Citrus Sinensis ID: 004880

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-----
MEEVVTLDAESNGTLLISKDMEEEEKKLLEARADEENVEQENVSKNEDHLNDLQFNKLDELLTQTQMYAEFLLEKMEDITVNGVEQESEPVGKKKGRGSKRKAAPQCNTRKAKRAVAAMLTRSKEGEKTENENLSEEERVDKEQRELVSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKMIQTDIGEEDLERVLDRADLIAGCLDDEEKPNAAVYPLKGPGWEVVIPTATGGMLSTLNS
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHcccccccccccEEEcHHHHHHHHccccccccccEEEEEEcccccccccccHHHHHcccccccEEEEccccccccHHHHHHHHccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHcccccEEccccccHHHHHHHHHHHccccccccEEEEcccccccccccccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEEEccccHHHHHHHHHHHccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
ccccEEEcccccccccHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccccccccHcHHHHHcccccHHHHHHHHHHHccccccccccccccccccccEcccccccccccccHHHHHHHHHHHHHHHHcccccEEHHHcccHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHccccccccccEEEEcHHHHHHHHHHHHHcccEEEEEEEcHHHccccHHHHHHHHHHcccccEEEEcccccHccHHHHHHHHHHHcHHHcccHHHHHHHHcccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccccEEEEEEEEccccccEEcccccEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHccccHEEEEccccccccccHHHHHHccHHHHHHHHHcccHHHHccccccccHHHHHHHHHccHHHHHHHcHHcccccHHccccccccEEccccccccccccccc
MEEVVTLdaesngtllISKDMEEEEKKLLEARADeenveqenvsknedhlndLQFNKLDELLTQTQMYAEFLLEKMEditvngveqesepvgkkkgrgskrkaapqcntRKAKRAVAAMLTRskegektenenlseeeRVDKEQRELVSLLTggklksyqLKGVKWLISLWQNGLNGILadqmglgkTIQTIAFLAHLkgnglhgpylviaplstlsnWVNEISRFVPSVSAIIYHGSKKERDEIRRkhmpraigpkfpiVVTSYEVALSDARKYLRHYNWKYLVVdeghrlknpkckllkelkyipignkllltgtpLQNNLAELWSLLHFILPDIFSSLEEFQSWfdlsgkcnSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFsagrgmkgkLNNLMVQLRKncnhpdllesafsdscfyppveQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNekgyevcridgsvrldeRKRQiqdfndvnSSYRIFLLSTragglginltaadtcilydsdwnpqmdlqamdrchrigqtkpVHVYRLATAQSVEGRILKRAFSKLKLEHVVigkgqfhqertksncidALEEEDLLALLQDEETAEDKMIQTDIGEEDLERVLDRADLIAgclddeekpnaavyplkgpgwevviptatggmlstlns
meevvtldaesngtlliskdMEEEEKKLLEAradeenveqenvsknedhlndLQFNKLDELLTQTQMYAEFLLEKMEDITvngveqesepvgkkkgrgskrkaapqcntrkaKRAVAAMltrskegektenenlseeervdkEQRELVSLltggklksyqLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIyhgskkerdeirrkhmpraigpkfpivVTSYEVALSDARKYLRHYNWKYlvvdeghrlknpKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNhkvlvfsqwtkILDIMEYYFNEKGYEVCRIDGSVRLDERKrqiqdfndvnssYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLehvvigkgqfhqerTKSNCIDALEEEDLLALLQDEETAEDKMIqtdigeedlerVLDRADLIAgclddeekpnaavyplkgpgweVVIPTAtggmlstlns
MEEVVTLDAESNGTLLISKDMeeeekkllearadeeNVEQENVSKNEDHLNDLQFNKLDELLTQTQMYAEFLLEKMEDITVNGVEQESEPVgkkkgrgskrkAAPQCNTRKAKRAVAAMLTRSKegektenenlseeeRVDKEQRELVSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKfrlldrllarlfarNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIdaleeedllallqdeetaedKMIQTDIGEEDLERVLDRADLIAGCLDDEEKPNAAVYPLKGPGWEVVIPTATGGMLSTLNS
****************************************************LQFNKLDELLTQTQMYAEFLLEKMEDITV*****************************************************************LVSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHG*************PRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCN**************QMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQ************DIGEEDLERVLDRADLIAGCLDDEEKPNAAVYPLKGPGWEVVIPTATG********
****VTL*********************************************LQFNKLDELLTQTQMYAEFLLE**********************************************************************RELVSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKC***************QMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLE*******************NLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIG***********************ALLQD*************GEEDLERVLDRAD*******************KGPGWEVVIPTAT**MLS****
*********ESNGTLLISKDMEEEEKKLLEAR*************NEDHLNDLQFNKLDELLTQTQMYAEFLLEKMEDITVNG**********************************AMLTRS*******************EQRELVSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKMIQTDIGEEDLERVLDRADLIAGCLDDEEKPNAAVYPLKGPGWEVVIPTATGGMLSTLNS
**EVVTLD*ESNGTLLISKDM*EEEKKLLEARADEENVEQENVSKNEDHLNDLQFNKLDELLTQTQMYAEFLLEKMEDITVNGVE**********************************************ENLSEEERVDKEQRELVSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSG*****VM*EELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVF***RGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAE*****TDIGEEDLERVLDRADLIAGCLDDEEKPNAAVYPLKGPGWEVVIPT***********
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MEEVVTLDAESNGTLLIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEDHLNDLQFNKLDELLTQTQMYAEFLLEKMEDITVNGVEQESEPVGKKKGRGSKRKAAPQCNTRKAKRAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKMIQTDIGEEDLERVLDRADLIAGCLDDEEKPNAAVYPLKGPGWEVVIPTATGGMLSTLNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query725 2.2.26 [Sep-21-2011]
Q9XFH4764 ATP-dependent DNA helicas yes no 0.987 0.937 0.713 0.0
Q60848821 Lymphocyte-specific helic yes no 0.737 0.651 0.433 1e-134
Q9NRZ9838 Lymphoid-specific helicas yes no 0.859 0.743 0.381 1e-133
Q6PGB8 1046 Probable global transcrip no no 0.702 0.486 0.452 1e-129
P28370 1054 Probable global transcrip no no 0.845 0.581 0.4 1e-129
O60264 1052 SWI/SNF-related matrix-as no no 0.831 0.573 0.392 1e-128
Q91ZW3 1051 SWI/SNF-related matrix-as no no 0.831 0.573 0.391 1e-128
Q8RWY3 1055 Putative chromatin-remode no no 0.699 0.480 0.445 1e-126
Q7G8Y3 1107 Probable chromatin-remode no no 0.699 0.457 0.445 1e-125
Q24368 1027 Chromatin-remodeling comp yes no 0.700 0.494 0.427 1e-123
>sp|Q9XFH4|DDM1_ARATH ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1040 bits (2690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/726 (71%), Positives = 611/726 (84%), Gaps = 10/726 (1%)

Query: 1   MEEVVTLDAESNGTLLISKDMEEEEKKLLEARADEENVEQENVSKNEDHLNDLQFNKLDE 60
           +EE + L A++  + LIS+ M +EE++LL+ R DEE       S    +LN+ QF KLDE
Sbjct: 48  VEEEILL-AKNGDSSLISEAMAQEEEQLLKLREDEEKANNAG-SAVAPNLNETQFTKLDE 105

Query: 61  LLTQTQMYAEFLLEKMEDITVNGVEQESEPV-GKKKGRGSKRKAAPQCNTRKAKRAVAAM 119
           LLTQTQ+Y+EFLLEKMEDIT+NG+E ES+    +K GRG KRKAA Q N  KAKRAVAAM
Sbjct: 106 LLTQTQLYSEFLLEKMEDITINGIESESQKAEPEKTGRGRKRKAASQYNNTKAKRAVAAM 165

Query: 120 LTRSKEGEKTENENLSEEERVDKEQRELVSLLTGGKLKSYQLKGVKWLISLWQNGLNGIL 179
           ++RSKE  +T N +L+EEE V K Q EL  LLTGG+LKSYQLKGVKWLISLWQNGLNGIL
Sbjct: 166 ISRSKEDGETINSDLTEEETVIKLQNELCPLLTGGQLKSYQLKGVKWLISLWQNGLNGIL 225

Query: 180 ADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSK 239
           ADQMGLGKTIQTI FL+HLKGNGL GPYLVIAPLSTLSNW NEI+RF PS++AIIYHG K
Sbjct: 226 ADQMGLGKTIQTIGFLSHLKGNGLDGPYLVIAPLSTLSNWFNEIARFTPSINAIIYHGDK 285

Query: 240 KERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKL 299
            +RDE+RRKHMP+ +GPKFPIV+TSYEVA++DA++ LRHY WKY+V+DEGHRLKN KCKL
Sbjct: 286 NQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKRILRHYPWKYVVIDEGHRLKNHKCKL 345

Query: 300 LKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVM 359
           L+ELK++ + NKLLLTGTPLQNNL+ELWSLL+FILPDIF+S +EF+SWFD S K  +E  
Sbjct: 346 LRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEAT 405

Query: 360 KEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLI 419
           KEE EEKRR Q+V+KLH ILRPF+LRRMK DVE  LPRKKEII+YATMT+HQ+ FQ+HL+
Sbjct: 406 KEE-EEKRRAQVVSKLHGILRPFILRRMKCDVELSLPRKKEIIMYATMTDHQKKFQEHLV 464

Query: 420 NKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQC 479
           N TLE HL E     G+G KGKLNNL++QLRKNCNHPDLL+     S  YPPVE+IV QC
Sbjct: 465 NNTLEAHLGENAIR-GQGWKGKLNNLVIQLRKNCNHPDLLQGQIDGSYLYPPVEEIVGQC 523

Query: 480 GKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQI 539
           GKFRLL+RLL RLFA NHKVL+FSQWTK+LDIM+YYF+EKG+EVCRIDGSV+LDER+RQI
Sbjct: 524 GKFRLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQI 583

Query: 540 QDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPV 599
           +DF+D  SS  IFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPV
Sbjct: 584 KDFSDEKSSCSIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPV 643

Query: 600 HVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDE 659
           HVYRL+TAQS+E R+LKRA+SKLKLEHVVIG+GQFHQER KS+    LEEED+LALL+++
Sbjct: 644 HVYRLSTAQSIETRVLKRAYSKLKLEHVVIGQGQFHQERAKSST--PLEEEDILALLKED 701

Query: 660 ETAEDKMIQTDIGEEDLERVLDRADLIAGCLDDEEKPNAAVYPLKGPGWEVVIPTATGGM 719
           ETAEDK+IQTDI + DL+R+LDR+DL        E   A  +P+KGPGWEVV+P+ +GGM
Sbjct: 702 ETAEDKLIQTDISDADLDRLLDRSDLTITA--PGETQAAEAFPVKGPGWEVVLPS-SGGM 758

Query: 720 LSTLNS 725
           LS+LNS
Sbjct: 759 LSSLNS 764
ATP-dependent DNA helicase that plays a role in formation, organization, stability and heritability of heterochromatin and thus regulates several physiological traits. Binds to the nucleosome and promotes chromatin remodeling in an ATP-dependent manner; induces nucleosome repositioning on a short DNA fragment, and, possibly, could be guided to target sites (including silent transposable elements) by small interfering RNAs (siRNAs). Can binds both free and nucleosomal DNA. Required for the heritable maintenance of genome integrity and transcriptional gene silencing (TGS), including homology-dependent gene silencing (HDG silencing), via the maintenance of DNA methylation (mostly on cytosine, in both CpG and CpHpG sites, where H is A, T or C) and of histone methylation (e.g. chromatin methylation). May facilitate localization of MBD proteins at specific nuclear domains. Necessary for the maintenance of the genomic imprint at the MEA locus, especially for the silencing of paternally inherited MEA locus. Plays a major role in the inactivation maintenance of retrotransposons (e.g. Tar17, SINE, LINE, ATLN39, CAC1 (CACTAs), Athila elements, and mutator-like elements MULEs and TIR-MULEs) and the silencing of repeated genes and transgenes (e.g. T-DNA insertions). Required for KYP-dependent histone H3 'Lys-9' (H3K9me) methylation, deacetylation of histone H4 'Lys-16' (H4K16) and MET1-dependent DNA methylation. Involved in the chromatin organization of 5S rRNA genes (localized in the pericentromeric heterochromatin of chromosomes 3, 4, and 5) modifications during heterochromatin establishment. Prevents siRNA accumulation (siRNA are probably involved in epigenetic inheritance and in 5S rRNA genes regulation by silencing). Required during plant organogenesis and development, as well as during seed formation.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|Q60848|HELLS_MOUSE Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2 Back     alignment and function description
>sp|Q9NRZ9|HELLS_HUMAN Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1 Back     alignment and function description
>sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator SNF2L1 OS=Mus musculus GN=Smarca1 PE=1 SV=1 Back     alignment and function description
>sp|P28370|SMCA1_HUMAN Probable global transcription activator SNF2L1 OS=Homo sapiens GN=SMARCA1 PE=1 SV=2 Back     alignment and function description
>sp|O60264|SMCA5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=1 SV=1 Back     alignment and function description
>sp|Q91ZW3|SMCA5_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Mus musculus GN=Smarca5 PE=1 SV=1 Back     alignment and function description
>sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=3 Back     alignment and function description
>sp|Q7G8Y3|ISW2_ORYSJ Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2 Back     alignment and function description
>sp|Q24368|ISWI_DROME Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila melanogaster GN=Iswi PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query725
224094755754 chromatin remodeling complex subunit [Po 0.994 0.956 0.781 0.0
224145438719 chromatin remodeling complex subunit [Po 0.986 0.994 0.786 0.0
356495411 943 PREDICTED: ATP-dependent DNA helicase DD 0.991 0.762 0.771 0.0
255561188788 ISWI chromatin remodeling complex ATPase 0.988 0.909 0.798 0.0
449516232 828 PREDICTED: ATP-dependent DNA helicase DD 0.984 0.862 0.787 0.0
449462886822 PREDICTED: ATP-dependent DNA helicase DD 0.984 0.868 0.785 0.0
356538178757 PREDICTED: ATP-dependent DNA helicase DD 0.986 0.944 0.764 0.0
359476575759 PREDICTED: ATP-dependent DNA helicase DD 0.984 0.940 0.796 0.0
357483387750 Swi2/Snf2-related chromatin remodeling A 0.975 0.942 0.75 0.0
297735171800 unnamed protein product [Vitis vinifera] 0.984 0.892 0.753 0.0
>gi|224094755|ref|XP_002310223.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222853126|gb|EEE90673.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1184 bits (3063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/727 (78%), Positives = 645/727 (88%), Gaps = 6/727 (0%)

Query: 1   MEEVVTLDAESNGTLLISKDMEEEEKKLLEARADEENVEQENVSKNEDHLNDLQFNKLDE 60
           +EEV+ ++A++  + LISK M EEE+KLL +R  E    QE V +    LN+ Q+ +LD+
Sbjct: 32  LEEVIFVEAKNGDSSLISKSMAEEEEKLLNSRIKEV---QETVPEEAARLNESQYTRLDD 88

Query: 61  LLTQTQMYAEFLLEKMEDITVNGVEQESEPVGKKKGRGSKRKAAPQCNTRKAKRAVAAML 120
           LLTQTQ+Y+EFLLE+M+ IT NGVEQE EP  + +GRGSKRKAA   N+RKAKRAV AML
Sbjct: 89  LLTQTQLYSEFLLEQMDQITTNGVEQEDEPAKQSRGRGSKRKAAALYNSRKAKRAVTAML 148

Query: 121 TRSKEGEKTENENLSEEERVDKEQRELVSLLTGGKLKSYQLKGVKWLISLWQNGLNGILA 180
           TRSKE E  E+ NL+EEERV+KEQRELV LLTGG+LKSYQ+KGVKWLISLWQNGLNGILA
Sbjct: 149 TRSKEVENAEDANLTEEERVEKEQRELVPLLTGGRLKSYQIKGVKWLISLWQNGLNGILA 208

Query: 181 DQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKK 240
           DQMGLGKTIQTI FLAHL GNGL+GPYLVIAPLSTLSNWVNEISRFVPS+ AIIYHG+KK
Sbjct: 209 DQMGLGKTIQTIGFLAHLIGNGLNGPYLVIAPLSTLSNWVNEISRFVPSMDAIIYHGNKK 268

Query: 241 ERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLL 300
           +RDEIRRKHMPR+IGPKFPI+VTSYE+ALSDA+K+LRHY WKYLVVDEGHRLKN KCKLL
Sbjct: 269 QRDEIRRKHMPRSIGPKFPIIVTSYEIALSDAKKHLRHYPWKYLVVDEGHRLKNSKCKLL 328

Query: 301 KELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMK 360
           KELKY+ + NKL+LTGTPLQNNLAELWSLL+FILPDIF S EEF+SWFDLSGKC++E MK
Sbjct: 329 KELKYLCVDNKLILTGTPLQNNLAELWSLLNFILPDIFQSHEEFESWFDLSGKCSNEAMK 388

Query: 361 EELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLIN 420
           EE+EE+RR Q+V KLHAILRPFLLRR+K+DVEQMLPRKKEIILYAT+TEHQ+ FQDHLIN
Sbjct: 389 EEVEERRRAQVVVKLHAILRPFLLRRLKNDVEQMLPRKKEIILYATLTEHQKKFQDHLIN 448

Query: 421 KTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCG 480
           KTLE +LREK+   GRGMKG+L NLMVQLRKNC HPDLLESAF  S FYPPVEQIVEQCG
Sbjct: 449 KTLEGYLREKM-DTGRGMKGRLTNLMVQLRKNCYHPDLLESAFDGSYFYPPVEQIVEQCG 507

Query: 481 KFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQ 540
           KFRLLD+LL RLFA  HKVL+FSQWTK+LDIM+YYF+EKG+EVCRIDGSV LDERKRQI+
Sbjct: 508 KFRLLDKLLNRLFALKHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVNLDERKRQIE 567

Query: 541 DFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVH 600
           +FND NS YR+FLLSTRAGGLGINLT+ADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVH
Sbjct: 568 EFNDENSQYRVFLLSTRAGGLGINLTSADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVH 627

Query: 601 VYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEE 660
           VYRLATAQS+EGRILKRAFSKLKLEHVVIGKGQFH E+TKS   + +EE+D+LALL+DEE
Sbjct: 628 VYRLATAQSIEGRILKRAFSKLKLEHVVIGKGQFHLEQTKSKGTEVMEEDDILALLRDEE 687

Query: 661 TAEDKMIQTDIGEEDLERVLDRADLIAGCLDDEEKPNAAV--YPLKGPGWEVVIPTATGG 718
           TAEDK+IQTDI +EDLER+LDR+DL+ G  DD+ +  AA   +PLKGPGWEVVIP A GG
Sbjct: 688 TAEDKLIQTDISDEDLERILDRSDLVVGSSDDDTESIAATGSFPLKGPGWEVVIPNANGG 747

Query: 719 MLSTLNS 725
           MLSTL S
Sbjct: 748 MLSTLYS 754

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224145438|ref|XP_002325643.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222862518|gb|EEF00025.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356495411|ref|XP_003516571.1| PREDICTED: ATP-dependent DNA helicase DDM1-like [Glycine max] Back     alignment and taxonomy information
>gi|255561188|ref|XP_002521606.1| ISWI chromatin remodeling complex ATPase ISW1, putative [Ricinus communis] gi|223539284|gb|EEF40877.1| ISWI chromatin remodeling complex ATPase ISW1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449516232|ref|XP_004165151.1| PREDICTED: ATP-dependent DNA helicase DDM1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449462886|ref|XP_004149166.1| PREDICTED: ATP-dependent DNA helicase DDM1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356538178|ref|XP_003537581.1| PREDICTED: ATP-dependent DNA helicase DDM1-like [Glycine max] Back     alignment and taxonomy information
>gi|359476575|ref|XP_002267239.2| PREDICTED: ATP-dependent DNA helicase DDM1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357483387|ref|XP_003611980.1| Swi2/Snf2-related chromatin remodeling ATPase [Medicago truncatula] gi|355513315|gb|AES94938.1| Swi2/Snf2-related chromatin remodeling ATPase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297735171|emb|CBI17533.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query725
TAIR|locus:2173644764 CHR1 "chromatin remodeling 1" 0.924 0.876 0.679 1.1e-247
ZFIN|ZDB-GENE-030131-9923853 hells "helicase, lymphoid-spec 0.388 0.330 0.519 5.1e-130
UNIPROTKB|F1SC64838 HELLS "Uncharacterized protein 0.438 0.379 0.448 4e-128
UNIPROTKB|E2QW28839 HELLS "Uncharacterized protein 0.438 0.379 0.445 4e-128
UNIPROTKB|Q9NRZ9838 HELLS "Lymphoid-specific helic 0.438 0.379 0.442 2.8e-127
UNIPROTKB|E1BCV0816 HELLS "Uncharacterized protein 0.437 0.388 0.452 4.5e-127
MGI|MGI:106209821 Hells "helicase, lymphoid spec 0.373 0.330 0.490 7.3e-127
ASPGD|ASPL0000056677868 AN1024 [Emericella nidulans (t 0.383 0.320 0.510 4e-126
UNIPROTKB|F1P3Q4 982 SMARCA1 "Uncharacterized prote 0.361 0.266 0.462 2.2e-123
UNIPROTKB|E1C0M8 1038 SMARCA5 "Uncharacterized prote 0.362 0.253 0.45 4.2e-121
TAIR|locus:2173644 CHR1 "chromatin remodeling 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2386 (845.0 bits), Expect = 1.1e-247, P = 1.1e-247
 Identities = 461/678 (67%), Positives = 537/678 (79%)

Query:    49 HLNDLQFNKLDELLTQTQMYAEFLLEKMEDITVNGVEQESEPVX-XXXXXXXXXXAAPQC 107
             +LN+ QF KLDELLTQTQ+Y+EFLLEKMEDIT+NG+E ES+              AA Q 
Sbjct:    94 NLNETQFTKLDELLTQTQLYSEFLLEKMEDITINGIESESQKAEPEKTGRGRKRKAASQY 153

Query:   108 NTRKAKRAVAAMLTRSKXXXXXXXXXXXXXXRVDKEQRELVSLLTGGKLKSYQLKGVKWL 167
             N  KAKRAVAAM++RSK               V K Q EL  LLTGG+LKSYQLKGVKWL
Sbjct:   154 NNTKAKRAVAAMISRSKEDGETINSDLTEEETVIKLQNELCPLLTGGQLKSYQLKGVKWL 213

Query:   168 ISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPLSTLSNWVNEISRFV 227
             ISLWQNGLNGILADQMGLGKTIQTI FL+HLKGNGL GPYLVIAPLSTLSNW NEI+RF 
Sbjct:   214 ISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGNGLDGPYLVIAPLSTLSNWFNEIARFT 273

Query:   228 PSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVD 287
             PS++AIIYHG K +RDE+RRKHMP+ +GPKFPIV+TSYEVA++DA++ LRHY WKY+V+D
Sbjct:   274 PSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKRILRHYPWKYVVID 333

Query:   288 EGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSW 347
             EGHRLKN KCKLL+ELK++ + NKLLLTGTPLQNNL+ELWSLL+FILPDIF+S +EF+SW
Sbjct:   334 EGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESW 393

Query:   348 FDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATM 407
             FD S K  +E  KEE EEKRR Q+V+KLH ILRPF+LRRMK DVE  LPRKKEII+YATM
Sbjct:   394 FDFSEKNKNEATKEE-EEKRRAQVVSKLHGILRPFILRRMKCDVELSLPRKKEIIMYATM 452

Query:   408 TEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSC 467
             T+HQ+ FQ+HL+N TLE HL E     G+G KGKLNNL++QLRKNCNHPDLL+     S 
Sbjct:   453 TDHQKKFQEHLVNNTLEAHLGENAIR-GQGWKGKLNNLVIQLRKNCNHPDLLQGQIDGSY 511

Query:   468 FYPPVEQIVEQCGKXXXXXXXXXXXXXXNHKVLVFSQWTKILDIMEYYFNEKGYEVCRID 527
              YPPVE+IV QCGK              NHKVL+FSQWTK+LDIM+YYF+EKG+EVCRID
Sbjct:   512 LYPPVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRID 571

Query:   528 GSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAM 587
             GSV+LDER+RQI+DF+D  SS  IFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAM
Sbjct:   572 GSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAM 631

Query:   588 DRCHRIGQTKPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIXXX 647
             DRCHRIGQTKPVHVYRL+TAQS+E R+LKRA+SKLKLEHVVIG+GQFHQER KS+     
Sbjct:   632 DRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSKLKLEHVVIGQGQFHQERAKSS--TPL 689

Query:   648 XXXXXXXXXXXXXXXXXKMIQTDIGEEDLERVLDRADLIAGCLDDEEKPNAAVYPLKGPG 707
                              K+IQTDI + DL+R+LDR+DL      + +   A  +P+KGPG
Sbjct:   690 EEEDILALLKEDETAEDKLIQTDISDADLDRLLDRSDLTITAPGETQAAEA--FPVKGPG 747

Query:   708 WEVVIPTATGGMLSTLNS 725
             WEVV+P++ GGMLS+LNS
Sbjct:   748 WEVVLPSS-GGMLSSLNS 764
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IMP
GO:0044030 "regulation of DNA methylation" evidence=IMP
GO:0051574 "positive regulation of histone H3-K9 methylation" evidence=IMP
GO:0000786 "nucleosome" evidence=IDA
GO:0004003 "ATP-dependent DNA helicase activity" evidence=IMP
GO:0016887 "ATPase activity" evidence=IDA
GO:0090241 "negative regulation of histone H4 acetylation" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0006344 "maintenance of chromatin silencing" evidence=IMP
GO:0009294 "DNA mediated transformation" evidence=IMP
GO:0032197 "transposition, RNA-mediated" evidence=IMP
GO:0006342 "chromatin silencing" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=IMP;RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
ZFIN|ZDB-GENE-030131-9923 hells "helicase, lymphoid-specific" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SC64 HELLS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2QW28 HELLS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NRZ9 HELLS "Lymphoid-specific helicase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCV0 HELLS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:106209 Hells "helicase, lymphoid specific" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000056677 AN1024 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3Q4 SMARCA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C0M8 SMARCA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XFH4DDM1_ARATH3, ., 6, ., 4, ., 1, 20.71340.98750.9371yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.12LOW CONFIDENCE prediction!
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query725
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 1e-169
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 1e-103
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 1e-102
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 3e-30
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 2e-29
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 2e-24
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 3e-23
smart0049082 smart00490, HELICc, helicase superfamily c-termina 2e-22
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 3e-05
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 3e-05
pfam11496279 pfam11496, HDA2-3, Class II histone deacetylase co 3e-04
COG1205 851 COG1205, COG1205, Distinct helicase family with a 5e-04
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 8e-04
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information 
 Score =  512 bits (1320), Expect = e-169
 Identities = 273/691 (39%), Positives = 409/691 (59%), Gaps = 84/691 (12%)

Query: 8   DAESNGTLLISKDMEEEEKKLLEARAD--EENVEQENVSKNEDHLNDLQFNKLDELLTQT 65
           +AES     ISK  +   K+L + +    ++ +EQ+N + + D +N+    +L  LL QT
Sbjct: 48  EAESPAKAEISKREKARLKELKKQKKQEIQKILEQQNAAIDAD-MNNKGKGRLKYLLQQT 106

Query: 66  QMYAEFLLEKMEDITVNGVEQESEPVGKKKGRGSKRKAAPQCNTRKAKRAVAAMLTRSKE 125
           +++A F           G +  S    K +GR                         SK 
Sbjct: 107 EIFAHFA---------KGDQSASAKKAKGRGRH-----------------------ASKL 134

Query: 126 GEKTENENLSEEERVDKEQRELVSLLT-----GGKLKSYQLKGVKWLISLWQNGLNGILA 180
            E+ E+E   +EE           LL       GK++ YQL G+ WLI L++NG+NGILA
Sbjct: 135 TEEEEDEEYLKEEEDGLGGSGGTRLLVQPSCIKGKMRDYQLAGLNWLIRLYENGINGILA 194

Query: 181 DQMGLGKTIQTIAFLAHL-KGNGLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSK 239
           D+MGLGKT+QTI+ L +L +  G+ GP++V+AP STL NW+NEI RF P + A+ +HG+ 
Sbjct: 195 DEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNP 254

Query: 240 KERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKL 299
           +ER   R + +   +  KF + VTS+E+A+ + +  L+ ++W+Y+++DE HR+KN    L
Sbjct: 255 EERAHQREELL---VAGKFDVCVTSFEMAIKE-KTALKRFSWRYIIIDEAHRIKNENSLL 310

Query: 300 LKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVM 359
            K ++      +LL+TGTPLQNNL ELW+LL+F+LP+IFSS E F  WF +SG       
Sbjct: 311 SKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISG------- 363

Query: 360 KEELEEKRRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLI 419
                E  + ++V +LH +LRPFLLRR+KSDVE+ LP KKE IL   M++ Q+ +   L+
Sbjct: 364 -----ENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALL 418

Query: 420 NKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYPPV---EQIV 476
            K L+      V +AG G + +L N+ +QLRK CNHP L + A       PP    E +V
Sbjct: 419 QKDLD------VVNAG-GERKRLLNIAMQLRKCCNHPYLFQGAEPG----PPYTTGEHLV 467

Query: 477 EQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERK 536
           E  GK  LLD+LL +L  R+ +VL+FSQ T++LDI+E Y   +GY+ CRIDG+   ++R 
Sbjct: 468 ENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD 527

Query: 537 RQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQT 596
             I  FN   S   +FLLSTRAGGLGINL  AD  ILYDSDWNPQ+DLQA DR HRIGQ 
Sbjct: 528 ASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQK 587

Query: 597 KPVHVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALL 656
           K V V+R  T  ++E ++++RA+ KL L+ +VI +G+  +++T       + +++LL ++
Sbjct: 588 KEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKT-------VNKDELLQMV 640

Query: 657 QDEETAEDKMIQTD---IGEEDLERVLDRAD 684
           +      + +  +    I +ED++R++ + +
Sbjct: 641 R---YGAEMVFSSKDSTITDEDIDRIIAKGE 668

Length = 1033
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3 Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 725
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG0386 1157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG0387 923 consensus Transcription-coupled repair protein CSB 100.0
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG1015 1567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
PRK04914 956 ATP-dependent helicase HepA; Validated 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
PRK13766 773 Hef nuclease; Provisional 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 100.0
KOG0298 1394 consensus DEAD box-containing helicase-like transc 100.0
PHA02558501 uvsW UvsW helicase; Provisional 100.0
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.98
PTZ00110545 helicase; Provisional 99.96
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.96
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.96
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.96
KOG0354 746 consensus DEAD-box like helicase [General function 99.96
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.95
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.95
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.95
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.95
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.95
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.95
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.95
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 99.95
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.95
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 99.95
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.94
PTZ00424401 helicase 45; Provisional 99.94
PRK13767 876 ATP-dependent helicase; Provisional 99.93
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.93
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.93
KOG1123776 consensus RNA polymerase II transcription initiati 99.93
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.93
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.92
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.92
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.91
PRK10689 1147 transcription-repair coupling factor; Provisional 99.91
PRK02362 737 ski2-like helicase; Provisional 99.9
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.89
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.89
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.89
KOG0343 758 consensus RNA Helicase [RNA processing and modific 99.89
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 99.89
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 99.88
PRK01172 674 ski2-like helicase; Provisional 99.88
PRK00254 720 ski2-like helicase; Provisional 99.88
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.87
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.86
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.86
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.86
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.86
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.86
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.85
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.85
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.85
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.84
TIGR03714 762 secA2 accessory Sec system translocase SecA2. Memb 99.84
KOG0347731 consensus RNA helicase [RNA processing and modific 99.84
KOG4284 980 consensus DEAD box protein [Transcription] 99.84
PRK09200 790 preprotein translocase subunit SecA; Reviewed 99.83
PHA02653675 RNA helicase NPH-II; Provisional 99.82
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 99.82
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.82
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.82
PRK09401 1176 reverse gyrase; Reviewed 99.82
COG4096 875 HsdR Type I site-specific restriction-modification 99.81
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.8
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.8
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.8
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.79
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.78
COG1205 851 Distinct helicase family with a unique C-terminal 99.78
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.77
COG1204 766 Superfamily II helicase [General function predicti 99.76
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.76
COG1202 830 Superfamily II helicase, archaea-specific [General 99.76
PRK05580679 primosome assembly protein PriA; Validated 99.76
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.74
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 99.74
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.74
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.73
PRK09694878 helicase Cas3; Provisional 99.73
KOG0346569 consensus RNA helicase [RNA processing and modific 99.73
PRK14701 1638 reverse gyrase; Provisional 99.72
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.71
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.71
KOG0334 997 consensus RNA helicase [RNA processing and modific 99.7
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.7
COG1197 1139 Mfd Transcription-repair coupling factor (superfam 99.69
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.67
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 99.67
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.67
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.66
KOG0352 641 consensus ATP-dependent DNA helicase [Replication, 99.66
PRK12904 830 preprotein translocase subunit SecA; Reviewed 99.66
COG4889 1518 Predicted helicase [General function prediction on 99.65
KOG0327397 consensus Translation initiation factor 4F, helica 99.64
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.63
smart00487201 DEXDc DEAD-like helicases superfamily. 99.63
PRK13107 908 preprotein translocase subunit SecA; Reviewed 99.6
KOG0353 695 consensus ATP-dependent DNA helicase [General func 99.6
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.6
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.59
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.58
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.58
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.58
PRK05298652 excinuclease ABC subunit B; Provisional 99.54
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 99.54
smart0049082 HELICc helicase superfamily c-terminal domain. 99.5
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.45
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.44
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.44
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 99.43
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.43
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.43
PF11496297 HDA2-3: Class II histone deacetylase complex subun 99.4
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.38
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.29
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.23
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 99.22
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 99.2
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 99.15
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.13
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.05
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.05
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 99.03
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.0
COG1198730 PriA Primosomal protein N' (replication factor Y) 98.99
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 98.94
CHL00122 870 secA preprotein translocase subunit SecA; Validate 98.9
TIGR00604 705 rad3 DNA repair helicase (rad3). All proteins in t 98.78
KOG0953 700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 98.78
COG0610 962 Type I site-specific restriction-modification syst 98.78
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 98.76
KOG0922 674 consensus DEAH-box RNA helicase [RNA processing an 98.73
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 98.73
KOG0924 1042 consensus mRNA splicing factor ATP-dependent RNA h 98.72
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 98.71
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 98.71
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 98.71
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 98.68
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.67
KOG0950 1008 consensus DNA polymerase theta/eta, DEAD-box super 98.65
KOG0920 924 consensus ATP-dependent RNA helicase A [RNA proces 98.64
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 98.64
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.63
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 98.55
PRK15483 986 type III restriction-modification system StyLTI en 98.54
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 98.52
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 98.51
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 98.38
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.37
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.37
PF13871278 Helicase_C_4: Helicase_C-like 98.36
KOG0923 902 consensus mRNA splicing factor ATP-dependent RNA h 98.34
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 98.1
COG0653 822 SecA Preprotein translocase subunit SecA (ATPase, 98.0
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.92
PF13892139 DBINO: DNA-binding domain 97.86
KOG0925 699 consensus mRNA splicing factor ATP-dependent RNA h 97.69
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 97.65
PRK10536262 hypothetical protein; Provisional 97.65
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 97.58
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 97.44
KOG1803649 consensus DNA helicase [Replication, recombination 97.23
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 97.22
PRK14873665 primosome assembly protein PriA; Provisional 97.17
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 97.14
TIGR00376637 DNA helicase, putative. The gene product may repre 97.11
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.04
COG0553 866 HepA Superfamily II DNA/RNA helicases, SNF2 family 97.03
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 96.97
COG3587 985 Restriction endonuclease [Defense mechanisms] 96.97
KOG1131 755 consensus RNA polymerase II transcription initiati 96.87
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.77
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 96.72
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 96.66
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 96.63
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 96.56
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 96.5
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 96.46
PRK04296190 thymidine kinase; Provisional 96.39
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 96.36
PRK09112351 DNA polymerase III subunit delta'; Validated 96.15
smart00382148 AAA ATPases associated with a variety of cellular 95.94
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 95.88
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 95.86
PLN03025319 replication factor C subunit; Provisional 95.79
COG3421 812 Uncharacterized protein conserved in bacteria [Fun 95.59
PRK10875615 recD exonuclease V subunit alpha; Provisional 95.58
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 95.58
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 95.57
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 95.57
PRK12402337 replication factor C small subunit 2; Reviewed 95.5
CHL00181287 cbbX CbbX; Provisional 95.5
PRK11773 721 uvrD DNA-dependent helicase II; Provisional 95.45
PRK07940394 DNA polymerase III subunit delta'; Validated 95.28
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 95.21
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 95.2
PRK12323 700 DNA polymerase III subunits gamma and tau; Provisi 95.14
KOG18051100 consensus DNA replication helicase [Replication, r 95.11
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 95.09
PRK06526254 transposase; Provisional 95.0
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 94.98
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 94.86
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 94.85
PRK05707328 DNA polymerase III subunit delta'; Validated 94.81
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 94.78
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 94.69
PRK08181269 transposase; Validated 94.57
TIGR01073 726 pcrA ATP-dependent DNA helicase PcrA. Designed to 94.52
PRK14960 702 DNA polymerase III subunits gamma and tau; Provisi 94.5
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 94.47
PRK06871325 DNA polymerase III subunit delta'; Validated 94.44
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 94.27
PRK08769319 DNA polymerase III subunit delta'; Validated 94.2
PF13173128 AAA_14: AAA domain 94.16
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 94.13
PRK07993334 DNA polymerase III subunit delta'; Validated 94.07
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 94.06
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 94.03
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 94.03
PRK08691 709 DNA polymerase III subunits gamma and tau; Validat 93.99
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 93.97
PRK08058329 DNA polymerase III subunit delta'; Validated 93.95
PRK06090319 DNA polymerase III subunit delta'; Validated 93.93
PHA02533534 17 large terminase protein; Provisional 93.84
PF1324576 AAA_19: Part of AAA domain 93.81
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 93.77
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 93.74
PRK07471365 DNA polymerase III subunit delta'; Validated 93.55
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 93.44
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 93.44
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 93.41
PRK00149450 dnaA chromosomal replication initiation protein; R 93.41
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 93.4
TIGR02928365 orc1/cdc6 family replication initiation protein. M 93.31
PHA03372668 DNA packaging terminase subunit 1; Provisional 93.29
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 93.28
PHA02544316 44 clamp loader, small subunit; Provisional 93.26
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 93.19
PHA03368738 DNA packaging terminase subunit 1; Provisional 93.18
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 92.98
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 92.87
TIGR01075 715 uvrD DNA helicase II. Designed to identify uvrD me 92.86
PRK00440319 rfc replication factor C small subunit; Reviewed 92.86
PRK06835329 DNA replication protein DnaC; Validated 92.84
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 92.82
PRK07952244 DNA replication protein DnaC; Validated 92.79
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 92.79
PRK08084235 DNA replication initiation factor; Provisional 92.7
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 92.65
TIGR00362405 DnaA chromosomal replication initiator protein Dna 92.63
PRK14974336 cell division protein FtsY; Provisional 92.6
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 92.54
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 92.53
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 92.47
TIGR01074664 rep ATP-dependent DNA helicase Rep. Designed to id 92.45
smart00491142 HELICc2 helicase superfamily c-terminal domain. 92.42
PRK05986191 cob(I)alamin adenolsyltransferase/cobinamide ATP-d 92.4
cd01124187 KaiC KaiC is a circadian clock protein primarily f 92.35
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 92.3
PRK14088440 dnaA chromosomal replication initiation protein; P 92.12
PRK08116268 hypothetical protein; Validated 92.01
PRK09165497 replicative DNA helicase; Provisional 91.81
PRK06964342 DNA polymerase III subunit delta'; Validated 91.8
PRK08727233 hypothetical protein; Validated 91.76
PRK08760476 replicative DNA helicase; Provisional 91.73
PRK10917 681 ATP-dependent DNA helicase RecG; Provisional 91.64
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 91.53
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 91.29
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 91.23
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 91.09
COG0470325 HolB ATPase involved in DNA replication [DNA repli 91.09
PRK14087450 dnaA chromosomal replication initiation protein; P 91.06
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 91.0
PRK00411394 cdc6 cell division control protein 6; Reviewed 90.97
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 90.96
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 90.89
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 90.89
PRK06921266 hypothetical protein; Provisional 90.83
PRK14086617 dnaA chromosomal replication initiation protein; P 90.63
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 90.55
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 90.53
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 90.48
TIGR00595 505 priA primosomal protein N'. All proteins in this f 90.46
PRK06904472 replicative DNA helicase; Validated 90.38
PRK06893229 DNA replication initiation factor; Validated 90.38
TIGR00665434 DnaB replicative DNA helicase. This model describe 90.27
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 90.09
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 90.01
PRK07133 725 DNA polymerase III subunits gamma and tau; Validat 90.0
cd00561159 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B 89.98
PRK05642234 DNA replication initiation factor; Validated 89.83
PRK08533230 flagellar accessory protein FlaH; Reviewed 89.82
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 89.74
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 89.58
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 89.42
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 89.4
PRK05748448 replicative DNA helicase; Provisional 89.35
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 89.34
PRK07276290 DNA polymerase III subunit delta'; Validated 89.08
PHA03333752 putative ATPase subunit of terminase; Provisional 89.0
PRK13342413 recombination factor protein RarA; Reviewed 88.96
PRK05580 679 primosome assembly protein PriA; Validated 88.91
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 88.87
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 88.86
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 88.85
PF00004132 AAA: ATPase family associated with various cellula 88.81
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 88.8
PRK10865 857 protein disaggregation chaperone; Provisional 88.78
PRK04132846 replication factor C small subunit; Provisional 88.73
PRK08903227 DnaA regulatory inactivator Hda; Validated 88.68
PRK13889 988 conjugal transfer relaxase TraA; Provisional 88.66
PRK08506472 replicative DNA helicase; Provisional 88.63
PRK00771437 signal recognition particle protein Srp54; Provisi 88.54
TIGR00643 630 recG ATP-dependent DNA helicase RecG. 88.5
PRK12422445 chromosomal replication initiation protein; Provis 88.38
PTZ001121164 origin recognition complex 1 protein; Provisional 88.32
PRK08840464 replicative DNA helicase; Provisional 88.25
PRK11054684 helD DNA helicase IV; Provisional 88.19
PRK08006471 replicative DNA helicase; Provisional 88.17
PRK09183259 transposase/IS protein; Provisional 88.14
TIGR03880224 KaiC_arch_3 KaiC domain protein, AF_0351 family. T 87.91
PRK04195482 replication factor C large subunit; Provisional 87.76
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 87.62
COG0305435 DnaB Replicative DNA helicase [DNA replication, re 87.62
PRK05595444 replicative DNA helicase; Provisional 87.56
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 87.51
PTZ00293211 thymidine kinase; Provisional 87.44
CHL00095821 clpC Clp protease ATP binding subunit 87.26
PRK10867433 signal recognition particle protein; Provisional 87.21
PRK07004460 replicative DNA helicase; Provisional 86.95
COG0541451 Ffh Signal recognition particle GTPase [Intracellu 86.92
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 86.85
PRK05973237 replicative DNA helicase; Provisional 86.84
PF07015231 VirC1: VirC1 protein; InterPro: IPR009744 This fam 86.27
PRK06321472 replicative DNA helicase; Provisional 86.25
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 86.03
PRK06067234 flagellar accessory protein FlaH; Validated 85.98
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 85.95
cd03115173 SRP The signal recognition particle (SRP) mediates 85.94
KOG0780483 consensus Signal recognition particle, subunit Srp 85.91
PRK14873 665 primosome assembly protein PriA; Provisional 85.71
PRK05636505 replicative DNA helicase; Provisional 85.64
PRK07399314 DNA polymerase III subunit delta'; Validated 85.61
TIGR03346 852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 85.37
COG0464494 SpoVK ATPases of the AAA+ class [Posttranslational 85.28
PRK11823446 DNA repair protein RadA; Provisional 85.24
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 85.15
PRK05564313 DNA polymerase III subunit delta'; Validated 85.13
COG2256436 MGS1 ATPase related to the helicase subunit of the 84.97
COG0552340 FtsY Signal recognition particle GTPase [Intracell 84.77
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 84.72
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 84.52
PRK13833323 conjugal transfer protein TrbB; Provisional 84.48
KOG0991333 consensus Replication factor C, subunit RFC2 [Repl 84.47
PF02606326 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPr 84.39
TIGR00959428 ffh signal recognition particle protein. This mode 84.21
COG1484254 DnaC DNA replication protein [DNA replication, rec 83.94
PRK13826 1102 Dtr system oriT relaxase; Provisional 83.85
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 83.8
PF03796259 DnaB_C: DnaB-like helicase C terminal domain; Inte 83.8
KOG0740428 consensus AAA+-type ATPase [Posttranslational modi 83.8
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 83.74
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 83.64
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 83.52
PRK10416318 signal recognition particle-docking protein FtsY; 83.41
TIGR00580 926 mfd transcription-repair coupling factor (mfd). Al 83.4
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 83.38
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 83.24
KOG0737386 consensus AAA+-type ATPase [Posttranslational modi 83.22
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 83.14
PRK10919 672 ATP-dependent DNA helicase Rep; Provisional 83.05
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 82.89
smart00492141 HELICc3 helicase superfamily c-terminal domain. 82.71
PRK07773 886 replicative DNA helicase; Validated 82.47
TIGR00064272 ftsY signal recognition particle-docking protein F 82.45
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 82.32
COG1198 730 PriA Primosomal protein N' (replication factor Y) 81.98
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 81.66
TIGR00767415 rho transcription termination factor Rho. Members 81.55
COG3972660 Superfamily I DNA and RNA helicases [General funct 81.32
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 81.23
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 81.22
COG0593408 DnaA ATPase involved in DNA replication initiation 80.99
COG0003322 ArsA Predicted ATPase involved in chromosome parti 80.97
PRK08699325 DNA polymerase III subunit delta'; Validated 80.75
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 80.69
PRK13894319 conjugal transfer ATPase TrbB; Provisional 80.44
PRK10689 1147 transcription-repair coupling factor; Provisional 80.31
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 80.22
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-133  Score=1076.03  Aligned_cols=601  Identities=48%  Similarity=0.823  Sum_probs=509.5

Q ss_pred             ccchhhhhhhHHHHhhhHHHHHHHhhhhhhhccccccccCCcccccCCCCCCCccCcccchhhHHHHHHHHHhccccccc
Q 004880           49 HLNDLQFNKLDELLTQTQMYAEFLLEKMEDITVNGVEQESEPVGKKKGRGSKRKAAPQCNTRKAKRAVAAMLTRSKEGEK  128 (725)
Q Consensus        49 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (725)
                      .+..++++|+++|+.+|+.|+||+..++.+...........+       .+++++   +...+.........+...++.+
T Consensus        70 ~~~~~~~kr~e~Ll~~te~f~~f~~~~~~~~~~~~~~~~~~~-------~~k~~~---~~~~~~~~~~~~r~te~eed~e  139 (971)
T KOG0385|consen   70 KMKADQAKRFEKLLKQTELFQHFIQPKAQKIDTKPLMELLRP-------RKKNDA---KKKESSSGDVRHRKTEQEEDEE  139 (971)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccchhhcCcccccchhccc-------hhhccc---hhccccccccccccccccchHH
Confidence            345778999999999999999999998765543322110111       000000   0000000011111111111111


Q ss_pred             cccccchhhhhhhhhh-hhhcccccCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCC
Q 004880          129 TENENLSEEERVDKEQ-RELVSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGP  206 (725)
Q Consensus       129 ~~~~~~~~~~~~~~~~-~~~~p~~~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~-~~~~~~  206 (725)
                      ...+...++......+ ...|.+..++.|||||++|++||+.+|++|.|||||||||||||+|+|+++.++.. .+..||
T Consensus       140 ~~~~~~~e~~~~~~~~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GP  219 (971)
T KOG0385|consen  140 LLKEEEKEEETTVQNRFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGP  219 (971)
T ss_pred             HHHHhhhhhhhhhhccccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCC
Confidence            1111111111111111 11234566799999999999999999999999999999999999999999999998 788999


Q ss_pred             cEEEEcCccHHHHHHHHHHhCCCceEEEEeCChhhHHHHHHhcCCCCCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEE
Q 004880          207 YLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVV  286 (725)
Q Consensus       207 ~LIV~P~sll~~W~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIv  286 (725)
                      +||+||.|+++||.+||++|+|++++++|+|++.+|..+++..+..   ..|+|+||||++++++ +.+|.+++|.|+||
T Consensus       220 fLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~---~~fdV~iTsYEi~i~d-k~~lk~~~W~ylvI  295 (971)
T KOG0385|consen  220 FLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLP---GRFDVCITSYEIAIKD-KSFLKKFNWRYLVI  295 (971)
T ss_pred             eEEEeeHhhHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhcc---CCCceEeehHHHHHhh-HHHHhcCCceEEEe
Confidence            9999999999999999999999999999999999999998887644   3899999999999999 69999999999999


Q ss_pred             ccccccCCcchHHHHHHhcCCCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHH
Q 004880          287 DEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEK  366 (725)
Q Consensus       287 DEaH~ikn~~s~~~~~l~~l~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~  366 (725)
                      ||||||||.+|.+++.++.+.+.+||||||||+|||+.|||+||||+.|++|++.++|.+||.......           
T Consensus       296 DEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~-----------  364 (971)
T KOG0385|consen  296 DEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEG-----------  364 (971)
T ss_pred             chhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccccc-----------
Confidence            999999999999999999999999999999999999999999999999999999999999998763222           


Q ss_pred             HHHHHHHHHHHhhhhhhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHH
Q 004880          367 RRGQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLM  446 (725)
Q Consensus       367 ~~~~~~~~L~~~l~p~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l  446 (725)
                       ....+.+||.+|+||++||+|.+|+..||||+|.++||.||+.|+++|..++.+.+.....     .+......++|++
T Consensus       365 -~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~-----~~~~~k~kL~NI~  438 (971)
T KOG0385|consen  365 -DQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNG-----EGKGEKTKLQNIM  438 (971)
T ss_pred             -CHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcc-----cccchhhHHHHHH
Confidence             1247889999999999999999999999999999999999999999999999888766532     2222478999999


Q ss_pred             HHHHHhcCChhhhhhhccCCCCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEE
Q 004880          447 VQLRKNCNHPDLLESAFSDSCFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRI  526 (725)
Q Consensus       447 ~~Lr~~~~hp~l~~~~~~~~~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l  526 (725)
                      |+||+|||||||+.+. .+.+.|...++++.+|||+.+|+++|.++.++||||||||||+.|+|+|++||..+||.||||
T Consensus       439 mQLRKccnHPYLF~g~-ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRi  517 (971)
T KOG0385|consen  439 MQLRKCCNHPYLFDGA-EPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRL  517 (971)
T ss_pred             HHHHHhcCCccccCCC-CCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEee
Confidence            9999999999999994 444789999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCHHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEec
Q 004880          527 DGSVRLDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLAT  606 (725)
Q Consensus       527 ~G~~~~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~  606 (725)
                      ||+++.++|...|+.||.+++..+|||+||+|||+||||++||+||+||++|||++++||++|||||||+|+|+||||+|
T Consensus       518 DGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit  597 (971)
T KOG0385|consen  518 DGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT  597 (971)
T ss_pred             cCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec
Confidence            99999999999999999988899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccCCHHHHHHhhcchhhhhhhhhcCCCCHHHHHHHHhhhhcc
Q 004880          607 AQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKMIQTDIGEEDLERVLDRADLI  686 (725)
Q Consensus       607 ~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  686 (725)
                      ++||||+|++|+..|++|.+.||++|.....  .++   .+..+++..+++.+++......++.+++ ||+++|.++..-
T Consensus       598 entVEe~IveRA~~KL~Ld~~VIq~g~l~~~--~~~---~~~k~~~l~~~r~g~~~~f~~~es~~~d-Did~il~~~e~k  671 (971)
T KOG0385|consen  598 ENTVEEKIVERAAAKLRLDKLVIQQGRLEEQ--KSN---GLGKDELLNLLRFGADPVFESKESTISD-DIDRILERGEEK  671 (971)
T ss_pred             cchHHHHHHHHHHHHhchhhhhhccCchhhh--hcc---ccchHHHHHHHHcCchhhhhhcccccch-hHHHHHHhhhhh
Confidence            9999999999999999999999999843322  222   3567899999999998877777788888 999999998754


Q ss_pred             c
Q 004880          687 A  687 (725)
Q Consensus       687 ~  687 (725)
                      .
T Consensus       672 t  672 (971)
T KOG0385|consen  672 T  672 (971)
T ss_pred             c
Confidence            3

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PF13892 DBINO: DNA-binding domain Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PHA03372 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK09165 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>TIGR00665 DnaB replicative DNA helicase Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>PRK05748 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07276 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PRK08506 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK08840 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PRK08006 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05595 replicative DNA helicase; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PRK07004 replicative DNA helicase; Provisional Back     alignment and domain information
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins Back     alignment and domain information
>PRK06321 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PRK05636 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK05564 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] Back     alignment and domain information
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability [] Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork Back     alignment and domain information
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK07773 replicative DNA helicase; Validated Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only] Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK08699 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query725
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 2e-96
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 2e-63
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 4e-61
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 5e-47
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 1e-18
3dmq_A 968 Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT 7e-04
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure 
Iteration: 1

 Score =  350 bits (898), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 193/499 (38%), Positives = 288/499 (57%), Gaps = 37/499 (7%)
Query: 150 LLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLK-GNGLHGPYL 208
            + GG+L+ +QL G+ W+  LW  G NGILAD+MGLGKT+QT+AF++ L      +GP++
Sbjct: 231 FIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHI 290
Query: 209 VIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHM---PRAIGPK---FPIVV 262
           ++ PLST+  W++   ++ P ++ I Y G++K RD IR       PRA G K   F +++
Sbjct: 291 IVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLL 350
Query: 263 TSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNN 322
           T+YE  L D R  L    W+++ VDE HRLKN +  L + L    + N++L+TGTPLQNN
Sbjct: 351 TTYEYILKD-RAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNN 409
Query: 323 LAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPF 382
           + EL +L++F++P  F+          +  + + E   EE EE      +  LH  ++PF
Sbjct: 410 IKELAALVNFLMPGRFT----------IDQEIDFENQDEEQEE-----YIHDLHRRIQPF 454
Query: 383 LLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKL 442
           +LRR+K DVE+ LP K E IL   +++ Q  +  +++ K         + +  +G    L
Sbjct: 455 ILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYS-----ALTAGAKGGHFSL 509
Query: 443 NNLMVQLRKNCNHPDLLESA-------FSDSCFYPP--VEQIVEQCGKXXXXXXXXXXXX 493
            N+M +L+K  NHP L ++A       F D        +  ++   GK            
Sbjct: 510 LNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLK 569
Query: 494 XXNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQIQDFNDVNSSYRIFL 553
              H+VL+FSQ  ++LDI+  Y + KG    R+DG+V   +R+  I  FN  +S+  +FL
Sbjct: 570 KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFL 629
Query: 554 LSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGR 613
           LSTRAGGLGINL  ADT +++DSDWNPQ DLQAM R HRIGQ   V VYRL +  +VE  
Sbjct: 630 LSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEE 689
Query: 614 ILKRAFSKLKLEHVVIGKG 632
           +L+RA  K+ LE+ +I  G
Sbjct: 690 VLERARKKMILEYAIISLG 708
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT Recycles Rna Polymerase During Transcription Length = 968 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query725
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 0.0
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 0.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-144
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 6e-88
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 5e-66
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 1e-63
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 2e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 7e-18
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 7e-08
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 2e-05
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 9e-05
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 2e-04
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 2e-04
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 8e-04
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
 Score =  714 bits (1844), Expect = 0.0
 Identities = 213/698 (30%), Positives = 349/698 (50%), Gaps = 52/698 (7%)

Query: 17  ISKDMEEEEKKLLEARADEENVEQENVSKNEDHLNDLQFNKLDELLTQTQMYAEFLLEKM 76
             + + E+++  L+     E++E  ++ +        +F+  + ++   +   E    ++
Sbjct: 107 CKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQL 166

Query: 77  EDITVNGVEQESEPVGKKKGRGSKRKAAPQCNTRKAKRAVAAMLTRSKEGEKTENENLSE 136
           + +         E   +      K           A   V     R       +  +   
Sbjct: 167 QYLVKWRRLNYDEATWENATDIVK----------LAPEQVKHFQNRENSKILPQYSSNYT 216

Query: 137 EERVDKEQ-RELVSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFL 195
            +R   E+       + GG+L+ +QL G+ W+  LW  G NGILAD+MGLGKT+QT+AF+
Sbjct: 217 SQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFI 276

Query: 196 AHLKGN-GLHGPYLVIAPLSTLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHM---- 250
           + L      +GP++++ PLST+  W++   ++ P ++ I Y G++K RD IR        
Sbjct: 277 SWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNP 336

Query: 251 --PRAIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPI 308
                   KF +++T+YE  L D R  L    W+++ VDE HRLKN +  L + L    +
Sbjct: 337 RAKGKKTMKFNVLLTTYEYILKD-RAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKV 395

Query: 309 GNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRR 368
            N++L+TGTPLQNN+ EL +L++F++P  F+  +E                    +++ +
Sbjct: 396 ANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN---------------QDEEQ 440

Query: 369 GQMVAKLHAILRPFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLR 428
            + +  LH  ++PF+LRR+K DVE+ LP K E IL   +++ Q  +  +++ K       
Sbjct: 441 EEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKN-----Y 495

Query: 429 EKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDSCFYP---------PVEQIVEQC 479
             + +  +G    L N+M +L+K  NHP L ++A                  +  ++   
Sbjct: 496 SALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSS 555

Query: 480 GKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKRQI 539
           GK  LLD+LL RL    H+VL+FSQ  ++LDI+  Y + KG    R+DG+V   +R+  I
Sbjct: 556 GKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISI 615

Query: 540 QDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPV 599
             FN  +S+  +FLLSTRAGGLGINL  ADT +++DSDWNPQ DLQAM R HRIGQ   V
Sbjct: 616 DHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHV 675

Query: 600 HVYRLATAQSVEGRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQ-- 657
            VYRL +  +VE  +L+RA  K+ LE+ +I  G     +      +     +L A+L+  
Sbjct: 676 MVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKK--NEPNAGELSAILKFG 733

Query: 658 DEETAEDKMIQTDIGEEDLERVLDRADLIAGCLDDEEK 695
                     Q  + + +L+ VL+ A+      D  E 
Sbjct: 734 AGNMFTATDNQKKLEDLNLDDVLNHAEDHVTTPDLGES 771
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query725
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 100.0
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 100.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 100.0
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
3h1t_A590 Type I site-specific restriction-modification syst 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 99.97
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 99.97
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 99.97
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 99.97
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 99.97
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 99.97
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 99.97
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 99.97
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 99.96
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 99.96
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 99.96
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 99.95
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 99.95
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 99.95
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.95
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 99.94
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 99.94
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 99.93
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 99.93
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 99.93
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 99.92
2w00_A 1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.91
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 99.91
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 99.87
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 99.84
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 99.83
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 99.82
1tf5_A 844 Preprotein translocase SECA subunit; ATPase, helic 99.82
1yks_A440 Genome polyprotein [contains: flavivirin protease 99.82
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 99.82
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 99.8
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.8
2fsf_A 853 Preprotein translocase SECA subunit; ATPase, DNA-R 99.8
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.79
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.79
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.79
3rc3_A 677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 99.78
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.78
1nkt_A 922 Preprotein translocase SECA 1 subunit; preprotein 99.78
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 99.78
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.77
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.76
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.76
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.76
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 99.76
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 99.76
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.74
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.71
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.71
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.55
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 99.7
3jux_A 822 Protein translocase subunit SECA; protein transloc 99.69
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.69
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.68
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 99.67
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 99.66
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.66
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 99.65
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 99.64
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 99.64
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 99.64
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 99.6
3bor_A237 Human initiation factor 4A-II; translation initiat 99.59
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 99.55
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 99.53
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 99.52
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 99.51
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.4
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 99.39
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 99.37
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 98.89
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 98.79
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 98.12
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 97.44
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 97.34
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 97.31
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 97.29
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 97.09
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 97.06
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 97.0
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 96.95
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 96.66
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 96.54
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 96.2
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 96.13
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 95.98
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 95.88
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 95.68
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 95.67
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 95.34
2chg_A226 Replication factor C small subunit; DNA-binding pr 95.31
1uaa_A673 REP helicase, protein (ATP-dependent DNA helicase 95.29
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 94.85
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 94.68
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 94.41
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 94.13
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 94.13
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 93.81
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 93.79
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 93.78
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 93.63
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 93.36
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 93.19
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 92.92
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 92.91
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 92.84
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 92.54
2gno_A305 DNA polymerase III, gamma subunit-related protein; 92.52
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 92.34
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 92.24
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 92.17
2v1u_A387 Cell division control protein 6 homolog; DNA repli 92.05
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 91.99
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 91.84
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 91.77
3bos_A242 Putative DNA replication factor; P-loop containing 91.77
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 91.44
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 91.32
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 91.16
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 91.03
2r6a_A454 DNAB helicase, replicative helicase; replication, 90.81
3co5_A143 Putative two-component system transcriptional RES 90.64
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 90.4
2zan_A444 Vacuolar protein sorting-associating protein 4B; S 90.22
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 90.18
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 90.07
3vfd_A389 Spastin; ATPase, microtubule severing, hydrolase; 89.7
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 89.63
1ojl_A304 Transcriptional regulatory protein ZRAR; response 89.58
2chq_A319 Replication factor C small subunit; DNA-binding pr 89.55
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 88.97
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 88.55
1xp8_A366 RECA protein, recombinase A; recombination, radior 88.27
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 88.1
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 87.82
3d8b_A357 Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s 87.72
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 87.23
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 86.98
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 86.89
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 86.74
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 86.53
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 86.43
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 86.35
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 86.34
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 86.31
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 85.9
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 85.74
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 85.51
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 85.45
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 85.29
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 84.63
3k1j_A604 LON protease, ATP-dependent protease LON; ATP-bind 84.59
3pvs_A447 Replication-associated recombination protein A; ma 84.4
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 84.29
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 83.52
1r6b_X758 CLPA protein; AAA+, N-terminal domain, CLPS, cryst 83.29
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 83.06
1gm5_A 780 RECG; helicase, replication restart; HET: DNA ADP; 82.99
1u94_A356 RECA protein, recombinase A; homologous recombinat 82.98
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 82.69
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 82.49
2cvh_A220 DNA repair and recombination protein RADB; filamen 82.26
3hu3_A489 Transitional endoplasmic reticulum ATPase; VCP, tr 82.15
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 82.06
3hjh_A483 Transcription-repair-coupling factor; MFD, mutatio 81.79
2ce7_A476 Cell division protein FTSH; metalloprotease; HET: 81.19
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 80.45
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 80.42
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=3.3e-86  Score=787.98  Aligned_cols=520  Identities=38%  Similarity=0.642  Sum_probs=427.5

Q ss_pred             cccccCCcccchHHHHHHHHHHHhcCCCCeEEEcCCCCcHHHHHHHHHHHHHh-CCCCCCcEEEEcCccHHHHHHHHHHh
Q 004880          148 VSLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKG-NGLHGPYLVIAPLSTLSNWVNEISRF  226 (725)
Q Consensus       148 ~p~~~~~~Lr~yQ~~gv~~l~~~~~~~~~~ILademGlGKT~qaiali~~l~~-~~~~~~~LIV~P~sll~~W~~E~~~~  226 (725)
                      +|...+++|||||++||+||+..+.++.||||||+||+|||+|+|+++.++.. .+..+|+|||||.+++.||.+||.+|
T Consensus       229 p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~  308 (800)
T 3mwy_W          229 PPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKW  308 (800)
T ss_dssp             CTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHH
T ss_pred             CCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHH
Confidence            56677899999999999999999999999999999999999999999998864 45678999999999999999999999


Q ss_pred             CCCceEEEEeCChhhHHHHHHhcCCC------CCCCCCCEEEecHHHHHHHHHHhhhhcCccEEEEccccccCCcchHHH
Q 004880          227 VPSVSAIIYHGSKKERDEIRRKHMPR------AIGPKFPIVVTSYEVALSDARKYLRHYNWKYLVVDEGHRLKNPKCKLL  300 (725)
Q Consensus       227 ~p~~~v~~~~g~~~~r~~~~~~~~~~------~~~~~~~vvItsye~~~~~~~~~l~~~~~~~vIvDEaH~ikn~~s~~~  300 (725)
                      +|++.+++|+|+...+..++...+..      .....++|+||||+++.++. ..+...+|++|||||||++||..++.+
T Consensus       309 ~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~-~~l~~~~w~~vIvDEaH~lkn~~s~~~  387 (800)
T 3mwy_W          309 APDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR-AELGSIKWQFMAVDEAHRLKNAESSLY  387 (800)
T ss_dssp             STTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH-HHHHTSEEEEEEETTGGGGCCSSSHHH
T ss_pred             CCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH-HHHhcCCcceeehhhhhhhcCchhHHH
Confidence            99999999999999888776654322      23357899999999999885 678888999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEeccCCCCChHHhhhhhccccCCCCCCHHHHHHHhcccCCCchhhhHHHHHHHHHHHHHHHHHHhhh
Q 004880          301 KELKYIPIGNKLLLTGTPLQNNLAELWSLLHFILPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILR  380 (725)
Q Consensus       301 ~~l~~l~~~~rllLTgTP~~n~~~el~sll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~  380 (725)
                      +++..+++.+||+|||||++|++.|||++++||.|+.|.....|....    ..           ......+..|+.+++
T Consensus       388 ~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~----~~-----------~~~~~~~~~L~~~l~  452 (800)
T 3mwy_W          388 ESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN----QD-----------EEQEEYIHDLHRRIQ  452 (800)
T ss_dssp             HHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C----CT-----------THHHHHHHHHHHTTG
T ss_pred             HHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc----cc-----------hhHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998666553211    10           011245778999999


Q ss_pred             hhhhheehhhHhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhh
Q 004880          381 PFLLRRMKSDVEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLE  460 (725)
Q Consensus       381 p~~lRR~k~dv~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~  460 (725)
                      |+++||++.++...+|++.+.+++|+||+.|+.+|..++........     ....+....+.+.++.||++|+||+++.
T Consensus       453 p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~-----~~~~~~~~~~l~~l~~Lrk~~~hp~l~~  527 (800)
T 3mwy_W          453 PFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALT-----AGAKGGHFSLLNIMNELKKASNHPYLFD  527 (800)
T ss_dssp             GGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---------------CTHHHHHHHHHHHHHCGGGSS
T ss_pred             HHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHh-----hccccchhhHHHHHHHHHHHhcChhhhc
Confidence            99999999999999999999999999999999999998765432221     1122234568899999999999999986


Q ss_pred             hhccCC---------CCCCchHHHHHhhcHHHHHHHHHHHHhhCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCC
Q 004880          461 SAFSDS---------CFYPPVEQIVEQCGKFRLLDRLLARLFARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVR  531 (725)
Q Consensus       461 ~~~~~~---------~~~~~~~~l~~~s~K~~~L~~ll~~l~~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~  531 (725)
                      ......         ........++..|+|+..|.++|..+...|+||||||+++.++++|+.+|...|+++++++|+++
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~  607 (800)
T 3mwy_W          528 NAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVP  607 (800)
T ss_dssp             SHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSC
T ss_pred             chHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            543210         11112356778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCCHH
Q 004880          532 LDERKRQIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVE  611 (725)
Q Consensus       532 ~~~R~~~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiE  611 (725)
                      ..+|++++++|+++++..++||+||++||+||||++|++||+||++|||..+.||+||+||+||+++|+||+|++.+|+|
T Consensus       608 ~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiE  687 (800)
T 3mwy_W          608 SAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVE  687 (800)
T ss_dssp             HHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHH
T ss_pred             HHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHH
Confidence            99999999999997778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCccccccccccccccCCHHHHHHhhcchhhhhhhh--hcCCCCHHHHHHHHhhhhccccC
Q 004880          612 GRILKRAFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEETAEDKM--IQTDIGEEDLERVLDRADLIAGC  689 (725)
Q Consensus       612 e~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~  689 (725)
                      ++|++++..|..+.+.+++.+..........  ..++.++|.++|+.+...-...  .+..+.++||+.+|+++....+.
T Consensus       688 e~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~--~~~~~~el~~ll~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  765 (800)
T 3mwy_W          688 EEVLERARKKMILEYAIISLGVTDGNKYTKK--NEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAEDHVTT  765 (800)
T ss_dssp             HHHHHHHHHHTTSCC------------------CCCCHHHHHHHHSSCSSSSCCSHHHHHHHHTCCHHHHHHHCEECCCS
T ss_pred             HHHHHHHHHHHHHHHHHHccCcccccccccc--cCCCHHHHHHHHHcchHhhhhccCccccccccCHHHHHHhhhhcccc
Confidence            9999999999999999999877654332221  2578899999998776432211  11235677899999999877654


Q ss_pred             C
Q 004880          690 L  690 (725)
Q Consensus       690 ~  690 (725)
                      +
T Consensus       766 ~  766 (800)
T 3mwy_W          766 P  766 (800)
T ss_dssp             C
T ss_pred             c
Confidence            3
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Back     alignment and structure
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A Back     alignment and structure
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 725
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 5e-42
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 4e-41
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 1e-39
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 3e-28
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 1e-16
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 7e-15
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 1e-09
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 9e-06
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 0.002
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

 Score =  150 bits (379), Expect = 5e-42
 Identities = 86/239 (35%), Positives = 126/239 (52%), Gaps = 25/239 (10%)

Query: 154 GKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGNGLHGPYLVIAPL 213
             L+ YQ+KG  W+  + + G    LAD MGLGKT+QTIA  +  K      P LVI PL
Sbjct: 11  ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL 70

Query: 214 STLSNWVNEISRFVPSVSAIIYHGSKKERDEIRRKHMPRAIGPKFPIVVTSYEVALSDAR 273
           S L NW  E+S+F P +   ++H  + +                + I++T+Y V L D R
Sbjct: 71  SVLKNWEEELSKFAPHLRFAVFHEDRSKIKL-----------EDYDIILTTYAVLLRDTR 119

Query: 274 KYLRHYNWKYLVVDEGHRLKNPKCKLLKELKYIPIGNKLLLTGTPLQNNLAELWSLLHFI 333
             L+   WKY+V+DE   +KNP+ K+ K +K +    ++ LTGTP++N + +LWS++ F+
Sbjct: 120 --LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFL 177

Query: 334 LPDIFSSLEEFQSWFDLSGKCNSEVMKEELEEKRRGQMVAKLHAILRPFLLRRMKSDVE 392
            P +  S  EF+S F    K    + KEE            L AI+ PF+LRR K D  
Sbjct: 178 NPGLLGSYSEFKSKFATPIKKGDNMAKEE------------LKAIISPFILRRTKYDKA 224
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query725
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.89
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.85
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.84
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.84
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.84
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.83
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.82
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.8
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.79
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.77
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.77
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.74
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.72
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.67
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.64
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.61
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.5
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.48
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.47
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.46
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.41
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.37
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.36
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.3
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.3
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.28
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.27
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.27
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.22
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.22
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.17
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.12
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.11
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.1
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.07
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.05
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.93
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.44
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.37
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.54
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 97.21
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 96.96
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 96.93
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 96.53
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 96.45
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 95.47
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 95.33
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 95.12
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 94.76
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 93.73
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 93.5
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 92.83
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 92.79
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 91.52
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 91.41
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 91.21
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 90.94
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 90.37
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 90.33
d1vmaa2213 GTPase domain of the signal recognition particle r 90.08
d2qy9a2211 GTPase domain of the signal recognition particle r 90.07
d1okkd2207 GTPase domain of the signal recognition particle r 90.0
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 89.84
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 89.78
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 89.15
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 89.11
d1ls1a2207 GTPase domain of the signal sequence recognition p 87.79
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 86.69
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 86.4
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 85.54
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 85.04
d1j8yf2211 GTPase domain of the signal sequence recognition p 85.03
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 83.51
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 83.22
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 82.09
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=1.1e-45  Score=391.28  Aligned_cols=257  Identities=29%  Similarity=0.448  Sum_probs=214.4

Q ss_pred             HhhcCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhhhhcCCcchhHHHHHHHHHHHhcCChhhhhhhccCC----
Q 004880          391 VEQMLPRKKEIILYATMTEHQRNFQDHLINKTLENHLREKVFSAGRGMKGKLNNLMVQLRKNCNHPDLLESAFSDS----  466 (725)
Q Consensus       391 v~~~lP~k~e~~v~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~~~~hp~l~~~~~~~~----  466 (725)
                      +.++||||.+++++|+||+.|+.+|+.++.....     .............++.++.||++||||+|+.......    
T Consensus         5 l~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~-----~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~   79 (346)
T d1z3ix1           5 LSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKP-----VESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGF   79 (346)
T ss_dssp             GGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCG-----GGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTC
T ss_pred             hhccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHH-----HHhhhcCCchHHHHHHHHHHHHHhCCHHHhhhhhccccccc
Confidence            3468999999999999999999999998764311     1111122234567888999999999999975432110    


Q ss_pred             --------CCCCchHHHHHhhcHHHHHHHHHHHHh-hCCCcEEEEccchhHHHHHHHHHhhcCceEEEEeCCCCHHHHHH
Q 004880          467 --------CFYPPVEQIVEQCGKFRLLDRLLARLF-ARNHKVLVFSQWTKILDIMEYYFNEKGYEVCRIDGSVRLDERKR  537 (725)
Q Consensus       467 --------~~~~~~~~l~~~s~K~~~L~~ll~~l~-~~~~kvlIFsq~~~~ld~l~~~L~~~g~~~~~l~G~~~~~~R~~  537 (725)
                              ..+.........|+|+..|..+|..+. ..|+||||||+|+.++++|+.+|..+|++|++++|+++..+|..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~  159 (346)
T d1z3ix1          80 DGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAK  159 (346)
T ss_dssp             TTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHH
T ss_pred             cchhhhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHH
Confidence                    001111222456899999999998875 67899999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCceEEEEecccccCCCCCCCCCEEEEeCCCCCcchhhhHhHhhHhcCCCCceEEEEEecCCCHHHHHHHH
Q 004880          538 QIQDFNDVNSSYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILKR  617 (725)
Q Consensus       538 ~i~~F~~~~~~~~v~Llst~agg~GiNL~~a~~VI~~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrli~~~TiEe~i~~~  617 (725)
                      +++.||++++..+|||+||+|||+||||++|++||+||++|||..+.||+||+||+||+++|+||||++.||||++|+++
T Consensus       160 ~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~  239 (346)
T d1z3ix1         160 IVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQR  239 (346)
T ss_dssp             HHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHH
T ss_pred             HHHhhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCCCHHHHHHHH
Confidence            99999987667789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCccccccccccccccCCHHHHHHhhcchh
Q 004880          618 AFSKLKLEHVVIGKGQFHQERTKSNCIDALEEEDLLALLQDEE  660 (725)
Q Consensus       618 ~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~~~el~~ll~~~~  660 (725)
                      +..|..++..|++.+..        ....++.++|..|+.-.+
T Consensus       240 ~~~K~~l~~~v~~~~~~--------~~~~~~~~~l~~lf~~~~  274 (346)
T d1z3ix1         240 QAHKKALSSCVVDEEQD--------VERHFSLGELRELFSLNE  274 (346)
T ss_dssp             HHHHHHTSCCCCSCSSS--------CCCSSCHHHHHHHTCCCS
T ss_pred             HHHHHHHHHHHhCCchh--------hhhcCCHHHHHHHhcCCC
Confidence            99999999999986531        112578889999886543
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure