ss_pred             EEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCCCC
Confidence            799999999999999989999999999994     468999999 999999999999998653  46899999999988 


Q ss_pred             CCcceEEEEEEccccccCCeeeeeeecccccccee
Q 004872          451 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGEL  485 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I  485 (726)
                      ++++||++.++|.++..+ ....||+|.+...|++
T Consensus       112 ~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g~~  145 (149)
T 1a25_A          112 RNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGEY  145 (149)
T ss_dssp             CCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHTT
T ss_pred             CCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCCcc
Confidence            899999999999999765 4679999998766765

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.63  E-value=1.2e-15  Score=143.79  Aligned_cols=100  Identities=17%  Similarity=0.213  Sum_probs=89.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeec
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  448 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~------~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~  448 (726)
                      +.|.|+|++|+||+.++.+|.+||||++++..      .++||+++ ++.||+|||+|.|.+...   ...|.|+|||++
T Consensus        43 ~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d  122 (155)
T 2z0u_A           43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTD  122 (155)
T ss_dssp             TEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEEC
T ss_pred             CEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECC
Confidence            38999999999999999999999999999943      27999999 999999999999997653   568999999999


Q ss_pred             CC-CCcceEEEEEEcccccc-CCeeeeeeecc
Q 004872          449 IF-GDENMGSARVNLEGLVE-GSVRDIWVPLE  478 (726)
Q Consensus       449 ~~-~d~~iG~~~i~L~~l~~-~~~~~~w~~L~  478 (726)
                      .. ++++||++.++|.++.. +.....||+|.
T Consensus       123 ~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          123 RSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             TTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             CCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            88 89999999999999963 55678999985

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.62  E-value=1.3e-15  Score=142.61  Aligned_cols=103  Identities=17%  Similarity=0.255  Sum_probs=90.7

Q ss_pred             cEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeec
Q 004872          379 RKINVTVVEGKDLMPKD-KSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEE  448 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d-~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~  448 (726)
                      +.|.|+|++|++|+.++ ..|.+||||++++.     ...++|+++ ++.||.|||+|.|.+...   ...|.|+|||++
T Consensus        23 ~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d  102 (148)
T 3fdw_A           23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHG  102 (148)
T ss_dssp             TEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEEC
T ss_pred             CEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECC
Confidence            38999999999999888 57899999999994     348999999 999999999999997663   457999999999


Q ss_pred             CC-CCcceEEEEEEccccccCCeeeeeeeccccc
Q 004872          449 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  481 (726)
Q Consensus       449 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  481 (726)
                      .. ++++||++.++|.++..+.....||+|.++.
T Consensus       103 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A          103 RFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             GGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             CCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            88 7999999999999998776778999998753

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.62  E-value=2.4e-15  Score=135.49  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=98.4

Q ss_pred             CceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeee-CCCCCeeeeEEEEec-----CCCeEEEEEEECCCCC
Q 004872          508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTLEFPD-----DGSPLTLHVRDHNALL  581 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~-~t~nP~wne~~~f~v-----~~~~l~i~V~d~d~~~  581 (726)
                      ..-.|+|.|.+|.+|+     |.+|||+++.+-+.+++|++++ +++||+|||.|.|++     .+..|.+.|+|+++++
T Consensus        19 ~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~   93 (144)
T 3l9b_A           19 SHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVF   93 (144)
T ss_dssp             CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTS
T ss_pred             CcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcccc
Confidence            3467999999999998     5899999999999999999998 599999999999997     3688999999999999


Q ss_pred             CCCeeEEEEEEccccCCCCceeeEEecCCCC----CeEEEEEEEEEe
Q 004872          582 ASSSIGDCVVEYQRLPPNQMADKWIPLQGVR----KGEIHVLITRKV  624 (726)
Q Consensus       582 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~----~G~i~l~l~~~~  624 (726)
                      ++++||++.++|.++........+-+|.+..    .++|.++++|+-
T Consensus        94 ~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~p  140 (144)
T 3l9b_A           94 SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQA  140 (144)
T ss_dssp             CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecC
Confidence            9999999999999998776666777775432    389999999943

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.61  E-value=5.3e-15  Score=137.42  Aligned_cols=101  Identities=29%  Similarity=0.489  Sum_probs=90.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeecccc-CCCCCceeeEEEEE-eeCC---ceeEEEEEEeec
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELD-EIGG---GECLMVKCYNEE  448 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~-~t~nP~wne~f~f~-v~~~---~~~l~i~V~d~~  448 (726)
                      +.|.|+|++|++|+.++..|.+||||+++++.     ..+||+++ ++.||.|||.|.|. +...   ...|.|+|||++
T Consensus        29 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  108 (142)
T 2chd_A           29 SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDED  108 (142)
T ss_dssp             TEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEEC
T ss_pred             CEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECC
Confidence            48999999999999999899999999999943     68999999 99999999999998 4332   368999999999


Q ss_pred             CC-CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872          449 IF-GDENMGSARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       449 ~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                      .. ++++||++.++|.++..+.....|++|+.
T Consensus       109 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          109 KFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             TTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             CCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            88 78999999999999988888888998875

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.60  E-value=1.5e-15  Score=141.09  Aligned_cols=102  Identities=23%  Similarity=0.418  Sum_probs=90.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECC--------------eEeecccc-CCCCCceeeEEEEE-eeC---CceeE
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGK--------------IVQRTRTA-HSPNHVWNQKFELD-EIG---GGECL  440 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~--------------~~~kT~~~-~t~nP~wne~f~f~-v~~---~~~~l  440 (726)
                      .|.|+|++|++|+.++..|.+||||+++++.              ..+||+++ ++.||.|||.|.|. +..   ....|
T Consensus        19 ~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l   98 (142)
T 1rh8_A           19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTL   98 (142)
T ss_dssp             EEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEE
T ss_pred             EEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEE
Confidence            7999999999999999999999999999953              25899999 99999999999997 432   36789


Q ss_pred             EEEEEeecCC-CCcceEEEEEEccccccCCeeeeeeeccccc
Q 004872          441 MVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  481 (726)
Q Consensus       441 ~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  481 (726)
                      .|+|||++.. ++++||++.++|.++........||+|.+..
T Consensus        99 ~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           99 EVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            9999999988 7899999999999998766778999998754

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.59  E-value=1e-14  Score=134.86  Aligned_cols=100  Identities=19%  Similarity=0.279  Sum_probs=87.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~  450 (726)
                      +.|.|+|++|++   ++..|.+||||++++.    ...++|+++ ++.||+|||+|.|.+...   ...|.|+|||++..
T Consensus        26 ~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~  102 (138)
T 1wfm_A           26 AELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF  102 (138)
T ss_dssp             TEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSS
T ss_pred             CEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCC
Confidence            389999999994   5778999999999992    236899999 999999999999997653   56899999999988


Q ss_pred             -CCcceEEEEEEccccccCCeeeeeeeccccc
Q 004872          451 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  481 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  481 (726)
                       ++++||++.++|.++..+.....|++|.+..
T Consensus       103 ~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A          103 SRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             CTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             CCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence             8999999999999997666778999998754

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=8.8e-15  Score=135.91  Aligned_cols=102  Identities=23%  Similarity=0.282  Sum_probs=88.9

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG-----KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  449 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg-----~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  449 (726)
                      +.|.|+|++|++|+.++..| +||||++++.     ...++|+++ ++.||+|||+|.|.+...   ...|.|+|||++.
T Consensus        24 ~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  102 (142)
T 2dmg_A           24 NKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG  102 (142)
T ss_dssp             TEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC
T ss_pred             CEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC
Confidence            38999999999999999888 9999999992     268899999 999999999999997542   4589999999997


Q ss_pred             C-C--CcceEEEEEEccccccCCeeeeeeeccccc
Q 004872          450 F-G--DENMGSARVNLEGLVEGSVRDIWVPLEKVN  481 (726)
Q Consensus       450 ~-~--d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  481 (726)
                      . .  +++||++.++|.++........||+|.+.+
T Consensus       103 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~  137 (142)
T 2dmg_A          103 FLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDS  137 (142)
T ss_dssp             SSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSC
T ss_pred             ccccCCcEEEEEEEecccccccccccceeeccCCC
Confidence            6 3  469999999999998766778999998753

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.59  E-value=2.5e-14  Score=132.13  Aligned_cols=102  Identities=18%  Similarity=0.208  Sum_probs=88.3

Q ss_pred             cEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEeecccc-CCCCCceeeEEEEE-eeC---CceeEEEEEEeecC
Q 004872          379 RKINVTVVEGKDLMPKDKS-GKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELD-EIG---GGECLMVKCYNEEI  449 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~-g~~dpyv~v~lg---~~~~kT~~~-~t~nP~wne~f~f~-v~~---~~~~l~i~V~d~~~  449 (726)
                      +.|.|+|++|++|+.++.. +.+||||++++.   ...++|+++ ++.||+|||+|.|. +..   ....|.|+|||++.
T Consensus        22 ~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~  101 (138)
T 1ugk_A           22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR  101 (138)
T ss_dssp             TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCC
Confidence            3899999999999999985 899999999993   479999999 99999999999996 443   24689999999998


Q ss_pred             C-CCcceEEEEEEccccccCC-eeeeeeecccc
Q 004872          450 F-GDENMGSARVNLEGLVEGS-VRDIWVPLEKV  480 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~~~~-~~~~w~~L~~~  480 (726)
                      . ++++||++.++|.++..+. ....|++|...
T Consensus       102 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A          102 FSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             SCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             CCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            8 8899999999999997654 34567988764

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.59  E-value=4.1e-15  Score=142.78  Aligned_cols=103  Identities=25%  Similarity=0.308  Sum_probs=91.1

Q ss_pred             cEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC--C---eEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEE-eecCC
Q 004872          379 RKINVTVVEGKDLMPKDK-SGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY-NEEIF  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~-~g~~dpyv~v~lg--~---~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~-d~~~~  450 (726)
                      +.|.|+|++|++|+.+|. .|.+||||++++.  .   ..+||+++ ++.||+|||+|.|.+......|.|+|| |++..
T Consensus        30 ~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d~~  109 (171)
T 2q3x_A           30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRM  109 (171)
T ss_dssp             TEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECSTT
T ss_pred             CEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCCCC
Confidence            389999999999999985 7999999999993  2   38999999 999999999999998667889999999 99888


Q ss_pred             -CCcceEEEEEEccccccCCeeeeeeeccccc
Q 004872          451 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  481 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  481 (726)
                       ++++||++.++|.++..+.....||+|.+..
T Consensus       110 ~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  141 (171)
T 2q3x_A          110 DHKCFMGVAQILLEELDLSSMVIGWYKLFPPS  141 (171)
T ss_dssp             CSSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred             CCCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence             7899999999999998777788999998753

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=7.3e-15  Score=137.34  Aligned_cols=103  Identities=19%  Similarity=0.279  Sum_probs=88.5

Q ss_pred             cEEEEEEEEeecCCCC-CC------CCCCCcEEEEEEC---CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEE
Q 004872          379 RKINVTVVEGKDLMPK-DK------SGKCDPYVKLQYG---KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKC  444 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~-d~------~g~~dpyv~v~lg---~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V  444 (726)
                      +.|.|+|++|++|+.+ +.      .+.+||||++++.   ...++|+++ ++.||+|||+|.|.+...   ...|.|+|
T Consensus        26 ~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V  105 (147)
T 2enp_A           26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTV  105 (147)
T ss_dssp             TEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEE
T ss_pred             CEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEE
Confidence            4899999999999874 43      3589999999994   468899999 999999999999997542   45899999


Q ss_pred             EeecCC-CCcceEEEEEEccccccCCeeeeeeeccccc
Q 004872          445 YNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN  481 (726)
Q Consensus       445 ~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~  481 (726)
                      ||++.. ++++||++.++|.++........|++|.+..
T Consensus       106 ~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  143 (147)
T 2enp_A          106 VDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSG  143 (147)
T ss_dssp             ECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCC
T ss_pred             EECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecCC
Confidence            999988 7899999999999998766667899998753

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.58  E-value=1.7e-14  Score=133.07  Aligned_cols=88  Identities=19%  Similarity=0.348  Sum_probs=78.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  449 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  449 (726)
                      +.|.|+|++|++|+.++..|.+||||+++++.     ..++|+++ ++.||.|||.|.|.+...   ...|.|+|||++.
T Consensus        16 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~   95 (138)
T 3n5a_A           16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDK   95 (138)
T ss_dssp             TEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCS
T ss_pred             CeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCC
Confidence            48999999999999999899999999999942     58899999 999999999999997654   3689999999998


Q ss_pred             C-CCcceEEEEEEccccc
Q 004872          450 F-GDENMGSARVNLEGLV  466 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~  466 (726)
                      . ++++||++.+++.++.
T Consensus        96 ~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           96 LSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             SSCCEEEEEEEESSSSCH
T ss_pred             CCCCcEEEEEEEccccCC
Confidence            8 8999999999999753

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.58  E-value=2e-14  Score=136.28  Aligned_cols=105  Identities=20%  Similarity=0.303  Sum_probs=89.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYG--K---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  449 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  449 (726)
                      +.|.|+|++|+||+.++..|.+||||+++++  +   ..++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        25 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~  104 (159)
T 1tjx_A           25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK  104 (159)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCC
Confidence            4899999999999999989999999999993  2   47899999 999999999999997653   4679999999998


Q ss_pred             C-CCcceEEEEEEcccc----------cc--CCeeeeeeeccccccc
Q 004872          450 F-GDENMGSARVNLEGL----------VE--GSVRDIWVPLEKVNTG  483 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l----------~~--~~~~~~w~~L~~~~~G  483 (726)
                      . ++++||++.+++..+          ..  +.....||+|.+...|
T Consensus       105 ~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~~~  151 (159)
T 1tjx_A          105 IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEV  151 (159)
T ss_dssp             SSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHHHH
T ss_pred             CCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcccc
Confidence            8 799999999999853          22  3356789999875443

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.57  E-value=1.2e-14  Score=162.59  Aligned_cols=110  Identities=24%  Similarity=0.437  Sum_probs=98.4

Q ss_pred             CCCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEec----CCCeEEEEEEECCCCC
Q 004872          506 GSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPD----DGSPLTLHVRDHNALL  581 (726)
Q Consensus       506 ~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v----~~~~l~i~V~d~d~~~  581 (726)
                      ....+.|+|+|++|++|+. |..|.+||||+|.+++++++|+++++++||+|||+|.|.+    ....|.|+|||+|.++
T Consensus       390 ~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~  468 (540)
T 3nsj_A          390 QRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGW  468 (540)
T ss_dssp             STTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSS
T ss_pred             cCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCC
Confidence            3457899999999999998 9999999999999999999999999999999999999984    3678999999999999


Q ss_pred             CCCeeEEEEEEccccCCCCceeeEEecCCCCCeEEEEEEEEE
Q 004872          582 ASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRK  623 (726)
Q Consensus       582 ~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~~  623 (726)
                      +||+||++.++|.   .+ ....|++|.   .|+|+++++..
T Consensus       469 ~dD~LG~~~~~L~---~g-~~~~~~~l~---~G~l~~~~~~~  503 (540)
T 3nsj_A          469 DDDLLGSCDRSPH---SG-FHEVTCELN---HGRVKFSYHAK  503 (540)
T ss_dssp             CCEEEEEEEECCC---SE-EEEEEEECS---SSEEEEEEEEE
T ss_pred             CCCEEEEEEEEee---CC-cEEEEEEcC---CeEEEEEEEEE
Confidence            9999999999987   23 467899876   59999998874

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.57  E-value=4.6e-15  Score=135.63  Aligned_cols=87  Identities=14%  Similarity=0.188  Sum_probs=74.0

Q ss_pred             cccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEccEEeeeecC-CCCCCcccceeEEEE
Q 004872          184 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDAR-PGSDPRWDSMFNMVL  262 (726)
Q Consensus       184 ~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~~~rTt~i~-~t~nP~WnEtf~~~v  262 (726)
                      +.|.|.|+|++|++|+.   .|.+                      ||||+|+ +...+|++++ ++.||+|||+|.|.+
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~----------------------DPYv~v~-~~~~kt~~~~~~t~nP~WnE~f~f~v   56 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKF----------------------NTYVTLK-VQNVKSTTIAVRGSQPSWEQDFMFEI   56 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGC----------------------EEEEEEE-ETTEEEECCCEESSSCEEEEEEEEEE
T ss_pred             cceEEEEEEEEeECCCC---CCCc----------------------CeEEEEE-ecCEEEeEecCCCCCceECCEEEEEE
Confidence            56999999999998853   3433                      9999999 5445666665 799999999999999


Q ss_pred             ecCCceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872          263 HEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  298 (726)
Q Consensus       263 ~~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~  298 (726)
                      .+....|.|+|||+| . .+||+||++.|+|.++..
T Consensus        57 ~~~~~~L~~~V~D~d-~-~~dd~iG~~~i~l~~l~~   90 (131)
T 2cjt_A           57 NRLDLGLTVEVWNKG-L-IWDTMVGTVWIPLRTIRQ   90 (131)
T ss_dssp             CCCSSEEEEEEEECC-S-SCEEEEEEEEEEGGGSCB
T ss_pred             eCCCCeEEEEEEECC-C-CCCCeEEEEEEEHHHhhh
Confidence            877778999999999 5 789999999999999874

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.56  E-value=2.3e-14  Score=136.46  Aligned_cols=85  Identities=15%  Similarity=0.218  Sum_probs=73.2

Q ss_pred             CceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeee-CCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCC
Q 004872          508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASS  584 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~-~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~  584 (726)
                      ..+.|+|+|++|++++   ..|.+||||+++  .+..+|++++ +++||+|||+|.|.+.  ...|.|+|||+| +++|+
T Consensus        12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd   85 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDT   85 (167)
T ss_dssp             CCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCE
T ss_pred             ceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCc
Confidence            3689999999999885   367899999999  3445676665 6999999999999985  468999999999 88999


Q ss_pred             eeEEEEEEccccCC
Q 004872          585 SIGDCVVEYQRLPP  598 (726)
Q Consensus       585 ~lG~~~i~l~~l~~  598 (726)
                      +||++.|+|..+..
T Consensus        86 ~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           86 MVGTVWIPLRTIRQ   99 (167)
T ss_dssp             EEEEEEEEGGGSCB
T ss_pred             eEEEEEEEHHHhcc
Confidence            99999999999854

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.55  E-value=6.7e-14  Score=133.64  Aligned_cols=100  Identities=20%  Similarity=0.297  Sum_probs=85.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  449 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  449 (726)
                      +.|.|+|++|++|+.++.+|.+||||+++++.     ..++|+++ ++.||+|||+|.|.+...   ...|.|+|||++.
T Consensus        37 ~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  116 (166)
T 2cm5_A           37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI  116 (166)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             CEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCC
Confidence            48999999999999999999999999999943     68999999 999999999999997653   5689999999998


Q ss_pred             C-CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872          450 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  480 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  480 (726)
                      . ++++||++.+++.++..  ....||+|...
T Consensus       117 ~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~~  146 (166)
T 2cm5_A          117 GKSNDYIGGCQLGISAKGE--RLKHWYECLKN  146 (166)
T ss_dssp             SSCCEEEEEEEEETTCCHH--HHHHHHHHHHC
T ss_pred             CCCCcEEEeEEEecccCCc--hhHHHHHHHhC
Confidence            8 78999999999998632  33456666543

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.53  E-value=1e-13  Score=130.40  Aligned_cols=99  Identities=26%  Similarity=0.371  Sum_probs=78.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---Eeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GKI---VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  449 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g~~---~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  449 (726)
                      +.|.|+|++|++|+.++..|.+||||++++  ++.   .+||+++ ++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        30 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~  109 (153)
T 1w15_A           30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER  109 (153)
T ss_dssp             TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCC
Confidence            489999999999999998899999999999  433   7899999 999999999999997664   4789999999998


Q ss_pred             C-CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872          450 F-GDENMGSARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                      . ++++||++.+++.+  .+.....|++|..
T Consensus       110 ~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~  138 (153)
T 1w15_A          110 GSRNEVIGRLVLGATA--EGSGGGHWKEICD  138 (153)
T ss_dssp             TSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred             CCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence            8 79999999999988  2333445666554

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.52  E-value=2.3e-14  Score=136.45  Aligned_cols=87  Identities=13%  Similarity=0.175  Sum_probs=74.3

Q ss_pred             cccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEccEEeeeecC-CCCCCcccceeEEEE
Q 004872          184 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELEELTRRTDAR-PGSDPRWDSMFNMVL  262 (726)
Q Consensus       184 ~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g~~~rTt~i~-~t~nP~WnEtf~~~v  262 (726)
                      +.|+|.|+|++|++|..   .|.+                      ||||+|+ +...+|++++ ++.||+|||+|.|.+
T Consensus        12 ~~~~L~V~V~~A~~l~~---~g~~----------------------DPYV~v~-~~~~kt~~~~~~t~nP~WnE~f~f~v   65 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDGA---QEKF----------------------NTYVTLK-VQNVESTTIAVRGSQPSWEQDFMFEI   65 (167)
T ss_dssp             CCCEEEEEEEEEECSSC---GGGC----------------------EEEEEEE-ETTEEEECCCEESSSCEEEEEEEEEC
T ss_pred             ceEEEEEEEEEEECCCC---CCCC----------------------CeEEEEE-ecceEEEEecCCCCCCCCCCEEEEEe
Confidence            56899999999998842   3433                      9999999 5555677765 699999999999999


Q ss_pred             ecCCceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872          263 HEETGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  298 (726)
Q Consensus       263 ~~~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~  298 (726)
                      .+....|.|+|||+| . .+||+||++.|+|.++..
T Consensus        66 ~~~~~~L~~~V~D~d-~-~~dd~iG~~~i~L~~l~~   99 (167)
T 2cjs_A           66 NRLDLGLTVEVWNKG-L-IWDTMVGTVWIPLRTIRQ   99 (167)
T ss_dssp             CCTTSEEEEEEEECC-S-SCCEEEEEEEEEGGGSCB
T ss_pred             eCCCCEEEEEEEECC-C-CCCceEEEEEEEHHHhcc
Confidence            877788999999999 5 789999999999999874

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.49  E-value=1.7e-13  Score=153.25  Aligned_cols=87  Identities=16%  Similarity=0.240  Sum_probs=77.3

Q ss_pred             cccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc-cEEeeeecCCCCCCcccceeEEEE
Q 004872          184 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE-ELTRRTDARPGSDPRWDSMFNMVL  262 (726)
Q Consensus       184 ~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g-~~~rTt~i~~t~nP~WnEtf~~~v  262 (726)
                      ..|.|.|+|++|++|+. |..|.+                      ||||+|.++ ...||+++++++||+|||+|.|.+
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~s----------------------DPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~  448 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTAT----------------------DAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFEN  448 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCC----------------------CEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEE
T ss_pred             cccEEEEEEEEccCCCc-ccCCCc----------------------CeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEE
Confidence            36899999999999998 877765                      999999996 468899999999999999999986


Q ss_pred             ec--CCceEEEEEEEeCCCCCCcceeEEEEEece
Q 004872          263 HE--ETGTVRFNLYECIPGHVKYDYLTSCEVKMK  294 (726)
Q Consensus       263 ~~--~~~~L~~~V~D~d~~~~~dd~lG~~~i~L~  294 (726)
                      .+  ..+.|+|+|||+|.. .+||+||++.++|.
T Consensus       449 ~~~~~~~~L~~~V~D~D~~-~~dD~LG~~~~~L~  481 (540)
T 3nsj_A          449 VLLSTGGPLRVQVWDADYG-WDDDLLGSCDRSPH  481 (540)
T ss_dssp             EETTTCCCEEEEEEECCSS-SCCEEEEEEEECCC
T ss_pred             ecCCCCCEEEEEEEECCCC-CCCCEEEEEEEEee
Confidence            54  478999999999986 78899999999985

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.49  E-value=5.3e-14  Score=162.10  Aligned_cols=109  Identities=22%  Similarity=0.382  Sum_probs=98.6

Q ss_pred             CCceEEEEEEEEeecCcc---cccCCCCccEEEEEECC---eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEEC
Q 004872          507 SGNGWIELVIVEARDLVA---ADLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDH  577 (726)
Q Consensus       507 ~~~g~L~v~v~~a~~L~~---~d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~  577 (726)
                      .+.+.|+|+|++|++|+.   +|..|.+||||++++++   .++||+++++++||+|||+|.|.+.   ...|.|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            567999999999999999   88889999999999974   6889999999999999999999985   47899999999


Q ss_pred             CCCCCCCeeEEEEEEccccCCCCceeeEEecCCCCCeEEEE
Q 004872          578 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHV  618 (726)
Q Consensus       578 d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l  618 (726)
                      |.++ |++||++.++|.++..+.....|++|.+.  +++.+
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~--~e~~l  132 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV--TEMVL  132 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT--EEEEE
T ss_pred             CCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC--ceEee
Confidence            9999 99999999999999888888999999864  44443

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.47  E-value=1.9e-13  Score=154.55  Aligned_cols=115  Identities=21%  Similarity=0.346  Sum_probs=103.9

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC-CCcc
Q 004872          378 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF-GDEN  454 (726)
Q Consensus       378 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~-~d~~  454 (726)
                      .+.|.|+|++|++|+.+|..|.+||||++++++..++|+++ ++.||.|||.|.|.+... ...|.|+|||++.. +|++
T Consensus       386 ~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d~  465 (510)
T 3jzy_A          386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDF  465 (510)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCCE
T ss_pred             CceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCCc
Confidence            35899999999999999999999999999999999999999 999999999999998665 57899999999998 7999


Q ss_pred             eEEEEEEccccccCCe----eeeeeeccccccceeEEEEEEE
Q 004872          455 MGSARVNLEGLVEGSV----RDIWVPLEKVNTGELRLQIEAT  492 (726)
Q Consensus       455 iG~~~i~L~~l~~~~~----~~~w~~L~~~~~G~I~l~~~~~  492 (726)
                      ||++.+++.++..+..    ...|++|.+...|+|.+++++.
T Consensus       466 lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          466 LGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             EEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             eEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            9999999999976443    6789999998899999988754

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.47  E-value=2.9e-13  Score=154.85  Aligned_cols=113  Identities=19%  Similarity=0.300  Sum_probs=97.4

Q ss_pred             CCceEEEEEEEEeecCccccc--CCCCccEEEEEECC-----eEEEeEeeeCC-CCCeeeeEEEEecC---CCeEEEEEE
Q 004872          507 SGNGWIELVIVEARDLVAADL--RGTSDPYVKVQYGD-----LKKRTKVIFKT-LNPQWHQTLEFPDD---GSPLTLHVR  575 (726)
Q Consensus       507 ~~~g~L~v~v~~a~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~v~~~t-~nP~wne~~~f~v~---~~~l~i~V~  575 (726)
                      ...+.|+|+|++|++|+..+.  .|.+||||+|.+.+     .++||++++++ +||+|||+|.|.+.   ...|.|+||
T Consensus       494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~  573 (624)
T 1djx_A          494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE  573 (624)
T ss_dssp             CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred             ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence            367899999999999998874  78999999999944     68899999997 99999999999985   367999999


Q ss_pred             ECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC-----CeEEEEEEEE
Q 004872          576 DHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  622 (726)
Q Consensus       576 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~  622 (726)
                      |+|.+++|++||++.++|..+..+.   +|++|.+..     .|.|.+.+++
T Consensus       574 D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~~~~~L~v~i~~  622 (624)
T 1djx_A          574 DYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHPSATLFVKISI  622 (624)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             EcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCCCceEEEEEEEE
Confidence            9999999999999999999998753   689986432     3777777776

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.43  E-value=1e-12  Score=118.46  Aligned_cols=111  Identities=17%  Similarity=0.240  Sum_probs=97.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc--CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-CCc
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-GDE  453 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~--~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-~d~  453 (726)
                      .|+|.|.+|.+|+     |.+|||+++.+.+.+++|+++  ++.||+|||.|+|.+..+   .+.|.|.|+|+++. ++.
T Consensus        22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nr   96 (144)
T 3l9b_A           22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNK   96 (144)
T ss_dssp             EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCE
T ss_pred             EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCC
Confidence            7999999999998     578999999999999999999  499999999999997653   78999999999998 999


Q ss_pred             ceEEEEEEccccccCCeeeeeeeccccc----cceeEEEEEEEEec
Q 004872          454 NMGSARVNLEGLVEGSVRDIWVPLEKVN----TGELRLQIEATRVD  495 (726)
Q Consensus       454 ~iG~~~i~L~~l~~~~~~~~w~~L~~~~----~G~I~l~~~~~~~~  495 (726)
                      +||++.++|.++...+....+-+|.+.+    .++|.++++|.+.+
T Consensus        97 lIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~  142 (144)
T 3l9b_A           97 LIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAAD  142 (144)
T ss_dssp             EEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEETT
T ss_pred             EEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCCC
Confidence            9999999999998777655666776543    48999999999753

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.35  E-value=7.9e-14  Score=155.59  Aligned_cols=97  Identities=22%  Similarity=0.353  Sum_probs=14.9

Q ss_pred             CceEEEEEEEEeecCcccccCCCCccEEEEEECCe-EEEeEeeeCC---CCCeeeeEEEEecC--CCeEEEEEEEC-C--
Q 004872          508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDL-KKRTKVIFKT---LNPQWHQTLEFPDD--GSPLTLHVRDH-N--  578 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~v~~~t---~nP~wne~~~f~v~--~~~l~i~V~d~-d--  578 (726)
                      ..+.|+|+|++|++|+++|     ||||++++++. ..||+++++|   +||+|||+|.|.+.  ...|.|+|||+ |  
T Consensus         9 ~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~   83 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKK   83 (483)
T ss_dssp             EEECC--------------------------------------------------CCEECC-------------------
T ss_pred             eccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCcc
Confidence            3478999999999999876     99999999876 6799999999   99999999999953  47899999994 4  


Q ss_pred             -CCCCCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          579 -ALLASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       579 -~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                       ..++|++||++.|++..+..+...+.|++|.
T Consensus        84 ~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~  115 (483)
T 3bxj_A           84 RKKDKAGYVGLVTVPVATLAGRHFTEQWYPVT  115 (483)
T ss_dssp             -----------------------CCEECC---
T ss_pred             ccCCCCceEEEEEEEHHHhcCCCCCCeEEECC
Confidence             3688999999999999998888889999994

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.31  E-value=2.5e-12  Score=148.28  Aligned_cols=92  Identities=15%  Similarity=0.302  Sum_probs=81.9

Q ss_pred             ccccEEEEEEEeecCCCC---CCCCCCCcccccccCCCCccccccCCCCcCcEEEEEEc----cEEeeeecCCCCCCccc
Q 004872          183 AVGGIVYVRVISASKLSR---SSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIELE----ELTRRTDARPGSDPRWD  255 (726)
Q Consensus       183 ~~~GvL~V~v~~A~~L~~---~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~g----~~~rTt~i~~t~nP~Wn  255 (726)
                      .+.|.|.|+|++|++|+.   +|..|.+                      ||||+|+++    ...||+++++++||+||
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~s----------------------DPYV~V~l~~~~~~k~kTkvik~tlNPvWN   72 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTP----------------------DPYVELFISTTPDSRKRTRHFNNDINPVWN   72 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCC----------------------CEEEEEECTTSTTCCEECCCCTTCSSCEEE
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCc----------------------CeEEEEEEecCCCCeEecceEcCCCCCeee
Confidence            467999999999999998   7766654                      999999996    46789999999999999


Q ss_pred             ceeEEEEecC-CceEEEEEEEeCCCCCCcceeEEEEEeceeccC
Q 004872          256 SMFNMVLHEE-TGTVRFNLYECIPGHVKYDYLTSCEVKMKYVAD  298 (726)
Q Consensus       256 Etf~~~v~~~-~~~L~~~V~D~d~~~~~dd~lG~~~i~L~~l~~  298 (726)
                      |+|.|.+... .+.|.|+|||+|.. . +++||++.++|.+|..
T Consensus        73 EtF~F~v~~~~~~~L~~~V~D~D~~-~-ddfIG~v~I~L~~L~~  114 (749)
T 1cjy_A           73 ETFEFILDPNQENVLEITLMDANYV-M-DETLGTATFTVSSMKV  114 (749)
T ss_dssp             EEEEEEECTTSCCBCEEEEEECCSS-S-CEEEEEECCBSTTSCT
T ss_pred             eEEEEEecCCCCCEEEEEEEECCCC-C-CceeEEEEEEHHHcCC
Confidence            9999999874 67999999999987 5 9999999999999864

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.26  E-value=8.8e-12  Score=145.40  Aligned_cols=112  Identities=28%  Similarity=0.502  Sum_probs=97.9

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEE-----CCeEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP~  556 (726)
                      .|+|.++..+.                .+.|.|+|.+|++|+++|..|.+||||++.+     ...+.+|+++++++||.
T Consensus       160 ~g~i~~~~~~~----------------~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~  223 (674)
T 3pfq_A          160 RGRIYIQAHID----------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPE  223 (674)
T ss_dssp             SCEEEEEEEEC----------------SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCE
T ss_pred             cccccccceec----------------cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCC
Confidence            57777776542                4789999999999999999999999999999     34678999999999999


Q ss_pred             eeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872          557 WHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  610 (726)
Q Consensus       557 wne~~~f~v~----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  610 (726)
                      |||+|.|.+.    ...|.++|||+|.+++|++||++.+++.++.... .+.|+.|.+
T Consensus       224 wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls  280 (674)
T 3pfq_A          224 WNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLS  280 (674)
T ss_dssp             EEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBC
T ss_pred             ccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeecc
Confidence            9999999984    3569999999999999999999999999986654 589999854

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.22  E-value=6.6e-11  Score=135.44  Aligned_cols=112  Identities=19%  Similarity=0.274  Sum_probs=93.6

Q ss_pred             ccEEEEEEEEeecCCCCCC--CCCCCcEEEEEE-C----CeEeecccc-CC-CCCceeeEEEEEeeCC-ceeEEEEEEee
Q 004872          378 GRKINVTVVEGKDLMPKDK--SGKCDPYVKLQY-G----KIVQRTRTA-HS-PNHVWNQKFELDEIGG-GECLMVKCYNE  447 (726)
Q Consensus       378 ~~~L~V~V~~a~~L~~~d~--~g~~dpyv~v~l-g----~~~~kT~~~-~t-~nP~wne~f~f~v~~~-~~~l~i~V~d~  447 (726)
                      .+.|.|+|++|++|+..+.  .+.+||||+|.+ +    ...+||+++ ++ .||+|||+|.|.+..+ ...|.|+|||+
T Consensus       496 ~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~  575 (624)
T 1djx_A          496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY  575 (624)
T ss_dssp             CEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred             ceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEEc
Confidence            3589999999999998873  689999999999 4    368999999 76 9999999999998765 46899999999


Q ss_pred             cCC-CCcceEEEEEEccccccCCeeeeeeeccccc-----cceeEEEEEEE
Q 004872          448 EIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEAT  492 (726)
Q Consensus       448 ~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~~~~  492 (726)
                      +.. ++++||++.++|..+..+   .+|++|.+..     .|.|.+.+++.
T Consensus       576 D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          576 DSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             CSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence            988 899999999999999654   3689997642     35666666654

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.21  E-value=1.2e-12  Score=146.04  Aligned_cols=98  Identities=19%  Similarity=0.406  Sum_probs=14.4

Q ss_pred             CccEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-Eeecccc-CC---CCCceeeEEEEEeeCCceeEEEEEEee-c--
Q 004872          377 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKI-VQRTRTA-HS---PNHVWNQKFELDEIGGGECLMVKCYNE-E--  448 (726)
Q Consensus       377 ~~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~-~~kT~~~-~t---~nP~wne~f~f~v~~~~~~l~i~V~d~-~--  448 (726)
                      ..+.|.|+|++|++|+.++     ||||++++++. ..||+++ ++   .||.|||+|.|.+.+....|.|+|||+ +  
T Consensus         9 ~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~   83 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKK   83 (483)
T ss_dssp             EEECC--------------------------------------------------CCEECC-------------------
T ss_pred             eccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCcc
Confidence            4458999999999999876     99999999654 7799999 88   999999999998765568899999994 4  


Q ss_pred             -CC-CCcceEEEEEEccccccCCeeeeeeeccc
Q 004872          449 -IF-GDENMGSARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       449 -~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                       .. +|++||.+.+++.++..+...+.||+|.+
T Consensus        84 ~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~  116 (483)
T 3bxj_A           84 RKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL  116 (483)
T ss_dssp             -----------------------CCEECC----
T ss_pred             ccCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence             23 79999999999999987777889999953

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.09  E-value=3.4e-10  Score=131.86  Aligned_cols=104  Identities=23%  Similarity=0.331  Sum_probs=85.8

Q ss_pred             CceEEEEEEEEeecCcccccCCCCccEEEEEECC-------eEEEeEeeeC-CCCCeeeeE-EEEe-cC---CCeEEEEE
Q 004872          508 GNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-------LKKRTKVIFK-TLNPQWHQT-LEFP-DD---GSPLTLHV  574 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~v~~~-t~nP~wne~-~~f~-v~---~~~l~i~V  574 (726)
                      ..+.|+|+|++|++|+..    .+||||+|.+.+       .+++|+++++ ++||+|||+ |.|. +.   -..|+|+|
T Consensus       648 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V  723 (816)
T 3qr0_A          648 VAGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIV  723 (816)
T ss_dssp             CCEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred             cceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEE
Confidence            358899999999999853    689999999954       5679999986 699999998 9998 63   36799999


Q ss_pred             EECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC-----CeEEEEEEEE
Q 004872          575 RDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  622 (726)
Q Consensus       575 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~  622 (726)
                      ||++    +++||++.+||+.+..|.   ++++|.+..     .+.|.+.+++
T Consensus       724 ~D~d----ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~~~atLfv~i~~  769 (816)
T 3qr0_A          724 SEEN----GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPLGLASVFAHIVA  769 (816)
T ss_dssp             EETT----SCEEEEEEEESTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             EecC----CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCCCceEEEEEEEE
Confidence            9985    789999999999998874   577776533     2677777777

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.02  E-value=5.5e-10  Score=130.80  Aligned_cols=103  Identities=15%  Similarity=0.262  Sum_probs=85.0

Q ss_pred             ceEEEEEEEEeecCcccccCCCCccEEEEEECC------eEEEeEeeeC-CCCCeeee-EEEEe-cC---CCeEEEEEEE
Q 004872          509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTKVIFK-TLNPQWHQ-TLEFP-DD---GSPLTLHVRD  576 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~v~~~-t~nP~wne-~~~f~-v~---~~~l~i~V~d  576 (726)
                      ...|+|+|++|++|+..    .+||||+|.+.+      .+++|+++++ ++||+||| +|.|. +.   -..|+|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            45899999999999853    689999999954      3579999986 59999999 69998 63   3679999999


Q ss_pred             CCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC-----CeEEEEEEEE
Q 004872          577 HNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  622 (726)
Q Consensus       577 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~  622 (726)
                      +|    +++||++.+||..|..+.   ++++|.+..     .|.|.+.+++
T Consensus       800 ~d----ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l~~atLfv~i~~  843 (885)
T 3ohm_B          800 EG----GKFVGHRILPVSAIRSGY---HYVCLRNEANQPLCLPALLIYTEA  843 (885)
T ss_dssp             TT----TEEEEEEEEETTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CC----ccEEeeEEEEHHHcCCCc---eEEEecCCCCCccCceEEEEEEEE
Confidence            87    789999999999998764   567775432     3788888887

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.02  E-value=8.5e-10  Score=129.29  Aligned_cols=105  Identities=15%  Similarity=0.244  Sum_probs=83.9

Q ss_pred             CCceEEEEEEEEeecCcccccCCCCccEEEEEECC------eEEEeE-eeeC-CCCCeeee-EEEE-ecC---CCeEEEE
Q 004872          507 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD------LKKRTK-VIFK-TLNPQWHQ-TLEF-PDD---GSPLTLH  573 (726)
Q Consensus       507 ~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~-v~~~-t~nP~wne-~~~f-~v~---~~~l~i~  573 (726)
                      ...+.|.|+|++|++|+.    +.+||||+|.+.+      +++||+ ++++ ++||+||| +|.| .+.   -..|+|+
T Consensus       675 ~~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~  750 (799)
T 2zkm_X          675 VVATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVA  750 (799)
T ss_dssp             TTCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEE
T ss_pred             eeeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEE
Confidence            346899999999999985    4789999999932      367999 7765 69999999 7999 763   3579999


Q ss_pred             EEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCC-----CeEEEEEEEE
Q 004872          574 VRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  622 (726)
Q Consensus       574 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~  622 (726)
                      |||+|    +++||++.+||+.+..+.   +|++|.+..     .+.|.+.+++
T Consensus       751 V~D~d----~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~~~~~Lfv~i~~  797 (799)
T 2zkm_X          751 VMEEG----NKFLGHRIIPINALNSGY---HHLCLHSESNMPLTMPALFIFLEM  797 (799)
T ss_dssp             EEETT----TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEEEEEEEEEEEEE
T ss_pred             EEEeC----CCccceEeeehhhcCCCc---EEEeccCCCCCCCCceEEEEEEEE
Confidence            99997    789999999999998764   577775432     2566666655

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.99  E-value=7.5e-10  Score=129.05  Aligned_cols=105  Identities=30%  Similarity=0.489  Sum_probs=92.1

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEEeeCC--ceeEEEEEEeecCC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~  450 (726)
                      +.|.|++.+|++|..+|.+|.+||||++++     +..+++|+++ ++.||.|||.|.|.+...  ...|.|+|||++..
T Consensus       172 ~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~  251 (674)
T 3pfq_A          172 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT  251 (674)
T ss_dssp             SEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSS
T ss_pred             ceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecccc
Confidence            489999999999999999999999999999     3458899999 999999999999997653  56799999999988


Q ss_pred             -CCcceEEEEEEccccccCCeeeeeeeccccccce
Q 004872          451 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE  484 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~  484 (726)
                       +|++||++.+++.++.... ...|+.|.....|+
T Consensus       252 ~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~~g~  285 (674)
T 3pfq_A          252 SRNDFMGSLSFGISELQKAG-VDGWFKLLSQEEGE  285 (674)
T ss_dssp             SCCEECCBCCCBTTHHHHCC-EEEEEECBCTTGGG
T ss_pred             cccccccccccchhhhccCC-cccceeecccccce
Confidence             8999999999999997655 47999998755444

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.91  E-value=1.5e-08  Score=88.51  Aligned_cols=108  Identities=14%  Similarity=0.232  Sum_probs=84.5

Q ss_pred             ceEEEEEEEEeecCcccccCCCCccEEEEEECCeE----EEe-EeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCC
Q 004872          509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK----KRT-KVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLA  582 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~----~kT-~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~  582 (726)
                      ..-|||.+.++.--+-.......||||.|.+....    .+| ...++|..|+|||.|.-.+. ...|.|.||+...   
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~Gr~l~i~Vfh~a~---   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAAE---   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTTCEEEEEEEEETT---
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCCEEEEEEEEcCCC---
Confidence            45677777666532222233468999999996643    255 66778999999999999985 7899999996443   


Q ss_pred             CCeeEEEEEEccccC-----CCCceeeEEecCCCCCeEEEEEEEE
Q 004872          583 SSSIGDCVVEYQRLP-----PNQMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       583 d~~lG~~~i~l~~l~-----~~~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                       +|++.|+|++.+|.     .+...+.|++|++  .|.|++.++|
T Consensus        82 -~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--~Gkl~~~i~~  123 (126)
T 1yrk_A           82 -EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMSVQY  123 (126)
T ss_dssp             -EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--SCEEEEEEEE
T ss_pred             -CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEE
Confidence             79999999999986     4557789999996  8999999998

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.86  E-value=2.8e-08  Score=87.88  Aligned_cols=109  Identities=17%  Similarity=0.275  Sum_probs=86.2

Q ss_pred             CceEEEEEEEEeecCcccc-cCCCCccEEEEEECCe----EEEe-EeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCC
Q 004872          508 GNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYGDL----KKRT-KVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNAL  580 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~~~----~~kT-~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~  580 (726)
                      ..+-|||.+.++.--+-.. .....||||.|.+...    ..+| ..+++|..|+|||.|.-.+. ...|.|.||+... 
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~Gr~l~i~Vfh~a~-   86 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKGRVMQIIVKGKNV-   86 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSSCEEEEEEECSSC-
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECCeEEEEEEEcCCC-
Confidence            3467888887766433221 2336899999999764    2577 66777999999999999985 7899999995433 


Q ss_pred             CCCCeeEEEEEEccccC-----CCCceeeEEecCCCCCeEEEEEEEE
Q 004872          581 LASSSIGDCVVEYQRLP-----PNQMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       581 ~~d~~lG~~~i~l~~l~-----~~~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                         +|++.|+|++.+|.     .+...+.|++|+.  .|.|++.++|
T Consensus        87 ---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--~Gkl~v~i~~  128 (138)
T 2enj_A           87 ---DLISETTVELYSLAERCRKNNGKTEIWLELKP--QGRMLMNARY  128 (138)
T ss_dssp             ---SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--SCEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEE
Confidence               79999999999996     4557799999996  8999999998

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.73  E-value=2.4e-07  Score=80.88  Aligned_cols=107  Identities=10%  Similarity=0.213  Sum_probs=82.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE----eec-ccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCc
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIV----QRT-RTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDE  453 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~----~kT-~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~  453 (726)
                      -|+|.+.++.--..+......||||.|.++...    .+| .++ +|..|.||+.|.-.+. ....|.|.|++...   +
T Consensus         7 flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a~---~   82 (126)
T 1yrk_A            7 FLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY-EGRVIQIVLMRAAE---E   82 (126)
T ss_dssp             EEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC-TTCEEEEEEEEETT---E
T ss_pred             cEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee-CCEEEEEEEEcCCC---C
Confidence            688888776632222223468999999995432    254 566 9999999999998854 45669999997653   8


Q ss_pred             ceEEEEEEcccccc-----CCeeeeeeeccccccceeEEEEEEE
Q 004872          454 NMGSARVNLEGLVE-----GSVRDIWVPLEKVNTGELRLQIEAT  492 (726)
Q Consensus       454 ~iG~~~i~L~~l~~-----~~~~~~w~~L~~~~~G~I~l~~~~~  492 (726)
                      +++.+.+.+.+|..     +...+.|+.|++  .|+|++.++|.
T Consensus        83 fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--~Gkl~~~i~~~  124 (126)
T 1yrk_A           83 PVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMSVQYF  124 (126)
T ss_dssp             EEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--SCEEEEEEEEE
T ss_pred             eeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEe
Confidence            99999999999983     346689999997  79999999886

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=98.70  E-value=5.4e-08  Score=114.04  Aligned_cols=105  Identities=24%  Similarity=0.320  Sum_probs=84.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eEeecccc-C-CCCCceee-EEEEE-eeCC-ceeEEEEEEee
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK------IVQRTRTA-H-SPNHVWNQ-KFELD-EIGG-GECLMVKCYNE  447 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~------~~~kT~~~-~-t~nP~wne-~f~f~-v~~~-~~~l~i~V~d~  447 (726)
                      ..|.|+|++|++|+.+    .+||||+|.+.+      .++||+++ + +.||+||| +|.|. +..+ -..|+|+|||+
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~  800 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE  800 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence            3799999999999853    589999999932      35899999 5 59999999 69998 5444 56899999998


Q ss_pred             cCCCCcceEEEEEEccccccCCeeeeeeeccccc-----cceeEEEEEEEE
Q 004872          448 EIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEATR  493 (726)
Q Consensus       448 ~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~~~~~  493 (726)
                      +   +++||++.++|..|..+   .++++|.+..     .|.|.+.+.+..
T Consensus       801 d---ddfiG~~~lpL~~L~~G---yR~vpL~~~~g~~l~~atLfv~i~~~~  845 (885)
T 3ohm_B          801 G---GKFVGHRILPVSAIRSG---YHYVCLRNEANQPLCLPALLIYTEASD  845 (885)
T ss_dssp             T---TEEEEEEEEETTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             C---ccEEeeEEEEHHHcCCC---ceEEEecCCCCCccCceEEEEEEEEEe
Confidence            7   78999999999998654   3567776542     477888887774

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.69  E-value=6.5e-08  Score=113.42  Aligned_cols=104  Identities=22%  Similarity=0.332  Sum_probs=81.4

Q ss_pred             ccEEEEEEEEeecCCCCCCCCCCCcEEEEEE-C---C--eEeecc-cc--CCCCCceee-EEEE-EeeCC-ceeEEEEEE
Q 004872          378 GRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-G---K--IVQRTR-TA--HSPNHVWNQ-KFEL-DEIGG-GECLMVKCY  445 (726)
Q Consensus       378 ~~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-g---~--~~~kT~-~~--~t~nP~wne-~f~f-~v~~~-~~~l~i~V~  445 (726)
                      .+.|.|+|++|++|+.    +.+||||+|.+ |   .  .++||+ ++  ++.||+||| +|.| .+..+ -..|.|.||
T Consensus       677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~  752 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM  752 (799)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred             eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence            4589999999999985    46899999999 4   1  368999 77  569999999 6999 66544 458999999


Q ss_pred             eecCCCCcceEEEEEEccccccCCeeeeeeecccccc-----ceeEEEEEE
Q 004872          446 NEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNT-----GELRLQIEA  491 (726)
Q Consensus       446 d~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~-----G~I~l~~~~  491 (726)
                      |++   +++||++.++|..|..+   .+|++|.+...     +.|.+.+.+
T Consensus       753 D~d---~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~~~~~~Lfv~i~~  797 (799)
T 2zkm_X          753 EEG---NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPALFIFLEM  797 (799)
T ss_dssp             ETT---TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred             EeC---CCccceEeeehhhcCCC---cEEEeccCCCCCCCCceEEEEEEEE
Confidence            986   78999999999999653   46788866432     445555544

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=98.69  E-value=9.1e-08  Score=111.54  Aligned_cols=105  Identities=17%  Similarity=0.252  Sum_probs=84.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEeecccc-C-CCCCceeeE-EEEE-eeCC-ceeEEEEEEe
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-------IVQRTRTA-H-SPNHVWNQK-FELD-EIGG-GECLMVKCYN  446 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-------~~~kT~~~-~-t~nP~wne~-f~f~-v~~~-~~~l~i~V~d  446 (726)
                      +.|.|+|++|++|+.+    .+||||+|.+.+       .++||+++ + +.||+|||+ |.|. +..+ -..|+|.|||
T Consensus       650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D  725 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE  725 (816)
T ss_dssp             EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence            4899999999999753    689999999932       57899998 4 699999998 9998 6544 4689999999


Q ss_pred             ecCCCCcceEEEEEEccccccCCeeeeeeeccccc-----cceeEEEEEEEE
Q 004872          447 EEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEATR  493 (726)
Q Consensus       447 ~~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~~~~~  493 (726)
                      ++   +++||++.++|..|..+   .++++|.+..     .+.|.+.+....
T Consensus       726 ~d---ddfiG~~~ipL~~L~~G---yR~vpL~~~~g~~~~~atLfv~i~~~~  771 (816)
T 3qr0_A          726 EN---GKFIGHRVMPLDGIKPG---YRHVPLRNESNRPLGLASVFAHIVAKD  771 (816)
T ss_dssp             TT---SCEEEEEEEESTTCCCE---EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             cC---CCeeeEEEEEHHHcCCc---ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence            85   78999999999999764   3567887643     256666666653

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.59  E-value=3.9e-07  Score=80.62  Aligned_cols=107  Identities=12%  Similarity=0.217  Sum_probs=83.3

Q ss_pred             EEEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-E---eec-ccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCCCC
Q 004872          380 KINVTVVEGKDLMPKD-KSGKCDPYVKLQYGKI-V---QRT-RTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGD  452 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d-~~g~~dpyv~v~lg~~-~---~kT-~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d  452 (726)
                      -|+|.+.++.--+... .....||||.|.++.. .   .+| .++ +|..|.||+.|.-.+. ....|.|.|++..   .
T Consensus        11 flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a---~   86 (138)
T 2enj_A           11 FLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN-KGRVMQIIVKGKN---V   86 (138)
T ss_dssp             CEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC-SSCEEEEEEECSS---C
T ss_pred             ceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE-CCeEEEEEEEcCC---C
Confidence            6888887776433322 2346899999999543 3   566 556 8999999999998854 4566999999665   3


Q ss_pred             cceEEEEEEcccccc-----CCeeeeeeeccccccceeEEEEEEE
Q 004872          453 ENMGSARVNLEGLVE-----GSVRDIWVPLEKVNTGELRLQIEAT  492 (726)
Q Consensus       453 ~~iG~~~i~L~~l~~-----~~~~~~w~~L~~~~~G~I~l~~~~~  492 (726)
                      ++++.+.+.+.+|..     +...+.|+.|++  .|+|++.++|.
T Consensus        87 ~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--~Gkl~v~i~~~  129 (138)
T 2enj_A           87 DLISETTVELYSLAERCRKNNGKTEIWLELKP--QGRMLMNARYF  129 (138)
T ss_dssp             SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--SCEEEEEEEEC
T ss_pred             CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEE
Confidence            899999999999984     346689999997  79999999986

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=93.44  E-value=0.74  Score=41.94  Aligned_cols=122  Identities=16%  Similarity=0.214  Sum_probs=84.8

Q ss_pred             CCCCCceEEEEEEEEeecCcccc-cCCCCccEEEEEEC---CeEEEeEeeeCCCCCeeeeEEEEecC----------CCe
Q 004872          504 NIGSGNGWIELVIVEARDLVAAD-LRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQWHQTLEFPDD----------GSP  569 (726)
Q Consensus       504 ~~~~~~g~L~v~v~~a~~L~~~d-~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~wne~~~f~v~----------~~~  569 (726)
                      ...+..+.+.++|.++.=-+..- ..+..+|+.-+.+.   -+...|.++. ..+|.+|-+..|.|.          ...
T Consensus        12 ~l~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~   90 (156)
T 2yrb_A           12 HLERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNT   90 (156)
T ss_dssp             SCCSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCC
T ss_pred             hccCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCC
Confidence            34577799999999998433221 13455776666663   3566666665 789999999888873          458


Q ss_pred             EEEEEEECCCCCCCCeeEEEEEEccccCCCCc-eeeEEecCC-----CCCeEEEEEEEEEecCc
Q 004872          570 LTLHVRDHNALLASSSIGDCVVEYQRLPPNQM-ADKWIPLQG-----VRKGEIHVLITRKVPEL  627 (726)
Q Consensus       570 l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~-~~~w~~L~~-----~~~G~i~l~l~~~~p~~  627 (726)
                      +.+++..... +.-+.||.+.|+|.++...+. ...-.+|.+     ..-|.|.+.++++.|-.
T Consensus        91 l~lELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~Pi~  153 (156)
T 2yrb_A           91 ITLEVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRVSGP  153 (156)
T ss_dssp             EEEEEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEECCC
T ss_pred             EEEEEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEecccC
Confidence            9999987643 345699999999999864332 344456653     24599999999877643

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=89.25  E-value=3.6  Score=39.65  Aligned_cols=55  Identities=16%  Similarity=0.178  Sum_probs=42.1

Q ss_pred             EEeeeecCCCCCCcccceeEEEEecC---CceEEEEEEEeCCCCCC---cceeEEEEEece
Q 004872          240 LTRRTDARPGSDPRWDSMFNMVLHEE---TGTVRFNLYECIPGHVK---YDYLTSCEVKMK  294 (726)
Q Consensus       240 ~~rTt~i~~t~nP~WnEtf~~~v~~~---~~~L~~~V~D~d~~~~~---dd~lG~~~i~L~  294 (726)
                      ..+|.+...+.+|.|+|++-+.+...   ..-|.|.+++......+   +..+|.+.+||-
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            46777888999999999999998654   45899999987643122   247899999883

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=85.25  E-value=3.4  Score=48.87  Aligned_cols=86  Identities=16%  Similarity=0.143  Sum_probs=61.8

Q ss_pred             ceEEEEEEEEeecCcccccCCCCccEEEEEE--CCe----EEEeEeeeCCCCCeeeeEEEEec------CCCeEEEEEEE
Q 004872          509 NGWIELVIVEARDLVAADLRGTSDPYVKVQY--GDL----KKRTKVIFKTLNPQWHQTLEFPD------DGSPLTLHVRD  576 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~~----~~kT~v~~~t~nP~wne~~~f~v------~~~~l~i~V~d  576 (726)
                      ...++|+|..+.++...   ...+-||.+.+  |++    ...|..+.-..+|.|||.+.|++      .+..|.|+||+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            46899999999998754   35688888776  553    34566566577899999999986      26889999998


Q ss_pred             CCCC--C----------CCCeeEEEEEEccccC
Q 004872          577 HNAL--L----------ASSSIGDCVVEYQRLP  597 (726)
Q Consensus       577 ~d~~--~----------~d~~lG~~~i~l~~l~  597 (726)
                      ...-  +          .+..||.+.++|-+..
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCTT
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECCc
Confidence            6431  1          2458999999987643

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=82.20  E-value=13  Score=33.77  Aligned_cols=112  Identities=11%  Similarity=0.084  Sum_probs=71.8

Q ss_pred             EEEEEEEEeecCCCCC--CCCCCCc--EEEEEE-CCeEeeccccCCCCCceeeEEEEEeeCC--------ceeEEEEEEe
Q 004872          380 KINVTVVEGKDLMPKD--KSGKCDP--YVKLQY-GKIVQRTRTAHSPNHVWNQKFELDEIGG--------GECLMVKCYN  446 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d--~~g~~dp--yv~v~l-g~~~~kT~~~~t~nP~wne~f~f~v~~~--------~~~l~i~V~d  446 (726)
                      .+.+.|.++. +.+..  ..+..+|  ||.+.+ +-+.+.|.+....+|.||-+-.|.+..+        ...+.+++..
T Consensus        19 lfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhq   97 (156)
T 2yrb_A           19 LFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQ   97 (156)
T ss_dssp             EEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEESSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEE
T ss_pred             EEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeecccccCCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEE
Confidence            6777777765 21100  0122344  555555 5567777766888999999988887543        3578999988


Q ss_pred             ecCCCCcceEEEEEEccccccCCe-eeeeeecccc-----ccceeEEEEEEE
Q 004872          447 EEIFGDENMGSARVNLEGLVEGSV-RDIWVPLEKV-----NTGELRLQIEAT  492 (726)
Q Consensus       447 ~~~~~d~~iG~~~i~L~~l~~~~~-~~~w~~L~~~-----~~G~I~l~~~~~  492 (726)
                      .....-..||.+.|+|.++.+... .....+|.+.     .-|.|...+++.
T Consensus        98 a~g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~  149 (156)
T 2yrb_A           98 AYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLR  149 (156)
T ss_dssp             ECSSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEE
T ss_pred             eeCCCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEe
Confidence            765456789999999999986542 2233355442     235666666554

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=81.67  E-value=17  Score=35.00  Aligned_cols=52  Identities=10%  Similarity=0.004  Sum_probs=38.4

Q ss_pred             Eeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-----CCcceEEEEEEcc
Q 004872          412 VQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-----GDENMGSARVNLE  463 (726)
Q Consensus       412 ~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-----~d~~iG~~~i~L~  463 (726)
                      .++|.+. ++.+|.|+|++.+.+...   ...|.|.+++....     .+..+|-+.++|-
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            6788888 999999999999997763   67899998875432     2235666666554

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=80.39  E-value=3.5  Score=48.79  Aligned_cols=86  Identities=12%  Similarity=0.220  Sum_probs=56.8

Q ss_pred             cccEEEEEEEeecCCCCCCCCCCCcccccccCCCCccccccCCCCcCcEEEEEE--cc-----EEeeeecCCCCCCcccc
Q 004872          184 VGGIVYVRVISASKLSRSSLRGSPSRRQQNYSADSSLEEHYEDKDLTTFVEIEL--EE-----LTRRTDARPGSDPRWDS  256 (726)
Q Consensus       184 ~~GvL~V~v~~A~~L~~~~~~g~~~~~~~~~~~dpy~~~~~~~k~~DPyV~v~~--g~-----~~rTt~i~~t~nP~WnE  256 (726)
                      ...-++|+|.++.++...+.                         .+=||++.+  |.     ...|+.+.-..+|.|||
T Consensus       215 ~~~~f~i~i~~~~~~~~~~~-------------------------~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne  269 (940)
T 2wxf_A          215 LEQPFSIELIEGRKVNADER-------------------------MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQ  269 (940)
T ss_dssp             CCSEEEEEEEEEECCCC----------------------------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEE
T ss_pred             cCCceEEEEEEecccCCCCC-------------------------ceEEEEEEEEECCEEccCceecccccCCCCcccce
Confidence            34679999999999875421                         155888777  42     22333344467899999


Q ss_pred             eeEEEEe--cC--CceEEEEEEEeCCC--C-------C--CcceeEEEEEece
Q 004872          257 MFNMVLH--EE--TGTVRFNLYECIPG--H-------V--KYDYLTSCEVKMK  294 (726)
Q Consensus       257 tf~~~v~--~~--~~~L~~~V~D~d~~--~-------~--~dd~lG~~~i~L~  294 (726)
                      .+.|.+.  +.  +..|.|.||+....  +       .  .+..||-+.++|=
T Consensus       270 ~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lF  322 (940)
T 2wxf_A          270 RLEFDISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPIAWANLMLF  322 (940)
T ss_dssp             EEEEEEEGGGCCTTCEEEEEEEEEC----------------CEEEEEEEEESB
T ss_pred             EEEcccccccCCcccEEEEEEEEecCCccCccccccccccccceEEEEeeeEE
Confidence            9888753  44  67999999997431  0       0  1348888888873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	726
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	1e-20
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-15
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	4e-18
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	3e-15
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-17
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-15
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	3e-16
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-15
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-10
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-15
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-13
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	7e-15
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	4e-11
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	8e-15
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	9e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	1e-14
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	3e-11
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	5e-14
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	4e-13
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	1e-12
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	8e-09
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-10
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	9e-09
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-10
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	2e-10
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	1e-09
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-07
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	1e-09
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-07
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	3e-09
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	5e-08
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	1e-08
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	4e-08
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	3e-08
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-07
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	7e-07
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	0.003

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.9 bits (212), Expect = 1e-20
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 377 TGRKINVTVVEGKDLMP---KDKSGKCDPYVKLQYGKIVQRTRTAH----SPNHVWNQKF 429
           +  K  V V+    +      D     DPYV+L         +         N VWN+ F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 430 ELDEIGG-GECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQ 488
           E          L +   +     DE +G+A   +  +  G  +++     +V    L + 
Sbjct: 61  EFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 120

Query: 489 IE 490
           +E
Sbjct: 121 LE 122

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 512 IELVIVEARDL---VAADLRGTSDPYVKVQYGDL---KKRTKVIFKTLNPQWHQTLEF-- 563
             +V++ A  +      D+  T DPYV++        +KRT+     +NP W++T EF  
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 564 -PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 621
            P+  + L + + D N  +   ++G        +   +  +       V +  + + + 
Sbjct: 65  DPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLE 122

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.0 bits (194), Expect = 4e-18
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 512 IELVIVEARDLVAADLRGTSDPYVKVQYGDLKK-----RTKVIFKTLNPQWHQTLEF--- 563
           + +V+ +A++LV  D  G SDPYVK++     K     +TK I  +LNP+W++T  F   
Sbjct: 17  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 76

Query: 564 -PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE 615
             D    L++ + D +    +  +G        L    + D W  L    +GE
Sbjct: 77  ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEGE 128

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.5 bits (172), Expect = 3e-15
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 374 ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAH-SPNHVWNQ 427
                  + V V + K+L+P D +G  DPYVKL+       +  Q+T+T   S N  WN+
Sbjct: 10  AHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNE 69

Query: 428 KFELD--EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE 484
            F     E      L V+ ++ ++   ++ MGS    +  L +  V D W  L     GE
Sbjct: 70  TFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEGE 128

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 77.1 bits (189), Expect = 2e-17
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 369 GSSNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNH--VWN 426
           GSS      G  + V +V  K L   D     DPYV+L      Q++  A        WN
Sbjct: 1   GSSGSSGPHG-TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWN 59

Query: 427 QKFELDEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLV-EGSVRDIWVPLEK--VNT 482
           + F      G   L  K +++++   D+ +G A + LE +  EGS+      + K     
Sbjct: 60  ETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYK 119

Query: 483 GELRLQIE 490
           GE+ + + 
Sbjct: 120 GEIWVALS 127

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.1 bits (176), Expect = 1e-15
 Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 8/129 (6%)

Query: 499 GSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVI-FKTLNPQW 557
           GS G +    +G +E+V+V A+ L  AD     DPYV++      +++ V       P+W
Sbjct: 1   GSSGSS--GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEW 58

Query: 558 HQTLEF--PDDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPLQ--GVR 612
           ++T  F   +  + L   + D +      ++G+  +  + +     +      +      
Sbjct: 59  NETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEY 118

Query: 613 KGEIHVLIT 621
           KGEI V ++
Sbjct: 119 KGEIWVALS 127

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 3e-16
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP--DDG 567
           G +++ +++A DL+AAD  G SDP+  ++ G+ + +T  ++K LNP+W++   FP  D  
Sbjct: 6   GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH 65

Query: 568 SPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ-----GVRKGEIHVLIT 621
             L + V D +       +G   +    +   Q       L+        KG I++ + 
Sbjct: 66  DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMD 122

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 2e-15
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPN-HVWNQKFELDEIGGGE 438
            + V V++  DL+  D SGK DP+  L+ G    +T T +      WN+ F        +
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 66

Query: 439 CLMVKCYNEE-IFGDENMGSARVNLEGLVEGSVRDI---WVPLEKVNTGELRLQIE 490
            L V  ++E+     + +G   + L  + +G           LE+   G + L+++
Sbjct: 67  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 122

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 1e-15
 Identities = 18/128 (14%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGE 438
           ++ +TV+  K    K       PYV++      ++T    ++ +  W Q   +  +    
Sbjct: 7   QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVI-VTPVS 65

Query: 439 CLMVKCYNEEIFG-DENMGSARVNLEGLVE---GSVRDIWVPLE-------KVNTGELRL 487
            L  + ++ +    D  +G+A +++   ++     + ++ V L+           G+L +
Sbjct: 66  KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSI 125

Query: 488 QIEATRVD 495
            ++  +++
Sbjct: 126 CLDGLQLE 133

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 1e-10
 Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 11/125 (8%)

Query: 507 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFP-D 565
           +    +++ ++ A+            PYV+V      K+T+    T +P+W Q L     
Sbjct: 3   TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT 62

Query: 566 DGSPLTLHVRDHNALLASSSIGDCVVEYQRL---PPNQMADKWIPLQ-------GVRKGE 615
             S L   V  H  L +   +G   ++          ++ +  + LQ           G+
Sbjct: 63  PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGD 122

Query: 616 IHVLI 620
           + + +
Sbjct: 123 LSICL 127

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.1 bits (176), Expect = 2e-15
 Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 22/142 (15%)

Query: 476 PLEKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYV 535
           P E+   G+L+  ++                  N  + + I++A +L A D+ GTSDPYV
Sbjct: 14  PKEEEKLGKLQYSLDYD--------------FQNNQLLVGIIQAAELPALDMGGTSDPYV 59

Query: 536 KVQ---YGDLKKRTKVIFKTLNPQWHQTLEFP-----DDGSPLTLHVRDHNALLASSSIG 587
           KV        K  TKV  KTLNP +++   F        G  L + V D +       IG
Sbjct: 60  KVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIG 119

Query: 588 DCVVEYQRLPPNQMADKWIPLQ 609
           +  V    +    + ++W  LQ
Sbjct: 120 EFKVPMNTVDFGHVTEEWRDLQ 141

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.9 bits (160), Expect = 2e-13
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 379 RKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTAH---SPNHVWNQKFELD 432
            ++ V +++  +L   D  G  DPYVK   L   K    T+      +P       F++ 
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 433 EIG-GGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLE 478
               GG+ L++  Y+ + F   + +G  +V +  +  G V + W  L+
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.8 bits (170), Expect = 7e-15
 Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 21/140 (15%)

Query: 383 VTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMV 442
           V V + K    ++K    + YV L+   +   T         W Q F  +       L V
Sbjct: 6   VGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTV 62

Query: 443 KCYNEEIFGDENMGSARVNLEGLV--EGSVRDIWVPLEKVNTGELRLQIEATRVDDNEGS 500
           + +N+ +  D  +G+  + L  +          W+ L+                     +
Sbjct: 63  EVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS----------------QAIMA 106

Query: 501 RGQNIGSGNGWIELVIVEAR 520
             +  G+ +     ++++A 
Sbjct: 107 DSEICGTKDPTFHRILLDAH 126

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.0 bits (142), Expect = 4e-11
 Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 12/108 (11%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEF--PDDGSPLTLH 573
           + +A+   A   +   + YV ++  ++K  T  + +   P W Q   F        LT+ 
Sbjct: 8   VKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRLDLGLTVE 63

Query: 574 VRDHNALLASSSIGDCVVEYQRLP--PNQMADKWIPLQ---GVRKGEI 616
           V +    +  + +G   +  + +     +   +W+ L     +   EI
Sbjct: 64  VWNKGL-IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEI 110

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 8e-15
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 14/111 (12%)

Query: 512 IELVIVEARDLVAADLRGTSDPYVKV-----QYGDLKKRTKVIFKTLNPQWHQTLEFP-- 564
           + + I+ A+DL + +     +PYVK+     +    K+RTK + KTL P+W+QT  +   
Sbjct: 16  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75

Query: 565 ----DDGSPLTLHVRDHNALLASSS--IGDCVVEYQRLPPNQMADKWIPLQ 609
                    L + + D   +    S  +G+ ++E +    +     W  LQ
Sbjct: 76  HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQ 125

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 9e-14
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 14/117 (11%)

Query: 375 SRTGRKINVTVVEGKDLMPKDKSGKCDPYVKL-----QYGKIVQRTRTA-HSPNHVWNQK 428
            + G ++ VT++  KDL  ++     +PYVK+     +  K  +RT+T   +    WNQ 
Sbjct: 10  DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 69

Query: 429 FELDEIGGGE----CLMVKCYNEEIFG---DENMGSARVNLEGLVEGSVRDIWVPLE 478
           F    +   E     L +  +++        E +G   + LE  +       W  L+
Sbjct: 70  FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKLQ 125

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 69.1 bits (168), Expect = 1e-14
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 17/128 (13%)

Query: 509 NGWIELVIVEARDLVAADL-----------RGTSDPYVKVQYGDLK-KRTKVIFKTLNPQ 556
           NG +++ I EA  L                    DPY+ +   D +  +T    KT +P 
Sbjct: 5   NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPA 64

Query: 557 WHQTLEFP-DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP--PNQMADKWIPLQGVRK 613
           WH        +G  + L V     +     + +C ++++ L    ++  + WI L+   +
Sbjct: 65  WHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--E 122

Query: 614 GEIHVLIT 621
           G+++V+I 
Sbjct: 123 GKVYVIID 130

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 59.5 bits (143), Expect = 3e-11
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 380 KINVTVVEGKDLMPKD-----------KSGKCDPYVKLQYGKI-VQRTRTAH-SPNHVWN 426
            + + + E   L P             ++   DPY+ L      + +T T   + +  W+
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 427 QKFELDEIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGS--VRDIWVPLEKVNTGE 484
            +F  D   G +  +   ++  I  D+ + +  +  E L++      + W+ LE    G+
Sbjct: 67  DEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGK 124

Query: 485 LRLQIEAT 492
           + + I+ +
Sbjct: 125 VYVIIDLS 132

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.6 bits (164), Expect = 5e-14
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 36/148 (24%)

Query: 482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQ--- 538
           TGE++LQI                    G + + I++AR+LV  D  G SDP+VKV    
Sbjct: 6   TGEIQLQINYDL----------------GNLIIHILQARNLVPRDNNGYSDPFVKVYLLP 49

Query: 539 -----------YGDLKKRTKVIFKTLNPQWHQTLEFPD------DGSPLTLHVRDHNALL 581
                        + K+RTK + K+LNP+W+QT+ +            L + V D++   
Sbjct: 50  GRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS 109

Query: 582 ASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
           ++  +G+ +++           +W PL+
Sbjct: 110 SNDFLGEVLIDLSSTSHLDNTPRWYPLK 137

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.9 bits (157), Expect = 4e-13
 Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 21/138 (15%)

Query: 363 SQQSLSGSSNF-ISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ-------------- 407
           +   ++G     I+     + + +++ ++L+P+D +G  DP+VK+               
Sbjct: 1   ASHPITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNA 60

Query: 408 YGKIVQRTRTAH-SPNHVWNQKFELDEIGGGEC----LMVKCYNEEIFG-DENMGSARVN 461
             +  +RT+    S N  WNQ      I   +     L V  ++ + F  ++ +G   ++
Sbjct: 61  SAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLID 120

Query: 462 LEGLVEGSVRDIWVPLEK 479
           L           W PL++
Sbjct: 121 LSSTSHLDNTPRWYPLKE 138

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.2 bits (153), Expect = 1e-12
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 515 VIVEARDL-VAADLRGTSDPYVKVQYGDL-----KKRTKVIFKTLNPQWHQTLEFPDDGS 568
           +   + +L         S P+  V+  +       K       T+ P+W  T +      
Sbjct: 7   ISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG 66

Query: 569 P-LTLHVRDHNALLAS-SSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLIT 621
             + + +        S  ++G  V+  +    N  A+ W+ LQ   + ++ + + 
Sbjct: 67  RVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQ 119

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.1 bits (124), Expect = 8e-09
 Identities = 11/118 (9%), Positives = 37/118 (31%), Gaps = 11/118 (9%)

Query: 380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSPNHV-WNQKFELD- 432
           +I+    E   L  + +     P+  ++          +         +  W   F+   
Sbjct: 6   RISFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI 63

Query: 433 EIGGGECLMVKCYNEEIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIE 490
             G    +++    E+   +  +G + +           + W+ L+     ++ + ++
Sbjct: 64  YEGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMCVQ 119

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (139), Expect = 1e-10
 Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 22/123 (17%)

Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEF 563
              + +V+++AR L  +D+ G SDPYVKV          KK+T V   T N  +++   F
Sbjct: 14  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 73

Query: 564 P-----DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP------------PNQMADKWI 606
                  +   +   V D      +  IG  V+                  P +   KW 
Sbjct: 74  DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWH 133

Query: 607 PLQ 609
            L 
Sbjct: 134 MLC 136

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.4 bits (125), Expect = 9e-09
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYG---KIVQRTRTA---HSPNHVWNQKFE 430
           T   + V V++ + L   D SG  DPYVK+      K + + +T     +PN V+N+ F 
Sbjct: 13  TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFV 72

Query: 431 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEG 468
            D   E      +     + E    +E +G   +       G
Sbjct: 73  FDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSG 114

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.1 bits (137), Expect = 2e-10
 Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 14/120 (11%)

Query: 379 RKINVTVVEGKDL--MPKDKSGKCDPYVKLQY-----GKIVQRTRTAHSP--NHVWNQKF 429
            ++ V ++ G+ L  + K+K+   DP V ++          ++T    +   N  W+ +F
Sbjct: 4   ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63

Query: 430 ELD-EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRL 487
           E +  +     +     + +    ++ +G + +    L +G      V L   N  +   
Sbjct: 64  EFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPS 120

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 512 IELVIVEARDL--VAADLRGTSDPYVKVQYGDL-----KKRTKVIFKT-LNPQWHQTLEF 563
           + + I+  + L  V  +     DP V V+   +      ++T VI     NP+W    EF
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 564 P---DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLI 620
                D + +   V D+++   +  IG   +        +   + + L   + G+ H   
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTI---PWNSLKQGYRHVHLLS-KNGDQHPSA 121

Query: 621 T 621
           T
Sbjct: 122 T 122

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 22/129 (17%)

Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLK-----KRTKVIFKTLNPQWHQTLEF 563
            G + +VI+EA++L   D+ G SDPYVK+           K+T +   TLNP ++++  F
Sbjct: 24  AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83

Query: 564 P-----DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLP------------PNQMADKWI 606
                      + + V D++ +  + +IG   V Y                P +   +W 
Sbjct: 84  EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWH 143

Query: 607 PLQGVRKGE 615
            LQ   + +
Sbjct: 144 TLQVEEEVD 152

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.9 bits (113), Expect = 4e-07
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 10/102 (9%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRT---AHSPNHVWNQKFE 430
           T  K+ V ++E K+L   D  G  DPYVK+     GK +++ +T    ++ N  +N+ F 
Sbjct: 23  TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 82

Query: 431 L---DEIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEG 468
                E      ++V   + +  G ++ +G   V        
Sbjct: 83  FEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.8 bits (131), Expect = 1e-09
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 15/124 (12%)

Query: 509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNPQWHQTLEF 563
            G + + I+    L A D  G SDP+VK+          K +T++  KTLNP++++   +
Sbjct: 14  QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY 73

Query: 564 P-----DDGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEI-- 616
                      L + V D++   ++  IG C +        +    W      +  +I  
Sbjct: 74  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKNKDKKIER 131

Query: 617 -HVL 619
            H L
Sbjct: 132 WHQL 135

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 12/113 (10%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQ-----YGKIVQRTRTA-HSPNHVWNQKFE 430
               + V ++    L   D +G  DP+VKL        K   +T+    + N  +N++F 
Sbjct: 13  QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFF 72

Query: 431 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPLEK 479
            D        + L +  ++ +I   ++ +G  ++ +     G     W    K
Sbjct: 73  YDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECLK 123

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 3e-09
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 515 VIVEARDLVAADLRGTSDPYVKVQY----GDLKKRTKVIFKTLNPQWHQTLEFP-----D 565
             +EA      +  G  D YV+       G ++ +T +  + L+  W + L  P      
Sbjct: 31  TRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87

Query: 566 DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQ 609
             + LTL +R  +     S  G+  +          A +W  L+
Sbjct: 88  PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELK 131

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 5e-08
 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 17/133 (12%)

Query: 361 SGSQQSLSGS-----SNFISRTGRKINVTVVEGKDLMPKDKSGKCDPYVKLQY----GKI 411
           SGS  S + +              ++ VT +E       +  G CD YV+       G +
Sbjct: 3   SGSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSV 59

Query: 412 VQRTRTAHSPNH-VWNQKFELD---EIGGGECLMVKCYNEEIFGDEN-MGSARVNLEGLV 466
             +T       H  W +   L    E      L +     + F   +  G  R+ L+G  
Sbjct: 60  EAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS 119

Query: 467 EGSVRDIWVPLEK 479
                  W  L+ 
Sbjct: 120 VPLGAAQWGELKT 132

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.1 bits (124), Expect = 1e-08
 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 28/159 (17%)

Query: 478 EKVNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKV 537
           EK + GEL   +                    G + + I++A +L A DL G SDPYVK 
Sbjct: 2   EKADLGELNFSLCYL--------------PTAGLLTVTIIKASNLKAMDLTGFSDPYVKA 47

Query: 538 QYGD-----LKKRTKVIFKTLNPQWHQTLEFP-----DDGSPLTLHVRDHNALLASSSIG 587
                     K++T +   TLNP +++ L F       +   L++ V D++ +  +  IG
Sbjct: 48  SLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIG 107

Query: 588 DCVVEYQRLPPNQMADKWIPLQGVRKGEI---HVLITRK 623
            C V  +   P+   + W  +    +  +   H L+  K
Sbjct: 108 VCRVGPEAADPHGR-EHWAEMLANPRKPVEHWHQLVEEK 145

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.0 bits (121), Expect = 4e-08
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 377 TGRKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAH------SPNHVWNQKFE 430
           T   + VT+++  +L   D +G  DPYVK       +R +         + N  +N+   
Sbjct: 18  TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77

Query: 431 LD---EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLVEGSVRDIWVPL 477
            D   E      L +   + +  G +E +G  RV  E   +   R+ W  +
Sbjct: 78  FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPE-AADPHGREHWAEM 127

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 379 RKINVTVVEGKDLMPKDKSGKCDPYVK---LQYGKIVQRTRTAH-SPNHVWNQKFELD-- 432
            ++ V +++  DL  KD +G  DPYVK   L   K   +T+    + N ++N+ F+    
Sbjct: 18  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77

Query: 433 -EIGGGECLMVKCYNEEIFG-DENMGSARVNLEGLV--EGSVRDIWVPLEK 479
                   L    Y+ + F   + +G   ++    +  +   R +W  + +
Sbjct: 78  LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 3e-07
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 512 IELVIVEARDLVAADLRG-TSDPYVKVQYGDLKKR---TKVIFKTLNPQWHQTLEFPD-- 565
             + I EAR L A D +  TSDPY+K+     KK    T+V+ KTL+P + +T  F    
Sbjct: 24  FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83

Query: 566 ----DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQ 600
                   L   +   +       IG+ ++    +  ++
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 7e-07
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 379 RKINVTVVEGKDLMPKDKSGK-CDPYVKLQY---GKIVQRTRTAHSP-NHVWNQKFELDE 433
           +   V + E + L   D+     DPY+K+      K   +TR      +  +++ F    
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 434 IGGGE----CLMVKCYNEEIFG-DENMGSARVNLEGL 465
           I   +     L     + + F  D+ +G   + L G+
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 16/127 (12%), Positives = 36/127 (28%), Gaps = 33/127 (25%)

Query: 516 IVEARDLVAADLRGTSDPYVKVQYGDL--------KKRTKVIFKTLNPQWHQ-TLEFPDD 566
           ++  + L       +   YV+V+   L        + +      ++NP W +    F   
Sbjct: 7   VISGQFLS----ERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKI 62

Query: 567 GSP----LTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGE------- 615
             P    L + V +      +  +G  ++    L         + L              
Sbjct: 63  LMPELASLRVAVMEEG----NKFLGHRIIPINALNSG---YHHLCLHS-ESNMPLTMPAL 114

Query: 616 -IHVLIT 621
            I + + 
Sbjct: 115 FIFLEMK 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	726
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.84
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.82
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.81
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.81
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.81
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.78
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.78
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.77
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.77
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.76
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.75
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.75
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.75
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.74
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.74
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.73
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.72
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.72
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.71
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.69
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.69
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.68
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.68
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.67
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.64
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.64
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.63
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.63
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.6
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.57
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.57
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.54
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.53
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.52
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.52
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.51
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.41
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.4
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.32
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.08
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	91.62
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	88.89

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.4e-21  Score=173.48  Aligned_cols=114  Identities=25%  Similarity=0.466  Sum_probs=103.6

Q ss_pred             CCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCC
Q 004872          507 SGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASS  584 (726)
Q Consensus       507 ~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~  584 (726)
                      .+.|.|+|+|++|++|+.++..|.+||||++++++++++|+++++|.||.|||+|.|.+.  ...|.|+|||++.+++|+
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            467999999999999999999999999999999999999999999999999999999984  578999999999999999


Q ss_pred             eeEEEEEEccccCCCCceeeEEecC-----CCCCeEEEEEEEE
Q 004872          585 SIGDCVVEYQRLPPNQMADKWIPLQ-----GVRKGEIHVLITR  622 (726)
Q Consensus       585 ~lG~~~i~l~~l~~~~~~~~w~~L~-----~~~~G~i~l~l~~  622 (726)
                      +||++.++|.++..+.  .+|+.|.     +..+|+|++++++
T Consensus        83 ~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~  123 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDL  123 (126)
T ss_dssp             ECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred             eEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEE
Confidence            9999999999997664  4788774     3456999999988

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1.1e-19  Score=167.25  Aligned_cols=117  Identities=32%  Similarity=0.458  Sum_probs=106.7

Q ss_pred             cccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEE---CCeEEEeEeeeCCCCCe
Q 004872          480 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY---GDLKKRTKVIFKTLNPQ  556 (726)
Q Consensus       480 ~~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~v~~~t~nP~  556 (726)
                      ...|+|.++++|.              +..+.|+|+|++|+||++.+..|.+||||++++   +..+.+|++++++.||.
T Consensus        18 ~~~G~l~~sl~y~--------------~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~   83 (143)
T d1rsya_          18 EKLGKLQYSLDYD--------------FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV   83 (143)
T ss_dssp             CCCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCE
T ss_pred             hcceEEEEEEEEe--------------CCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcc
Confidence            3469999999987              566899999999999999999999999999999   44678999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCC
Q 004872          557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQG  610 (726)
Q Consensus       557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~  610 (726)
                      |||+|.|.+.     ...|.|+|||++.++++++||++.|+|.++..++....|++|+.
T Consensus        84 wne~f~f~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_          84 FNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             EEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             eeeeeEEEEEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            9999999974     57899999999999999999999999999998888899999974

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5e-20  Score=165.74  Aligned_cols=115  Identities=20%  Similarity=0.347  Sum_probs=103.1

Q ss_pred             ceEEEEEEEEeecCccc---ccCCCCccEEEEEECC---eEEEeEeeeCCCCCeeeeEEEEecC---CCeEEEEEEECCC
Q 004872          509 NGWIELVIVEARDLVAA---DLRGTSDPYVKVQYGD---LKKRTKVIFKTLNPQWHQTLEFPDD---GSPLTLHVRDHNA  579 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~---d~~g~~DPyv~v~~~~---~~~kT~v~~~t~nP~wne~~~f~v~---~~~l~i~V~d~d~  579 (726)
                      .++|+|+|++|+||+..   |..|.+||||++.+++   ++++|+++.++.||.|||+|.|.+.   ...|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            57899999999999864   4578999999999975   6789999999999999999999974   4679999999987


Q ss_pred             CCCCCeeEEEEEEccccCCCCceeeEEecCCCCCeEEEEEEEEEec
Q 004872          580 LLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVLITRKVP  625 (726)
Q Consensus       580 ~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~l~~~~p  625 (726)
                      . +|++||++.++|+++..+.....||+|.+...|+|++++++ +|
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~-~~  125 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV-AS  125 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEEC-CC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEE-Ee
Confidence            5 58999999999999998989999999999888999999988 55

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=3.7e-20  Score=168.00  Aligned_cols=117  Identities=27%  Similarity=0.485  Sum_probs=102.7

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEE-----CCeEEEeEeeeCCCCC
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY-----GDLKKRTKVIFKTLNP  555 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~v~~~t~nP  555 (726)
                      .+|+|++++.+.                .+.|.|+|++|+||++++..|.+||||++++     +..+++|+++++|.||
T Consensus         2 ~rG~i~l~~~~~----------------~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP   65 (132)
T d1a25a_           2 RRGRIYIQAHID----------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNP   65 (132)
T ss_dssp             TTCEEEEEEEES----------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSC
T ss_pred             cccEEEEEEEec----------------CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCC
Confidence            368999998753                3889999999999999999999999999999     4467899999999999


Q ss_pred             eeeeEEEEecC----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCCCCe
Q 004872          556 QWHQTLEFPDD----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKG  614 (726)
Q Consensus       556 ~wne~~~f~v~----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G  614 (726)
                      +|||+|.|.+.    ...|.|+|||+|.+++|++||++.|+|.++..+ ..+.||+|.+...|
T Consensus        66 ~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g  127 (132)
T d1a25a_          66 EWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG  127 (132)
T ss_dssp             EEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred             ccceEEEEEeEccccCCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCC
Confidence            99999999974    357999999999999999999999999998755 46899999765444

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.81  E-value=3.2e-20  Score=169.35  Aligned_cols=121  Identities=21%  Similarity=0.363  Sum_probs=105.9

Q ss_pred             CCCCceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeee-CCCCCeeeeEEEEecC--CCeEEEEEEECCCCC
Q 004872          505 IGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIF-KTLNPQWHQTLEFPDD--GSPLTLHVRDHNALL  581 (726)
Q Consensus       505 ~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~-~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~  581 (726)
                      ...+.|.|+|+|++|++|+..+..|.+||||++++++++.+|++++ +++||.|||+|.|.+.  ...|.|+|||+|.++
T Consensus         5 ~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~   84 (136)
T d1wfja_           5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCT
T ss_pred             CCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCC
Confidence            4467899999999999999999999999999999999999999987 5899999999999984  567999999999999


Q ss_pred             CCCeeEEEEEEccccCC-CCceeeEEecC--CCCCeEEEEEEEEEecC
Q 004872          582 ASSSIGDCVVEYQRLPP-NQMADKWIPLQ--GVRKGEIHVLITRKVPE  626 (726)
Q Consensus       582 ~d~~lG~~~i~l~~l~~-~~~~~~w~~L~--~~~~G~i~l~l~~~~p~  626 (726)
                      +|++||++.|+|.++.. +.....|++|.  +..+|+|+++++| .|.
T Consensus        85 ~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~-~p~  131 (136)
T d1wfja_          85 EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSF-KPS  131 (136)
T ss_dssp             TTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEE-EEC
T ss_pred             CCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEE-EeC
Confidence            99999999999998743 44557899884  4456999999999 553

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=3.7e-19  Score=160.76  Aligned_cols=117  Identities=29%  Similarity=0.380  Sum_probs=100.2

Q ss_pred             cccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC---CeEEEeEeeeCCCCCe
Q 004872          480 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG---DLKKRTKVIFKTLNPQ  556 (726)
Q Consensus       480 ~~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~v~~~t~nP~  556 (726)
                      ...|+|.++++|.              +..+.|+|+|++|+||+..+..|.+||||++++.   .++++|++++++.||+
T Consensus         2 ~p~G~l~~sl~y~--------------~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~   67 (130)
T d1dqva1           2 APCGRISFALRYL--------------YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPI   67 (130)
T ss_dssp             CSSCEEEEEEECC--------------SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCE
T ss_pred             CCcEEEEEEEEEE--------------CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCee
Confidence            3569999999886              6779999999999999999999999999999994   3578999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccc-c-CCCCceeeEEecCC
Q 004872          557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQR-L-PPNQMADKWIPLQG  610 (726)
Q Consensus       557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~-l-~~~~~~~~w~~L~~  610 (726)
                      |||+|.|.+.     ...|.|+|||++.+++|++||++.|++.. + ........|++|..
T Consensus        68 wne~f~f~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          68 FNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             EEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             eeeEEEEEEchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            9999999974     46799999999999999999999998643 2 22234557999974

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=6.4e-20  Score=168.66  Aligned_cols=115  Identities=33%  Similarity=0.544  Sum_probs=102.4

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC--------------eEEEe
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD--------------LKKRT  546 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~--------------~~~kT  546 (726)
                      ..|+|++++.|.                .|.|.|+|++|+||+.++..|.+||||++++..              .+.+|
T Consensus         5 ~~G~l~lsl~y~----------------~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT   68 (142)
T d1rh8a_           5 ITGEIQLQINYD----------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRT   68 (142)
T ss_dssp             CCCEEEEEEEEE----------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTT
T ss_pred             cceEEEEEEEEe----------------CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeec
Confidence            469999999985                278999999999999999999999999999932              23579


Q ss_pred             EeeeCCCCCeeeeEEEEec------CCCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872          547 KVIFKTLNPQWHQTLEFPD------DGSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  611 (726)
Q Consensus       547 ~v~~~t~nP~wne~~~f~v------~~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  611 (726)
                      +++++++||.|||+|.|.+      ....|.|+|||+|.+++|++||++.|+|.++..+....+||+|+..
T Consensus        69 ~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          69 KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             TTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             cCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            9999999999999999984      3568999999999999999999999999999888888999999864

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.77  E-value=1e-18  Score=158.92  Aligned_cols=113  Identities=25%  Similarity=0.424  Sum_probs=99.9

Q ss_pred             CceEEEEEEEEeecCcccc-----------cCCCCccEEEEEECCeE-EEeEeeeCCCCCeeeeEEEEecC-CCeEEEEE
Q 004872          508 GNGWIELVIVEARDLVAAD-----------LRGTSDPYVKVQYGDLK-KRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHV  574 (726)
Q Consensus       508 ~~g~L~v~v~~a~~L~~~d-----------~~g~~DPyv~v~~~~~~-~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V  574 (726)
                      ..|.|+|+|++|++|++.+           ..+.+||||++.+++++ .+|+++.++.||.|||+|.|++. ...|.|+|
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~~~l~i~V   83 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEE
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecCCceEEEE
Confidence            4699999999999998754           46788999999999865 58999999999999999999985 57899999


Q ss_pred             EECCCCCCCCeeEEEEEEccccCCC--CceeeEEecCCCCCeEEEEEEEE
Q 004872          575 RDHNALLASSSIGDCVVEYQRLPPN--QMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       575 ~d~d~~~~d~~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                      ||++.+++|++||.+.|+|+++..+  ...+.|++|++  .|+|++.+++
T Consensus        84 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p--~G~v~l~v~~  131 (136)
T d1gmia_          84 FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDL  131 (136)
T ss_dssp             EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEE
T ss_pred             EEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC--CcEEEEEEEE
Confidence            9999999999999999999998544  34678999984  7999999998

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=156.72  Aligned_cols=112  Identities=24%  Similarity=0.361  Sum_probs=100.5

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceE
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  456 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG  456 (726)
                      |.|.|+|++|++|+.++..|.+||||+++++++.++|+++ ++.||.|||.|.|.+.+....|.|+|||++.. +|++||
T Consensus         6 G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG   85 (126)
T d2ep6a1           6 GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLG   85 (126)
T ss_dssp             EEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECC
T ss_pred             EEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcceEE
Confidence            4899999999999999999999999999999999999999 99999999999999887778899999999888 789999


Q ss_pred             EEEEEccccccCCeeeeeeecccc-----ccceeEEEEEEE
Q 004872          457 SARVNLEGLVEGSVRDIWVPLEKV-----NTGELRLQIEAT  492 (726)
Q Consensus       457 ~~~i~L~~l~~~~~~~~w~~L~~~-----~~G~I~l~~~~~  492 (726)
                      ++.++|.++..+.  ..|+.|...     .+|+|++++++.
T Consensus        86 ~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          86 KVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             BCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEE
Confidence            9999999997654  468777542     369999999876

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.2e-18  Score=153.48  Aligned_cols=112  Identities=26%  Similarity=0.446  Sum_probs=94.0

Q ss_pred             ceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-----CeEEEeEeeeCCCCCee
Q 004872          483 GELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQW  557 (726)
Q Consensus       483 G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~w  557 (726)
                      |+|.++++|.              +..+.|+|+|++|+||+..+..+.+||||++++.     ..+++|++++++.||.|
T Consensus         1 G~l~l~l~y~--------------~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~w   66 (125)
T d2bwqa1           1 GQLSIKLWFD--------------KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW   66 (125)
T ss_dssp             CEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEE
T ss_pred             CEEEEEEEEE--------------CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEE
Confidence            8999999987              6678999999999999999999999999999992     24689999999999999


Q ss_pred             eeEEEEe-cC-----CCeEEEEEEECCCCC--CCCeeEEEEEEccccCCCCceeeEEecC
Q 004872          558 HQTLEFP-DD-----GSPLTLHVRDHNALL--ASSSIGDCVVEYQRLPPNQMADKWIPLQ  609 (726)
Q Consensus       558 ne~~~f~-v~-----~~~l~i~V~d~d~~~--~d~~lG~~~i~l~~l~~~~~~~~w~~L~  609 (726)
                      ||+|.|. +.     ...|.|+|||++.++  ++++||++.++|+++.... ...||+|+
T Consensus        67 ne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~  125 (125)
T d2bwqa1          67 NQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  125 (125)
T ss_dssp             EEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             ccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence            9999996 43     457999999999764  4569999999999987654 36899985

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=9.8e-18  Score=152.81  Aligned_cols=114  Identities=25%  Similarity=0.415  Sum_probs=98.3

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEEC-----CeEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYG-----DLKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~v~~~t~nP~  556 (726)
                      +|+|.++++|.              +..+.|+|+|++|+||+..+..+.+||||++++.     ..+++|++++++.||.
T Consensus         1 rG~l~l~l~Y~--------------~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~   66 (137)
T d2cm5a1           1 RGKILVSLMYS--------------TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE   66 (137)
T ss_dssp             CCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCE
T ss_pred             CcEEEEEEEEE--------------CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCc
Confidence            49999999998              6679999999999999999999999999999982     2467999999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEcccc------------CCCCceeeEEecC
Q 004872          557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL------------PPNQMADKWIPLQ  609 (726)
Q Consensus       557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l------------~~~~~~~~w~~L~  609 (726)
                      |||+|.|++.     ...|.|+|||++.++++++||++.+++..+            .++.+..+|++|+
T Consensus        67 wne~f~f~v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~v~~Wh~L~  136 (137)
T d2cm5a1          67 FNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ  136 (137)
T ss_dssp             EEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECB
T ss_pred             cceEEEEEeEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCccccCcchhhhhhHhhCCCCeeeEceecc
Confidence            9999999984     467999999999999999999999999753            2334556666664

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=4.8e-18  Score=154.69  Aligned_cols=117  Identities=23%  Similarity=0.331  Sum_probs=103.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc--CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcce
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA--HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENM  455 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~--~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~i  455 (726)
                      |.|.|+|++|++|+.++..|.+||||+++++...++|+++  ++.||.|||.|.|.+.+....|.|+|||++.. +|++|
T Consensus        10 G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~i   89 (136)
T d1wfja_          10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAV   89 (136)
T ss_dssp             EEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCS
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCCCCCEE
Confidence            5999999999999999999999999999999888899988  58899999999999888777899999999988 88999


Q ss_pred             EEEEEEccccccC-Ceeeeeeecccc--ccceeEEEEEEEEec
Q 004872          456 GSARVNLEGLVEG-SVRDIWVPLEKV--NTGELRLQIEATRVD  495 (726)
Q Consensus       456 G~~~i~L~~l~~~-~~~~~w~~L~~~--~~G~I~l~~~~~~~~  495 (726)
                      |++.++|.++... .....|+++...  ..|+|++++.|.|..
T Consensus        90 G~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~~  132 (136)
T d1wfja_          90 GEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             EEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             EEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeCC
Confidence            9999999998654 456789988643  369999999999754

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.6e-18  Score=154.34  Aligned_cols=114  Identities=24%  Similarity=0.359  Sum_probs=101.7

Q ss_pred             cEEEEEEEEeecCCCC---CCCCCCCcEEEEEECC---eEeecccc-CCCCCceeeEEEEEeeCC-ceeEEEEEEeecCC
Q 004872          379 RKINVTVVEGKDLMPK---DKSGKCDPYVKLQYGK---IVQRTRTA-HSPNHVWNQKFELDEIGG-GECLMVKCYNEEIF  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~---d~~g~~dpyv~v~lg~---~~~kT~~~-~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~~  450 (726)
                      +.|+|+|++|+||+..   |..|.+||||++.++.   +.+||+++ ++.||.|||.|.|.+.+. ...|.|+|||++..
T Consensus         3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~   82 (126)
T d1rlwa_           3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV   82 (126)
T ss_dssp             EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred             cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC
Confidence            4899999999999864   3458899999999953   67899999 999999999999998775 56899999999888


Q ss_pred             CCcceEEEEEEccccccCCeeeeeeeccccccceeEEEEEEE
Q 004872          451 GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQIEAT  492 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~~~~~  492 (726)
                      +|++||++.++|+++..+.....||+|.+.+.|+|++++++.
T Consensus        83 ~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~  124 (126)
T d1rlwa_          83 MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA  124 (126)
T ss_dssp             CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEE
Confidence            899999999999999888888899999998899999999865

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=5.9e-18  Score=154.45  Aligned_cols=114  Identities=29%  Similarity=0.350  Sum_probs=92.9

Q ss_pred             cceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEE--CC---eEEEeEeeeCCCCCe
Q 004872          482 TGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQY--GD---LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       482 ~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~--~~---~~~kT~v~~~t~nP~  556 (726)
                      +|+|.++++|.              +..+.|.|+|++|+||+..+..+.+||||++++  ++   .+++|++++++.||.
T Consensus         1 rG~l~~sl~Y~--------------~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~   66 (138)
T d1w15a_           1 RGELLVSLCYQ--------------STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAV   66 (138)
T ss_dssp             CCEEEEEEEEE--------------TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEE
T ss_pred             CcEEEEEEEEc--------------CCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCe
Confidence            49999999998              667899999999999999999999999999998  33   356899999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEcccc------------CCCCceeeEEecC
Q 004872          557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL------------PPNQMADKWIPLQ  609 (726)
Q Consensus       557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l------------~~~~~~~~w~~L~  609 (726)
                      |||+|.|.+.     ...|.|+|||+|.++++++||++.|++...            .++.+..+|++|.
T Consensus        67 wne~f~F~v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~  136 (138)
T d1w15a_          67 FNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLC  136 (138)
T ss_dssp             EEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             ECcEEEEEecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEcc
Confidence            9999999974     346999999999999999999999998753            2345667888875

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.2e-18  Score=154.18  Aligned_cols=114  Identities=18%  Similarity=0.251  Sum_probs=95.5

Q ss_pred             ceEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCCeeE
Q 004872          509 NGWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       509 ~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      .++|.|+|++|++++..+..+.+||||++.++++.++|++++++.||.|||.|.|++. ...|.|+|||+|.+++|++||
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~V~d~d~~~~d~~iG   84 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLG   84 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECTTCEEEEEEEECCSSSCCEEEE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEecceeEEEEEEccCCCCCceEE
Confidence            3889999999999999888899999999999999999999999999999999999985 678999999999999999999


Q ss_pred             EEEEEccccC---CCC--ceeeEEecCC-----CCCeEEEEEEEE
Q 004872          588 DCVVEYQRLP---PNQ--MADKWIPLQG-----VRKGEIHVLITR  622 (726)
Q Consensus       588 ~~~i~l~~l~---~~~--~~~~w~~L~~-----~~~G~i~l~l~~  622 (726)
                      ++.++|.++.   .+.  ....|+.|.+     ...|+|.+.|++
T Consensus        85 ~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~  129 (133)
T d2nq3a1          85 TAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG  129 (133)
T ss_dssp             EEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred             EEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence            9999998873   222  2334444432     234999988875

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.9e-17  Score=154.46  Aligned_cols=116  Identities=28%  Similarity=0.488  Sum_probs=101.4

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCCC
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLNP  555 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~nP  555 (726)
                      ..|+|.++++|.              +..+.|.|+|++|+||+..+..+.+||||++++..     .+++|++++++.||
T Consensus        10 ~~G~l~~sl~Y~--------------~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP   75 (157)
T d1uowa_          10 KLGDICFSLRYV--------------PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNP   75 (157)
T ss_dssp             CCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSC
T ss_pred             eeeEEEEEEEEc--------------CCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCc
Confidence            369999999998              56799999999999999999999999999999832     34689999999999


Q ss_pred             eeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEcccc------------CCCCceeeEEecCC
Q 004872          556 QWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL------------PPNQMADKWIPLQG  610 (726)
Q Consensus       556 ~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l------------~~~~~~~~w~~L~~  610 (726)
                      +|||+|.|.+.     ...|.|+|||++.++++++||++.|++...            .++.+..+||+|+.
T Consensus        76 ~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_          76 YYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             EEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             ccCCeEEEEecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            99999999984     458999999999999999999999999653            34456789999975

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.2e-17  Score=150.56  Aligned_cols=114  Identities=18%  Similarity=0.246  Sum_probs=100.8

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC----eEEEeEeeeCCCCCe
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD----LKKRTKVIFKTLNPQ  556 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~----~~~kT~v~~~t~nP~  556 (726)
                      +.|+|+++++|.              ...+.|.|+|++|++|+.   .|.+||||++++.+    ..++|++++++.||+
T Consensus        11 ~~~~l~~sl~y~--------------~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~   73 (138)
T d1wfma_          11 QAPKLHYCLDYD--------------CQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTT   73 (138)
T ss_dssp             SCCEEEEEEEEE--------------TTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEE
T ss_pred             cCCEEEEEEEEC--------------CCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCce
Confidence            468999999997              566899999999999954   56889999999943    357899999999999


Q ss_pred             eeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCCCceeeEEecCCC
Q 004872          557 WHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPNQMADKWIPLQGV  611 (726)
Q Consensus       557 wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~  611 (726)
                      |||+|.|++.     ...|.|+|||++.++++++||++.|+|.++......+.|++|...
T Consensus        74 wne~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_          74 WEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             CSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             EeeeEEEEeeehhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence            9999999974     467999999999999999999999999999888888999999864

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3e-17  Score=149.64  Aligned_cols=115  Identities=24%  Similarity=0.301  Sum_probs=97.6

Q ss_pred             ccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCC-CCccEEEEEE---CCeEEEeEeeeCCCCCe
Q 004872          481 NTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRG-TSDPYVKVQY---GDLKKRTKVIFKTLNPQ  556 (726)
Q Consensus       481 ~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g-~~DPyv~v~~---~~~~~kT~v~~~t~nP~  556 (726)
                      +-|+|.+++.|.              +..+.|+|+|++|+||+..+..+ .+||||++++   ...+++|++++++.||.
T Consensus         7 ~~G~l~~sl~Y~--------------~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~   72 (138)
T d1ugka_           7 GLGTLFFSLEYN--------------FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPA   72 (138)
T ss_dssp             CCCEEEEEEEEE--------------GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCE
T ss_pred             CCEEEEEEEEEe--------------CCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCc
Confidence            359999999998              56689999999999999887665 5799999999   44678999999999999


Q ss_pred             eeeEEEEe-cC-----CCeEEEEEEECCCCCCCCeeEEEEEEccccCCC-CceeeEEecC
Q 004872          557 WHQTLEFP-DD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRLPPN-QMADKWIPLQ  609 (726)
Q Consensus       557 wne~~~f~-v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l~~~-~~~~~w~~L~  609 (726)
                      |||+|.|. +.     ...|+|+|||+|.+++|++||++.++|+++... .....|..+.
T Consensus        73 wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~  132 (138)
T d1ugka_          73 FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII  132 (138)
T ss_dssp             EEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred             eeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence            99999996 43     457999999999999999999999999998643 3455666653

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=3.4e-17  Score=148.10  Aligned_cols=105  Identities=30%  Similarity=0.473  Sum_probs=92.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEEeeCC--ceeEEEEEEeecCC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG--GECLMVKCYNEEIF  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~v~~~--~~~l~i~V~d~~~~  450 (726)
                      +.|.|+|++|+||+.++..|.+||||++++     +..+++|+++ ++.||.|||.|.|.+...  ...|.|+|||++..
T Consensus        15 ~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~   94 (132)
T d1a25a_          15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT   94 (132)
T ss_dssp             SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred             CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCCC
Confidence            389999999999999999999999999999     4568899999 999999999999997664  45799999999988


Q ss_pred             -CCcceEEEEEEccccccCCeeeeeeeccccccce
Q 004872          451 -GDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGE  484 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~  484 (726)
                       +|++||.+.++|.++..+ ....||+|.+.+.|+
T Consensus        95 ~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~ge  128 (132)
T d1a25a_          95 SRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGE  128 (132)
T ss_dssp             SCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHT
T ss_pred             CCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCCc
Confidence             789999999999998654 457899998866664

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.1e-16  Score=144.31  Aligned_cols=110  Identities=20%  Similarity=0.314  Sum_probs=87.7

Q ss_pred             eEEEEEEEEeecCcc--cccCCCCccEEEEEEC-----CeEEEeEeeeC-CCCCeeeeEEEEecC---CCeEEEEEEECC
Q 004872          510 GWIELVIVEARDLVA--ADLRGTSDPYVKVQYG-----DLKKRTKVIFK-TLNPQWHQTLEFPDD---GSPLTLHVRDHN  578 (726)
Q Consensus       510 g~L~v~v~~a~~L~~--~d~~g~~DPyv~v~~~-----~~~~kT~v~~~-t~nP~wne~~~f~v~---~~~l~i~V~d~d  578 (726)
                      ..|+|+|++|++|+.  .+.++.+||||++++.     ..+++|+++++ ++||.|||+|.|.+.   ...|.|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            579999999999975  4567889999999993     46789998865 579999999999874   467999999999


Q ss_pred             CCCCCCeeEEEEEEccccCCCCceeeEEecCCCC-----CeEEEEEEEE
Q 004872          579 ALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVR-----KGEIHVLITR  622 (726)
Q Consensus       579 ~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~-----~G~i~l~l~~  622 (726)
                      .+++|++||++.++|+.+..+   .+|++|.+..     .+.|.+.+++
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~  129 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISI  129 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEE
Confidence            999999999999999999765   3688886433     2566666665

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.69  E-value=1.6e-16  Score=144.23  Aligned_cols=112  Identities=19%  Similarity=0.392  Sum_probs=96.7

Q ss_pred             cEEEEEEEEeecCCCCC-----------CCCCCCcEEEEEECCeE-eecccc-CCCCCceeeEEEEEeeCCceeEEEEEE
Q 004872          379 RKINVTVVEGKDLMPKD-----------KSGKCDPYVKLQYGKIV-QRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCY  445 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d-----------~~g~~dpyv~v~lg~~~-~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~  445 (726)
                      |.|+|+|.+|++|++.+           ..+.+||||+++++++. .+|+++ ++.||.|||.|.|.+.+ ...|.|+||
T Consensus         6 G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V~   84 (136)
T d1gmia_           6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAVF   84 (136)
T ss_dssp             EEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEE
T ss_pred             EEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEEEE
Confidence            48999999999998643           45789999999998764 688888 99999999999999754 467999999


Q ss_pred             eecCC-CCcceEEEEEEccccccCC--eeeeeeeccccccceeEEEEEEEE
Q 004872          446 NEEIF-GDENMGSARVNLEGLVEGS--VRDIWVPLEKVNTGELRLQIEATR  493 (726)
Q Consensus       446 d~~~~-~d~~iG~~~i~L~~l~~~~--~~~~w~~L~~~~~G~I~l~~~~~~  493 (726)
                      |++.. +|++||.+.++|+++..+.  ..+.|++|++  .|+|++.+.+.+
T Consensus        85 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p--~G~v~l~v~~~~  133 (136)
T d1gmia_          85 HDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSG  133 (136)
T ss_dssp             ECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEE
T ss_pred             EecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC--CcEEEEEEEEEe
Confidence            99988 7899999999999997654  4678999985  699999998874

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1e-17  Score=154.20  Aligned_cols=103  Identities=31%  Similarity=0.463  Sum_probs=92.8

Q ss_pred             cccceeEEEEEEEEecCCCCCCCCCCCCCceEEEEEEEEeecCcccccCCCCccEEEEEECC-----eEEEeEeeeCCCC
Q 004872          480 VNTGELRLQIEATRVDDNEGSRGQNIGSGNGWIELVIVEARDLVAADLRGTSDPYVKVQYGD-----LKKRTKVIFKTLN  554 (726)
Q Consensus       480 ~~~G~I~l~~~~~~~~~~~~~~~~~~~~~~g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~v~~~t~n  554 (726)
                      ...|+|.++++|.              +..|.|.|+|++|+||+..+..+.+||||++++.+     .+++|++++++.|
T Consensus         4 ~~~G~l~~sl~Y~--------------~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~   69 (145)
T d1dqva2           4 ADLGELNFSLCYL--------------PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLN   69 (145)
T ss_dssp             SCCCEEEEEEEEE--------------TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSS
T ss_pred             CcceEEEEEEEEc--------------CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCC
Confidence            3569999999998              66799999999999999999999999999999954     2578999999999


Q ss_pred             CeeeeEEEEecC-----CCeEEEEEEECCCCCCCCeeEEEEEEcccc
Q 004872          555 PQWHQTLEFPDD-----GSPLTLHVRDHNALLASSSIGDCVVEYQRL  596 (726)
Q Consensus       555 P~wne~~~f~v~-----~~~l~i~V~d~d~~~~d~~lG~~~i~l~~l  596 (726)
                      |.|||+|.|.+.     ...|.|+|||++.++++++||++.|++..+
T Consensus        70 P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~  116 (145)
T d1dqva2          70 PTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA  116 (145)
T ss_dssp             CEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTT
T ss_pred             ceecceEEEEEehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHc
Confidence            999999999874     467999999999999999999999999765

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=3.6e-16  Score=139.56  Aligned_cols=96  Identities=17%  Similarity=0.315  Sum_probs=83.9

Q ss_pred             eEEEEEEEEeecCcccccCCCCccEEEEEECCeEEEeEeeeCCCCCeeeeEEEEecC--CCeEEEEEEECCCCCCCCeeE
Q 004872          510 GWIELVIVEARDLVAADLRGTSDPYVKVQYGDLKKRTKVIFKTLNPQWHQTLEFPDD--GSPLTLHVRDHNALLASSSIG  587 (726)
Q Consensus       510 g~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~v~~~t~nP~wne~~~f~v~--~~~l~i~V~d~d~~~~d~~lG  587 (726)
                      +.|.|+|.+|++|.+.+   ..||||++.+++.+.+|.++++ .||.|||+|.|++.  ...|.|+|||++.. +|++||
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG   76 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVG   76 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceE
Confidence            67999999999999876   5799999999999999998864 59999999999984  57899999999876 589999


Q ss_pred             EEEEEccccCC--CCceeeEEecCC
Q 004872          588 DCVVEYQRLPP--NQMADKWIPLQG  610 (726)
Q Consensus       588 ~~~i~l~~l~~--~~~~~~w~~L~~  610 (726)
                      ++.|+|+++..  .....+||+|..
T Consensus        77 ~~~I~L~~l~~~~~~~~~~W~~L~~  101 (128)
T d2cjta1          77 TVWIPLRTIRQSNEEGPGEWLTLDS  101 (128)
T ss_dssp             EEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred             EEEEEehhhccCCCCCCCeeEECCc
Confidence            99999999853  345678999963

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=3.1e-16  Score=143.70  Aligned_cols=100  Identities=26%  Similarity=0.462  Sum_probs=90.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEEeeC---CceeEEEEEEeecCC-C
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIG---GGECLMVKCYNEEIF-G  451 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~v~~---~~~~l~i~V~d~~~~-~  451 (726)
                      .|.|+|++|+||+.++..|.+||||++++   +...++|+++ ++.||.|||.|.|.+..   ....|.|+|||++.. +
T Consensus        35 ~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~~  114 (143)
T d1rsya_          35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSK  114 (143)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSC
T ss_pred             EEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCCC
Confidence            79999999999999999999999999999   5667899999 99999999999998654   256899999999887 7


Q ss_pred             CcceEEEEEEccccccCCeeeeeeeccc
Q 004872          452 DENMGSARVNLEGLVEGSVRDIWVPLEK  479 (726)
Q Consensus       452 d~~iG~~~i~L~~l~~~~~~~~w~~L~~  479 (726)
                      +++||++.++|.++..+.....||+|+.
T Consensus       115 ~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         115 HDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            8899999999999987777889999975

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.6e-16  Score=139.05  Aligned_cols=114  Identities=15%  Similarity=0.235  Sum_probs=93.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCC-CCcceE
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIF-GDENMG  456 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~-~d~~iG  456 (726)
                      +.|.|+|++|+++..++..+.+||||++.++++.++|+++ ++.||.|||.|.|.+.+ ...|.|+|||++.. +|++||
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~iG   84 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLLG   84 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEEE
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceEE
Confidence            3799999999999988888999999999999999999999 99999999999999754 56799999999988 889999


Q ss_pred             EEEEEccccccC--C---eeeeeeecccc-----ccceeEEEEEEEE
Q 004872          457 SARVNLEGLVEG--S---VRDIWVPLEKV-----NTGELRLQIEATR  493 (726)
Q Consensus       457 ~~~i~L~~l~~~--~---~~~~w~~L~~~-----~~G~I~l~~~~~~  493 (726)
                      ++.++|.++...  .   ....|+.+.+.     ..|+|.+.+.+..
T Consensus        85 ~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          85 TAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             EEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             EEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence            999999998632  1   22344444432     2488888887654

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=7.1e-16  Score=138.82  Aligned_cols=102  Identities=24%  Similarity=0.359  Sum_probs=86.3

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  450 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  450 (726)
                      +.|.|+|++|+||+.++..|.+||||++++   ++..++|+++ ++.||.|||+|.|.+...   ...|.|+|||++.. 
T Consensus        18 ~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~   97 (130)
T d1dqva1          18 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS   97 (130)
T ss_dssp             CEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSS
T ss_pred             CEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCCCC
Confidence            389999999999999999999999999999   4567999999 999999999999997553   56799999999987 


Q ss_pred             CCcceEEEEEEccc-cccCC-eeeeeeecccc
Q 004872          451 GDENMGSARVNLEG-LVEGS-VRDIWVPLEKV  480 (726)
Q Consensus       451 ~d~~iG~~~i~L~~-l~~~~-~~~~w~~L~~~  480 (726)
                      ++++||++.|++.. +.... ....|++|.+.
T Consensus        98 ~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          98 RHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             CCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             CCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence            88999999998654 33332 44579999863

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=2.1e-16  Score=144.68  Aligned_cols=101  Identities=24%  Similarity=0.468  Sum_probs=88.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEEC--------------CeEeecccc-CCCCCceeeEEEEEeeC----CceeE
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQYG--------------KIVQRTRTA-HSPNHVWNQKFELDEIG----GGECL  440 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg--------------~~~~kT~~~-~t~nP~wne~f~f~v~~----~~~~l  440 (726)
                      .|.|+|++|+||+.++..|.+||||++++.              +..+||+++ ++.||.|||.|.|....    ....|
T Consensus        19 ~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L   98 (142)
T d1rh8a_          19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTL   98 (142)
T ss_dssp             EEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEE
T ss_pred             EEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEE
Confidence            799999999999999999999999999982              124689999 99999999999998543    35689


Q ss_pred             EEEEEeecCC-CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872          441 MVKCYNEEIF-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  480 (726)
Q Consensus       441 ~i~V~d~~~~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  480 (726)
                      .|+|||++.. ++++||++.++|.++..+.....||+|.+.
T Consensus        99 ~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          99 EVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             EEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            9999999987 789999999999999877777899999875

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=9.9e-16  Score=136.66  Aligned_cols=98  Identities=19%  Similarity=0.298  Sum_probs=86.0

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcceEEE
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGKIVQRTRTAHSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDENMGSA  458 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~~~~kT~~~~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~iG~~  458 (726)
                      +.|.|+|.+|++|..++   ..||||++.+++.+.+|+++++.||.|||.|.|.+.++...|.|+|||++..+|++||++
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~~d~~lG~~   78 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTV   78 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECCSSCEEEEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEecCCCCeEEEEEEEeeccccceEEEEEEeCCCcCCcceEEE
Confidence            37999999999998865   679999999999999998884459999999999998888889999999988789999999


Q ss_pred             EEEccccccCC--eeeeeeeccc
Q 004872          459 RVNLEGLVEGS--VRDIWVPLEK  479 (726)
Q Consensus       459 ~i~L~~l~~~~--~~~~w~~L~~  479 (726)
                      .|+|+++....  ....||+|..
T Consensus        79 ~I~L~~l~~~~~~~~~~W~~L~~  101 (128)
T d2cjta1          79 WIPLRTIRQSNEEGPGEWLTLDS  101 (128)
T ss_dssp             EEEGGGSCBCSSCCCCEEEECBC
T ss_pred             EEEehhhccCCCCCCCeeEECCc
Confidence            99999997443  4568999965

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.1e-15  Score=133.63  Aligned_cols=98  Identities=24%  Similarity=0.438  Sum_probs=81.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEEeeC-C---ceeEEEEEEeecC
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIG-G---GECLMVKCYNEEI  449 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~v~~-~---~~~l~i~V~d~~~  449 (726)
                      .|.|+|++|+||+.++..+.+||||++++     +...+||+++ ++.||.|||+|.|.... .   ...|.|+|||.+.
T Consensus        15 ~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~   94 (125)
T d2bwqa1          15 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR   94 (125)
T ss_dssp             EEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC--
T ss_pred             EEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCC
Confidence            89999999999999998999999999999     2347899999 99999999999997433 2   4579999999887


Q ss_pred             C---CCcceEEEEEEccccccCCeeeeeeecc
Q 004872          450 F---GDENMGSARVNLEGLVEGSVRDIWVPLE  478 (726)
Q Consensus       450 ~---~d~~iG~~~i~L~~l~~~~~~~~w~~L~  478 (726)
                      .   .+++||++.++|+++..... ..||+|+
T Consensus        95 ~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~  125 (125)
T d2bwqa1          95 VREEESEFLGEILIELETALLDDE-PHWYKLQ  125 (125)
T ss_dssp             -----CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred             CCCCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence            5   45699999999999875543 5799985

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=5.1e-15  Score=131.35  Aligned_cols=105  Identities=15%  Similarity=0.233  Sum_probs=84.4

Q ss_pred             EEEEEEEeecCcccccCCCCccEEEEEECCe-----EEEeEeeeCCCCCeeeeEEEEecC-CCeEEEEEEECCCCCCCCe
Q 004872          512 IELVIVEARDLVAADLRGTSDPYVKVQYGDL-----KKRTKVIFKTLNPQWHQTLEFPDD-GSPLTLHVRDHNALLASSS  585 (726)
Q Consensus       512 L~v~v~~a~~L~~~d~~g~~DPyv~v~~~~~-----~~kT~v~~~t~nP~wne~~~f~v~-~~~l~i~V~d~d~~~~d~~  585 (726)
                      +++.+....--+.....+.+||||+|++.+.     .++|+++++|+||+|||+|.|.+. ...|.|.|||+|    +++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~~~l~i~V~d~d----d~~   80 (123)
T d1bdya_           5 LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAA----EDP   80 (123)
T ss_dssp             EEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTTCEEEEEEEEET----TEE
T ss_pred             EEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccccEEEEEEEEcc----ccc
Confidence            4444444322233455889999999999542     457999999999999999999985 578999999986    679


Q ss_pred             eEEEEEEcccc-----CCCCceeeEEecCCCCCeEEEEEEEE
Q 004872          586 IGDCVVEYQRL-----PPNQMADKWIPLQGVRKGEIHVLITR  622 (726)
Q Consensus       586 lG~~~i~l~~l-----~~~~~~~~w~~L~~~~~G~i~l~l~~  622 (726)
                      +|.+.+++..+     ..+...+.|++|+  +.|+|+++++|
T Consensus        81 ~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~  120 (123)
T d1bdya_          81 MSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQY  120 (123)
T ss_dssp             EEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEE
T ss_pred             cCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEE
Confidence            99999999877     3466788999997  58999999998

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1.9e-14  Score=129.51  Aligned_cols=110  Identities=19%  Similarity=0.276  Sum_probs=86.0

Q ss_pred             EEEEEEEEeecCCC--CCCCCCCCcEEEEEE-----CCeEeecccc--CCCCCceeeEEEEEeeCC-ceeEEEEEEeecC
Q 004872          380 KINVTVVEGKDLMP--KDKSGKCDPYVKLQY-----GKIVQRTRTA--HSPNHVWNQKFELDEIGG-GECLMVKCYNEEI  449 (726)
Q Consensus       380 ~L~V~V~~a~~L~~--~d~~g~~dpyv~v~l-----g~~~~kT~~~--~t~nP~wne~f~f~v~~~-~~~l~i~V~d~~~  449 (726)
                      .|.|+|++|++|+.  .+.++.+||||++++     +...++|+++  ++.||.|||+|+|.+... ...|.|+|||++.
T Consensus         5 ~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d~   84 (131)
T d1qasa2           5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDS   84 (131)
T ss_dssp             EEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECCT
T ss_pred             EEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEecC
Confidence            79999999999975  445788999999999     3578999988  457999999999987664 5679999999998


Q ss_pred             C-CCcceEEEEEEccccccCCeeeeeeeccccc-----cceeEEEEEEE
Q 004872          450 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKVN-----TGELRLQIEAT  492 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~-----~G~I~l~~~~~  492 (726)
                      . +|++||++.++|.++..+   .+|++|.+..     .+.|.+++++.
T Consensus        85 ~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          85 SSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             TTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence            8 788999999999998643   4688886543     34556666543

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=3.9e-14  Score=128.65  Aligned_cols=87  Identities=25%  Similarity=0.342  Sum_probs=70.7

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  449 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  449 (726)
                      +.|.|+|++|+||+.++..+.+||||++++  +.   ..++|+++ ++.||.|||+|.|.+...   ...|.|.|||++.
T Consensus        15 ~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~   94 (138)
T d1w15a_          15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSER   94 (138)
T ss_dssp             TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT
T ss_pred             CEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCCC
Confidence            389999999999999998899999999998  32   35689999 999999999999987543   5579999999998


Q ss_pred             C-CCcceEEEEEEcccc
Q 004872          450 F-GDENMGSARVNLEGL  465 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l  465 (726)
                      . ++++||++.+++...
T Consensus        95 ~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          95 GSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             TSCCEEEEEEEESTTCC
T ss_pred             CCCCCEEEEEEEcchhC
Confidence            8 899999999999764

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=6.6e-14  Score=126.91  Aligned_cols=100  Identities=21%  Similarity=0.310  Sum_probs=83.2

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY-----GKIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  449 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-----g~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  449 (726)
                      +.|.|+|++|+||+.++..+.+||||++++     ....+||+++ ++.||.|||.|.|.+...   ...|.|.|||.+.
T Consensus        15 ~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~   94 (137)
T d2cm5a1          15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDI   94 (137)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             CEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCCC
Confidence            389999999999999888899999999998     2347899999 999999999999997643   5689999999988


Q ss_pred             C-CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872          450 F-GDENMGSARVNLEGLVEGSVRDIWVPLEKV  480 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  480 (726)
                      . ++++||++.+++..+..  ....|++|.+.
T Consensus        95 ~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~~  124 (137)
T d2cm5a1          95 GKSNDYIGGCQLGISAKGE--RLKHWYECLKN  124 (137)
T ss_dssp             SSCCEEEEEEEEETTCCHH--HHHHHHHHHHC
T ss_pred             CCCCCEEEEEEeCccccCc--chhhhhhHhhC
Confidence            7 88999999999987532  23456666543

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.3e-13  Score=125.00  Aligned_cols=98  Identities=19%  Similarity=0.278  Sum_probs=81.3

Q ss_pred             EEEEEEEEeecCCCCCCCC-CCCcEEEEEE---CCeEeecccc-CCCCCceeeEEEEEeeCC----ceeEEEEEEeecCC
Q 004872          380 KINVTVVEGKDLMPKDKSG-KCDPYVKLQY---GKIVQRTRTA-HSPNHVWNQKFELDEIGG----GECLMVKCYNEEIF  450 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g-~~dpyv~v~l---g~~~~kT~~~-~t~nP~wne~f~f~v~~~----~~~l~i~V~d~~~~  450 (726)
                      .|.|+|++|+||+.++..+ .+||||++++   +...++|+++ ++.||.|||.|.|.....    ...|+|+|||.+.+
T Consensus        23 ~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~  102 (138)
T d1ugka_          23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRF  102 (138)
T ss_dssp             EEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSS
T ss_pred             EEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCC
Confidence            7999999999999887665 4799999999   5668999999 999999999999974332    45799999999988


Q ss_pred             -CCcceEEEEEEccccccCC-eeeeeeec
Q 004872          451 -GDENMGSARVNLEGLVEGS-VRDIWVPL  477 (726)
Q Consensus       451 -~d~~iG~~~i~L~~l~~~~-~~~~w~~L  477 (726)
                       ++++||++.++|+++.... ....|..+
T Consensus       103 ~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_         103 SRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             CCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             CCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence             8999999999999985433 34445444

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.8e-14  Score=127.41  Aligned_cols=98  Identities=19%  Similarity=0.252  Sum_probs=85.5

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE--C--CeEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecCC-
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY--G--KIVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEIF-  450 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g--~~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~~-  450 (726)
                      .|.|+|++|++|+.   .|.+||||++++  +  ...++|+++ ++.||.|||.|.|.+...   ...|.|+|||.+.. 
T Consensus        27 ~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~  103 (138)
T d1wfma_          27 ELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS  103 (138)
T ss_dssp             EEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC
T ss_pred             EEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecccc
Confidence            79999999999954   577899999999  2  346889999 999999999999997653   57899999999988 


Q ss_pred             CCcceEEEEEEccccccCCeeeeeeecccc
Q 004872          451 GDENMGSARVNLEGLVEGSVRDIWVPLEKV  480 (726)
Q Consensus       451 ~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~  480 (726)
                      ++++||++.|+|.++........|++|...
T Consensus       104 ~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_         104 RHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             TTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             cceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence            789999999999999766677899999874

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.4e-13  Score=127.75  Aligned_cols=102  Identities=21%  Similarity=0.316  Sum_probs=85.6

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CC---eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQY--GK---IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  449 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~l--g~---~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  449 (726)
                      +.|.|+|++|+||+..+..+.+||||++++  ++   ..++|+++ ++.||+|||+|.|.+...   ...|.|+|||.+.
T Consensus        25 ~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~  104 (157)
T d1uowa_          25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK  104 (157)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred             CEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCC
Confidence            389999999999999898999999999998  22   25689999 999999999999997653   5589999999998


Q ss_pred             C-CCcceEEEEEEccccc----------c--CCeeeeeeecccc
Q 004872          450 F-GDENMGSARVNLEGLV----------E--GSVRDIWVPLEKV  480 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~----------~--~~~~~~w~~L~~~  480 (726)
                      . ++++||++.|++....          .  +....+|++|...
T Consensus       105 ~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_         105 IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             CCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            8 7899999999997632          1  2345789998764

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=6.8e-13  Score=117.35  Aligned_cols=105  Identities=12%  Similarity=0.259  Sum_probs=83.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeecccc-CCCCCceeeEEEEEeeCCceeEEEEEEeecCCCCcc
Q 004872          381 INVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGGGECLMVKCYNEEIFGDEN  454 (726)
Q Consensus       381 L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~-~t~nP~wne~f~f~v~~~~~~l~i~V~d~~~~~d~~  454 (726)
                      +.|.++.+..+  +...+.+||||+|++++     ..++|+++ +|+||+|||+|+|.+.+ ...+.|.|||++   +++
T Consensus         7 ~~~~~~~~~~~--~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d---d~~   80 (123)
T d1bdya_           7 ISFNSYELGSL--QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA---EDP   80 (123)
T ss_dssp             EEEEEEECCTT--CCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET---TEE
T ss_pred             EEEEEeecccC--CCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc---ccc
Confidence            44444544443  45578999999999943     24678888 99999999999999755 467999999986   789


Q ss_pred             eEEEEEEcccccc-----CCeeeeeeeccccccceeEEEEEEEE
Q 004872          455 MGSARVNLEGLVE-----GSVRDIWVPLEKVNTGELRLQIEATR  493 (726)
Q Consensus       455 iG~~~i~L~~l~~-----~~~~~~w~~L~~~~~G~I~l~~~~~~  493 (726)
                      +|.+.+.+.++..     +...+.|++|+  ..|+|+++++|..
T Consensus        81 ~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~f~  122 (123)
T d1bdya_          81 MSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred             cCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEEec
Confidence            9999999999863     44678999997  4799999999873

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=1.2e-13  Score=126.53  Aligned_cols=99  Identities=22%  Similarity=0.324  Sum_probs=80.8

Q ss_pred             cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeecccc-CCCCCceeeEEEEEeeCC---ceeEEEEEEeecC
Q 004872          379 RKINVTVVEGKDLMPKDKSGKCDPYVKLQYGK-----IVQRTRTA-HSPNHVWNQKFELDEIGG---GECLMVKCYNEEI  449 (726)
Q Consensus       379 ~~L~V~V~~a~~L~~~d~~g~~dpyv~v~lg~-----~~~kT~~~-~t~nP~wne~f~f~v~~~---~~~l~i~V~d~~~  449 (726)
                      +.|.|+|++|+||+..+..+.+||||++++..     ..++|+++ ++.||.|||.|.|.+...   ...|.|.|||++.
T Consensus        20 ~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~   99 (145)
T d1dqva2          20 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC   99 (145)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCS
T ss_pred             CEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEecCC
Confidence            48999999999999988889999999999931     25789999 999999999999986542   5679999999988


Q ss_pred             C-CCcceEEEEEEccccccCCeeeeeeecc
Q 004872          450 F-GDENMGSARVNLEGLVEGSVRDIWVPLE  478 (726)
Q Consensus       450 ~-~d~~iG~~~i~L~~l~~~~~~~~w~~L~  478 (726)
                      . ++++||++.|++..+... ....|+.|.
T Consensus       100 ~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~  128 (145)
T d1dqva2         100 IGHNEVIGVCRVGPEAADPH-GREHWAEML  128 (145)
T ss_dssp             SSCCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred             CCCCcEEEEEEECchHcCch-hhHHHHHHH
Confidence            8 788999999999876322 223455543

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.8e-12  Score=112.24  Aligned_cols=98  Identities=16%  Similarity=0.275  Sum_probs=74.2

Q ss_pred             EEEEEEEEeecCcccccCCCCccEEEEEEC------CeEEEeEe--eeCCCCCeeeeE-EEEe-cC---CCeEEEEEEEC
Q 004872          511 WIELVIVEARDLVAADLRGTSDPYVKVQYG------DLKKRTKV--IFKTLNPQWHQT-LEFP-DD---GSPLTLHVRDH  577 (726)
Q Consensus       511 ~L~v~v~~a~~L~~~d~~g~~DPyv~v~~~------~~~~kT~v--~~~t~nP~wne~-~~f~-v~---~~~l~i~V~d~  577 (726)
                      .|+|+|++|++|+..    ..||||+|++-      ..+.+|++  ..+++||.|||. |.|. +.   -..|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999865    57999999982      23445544  367899999975 5443 32   35799999998


Q ss_pred             CCCCCCCeeEEEEEEccccCCCCceeeEEecCCCCCeEEEEE
Q 004872          578 NALLASSSIGDCVVEYQRLPPNQMADKWIPLQGVRKGEIHVL  619 (726)
Q Consensus       578 d~~~~d~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~G~i~l~  619 (726)
                      |    |++||++.+|++.+..|.   +|++|.+.....+.++
T Consensus        78 d----~~~lG~~~ipl~~l~~Gy---R~vpL~~~~g~~l~~~  112 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSGY---HHLCLHSESNMPLTMP  112 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEEEEE
T ss_pred             C----CCEEEEEEEEcccCcCCc---eEEEccCCCcCCCCCc
Confidence            6    789999999999998764   7788876554444433

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=6.9e-10  Score=97.39  Aligned_cols=100  Identities=23%  Similarity=0.361  Sum_probs=74.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCCcEEEEEE-C-----CeEeecccc---CCCCCceeeE-EEEE-eeCC-ceeEEEEEEee
Q 004872          380 KINVTVVEGKDLMPKDKSGKCDPYVKLQY-G-----KIVQRTRTA---HSPNHVWNQK-FELD-EIGG-GECLMVKCYNE  447 (726)
Q Consensus       380 ~L~V~V~~a~~L~~~d~~g~~dpyv~v~l-g-----~~~~kT~~~---~t~nP~wne~-f~f~-v~~~-~~~l~i~V~d~  447 (726)
                      .|.|+|++|++|+.+    ..||||+|++ |     ...++|++.   ++.||.|||. |.|. +..+ -..|.|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            699999999999764    4799999998 3     234555543   7899999876 4443 3333 45899999998


Q ss_pred             cCCCCcceEEEEEEccccccCCeeeeeeeccccccceeEEEE
Q 004872          448 EIFGDENMGSARVNLEGLVEGSVRDIWVPLEKVNTGELRLQI  489 (726)
Q Consensus       448 ~~~~d~~iG~~~i~L~~l~~~~~~~~w~~L~~~~~G~I~l~~  489 (726)
                      +   +++||++.++++.+..+   .++++|.+.....+..+.
T Consensus        78 d---~~~lG~~~ipl~~l~~G---yR~vpL~~~~g~~l~~~~  113 (122)
T d2zkmx2          78 G---NKFLGHRIIPINALNSG---YHHLCLHSESNMPLTMPA  113 (122)
T ss_dssp             T---TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEEEEEE
T ss_pred             C---CCEEEEEEEEcccCcCC---ceEEEccCCCcCCCCCce
Confidence            5   78999999999998554   477888875444444443