Citrus Sinensis ID: 004911

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720----
Protein Sequence
MCCGPDKSESNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSPRSSVSGASVMDMAAALLLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQSSRLRSSLSARDILPDDFSSLSDFDSQQHILNDLTCFSQARNNSVSLSRSCRPKTLTPSNLDELFSAEISSSPRFSDQAVFSPTHKSSVLNQFQQPHSMLSPIKTNVFSPKNVEHPLLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQREKQQQQLHSLSSRDPISNNPIPNIGSPRNVNSSWSKWGSPSGKLDWSIKGDELELLRRSSSCDLRNNNHEEPDLSWIHSIVKESPPEMMKEKTANPVVTTASSGEALNSNSQADSFDHSVIGAWLEQMQLDQLVV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHcccccHHHHHHHHHHccccccccccccccccHHHcccccHHHHHHHHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHccccccccccEEcccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccccccccccccccEEEEEcccccHHHHHHHHHHccccccHHHccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccEHEcccHHHHcccccccccccccEEEEEEcccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mccgpdksesntedmnnnstaeteDSFTSMLELASNNDVEGFKRMlerdpssvdevglwygrvngskqmvsehRTPLMVAATYGSVDVLKLILLHSSadvnvscgsdrttalhcaasggsanVVDVVRLLLSagadpdcvdanghhpidvivlppklDSMRAILEEVFGSKNSSVVVASGaehnltvsigssnsdyssplltasasgsppspsrlvsspmalkfndvsfgtgaekreypidpslpdiknsiyatdefrmfsfkirpcsrayshdwtecpfvhpgenarrrdprkfhyscvpcpdfrkgacrrgdmceyahgvfecwlhpaQYRTRLckdgtscdrrvCFFAHtaeelrplyvsngsvvpsprssvsgaSVMDMAAALllpgspssmsgmspnpfsqpmspsgngnlqssmmwpqpnvptlnlpgsniqssrlrsslsardilpddfsslsdfdsqqhILNDLTCfsqarnnsvslsrscrpktltpsnldelfsaeisssprfsdqavfspthkssvlnqfqqphsmlspiktnvfspknvehpllqasfrvgspgrmsprsvepispmgprLAAFAQREKQQQQLHslssrdpisnnpipnigsprnvnsswskwgspsgkldwsikgdeLELLRRssscdlrnnnheepdlswIHSIvkesppemmkektanpvvttassgealnsnsqadsfdHSVIGAWLEQMQLDQLVV
Flexible Loop (DISEMBL)
mccgpdksesntedmnnnstAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFgtgaekreypidpslpdiKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPfvhpgenarrrdprKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHtaeelrplyvsngsvvpsPRSSVSGASVMDMAAALLLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQSSRLRSSLSARDILPDDFSSLSDFDSQQHILNDLTCFSQARNNsvslsrscrpktltpsNLDELFSAEISSSPRFSDQAVFSPTHKSSVLNQFQQPHSMLSPIKTNVFSPKNVEHPLLQASfrvgspgrmsPRSVEPISPMGPRLAAFAQREKQQQQLhslssrdpisnnpipnigsprnvNSSWSKWGSPSGKLDWSIKGDELELLRRssscdlrnnnheepdlswihSIVKESPPEMMKEKTANPVVTTASSGEALNSNSQADSFDHSVIGAWLEQMQLDQLVV
Low Complexity Region (SEG)
MCCGPDKSESNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYssplltasasgsppspsrlvsspMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYvsngsvvpsprssvsgasvMDmaaalllpgspssmsgmspNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQssrlrsslsARDILPddfsslsdfdsQQHILNDLTCFSQARNNSVSLSRSCRPKTLTPSNLDELFSAEISSSPRFSDQAVFSPTHKSSVLNQFQQPHSMLSPIKTNVFSPKNVEHPLLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQREKQQQQLHSLSSRDPISNNPIPNIGSPRNVNsswskwgspsgkLDWSIKGDELELLRRSSSCDLRNNNHEEPDLSWIHSIVKESPPEMMKEKTANPVVTTASSGEALNSNSQADSFDHSVIGAWLEQMQLDQLVV
Disordered region (IsUnstruct)
*****************************************************DEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVA*****************************************************************LPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENAR*RDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSN******************************************************************************************************HILNDLTCF**********************************************************************************************************************************************************************************************I*****************************************SVIGAWLE*********
Disordered Region (DISOPRED)
******KSESNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEEL**************************************************************************************************************************************************************************************************************************************************************************************SIKGDELEL******************LSWIHSIVK*************************************VIGAWLEQMQLDQLVV
Disordered Region (DISEMBL)
***************************TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSP****************VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSPRSSVSGASVMDMAAALLLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQSSRLRSSLSARDILPDDFSSLSDFDSQQHILNDLTCFSQARN**********PKTLTPSNLDELFSAEISSSPRFSDQAVFSPTHKSSVLNQFQQPHSMLSPIKTNVFSPKNVEHPLLQASFRVGS**********PISPMGPRLAAF**************SRDPISNNPIPNIGSPRN*************KLDWSIKGDELELLRRSSSCDLRNNNHEEPDLSWIHSIVKESPPEMMKEKTANPVVTTASSGEALNSNSQADSFDHSVIGAWLEQMQLDQLVV
Disordered Region (DISPRO)
********************AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIG**********************************************EYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPG**ARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLY***************************************************************PNVPTLNL***NIQSSRLRSSLSARDILPDDFSSLSDFDSQQHILNDLTCF*******************TPSNLDELFSAEISSSPRFSDQAVFSPTHKSSVLNQFQQPHSMLSPIKTNVFSPKNVEHPL*****************************************************************************LDW*IKGDELELLRRSSSC******HEEPDLSWIHSIVK*********************************FDHSVIGAWLEQMQLDQLV*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCCGPDKSESNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSPRSSVSGASVMDMAAALLLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQSSRLRSSLSARDILPDDFSSLSDFDSQQHILNDLTCFSQARNNSVSLSRSCRPKTLTPSNLDELFSAEISSSPRFSDQAVFSPTHKSSVLNQFQQPHSMLSPIKTNVFSPKNVEHPLLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQREKQQQQLHSLSSRDPISNNPIPNIGSPRNVNSSWSKWGSPSGKLDWSIKGDELELLRRSSSCDLRNNNHEEPDLSWIHSIVKESPPEMMKEKTANPVVTTASSGEALNSNSQADSFDHSVIGAWLEQMQLDQLVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	724	2.2.26 [Sep-21-2011]
P93755	716	Zinc finger CCCH domain-c	yes	no	0.926	0.937	0.570	0.0
Q10EL1	764	Zinc finger CCCH domain-c	yes	no	0.933	0.884	0.579	0.0
Q9LXV4	706	Zinc finger CCCH domain-c	no	no	0.907	0.930	0.537	0.0
Q84SL2	657	Zinc finger CCCH domain-c	no	no	0.838	0.923	0.423	1e-131
Q2QPW2	619	Zinc finger CCCH domain-c	no	no	0.593	0.694	0.520	1e-125
Q9LUZ4	607	Zinc finger CCCH domain-c	no	no	0.766	0.914	0.413	1e-123
Q9XEE6	597	Zinc finger CCCH domain-c	no	no	0.779	0.944	0.378	1e-118
Q93ZS9	580	Zinc finger CCCH domain-c	no	no	0.732	0.913	0.366	1e-105
Q688R3	601	Zinc finger CCCH domain-c	no	no	0.508	0.612	0.396	1e-73
Q9FU27	386	Zinc finger CCCH domain-c	no	no	0.146	0.274	0.764	2e-50

>sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/766 (57%), Positives = 518/766 (67%), Gaps = 95/766 (12%)

Query: 1   MCCGPDKSE-----------SNTEDMN-------NNSTAETEDSFTSMLELASNNDVEGF 42
           MCCG D+             S  ED N       N+ T ETED+F S+LELA+NNDVEG 
Sbjct: 1   MCCGSDRLNQIVSSRSSLPISFEEDNNLVTNTDMNHLTVETEDTFASLLELAANNDVEGV 60

Query: 43  KRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV 102
           +  +ERDPS VDE GLWYGR  GSK MV+++RTPLMVAATYGS+DV+KLI+  + ADVN 
Sbjct: 61  RLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNR 120

Query: 103 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRA 162
           +CG+D+TTALHCAASGG+ N + VV+LLL+AGAD + +DA G    DVIV+PPKL+ ++ 
Sbjct: 121 ACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPKLEGVKL 180

Query: 163 ILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMAL 222
           +L+E+  +  SS      AE NL V     N   SSP    S +G               
Sbjct: 181 MLQELLSADGSST-----AERNLRVVTNVPNRS-SSP--CHSPTGENGGSGSGSPLGSPF 232

Query: 223 KFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVH 282
           K     F     K+EYP+DPSLPDIKNSIYATDEFRM+SFK+RPCSRAYSHDWTECPFVH
Sbjct: 233 KLKSTEF-----KKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVH 287

Query: 283 PGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTS 342
           PGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGT 
Sbjct: 288 PGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTG 347

Query: 343 CDRRVCFFAHTAEELRPLYVSNGSVVPSPRSSVSGASVMDMAAAL-LLPGSPSSMSGMSP 401
           C RRVCFFAHT EELRPLY S GS VPSPRS+       D AAAL LLPGSPS +S MS 
Sbjct: 348 CARRVCFFAHTPEELRPLYASTGSAVPSPRSNA------DYAAALSLLPGSPSGVSVMS- 400

Query: 402 NPFSQPMSPS--GNGNLQSSMMWPQPNVPTLNLPGSNIQSSRLRSSLSARDILPDDFSSL 459
                P+SPS  GNG   S+M WPQPNVP L+LPGSN+QSSRLRSSL+ARDI  D+F+ L
Sbjct: 401 -----PLSPSAAGNGMSHSNMAWPQPNVPALHLPGSNLQSSRLRSSLNARDIPTDEFNML 455

Query: 460 SDFDSQQHILNDLTCFSQARNNSVSLSRSCRPKTLTPSNLDELFSAEISSSPRFSD---- 515
           +D++ QQ +LN+          S +LSRS R K++ PSNL++LFSAE SSSPRF+D    
Sbjct: 456 ADYE-QQQLLNEY---------SNALSRSGRMKSMPPSNLEDLFSAEGSSSPRFTDSALA 505

Query: 516 QAVFSPTHKSSVLN----QFQQPHSMLSPIKTNVFSPKNVEHPLLQASFRVGSPGRMSPR 571
            AVFSPTHKS+V N    Q QQ  SMLSPI T+  SPK+V+H L          GRMSPR
Sbjct: 506 SAVFSPTHKSAVFNQFQQQQQQQQSMLSPINTSFSSPKSVDHSLFSGG------GRMSPR 559

Query: 572 S-VEPISPMGPRLAAFAQREK----------QQQQLHSLSSRDPISNNPIPNIGSPRNVN 620
           + VEPISPM  R++  AQ  K          QQ Q  SLSSR+ +  N  P +GSP N N
Sbjct: 560 NVVEPISPMSARVSMLAQCVKQQQQQQQQQQQQHQFRSLSSRE-LRTNSSPIVGSPVNNN 618

Query: 621 SSWSKWGSPSGKLDWSIKGDELELLRRSSSCDLRNNNHEEPDLSWIHSIVKESPPEMMKE 680
           +  SKWGS +G+ DW +  + L  LR SSS D      +EPD+SW+ S+VKE+P E  KE
Sbjct: 619 TWSSKWGSSNGQPDWGMSSEALGKLRSSSSFD-----GDEPDVSWVQSLVKETPAE-AKE 672

Query: 681 KTANPVVTTASSGEAL--NSNSQADSFDHSVIGAWLEQMQLDQLVV 724
           K A     T+SSGE +    N      DH+ + AW+EQMQLDQLV 
Sbjct: 673 KAA-----TSSSGEHVMKQPNPVEPVMDHAGLEAWIEQMQLDQLVA 713

Arabidopsis thaliana (taxid: 3702)

>sp|Q10EL1|C3H24_ORYSJ Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/728 (57%), Positives = 524/728 (71%), Gaps = 52/728 (7%)

Query: 20  TAETEDSFTSMLELASNNDVEGFKRMLERDP-SSVDEVGLWYGRVNGSKQMVSEHRTPLM 78
           T +T+D+F  +LELA+++D EG +R LER P ++ DE GLWYGR     + V EHRTPLM
Sbjct: 60  TVDTDDAFAGLLELAADDDAEGLRRALERAPPAAADEAGLWYGR-----RKVLEHRTPLM 114

Query: 79  VAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPD 138
           VAATYGS+ VL+L+L   S DVN  CGSD TTALHCAASGGS + V+ V+LLL+AGAD D
Sbjct: 115 VAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADAD 174

Query: 139 CVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSS 198
             DA+G+ P DVI +PPK+   +  L+++ G           A H +   +  + +   S
Sbjct: 175 ATDASGYRPADVISVPPKMFDAKIALQDLLGCPK--------AGHGVLRVVTRAANSMLS 226

Query: 199 PLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFR 258
           P+ + +A  +  SPS  V   M  KF D+     +EK+EYP+DPSLPDIKNSIYA+DEFR
Sbjct: 227 PVSSPTAEDAR-SPSAAVM--MTTKFADLPRVVTSEKKEYPVDPSLPDIKNSIYASDEFR 283

Query: 259 MFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEY 318
           M+SFKIRPCSRAYSHDWTECPFVHPGENARRRDPRK+HYSCVPCPDFRKG CRRGDMCEY
Sbjct: 284 MYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGVCRRGDMCEY 343

Query: 319 AHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSPRSSVSGA 378
           AHGVFECWLHPAQYRTRLCKDGTSC+RRVCFFAHT +ELRPLYVS GS VPSPR+S +  
Sbjct: 344 AHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTTDELRPLYVSTGSAVPSPRASATAT 403

Query: 379 SVMDMAAALLLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQ 438
             M  A   L+PGSPSS+S +  +PF+ PMSPSGNG +  S+ W QPNVPTL+LPGS++Q
Sbjct: 404 MEMAAAMG-LMPGSPSSVSAVM-SPFTPPMSPSGNG-MPPSLGWQQPNVPTLHLPGSSLQ 460

Query: 439 SSRLRSSLSARDILPDDFSSLSDFDSQQHILNDLTCFSQARNNSVSLSRSCRPKTLTPSN 498
           SSRLR+SLSARD+  DD+S + D DSQ  ++NDL C+S  R  S + + + R K+L PSN
Sbjct: 461 SSRLRTSLSARDMPADDYSLMQDIDSQ--LINDL-CYS--RIGSSTGNHTSRTKSLNPSN 515

Query: 499 LDELFSAEISSSPRFS--DQ-AVFSPTHKSSVLN-QFQQPHSMLSPIKTNVFSPKNVEHP 554
           LD+LFSAE+ SSPR+S  DQ  +FSP+HK++ LN   QQ  ++LSPI T VFSPK+V++ 
Sbjct: 516 LDDLFSAEMVSSPRYSNADQGGMFSPSHKAAFLNQFQQQQQALLSPINT-VFSPKSVDNQ 574

Query: 555 -------LLQASFRVGSPGRMSPRSVEPISPMGPRL-AAFAQREKQQQQLHSLSSRD--P 604
                  LLQAS  + SPGRMSPR VE  SPM   L AA AQREKQQQ + SLSSRD  P
Sbjct: 575 QLPSHSSLLQASLGISSPGRMSPRCVESGSPMNSHLAAALAQREKQQQTMRSLSSRDLGP 634

Query: 605 ISNNPIPNIGSPRNVNSSWSKWGSPSGKLDWSIKGDELELLRRSSSCDLRNNNHEEPDLS 664
            +      +GSP  ++SSWSKWGSPSG  DW + G+EL  LRRSSS +LR+   ++PDLS
Sbjct: 635 SAARASGVVGSP--LSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG-DDPDLS 691

Query: 665 WIHSIVKESPPE--MMKEKTANPVV------TTASSGEALNSNSQADSFDH-SVIGAWLE 715
           W+H++VKESPPE  +   ++ N V        + S+GE  + N+  D  D  +VIGA LE
Sbjct: 692 WVHTLVKESPPEKQVTTAESINSVGPSPLMPPSVSNGEGPSLNAPLDGHDQAAVIGALLE 751

Query: 716 QMQLDQLV 723
           QMQLDQ +
Sbjct: 752 QMQLDQHI 759

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LXV4|C3H56_ARATH Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/724 (53%), Positives = 489/724 (67%), Gaps = 67/724 (9%)

Query: 18  NSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPL 77
           N  AE E SF+++LE A++NDVEGF+R L  D S ++++GLWY R    ++MV E RTPL
Sbjct: 30  NDAAEWEHSFSALLEFAADNDVEGFRRQLS-DVSCINQMGLWYRRQRFVRRMVLEQRTPL 88

Query: 78  MVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADP 137
           MVA+ YGS+DV+K IL    A++N+SCG D++TALHCAASG S N +DVV+LLLS GADP
Sbjct: 89  MVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADP 148

Query: 138 DCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYS 197
           +  DA+G+ P+DV+V+ P    +R ILEE+        +++     + +    S  S  S
Sbjct: 149 NIPDAHGNRPVDVLVVSPHAPGLRTILEEILKKDE---IISEDLHASSSSLGSSFRSLSS 205

Query: 198 SPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEF 257
           SP      +GS       VSSP      DV+F +  EK+EYPIDPSLPDIK+ IY+TDEF
Sbjct: 206 SP-----DNGSSLLSLDSVSSPTKPHGTDVTFAS--EKKEYPIDPSLPDIKSGIYSTDEF 258

Query: 258 RMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCE 317
           RMFSFKIRPCSRAYSHDWTECPF HPGENARRRDPRKFHY+CVPCPDF+KG+C++GDMCE
Sbjct: 259 RMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPDFKKGSCKQGDMCE 318

Query: 318 YAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSPR-SSVS 376
           YAHGVFECWLHPAQYRTRLCKDG  C+RRVCFFAH  EELRPLY S GS +PSPR SS  
Sbjct: 319 YAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAHANEELRPLYPSTGSGLPSPRASSAV 378

Query: 377 GASVMDMAAAL-LLPGSPSSMSGMSPNPFSQPMSPSGNGNL-QSSMMWPQPNVPTLNLPG 434
            AS MDMA+ L +LPGSPS+    + + F+ P+SPSGNG++  SSM WPQ N+P LNLPG
Sbjct: 379 SASTMDMASVLNMLPGSPSA----AQHSFTPPISPSGNGSMPHSSMGWPQQNIPALNLPG 434

Query: 435 SNIQSSRLRSSLSARDILPDDFSSLSDFDSQQHILNDLTCFSQARNNSVSLSRSCRPKTL 494
           SNIQ SRLRSSL+ARDI  +  S L +F+ Q+ +  D+       ++   ++ S RPKTL
Sbjct: 435 SNIQLSRLRSSLNARDIPSEQLSMLHEFEMQRQLAGDM-------HSPRFMNHSARPKTL 487

Query: 495 TPSNLDELFSAEISSSPRFSDQ----AVFSPTHKSSVLNQFQ-QPHSMLSPIKTNVF-SP 548
            PSNL+ELFSAE+ +SPRFSDQ    +V SP+HKS++LNQ Q    SMLSPIKTN+  SP
Sbjct: 488 NPSNLEELFSAEV-ASPRFSDQLAVSSVLSPSHKSALLNQLQNNKQSMLSPIKTNLMSSP 546

Query: 549 KNVE-HPLLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQREKQQQQLHSLSSRDPISN 607
           KNVE H LLQ +         SPR  EPISPM  R+       KQQ    SLSSRD  S+
Sbjct: 547 KNVEQHSLLQQA--------SSPRGGEPISPMNARM-------KQQLHSRSLSSRDFGSS 591

Query: 608 NP---IP-NIGSPRNVNSSWSKWGSPSG-KLDWSIKGDELELLRRSSSCDLRNNNHEEPD 662
            P   +P + GSP    S WS W    G K+DWS++ DEL  LR+S S  L NN + E D
Sbjct: 592 LPRDLMPTDSGSPL---SPWSSWDQTHGSKVDWSVQSDELGRLRKSHS--LANNPNREAD 646

Query: 663 LSWIHSIVKESPP-----EMMKEKTANPVVTTASSGEALNSNSQADSFDHSVIGAWLEQM 717
           +SW   ++K+S        ++    A P+    SS    NS    D+ +  ++ AWLEQ+
Sbjct: 647 VSWAQQMLKDSSSPRNGNRVVNMNGARPLTQGGSSVNPHNS----DTRESDILDAWLEQL 702

Query: 718 QLDQ 721
            LD+
Sbjct: 703 HLDR 706

Arabidopsis thaliana (taxid: 3702)

>sp|Q84SL2|C3H50_ORYSJ Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1

 Score =  470 bits (1209), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 297/701 (42%), Positives = 401/701 (57%), Gaps = 94/701 (13%)

Query: 37  NDVEGFKRML----ERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI 92
           +DV+G +  L    E      D VGLWYGR         E RTPLMVAATYGS  V+ L+
Sbjct: 34  DDVDGLRGALAEGGEEAAELADGVGLWYGR-----SKAYEARTPLMVAATYGSAGVVSLL 88

Query: 93  L-LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVI 151
           + L    DVN   G+D  TALHCAASGGS N V VV+LLL+AGADP   D+ G  P DVI
Sbjct: 89  VGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVI 148

Query: 152 VLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPS 211
           + PP        LE + G + +  V  S A  + +  + SS  +                
Sbjct: 149 LAPPASPDALGDLEVLLGRRRALAVATSVASGSSSPPLSSSPDE---------------- 192

Query: 212 PSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAY 271
                 S  +   + ++   G  K+EYP+DP+LPDIK+S+YA+DEFRMF+FK+RPCSRAY
Sbjct: 193 -GNRSPSSRSSSLSPITVDRG--KKEYPVDPTLPDIKSSVYASDEFRMFAFKVRPCSRAY 249

Query: 272 SHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRK-GACRRGDMCEYAHGVFECWLHPA 330
           SHDWTECPFVHPGENARRRDPRK  Y+ VPCP+FR+ G C  GD CE++HGVFE WLHP+
Sbjct: 250 SHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGCPSGDSCEFSHGVFESWLHPS 309

Query: 331 QYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSPRSSVSGASVMDMAAAL--- 387
           QYRTRLCK+G +C RR+CFFAH  +ELR +  ++G+ + SPR+S    S +DM AA    
Sbjct: 310 QYRTRLCKEGAACARRICFFAHDEDELRHVPHNSGAGLLSPRAS----SSIDMTAAAALG 365

Query: 388 LLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQSSRLRSSLS 447
           LLPGSP+     +P P S                 P             +Q SRLRSS +
Sbjct: 366 LLPGSPTRH--FAPPPVS-----------------PSAGSNGGAAAAHWLQGSRLRSSFN 406

Query: 448 ARDILPDDFSSLSDFDSQQHILNDLTCFSQAR-NNSVSLSRSCRPKTLTPSNLDELFSAE 506
           ARD   DD   L +++SQ   L  L     +R    +S   S RP T+ PSNL+++++++
Sbjct: 407 ARDAAVDDLGMLLEWESQ--YLGALCLPPSSRPQPRLSAGLSIRP-TIAPSNLEDMYASD 463

Query: 507 ISSSPRF-SDQA--VFSPTHKSSVLNQFQQPHSMLSPIKTN-VFSPKNVE-HPLLQASFR 561
           ++ SPRF +DQ   V+SP HKS++LN+  Q   +LSP+ TN ++SP+ ++   L  + F 
Sbjct: 464 MAMSPRFPNDQGHSVYSPAHKSALLNKLHQQKGLLSPVNTNRMYSPRALDPSSLAHSPFG 523

Query: 562 VGSPGRMSPRSVEPISPMGPRLAAFAQREKQQQQLHSLSSRDPISNNPIPNIGSPRNVNS 621
             SP   SPR++EP SP+  R+ A A +                     P++GSPRN +S
Sbjct: 524 GMSP--RSPRTMEPTSPLSARVGAPATQR--------------------PSVGSPRN-SS 560

Query: 622 SWSKWGSPSGKLDWSIKGDELELLRRSSSCDLRNNNHEEPDLSWIHSIVKESPPEM-MKE 680
           +W   GSP GK+DW +  +EL  LRR +         +E D+SW+ S+V  +  E+  K 
Sbjct: 561 AWGTVGSPMGKVDWGVDSEELVRLRRPAQPGF---GEDETDVSWVQSLVSNA--ELNGKR 615

Query: 681 KTANPVVTTASSGEALNSNSQADSFDHSVIGAWLEQMQLDQ 721
                +  T++     + N+Q D  D +VIGAWLEQM LDQ
Sbjct: 616 GEVQGMPGTSALMNRPDLNNQGDLLDQTVIGAWLEQMHLDQ 656

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QPW2|C3H67_ORYSJ Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1

 Score =  450 bits (1158), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 275/528 (52%), Positives = 330/528 (62%), Gaps = 98/528 (18%)

Query: 235 KREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRK 294
           ++E+P DPSLPDIKN  YA+D+FRM+SFK+R CSRAYSHDWTECPFVHPGENARRRDPRK
Sbjct: 152 RKEWPPDPSLPDIKNGAYASDDFRMYSFKVRACSRAYSHDWTECPFVHPGENARRRDPRK 211

Query: 295 FHYSCVPCPDFRKGA-CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHT 353
           +HYSCVPCP+F+KGA CRRGDMCEYAHGVFE WLHPAQYRTRLCKDG  C RRVCFFAHT
Sbjct: 212 YHYSCVPCPEFKKGAGCRRGDMCEYAHGVFESWLHPAQYRTRLCKDGVGCARRVCFFAHT 271

Query: 354 AEELRPLYVSNGSVVPSPRSSVSGASVMDMAAALLLPGSPSSMSGMSPNPFSQPMSPSG- 412
            +ELRPLYVS GS VPSPR ++  A+        L   SP S S      F+ P+SPS  
Sbjct: 272 PDELRPLYVSTGSAVPSPRGALEMAAAAAAMGMGL--SSPGSSS------FTPPLSPSAG 323

Query: 413 -----NGNLQSSMMWP-QPNVPTLNLPGS--NIQSSRLRSSLSARDILPDDF----SSLS 460
                 G       WP QP+VP L LPGS  N+  SRLR+SLSARD+  D+     ++ +
Sbjct: 324 GGGGGGGGSGGGGAWPQQPSVPALCLPGSAGNLHLSRLRTSLSARDMAVDELLAAAAAAA 383

Query: 461 DFDSQQHILNDLTCFSQARNNSVSLSRSCRPKTLTPSNLDELFSAEI-----SSSPRFSD 515
           D+D                  S +  RS R K L PSNLDELFSAE+     S SPR++D
Sbjct: 384 DYDGLV--------------ASPASIRSARGKALVPSNLDELFSAELAAAAASRSPRYAD 429

Query: 516 Q--AVFSPTHKSSVLNQF--QQPHSMLSPIKTNVFSPKNVEHPLLQASFRVGSPGRMSPR 571
           Q  A FSPT K++VLNQF  QQ HS+LSP                          R +  
Sbjct: 430 QGGAAFSPTRKATVLNQFQLQQQHSLLSP--------------------------RAAAV 463

Query: 572 SVEPISPMGPR-LAAFAQREKQQQQ-LHSLSSRDPISNNPIPNIGSPRNVNSSWSKWGSP 629
           + EP+SPM  R LAA AQREK QQQ L S+SSRD + N     +GSP  V+SS SKWG P
Sbjct: 464 TPEPVSPMSSRLLAALAQREKMQQQTLRSMSSRD-LGNAASLLVGSP--VSSSMSKWGFP 520

Query: 630 SGKLDWSIKGDELELLRRSSSCDLR----NNNHEEPDLSWIHSIVKESPPEMMKEKTANP 685
           SG  DW    +EL  L+R SS +LR    N NH EPDLSW++++VKE  PE M       
Sbjct: 521 SGNPDWGADDEELGRLKRCSSFELRSGAANGNH-EPDLSWVNTLVKEPTPEKM------- 572

Query: 686 VVTTASSGEALNSNSQADSFDH---------SVIGAWLEQMQLDQLVV 724
            +TT S+ +++    Q  S DH          VI +WLEQ+QLD++VV
Sbjct: 573 -MTTTSAMDSIGILGQNTSRDHIVGGEDDTAGVISSWLEQLQLDEMVV 619

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LUZ4|C3H66_ARATH Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 275/665 (41%), Positives = 365/665 (54%), Gaps = 110/665 (16%)

Query: 27  FTSMLELASNNDVEGFKRMLERDP-SSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGS 85
           F+ +LE ++ ND+ GFK ++E +   S+D  GLWYGR  GSK+M  E RTPLM+AA +GS
Sbjct: 11  FSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGS 70

Query: 86  VDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGH 145
            +V+  I+     DVN SCGSD  TALHCA SG SAN +++V LLL   A+PD  DA G+
Sbjct: 71  KEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGN 130

Query: 146 HPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASA 205
            P DV + P         L  VF ++   +        +L    G   S+    +    +
Sbjct: 131 KPGDV-IFP--------CLSPVFSARMKVLERLLKGNDDLNEVNGQEESEPEVEVEVEVS 181

Query: 206 SGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR 265
                                     G+E++EYP+DP+LPDIKN +Y TDEFRM++FKI+
Sbjct: 182 PPR-----------------------GSERKEYPVDPTLPDIKNGVYGTDEFRMYAFKIK 218

Query: 266 PCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFEC 325
           PCSRAYSHDWTECPFVHPGENARRRDPRK+HYSCVPCP+FRKG+C RGD CEYAHG+FEC
Sbjct: 219 PCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSRGDTCEYAHGIFEC 278

Query: 326 WLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSPR---SSVSGASVMD 382
           WLHPAQYRTRLCKD T+C RRVCFFAH  EELRPLY S GS VPSPR   SS + ++  D
Sbjct: 279 WLHPAQYRTRLCKDETNCSRRVCFFAHKPEELRPLYPSTGSGVPSPRSSFSSCNSSTAFD 338

Query: 383 MAAALLLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQSSRL 442
           M     LP   ++   +SPN  S P+     G  ++ M WP    P L LPG     SRL
Sbjct: 339 MGPISPLPIGATTTPPLSPNGVSSPI-----GGGKTWMNWPNITPPALQLPG-----SRL 388

Query: 443 RSSLSARDILPDDFSSLSDFDSQQHILNDLTCFSQARNNSVSLSRSCR---PKTLTPSN- 498
           +S+L+AR+I         DF  +   L   T ++    +S    +         ++P N 
Sbjct: 389 KSALNAREI---------DFSEEMQSLTSPTTWNNTPMSSPFSGKGMNRLAGGAMSPVNS 439

Query: 499 LDELFSAEISSSPRFSDQAVFSPTHKSSVLNQFQQPHSMLSPIKTNVFSPKNVEHPLLQA 558
           L ++F  E ++S     ++V +P   S+ L+         SP+  N              
Sbjct: 440 LSDMFGTEDNTSGLQIRRSVINPQLHSNSLSS--------SPVGAN-------------- 477

Query: 559 SFRVGSPGRMSPRSVEPISPMGPRLAAFAQREKQQQQLHSLSSRDPISNNPIPNIGSPRN 618
                     S  S++  + +  R A FA++  Q     S   R+   N+  P I S   
Sbjct: 478 ----------SLFSMDSSAVLASRAAEFAKQRSQ-----SFIERNNGLNHH-PAISS--M 519

Query: 619 VNSSWSKWGSPSGKLDWSIKGDELELLRRSSSCDLR-----------NNNHEEPDLSWIH 667
             +  + WGS  GKLDWS++GDEL+ LR+S+S  LR               EEPD+SW+ 
Sbjct: 520 TTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPNEGTGLEEPDVSWVE 579

Query: 668 SIVKE 672
            +VKE
Sbjct: 580 PLVKE 584

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XEE6|C3H29_ARATH Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 277/731 (37%), Positives = 372/731 (50%), Gaps = 167/731 (22%)

Query: 7   KSESNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPS-SVDEVGLWYGRVNG 65
           K+ +  E M   S  E   S T +LE A+ +D+  FKR +E +PS  +DE G WY R  G
Sbjct: 12  KTLTEVEFMRQKS--EDGASATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVG 69

Query: 66  SKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVD 125
           SK+M  E RTPLMVAA YGS++VL  I+    +DVN  C  ++ TALHCA SG S ++V+
Sbjct: 70  SKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVE 129

Query: 126 VVRLLLSAGADPDCVDANGHHPIDVIVLPPKL--DSMRAILEEVFGSKNSSVVVASGAEH 183
           ++++LL A A P+CVDANG+ P+D++    +   +  R  +E +    + SV+     E 
Sbjct: 130 IIKILLDASASPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVLLTGIHGSVMEEEEEEL 189

Query: 184 NLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPS 243
              V+                                                +YP D S
Sbjct: 190 KSVVT------------------------------------------------KYPADAS 201

Query: 244 LPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCP 303
           LPDI   +Y TD+FRMFSFK++PCSRAYSHDWTECPFVHPGENARRRDPRK+ Y+CVPCP
Sbjct: 202 LPDINEGVYGTDDFRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP 261

Query: 304 DFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVS 363
           +FRKG+C +GD CEYAHGVFE WLHPAQYRTRLCKD T C RRVCFFAH  +ELRP+  S
Sbjct: 262 EFRKGSCPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARRVCFFAHRRDELRPVNAS 321

Query: 364 NGSVVPSPRSSVSGASVMDMAAALLLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWP 423
            GS + SPRSS + +  M + + L L  SP +    SP     P+SP   G      +W 
Sbjct: 322 TGSAMVSPRSS-NQSPEMSVMSPLTLGSSPMN----SPMANGVPLSPRNGG------LW- 369

Query: 424 QPNVPTLNLPGSNIQSSRLRSSLSARDILPDDFSSLSDFDSQQHILNDLTCFSQARNNSV 483
           Q  V +L  P   +  SRL+S+LSARD+  +        D+++  L DL           
Sbjct: 370 QNRVNSLTPPPLQLNGSRLKSTLSARDMDMEMELRFRGLDNRR--LGDLK---------- 417

Query: 484 SLSRSCRPKTLTPSNLDELFSAEISSSPRFSDQAVFSPTHKSSVLNQFQQP--HSMLSPI 541
                       PSNL+E F                  ++ S+ + Q Q P  HS +   
Sbjct: 418 ------------PSNLEETFG-----------------SYDSASVMQLQSPSRHSQM--- 445

Query: 542 KTNVFSPKNVEHPLLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQREKQQQQLHSLSS 601
             N +    V  P          P      +    + M  R +AFA+R            
Sbjct: 446 --NHYPSSPVRQP---------PPHGFESSAAMAAAVMNARSSAFAKRS----------- 483

Query: 602 RDPISNNPIPNIGSPRNVNSSWSKWGSPSGKLDWSIKGDELELLRRSSSCDLRNNNH--- 658
              +S  P P       V S+ S WGSP+GKL+W ++ DEL  LRRS+S  +  NN+   
Sbjct: 484 ---LSFKPAP-------VASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSV 533

Query: 659 --------EEPDLSWIHSIVKESPPEMMKEKTANPVVTTASSGEALNSNSQADSFDHSVI 710
                   +EPD+SW++S+VKE+ PE + E+  N V   AS              D   +
Sbjct: 534 SRPARDYSDEPDVSWVNSLVKENAPERVNERVGNTVNGAASR-------------DKFKL 580

Query: 711 GAWLEQMQLDQ 721
            +W EQM +D 
Sbjct: 581 PSWAEQMYIDH 591

Involved in salt stress response. May positively modulate plant tolerance to salt stress.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZS9|C3H47_ARATH Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 253/691 (36%), Positives = 348/691 (50%), Gaps = 161/691 (23%)

Query: 1   MCCGPDKSESNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWY 60
           MC GP  +  ++  +    + + E+    +LE A+ +D++ FKR +E     +DE GLWY
Sbjct: 1   MCSGPKSNLCSSRTLTEIESRQKEEETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWY 60

Query: 61  GRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGS 120
            R  GSK+M  E RTPLMVAA YGS+ VL  I+    +DVN +CG +R T LHCA +G S
Sbjct: 61  CRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCS 120

Query: 121 ANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDS--MRAILEEVFGSKNSSVVVA 178
            N+++V+ +LL A A  + VDANG+ P+DV V   +  +   R  +E +        ++ 
Sbjct: 121 VNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGGVGGLID 180

Query: 179 SGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREY 238
              E  + + +    +D S P                          D++ G        
Sbjct: 181 EAVEEEIKI-VSKYPADASLP--------------------------DINEG-------- 205

Query: 239 PIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYS 298
                       +Y +DEFRM+SFK++PCSRAYSHDWTEC FVHPGENARRRDPRK+ Y+
Sbjct: 206 ------------VYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYPYT 253

Query: 299 CVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELR 358
           CVPCP+FRKG+C +GD CEYAHGVFE WLHPAQY+TRLCKD T C R+VCFFAH  EE+R
Sbjct: 254 CVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYKTRLCKDETGCARKVCFFAHKREEMR 313

Query: 359 PLYVSNGSVVP-SPRSSVSGASVMDMAAALLLPG-SPSSM-SGMSPNPFS-----QPMSP 410
           P+  S GS V  SP SS+            ++PG SP +  SG+S  P S      P SP
Sbjct: 314 PVNASTGSAVAQSPFSSLE-----------MMPGLSPLAYSSGVSTPPVSPMANGVPSSP 362

Query: 411 SGNGNLQSSMMWPQPNVPTLNLPGSNIQSSRLRSSLSARDILPDDFSSLSDFDSQQHILN 470
              G+ Q+ +    P  P L L G     SRL+S+LSARDI           D +  +  
Sbjct: 363 RNGGSWQNRVNTLTP--PALQLNG----GSRLKSTLSARDI-----------DMEMEMEL 405

Query: 471 DLTCFSQARNNSVSLSRSCRPKTLTPSNLDELFSAEISSSPRFSDQAVFSPTHKSSVLNQ 530
            L  F                     +N++E F + +SS  R            +S + Q
Sbjct: 406 RLRGFG--------------------NNVEETFGSYVSSPSR------------NSQMGQ 433

Query: 531 FQQPHSMLSPIKTNVFSPKNVEHPLLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQRE 590
               H   SP++           P  Q  F           +   ++ M  R  AFA+R 
Sbjct: 434 NMNQHYPSSPVR----------QPPSQHGFES--------SAAAAVAVMKARSTAFAKR- 474

Query: 591 KQQQQLHSLSSRDPISNNPIPNIGSPRNVNSSWSKWGSPSGKLDWSIKGDELELLRRSSS 650
                  SLS +      P  N+          S WGSP+GKL+W +KG+EL  +RRS S
Sbjct: 475 -------SLSFKPATQAAPQSNL----------SDWGSPNGKLEWGMKGEELNKMRRSVS 517

Query: 651 CDLRNNNH--------EEPDLSWIHSIVKES 673
             +  NN+        +EPD+SW++S+VK+S
Sbjct: 518 FGIHGNNNNNAARDYRDEPDVSWVNSLVKDS 548

Involved in salt stress response. May positively modulate plant tolerance to salt stress.

Arabidopsis thaliana (taxid: 3702)

>sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1

 Score =  278 bits (711), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 183/462 (39%), Positives = 242/462 (52%), Gaps = 94/462 (20%)

Query: 235 KREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRK 294
           K+EYP D +LPD+K+ +++TDEFRM+SFK++PCSRAYSHDWTECPFVHPGENARRRDPR+
Sbjct: 191 KKEYPPDLTLPDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRR 250

Query: 295 FHYSCVPCPDFRKGA-CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHT 353
           + YSCVPCP+FRKG  CR+GD CEYAHGVFECWLHPAQYRTRLCKD   C RR+CFFAH 
Sbjct: 251 YSYSCVPCPEFRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHK 310

Query: 354 AEELRPLYVSNGSV-----VPSPRSSVSGASVMDMAAALLLPGSPSSMSGMSPNPFSQPM 408
            +ELR +  S  SV     V SPRSS      +DMAAA     SP+              
Sbjct: 311 PDELRAVNPSAVSVGMQPTVSSPRSSPPNG--LDMAAAAAAMMSPA-------------- 354

Query: 409 SPSGNGNLQSSMMWPQPNVPTLNLPGSNIQSSRLRSSLSARDILPDDFSSLSDFDSQQHI 468
                        WP            +  +SRL+++L AR+ L  D   L+    QQ +
Sbjct: 355 -------------WP------------SSPASRLKTALGARE-LDFDLEMLALDQYQQKL 388

Query: 469 LNDLTCFSQARNNSVSLSR---SCRPKTLTPSNLDELFS---AEISSSPRFS-DQAVFSP 521
            + ++     R +  + +    +  P    P   D L S   A +S     S  QA   P
Sbjct: 389 FDKVSGAPSPRASWGAAANGLATASPARAVPDYTDLLGSVDPAMLSQLHALSLKQAGDMP 448

Query: 522 THKSSVLNQFQQPHSMLSPIKTNVFSPKNVEHPLLQASFRVGSPGRMSPRSVEPISPMGP 581
            + S  +    Q H   SP+     +   ++H + +A                    M  
Sbjct: 449 AYSS--MADTTQMHMPTSPMVGGANTAFGLDHSMAKAI-------------------MSS 487

Query: 582 RLAAFAQREKQQQQLHSLSSRDPISNNPI--PNIGSPRNVNSSWSKWGSPSGKLDWSIKG 639
           R +AFA+R    Q       R P + + +     G+P    S  S WGSP GKLDW ++G
Sbjct: 488 RASAFAKRS---QSFIDRGGRAPAARSLMSPATTGAP----SILSDWGSPDGKLDWGVQG 540

Query: 640 DELELLRRSSSCDLRNNN---------HEEPDLSWIHSIVKE 672
           DEL  LR+S+S   R  +           EPD+SW++S+VK+
Sbjct: 541 DELHKLRKSASFAFRGQSAMPVATHAAAAEPDVSWVNSLVKD 582

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FU27|C3H2_ORYSJ Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0192000 PE=2 SV=1

 Score =  201 bits (511), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 81/106 (76%), Positives = 91/106 (85%)

Query: 255 DEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGD 314
           DEFRM+ FK+R C+R  SHDWTECPF HPGE ARRRDPRK+HYS   CPDFRKG C+RGD
Sbjct: 75  DEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGGCKRGD 134

Query: 315 MCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPL 360
            CEYAHGVFECWLHPA+YRT+ CKDGT+C RRVCFFAHT ++LR L
Sbjct: 135 ACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVL 180

Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	724
294440421	740	unknown [Vitis vinifera]	0.984	0.963	0.721	0.0
359487288	740	PREDICTED: zinc finger CCCH domain-conta	0.987	0.966	0.722	0.0
224055208	710	predicted protein [Populus trichocarpa]	0.947	0.966	0.708	0.0
224106079	728	predicted protein [Populus trichocarpa]	0.955	0.950	0.688	0.0
356548929	701	PREDICTED: zinc finger CCCH domain-conta	0.954	0.985	0.701	0.0
255571544	728	nucleic acid binding protein, putative [	0.965	0.960	0.668	0.0
356530657	701	PREDICTED: zinc finger CCCH domain-conta	0.955	0.987	0.687	0.0
356544173	704	PREDICTED: zinc finger CCCH domain-conta	0.954	0.981	0.701	0.0
302398727	731	C3HL domain class transcription factor [	0.948	0.939	0.662	0.0
302398721	736	C3HL domain class transcription factor [	0.948	0.933	0.652	0.0

>gi|294440421|gb|ADE74631.1| unknown [Vitis vinifera]

 Score =  993 bits (2567), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/751 (72%), Positives = 608/751 (80%), Gaps = 38/751 (5%)

Query: 1   MCCGPDKSES-------------NTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLE 47
           MC GP++S++             NT DMN+  T ETEDSF+S+ ELA+NNDV+GFKR LE
Sbjct: 1   MCSGPEQSKTKSSSSPSSTESKTNTIDMNH-LTVETEDSFSSLHELAANNDVDGFKRSLE 59

Query: 48  RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSD 107
           RD S+++EVGLWYGR  GSKQMV EHRTP+MVAATYGSV+VLKLIL  S ADVN+SCG D
Sbjct: 60  RDASAINEVGLWYGRQKGSKQMVLEHRTPMMVAATYGSVEVLKLILSRSDADVNISCGPD 119

Query: 108 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEV 167
           ++TALHCAASGGS N VDVV+LLLSAGADP+ +DANGH P+DVIV+PPKL SMR  LEE+
Sbjct: 120 KSTALHCAASGGSVNAVDVVKLLLSAGADPNSMDANGHFPVDVIVVPPKLPSMRVALEEL 179

Query: 168 F--GSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMAL-KF 224
              G+ + SV      E NL +SI SSNS+ +SP L++S     P  S  VSSPMAL KF
Sbjct: 180 LVNGASDGSV-----GERNLRISITSSNSNSNSPPLSSSPENGSPFASDSVSSPMALSKF 234

Query: 225 NDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPG 284
           +D      +EK+EYPIDPSLPDIKNSIYATDEFRMFSFK+RPCSRAYSHDWTECPFVHPG
Sbjct: 235 SDQPVTLASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPG 294

Query: 285 ENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCD 344
           ENARRRDPRKFHYSCVPCPDFRKGACRRGD+CEYAHGVFECWLHPAQYRTRLCKDGT+C 
Sbjct: 295 ENARRRDPRKFHYSCVPCPDFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTNCA 354

Query: 345 RRVCFFAHTAEELRPLYVSNGSVVPSPRSSVSGASVMDMAAAL-LLPGSPSSMSGMSPNP 403
           RRVCFFAHT+EELRPLY+S GS VPSPR+S   A+ MDMAAAL LLPGSPSS+S MSP+P
Sbjct: 355 RRVCFFAHTSEELRPLYLSTGSAVPSPRAS-GPANAMDMAAALSLLPGSPSSVSVMSPSP 413

Query: 404 FSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQSSRLRSSLSARDILPDDFSSLSDFD 463
           F+QPMSPS NG   SS  WPQPNVPTLNLPGSN QSSRLRSSL+ARDI P+DF+ L DFD
Sbjct: 414 FAQPMSPSANGISHSSGAWPQPNVPTLNLPGSNFQSSRLRSSLNARDIPPEDFNMLLDFD 473

Query: 464 SQQHILNDLTCFSQARNNSVSLSRSCRPKTLTPSNLDELFSAEI-SSSPRFSDQAVFSPT 522
           +QQ +LNDL+CFSQ R N+ SLSRS R KTLTPSNL+ELFSAEI SS       AVFSP+
Sbjct: 474 AQQQLLNDLSCFSQPRTNAASLSRSARSKTLTPSNLEELFSAEISSSPRYSDSSAVFSPS 533

Query: 523 HKSSVLN-QFQQPHSMLSPIKTNVFSPKNVEHPLLQASFRVGSPGRMSPRSVEPISPMGP 581
           HKS++LN   QQ  SMLSPI TNVFSPKNVEHPLLQASF + SPGRMSPRS+EPISPMGP
Sbjct: 534 HKSAILNQFQQQQQSMLSPINTNVFSPKNVEHPLLQASFGISSPGRMSPRSMEPISPMGP 593

Query: 582 RLAAFAQREKQQQQLHSLSSRDPISNNPIPNIGSPRNVNSSWSKWGSPSGKLDWSIKGDE 641
           RL+A AQREKQ QQL SLSSRD  SNNP   +GSP N   SWSKWGSP+GKLDWS+ GDE
Sbjct: 594 RLSAIAQREKQHQQLRSLSSRDLGSNNPASVVGSPVN---SWSKWGSPTGKLDWSVNGDE 650

Query: 642 LELLRRSSSCDLRNNNHEEPDLSWIHSIVKESPPEMMKEKTANPVVTTASSGEAL----- 696
           +  L+RSSS +L  NN EEPDLSW+ S+VKESPPEMMKEK A PV  +ASSGE L     
Sbjct: 651 MGRLKRSSSFEL-GNNGEEPDLSWVQSLVKESPPEMMKEKLAAPVSASASSGEGLNSNSQ 709

Query: 697 ---NSNSQADSFDHSVIGAWLEQMQLDQLVV 724
              NSNSQ DS DHSVIGAWLEQMQLDQLVV
Sbjct: 710 IESNSNSQIDSVDHSVIGAWLEQMQLDQLVV 740

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487288|ref|XP_002279202.2| PREDICTED: zinc finger CCCH domain-containing protein 30 [Vitis vinifera]

 Score =  993 bits (2566), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/749 (72%), Positives = 607/749 (81%), Gaps = 34/749 (4%)

Query: 1   MCCGPDKSES-------------NTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLE 47
           MC GP++S++             NT DMN+  T ETEDSF+S+ ELA+NNDV+GFKR LE
Sbjct: 1   MCSGPEQSKTKSSSSPSSTESKTNTIDMNH-LTVETEDSFSSLHELAANNDVDGFKRSLE 59

Query: 48  RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSD 107
           RD S+++EVGLWYGR  GSKQMV +HRTP+MVAATYGSV+VLKLIL  S ADVN+SCG D
Sbjct: 60  RDASAINEVGLWYGRQKGSKQMVLKHRTPMMVAATYGSVEVLKLILSRSDADVNISCGPD 119

Query: 108 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEV 167
           ++TALHCAASGGS N VDVV+LLLSAGADP+ +DANGH P+DVIV+PPKL SMR  LEE+
Sbjct: 120 KSTALHCAASGGSVNAVDVVKLLLSAGADPNSMDANGHFPVDVIVVPPKLPSMRVALEEL 179

Query: 168 FGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMAL-KFND 226
             +  S     S  E NL +SI SSNS+ +SP L++S     P  S  VSSPMAL KF+D
Sbjct: 180 LVNSASD---GSVGERNLRISITSSNSNSNSPPLSSSPENGSPFASDSVSSPMALSKFSD 236

Query: 227 VSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGEN 286
                 +EK+EYPIDPSLPDIKNSIYATDEFRMFSFK+RPCSRAYSHDWTECPFVHPGEN
Sbjct: 237 QPVTLASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGEN 296

Query: 287 ARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRR 346
           ARRRDPRKFHYSCVPCPDFRKGACRRGD+CEYAHGVFECWLHPAQYRTRLCKDGT+C RR
Sbjct: 297 ARRRDPRKFHYSCVPCPDFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTNCARR 356

Query: 347 VCFFAHTAEELRPLYVSNGSVVPSPRSSVSGASVMDMAAAL-LLPGSPSSMSGMSPNPFS 405
           VCFFAHT+EELRPLY+S GS VPSPR+S   A+ MDMAAAL LLPGSPSS+S MSP+PF+
Sbjct: 357 VCFFAHTSEELRPLYLSTGSAVPSPRAS-GPANAMDMAAALSLLPGSPSSVSVMSPSPFA 415

Query: 406 QPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQSSRLRSSLSARDILPDDFSSLSDFDSQ 465
           QPMSPS NG   SS  WPQPNVPTLNLPGSN QSSRLRSSL+ARDI P+DF+ L DFD+Q
Sbjct: 416 QPMSPSANGISHSSGAWPQPNVPTLNLPGSNFQSSRLRSSLNARDIPPEDFNMLLDFDAQ 475

Query: 466 QHILNDLTCFSQARNNSVSLSRSCRPKTLTPSNLDELFSAEI-SSSPRFSDQAVFSPTHK 524
           Q +LNDL+CFSQ R N+ SLSRS R KTLTPSNL+ELFSAEI SS       AVFSP+HK
Sbjct: 476 QQLLNDLSCFSQPRTNAASLSRSARSKTLTPSNLEELFSAEISSSPRYSDSSAVFSPSHK 535

Query: 525 SSVLN-QFQQPHSMLSPIKTNVFSPKNVEHPLLQASFRVGSPGRMSPRSVEPISPMGPRL 583
           S++LN   QQ  SMLSPI TNVFSPKNVEHPLLQASF + SPGRMSPRS+EPISPMGPRL
Sbjct: 536 SAILNQFQQQQQSMLSPINTNVFSPKNVEHPLLQASFGISSPGRMSPRSMEPISPMGPRL 595

Query: 584 AAFAQREKQQQQLHSLSSRDPISNNPIPNIGSPRNVNSSWSKWGSPSGKLDWSIKGDELE 643
           +A AQREKQ QQL SLSSRD  SNNP   +GSP N   SWSKWGSP+GKLDWS+ GDE+ 
Sbjct: 596 SAIAQREKQHQQLRSLSSRDLGSNNPASVVGSPVN---SWSKWGSPTGKLDWSVNGDEMG 652

Query: 644 LLRRSSSCDLRNNNHEEPDLSWIHSIVKESPPEMMKEKTANPVVTTASSGEAL------- 696
            L+RSSS +L  NN EEPDLSW+HS+VKESPPEMMKEK A PV  +ASSGE L       
Sbjct: 653 RLKRSSSFEL-GNNGEEPDLSWVHSLVKESPPEMMKEKFAAPVSASASSGEGLNSNSQIE 711

Query: 697 -NSNSQADSFDHSVIGAWLEQMQLDQLVV 724
            NSNSQ DS DHSVIGAWLEQMQLDQLVV
Sbjct: 712 SNSNSQIDSVDHSVIGAWLEQMQLDQLVV 740

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055208|ref|XP_002298434.1| predicted protein [Populus trichocarpa] gi|118482842|gb|ABK93336.1| unknown [Populus trichocarpa] gi|222845692|gb|EEE83239.1| predicted protein [Populus trichocarpa]

 Score =  982 bits (2539), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/716 (70%), Positives = 581/716 (81%), Gaps = 30/716 (4%)

Query: 20  TAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMV 79
           + ETED+F+S+LELA+NND EGFKR ++RD SS++E G WY R  GSKQ+V + RTPLMV
Sbjct: 5   SVETEDAFSSLLELAANNDAEGFKRFIKRDASSINEAGFWYIRQKGSKQIVLDQRTPLMV 64

Query: 80  AATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC 139
           AATYGS+DVLKLIL H+  DVN+SCG ++TTALHCA+SGGS NVVDVV+LLLSAGADP+C
Sbjct: 65  AATYGSLDVLKLILDHTKVDVNLSCGKEKTTALHCASSGGSINVVDVVKLLLSAGADPNC 124

Query: 140 VDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSN------ 193
           +D NG  P DVIV+PPKL SM+  LEE+    +S     S AEH+   S+G SN      
Sbjct: 125 LDVNGDRPGDVIVVPPKLQSMKVALEELLSKTDSD---GSVAEHDFNGSVGVSNLRVSIS 181

Query: 194 -SDYSSPLLTAS-ASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSI 251
            S++SSP L++S  +GSPPSPS L+ SP A KFN++   +  EK+EYPIDPSLPDIKNSI
Sbjct: 182 NSNFSSPTLSSSPENGSPPSPSVLIYSPRASKFNNLPGSSTPEKKEYPIDPSLPDIKNSI 241

Query: 252 YATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACR 311
           YATDEFRMFSFK+RPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACR
Sbjct: 242 YATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACR 301

Query: 312 RGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSP 371
           RGDMCEYAHGVFECWLHPAQYRTRLCKDGTSC+R+VCFFAHT EELRPLYVS GS +PSP
Sbjct: 302 RGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRQVCFFAHTPEELRPLYVSTGSAIPSP 361

Query: 372 RSSVSGASVMDMAAAL-LLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTL 430
           RSS S ASVMDMAAAL LLPGSPSS+S MSP PF+QPMSP+ NG   SSM WPQPNVPTL
Sbjct: 362 RSSQSAASVMDMAAALSLLPGSPSSVSAMSPTPFNQPMSPA-NGISHSSMAWPQPNVPTL 420

Query: 431 NLPGSNIQSSRLRSSLSARDILPDDFSSLSDFDSQQHILNDLTCFSQARNNSVSLSRSCR 490
           +LPGSN QSSRLRSS SARDI P+DF+ L DFDSQQ ILNDLTCFSQ++NNS S SRS  
Sbjct: 421 HLPGSNFQSSRLRSSFSARDIPPEDFNLLPDFDSQQQILNDLTCFSQSQNNSASFSRSGW 480

Query: 491 PKTLTPSNLDELFSAEISSSPRFSDQ--AVFSPTHKSSVLNQFQQPHSMLSPIKTNVFSP 548
            KTL PSNL+ELF+AE+ SSPRF+DQ  AVFSPTHKS+ LNQ QQ  SMLSPI T+ FSP
Sbjct: 481 SKTLNPSNLEELFTAEM-SSPRFADQAAAVFSPTHKSAYLNQLQQQQSMLSPINTSAFSP 539

Query: 549 KNVEHPLLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQREKQQQQLHSLSSRDPISNN 608
           KNVEH LL ++F  GSPGRMSPRS+EPISP G RL+  AQREKQQQQL SLSSRD  SNN
Sbjct: 540 KNVEHHLLHSAFGAGSPGRMSPRSMEPISPRGSRLSTLAQREKQQQQLRSLSSRDLGSNN 599

Query: 609 PIPNIGSPRNVNSSWSKWGSPSGKLDWSIKGDELELLRRSSSCDLRNNNHEEPDLSWIHS 668
           P+ +     NVN SWSKWGSP+GKLDWS+ GDEL  L RSSS +L  NN EEPDLSW+ S
Sbjct: 600 PVAH-----NVN-SWSKWGSPNGKLDWSVNGDELGRLCRSSSFEL-GNNGEEPDLSWVQS 652

Query: 669 IVKESPPEMMKEKTANPVVTTASSGE---ALNSNSQADSFDHSVIGAWLEQMQLDQ 721
           +VKESPPE++KEK A PV   A S +    L+SNSQ +     V+ +WLEQMQ+D+
Sbjct: 653 LVKESPPEVLKEKLAIPVPGAAPSPDVAMGLSSNSQIN----PVLESWLEQMQIDK 704

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106079|ref|XP_002314035.1| predicted protein [Populus trichocarpa] gi|222850443|gb|EEE87990.1| predicted protein [Populus trichocarpa]

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/739 (68%), Positives = 583/739 (78%), Gaps = 47/739 (6%)

Query: 1   MCCGPDKSESN--------------TEDMNNNSTAETEDSFTSMLELASNNDVEGFKRML 46
           MC GP+K+  +              T++MN   T ETEDSF+S+LELA+NNDVEGFKR +
Sbjct: 1   MCSGPEKAAESPSTSTPSTVENSPITKEMNC-LTVETEDSFSSLLELAANNDVEGFKRFI 59

Query: 47  ERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGS 106
           E+D SS+ EVG WYGR  GSKQ+V + RTPLMVAATYGSVDVLK IL H+ ADVN+SCG 
Sbjct: 60  EQDASSIKEVGFWYGRQKGSKQIVLDQRTPLMVAATYGSVDVLKFILDHTKADVNLSCGK 119

Query: 107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE 166
           D+TTALHCA SGGS  VVD V+LLLSAGADP+C+D NG  P DVIV+PP L SM+  LEE
Sbjct: 120 DKTTALHCATSGGSIKVVDAVKLLLSAGADPNCLDVNGDRPGDVIVVPPNLQSMKVTLEE 179

Query: 167 VFGSKNSSVVVASGAEHNLTVSIGSSN--------SDYSSPLLTASASGSPPSPSRLVSS 218
           +    +S V VA   E +   S+G  N        +  S  L ++S +GSP SPS L+ S
Sbjct: 180 LLSKSDSDVSVA---ERDFNGSVGVCNLRVSISKSNSSSPTLSSSSENGSPHSPSVLIYS 236

Query: 219 PMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTEC 278
           P A KFN++   + +E++EYPIDPSLPDIKNSIYATDEFRMFSFK+RPCSRAYSHDWTEC
Sbjct: 237 PRASKFNNLPANSTSERKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTEC 296

Query: 279 PFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCK 338
           PFVHPGENARRRDPRKFHYSCVPCPDFRKGACR GDMCEYAHGVFECWLHPAQYRTRLCK
Sbjct: 297 PFVHPGENARRRDPRKFHYSCVPCPDFRKGACRLGDMCEYAHGVFECWLHPAQYRTRLCK 356

Query: 339 DGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSPRSSVSGASVMDMAAAL-LLPGSPSSMS 397
           DGTSC+R+VCFFAHT EELRPLYVS GS +PSPRSS S ASVMDMAAAL LLPGSPSS+S
Sbjct: 357 DGTSCNRQVCFFAHTYEELRPLYVSTGSAIPSPRSSQSAASVMDMAAALSLLPGSPSSVS 416

Query: 398 GMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQSSRLRSSLSARDILPDDFS 457
            MSP PF+QPMSP+ NG   SSM W QPNVPTL+LPGSN+QSSRLRSSLSARDI P+ F+
Sbjct: 417 AMSPTPFNQPMSPA-NGISHSSMAWSQPNVPTLHLPGSNLQSSRLRSSLSARDIPPEGFN 475

Query: 458 SLSDFDSQQHILNDLTCFSQARNNSVSLSRSCRPKTLTPSNLDELFSAEISSSPRFSDQA 517
            L DFDSQQ ILNDLTCFS++RNNS S S S R KTLTPSNL+ELF+AE+ SSPR++DQA
Sbjct: 476 LLPDFDSQQQILNDLTCFSESRNNS-SFSVSGRSKTLTPSNLEELFAAEM-SSPRYADQA 533

Query: 518 VFSPTHKSSVLNQFQQPHSMLSPIKTNVFSPKNVEHPLLQASFRVGSPGRMSPRSVEPIS 577
            +        LNQ QQ  SMLSPI T+VFSPKNVEHPLLQA F VGSPGRMS R +EPIS
Sbjct: 534 AY--------LNQVQQQQSMLSPISTSVFSPKNVEHPLLQAVFGVGSPGRMSSRVMEPIS 585

Query: 578 PMGPRLAAFAQREKQQQQLHSLSSRDPISNNPIPNI-GSPRNVNSSWSKWGSPSGKLDWS 636
           PMG RL+A AQREK+QQQL SLSSRD  SN+P+ ++ GSP N   SWSKWGSP+GK+DWS
Sbjct: 586 PMGSRLSALAQREKKQQQLRSLSSRDLGSNHPMASVAGSPGN---SWSKWGSPNGKVDWS 642

Query: 637 IKGDELELLRRSSSCDLRNNNHEEPDLSWIHSIVKESPPEMMKEKTANPVVTTASSGEAL 696
           + GDEL  LRRSSS +L  NN EEPDLSW+ S+VKESPPEM+KEK ANPV +TAS G  L
Sbjct: 643 VHGDELGRLRRSSSFEL-GNNGEEPDLSWVQSLVKESPPEMLKEKFANPVSSTASPGTGL 701

Query: 697 NSNSQADSFDHSVIGAWLE 715
           NSNS+ D    SV+ +WLE
Sbjct: 702 NSNSRID----SVLESWLE 716

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548929|ref|XP_003542851.1| PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform 1 [Glycine max] gi|356548931|ref|XP_003542852.1| PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform 2 [Glycine max]

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/711 (70%), Positives = 568/711 (79%), Gaps = 20/711 (2%)

Query: 20  TAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMV 79
           T  TEDSF+S+LELASNND+EGFK +LE+D S+++EVGLWYGR NGSKQ V EHRTPLMV
Sbjct: 5   TVNTEDSFSSLLELASNNDIEGFKVLLEKDSSTINEVGLWYGRQNGSKQFVLEHRTPLMV 64

Query: 80  AATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC 139
           AATYGS+DV+K++LL   ADVN +CG+++TTALHCAASGGS   VD V+LLLSAGAD +C
Sbjct: 65  AATYGSIDVMKMVLLCPEADVNFACGANKTTALHCAASGGSTKAVDAVKLLLSAGADVNC 124

Query: 140 VDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSP 199
           VDANG+ PIDVI +PPKL   +A+LEE+     S V V   +      S    +  +SS 
Sbjct: 125 VDANGNRPIDVIAVPPKLQGAKAVLEELLSDNASDVSVGEFSVPVSVNSSSPGSPAHSSN 184

Query: 200 LLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRM 259
            +  + S SPPSP       +A KF D +  + +EK+EYPIDPSLPDIKNSIYATDEFRM
Sbjct: 185 GMPYTPSVSPPSP-------VAAKFTDAAICSLSEKKEYPIDPSLPDIKNSIYATDEFRM 237

Query: 260 FSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYA 319
           FSFK+RPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYA
Sbjct: 238 FSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYA 297

Query: 320 HGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSPRSSVSGAS 379
           HGVFECWLHPAQYRTRLCKDGTSC+RRVCFFAHTAEELRPLYVS GS  PSPRSS SG +
Sbjct: 298 HGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAAPSPRSSASGPN 357

Query: 380 VMDMAAAL-LLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQ 438
           VMDMAAA+ L PGSPSS S MSP+ F QPMSPS NG +  S  W QPNVP L+LPGSN+Q
Sbjct: 358 VMDMAAAMSLFPGSPSSGSSMSPSHFGQPMSPSANG-MPLSSAWAQPNVPALHLPGSNLQ 416

Query: 439 SSRLRSSLSARDILPDDFSSLSDFDS-QQHILNDLTCFSQARNNSVSLSRSCRPKTLTPS 497
           SSRLRSSLSARDI P+D + +SD D  QQH LNDL+C+ Q R  + S+SRS R KTLTPS
Sbjct: 417 SSRLRSSLSARDIPPEDLNMMSDLDGQQQHHLNDLSCYIQPRPGASSVSRSGRSKTLTPS 476

Query: 498 NLDELFSAEISSSPRFSDQA---VFSPTHKSSVLNQFQQPHSMLSPIKTNVFSPKNVEHP 554
           NL+ELFSAEIS SPR+SD A   VFSPTHKS+VLNQFQQ  SMLSPI TN+ SPKNVEHP
Sbjct: 477 NLEELFSAEISLSPRYSDPAAGSVFSPTHKSAVLNQFQQLQSMLSPINTNLLSPKNVEHP 536

Query: 555 LLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQREKQQQQLHSLSSRDPISNNPIPNIG 614
           L QASF V   GRMSPRSVEPISPM  RL+AFAQREKQQQQL S+SSRD  +N+P   +G
Sbjct: 537 LFQASFGVSPSGRMSPRSVEPISPMSARLSAFAQREKQQQQLRSVSSRDLGANSPASLVG 596

Query: 615 SPRNVNSSWSKWGSPSGKLDWSIKGDEL-ELLRRSSSCDLRNNNHEEPDLSWIHSIVKES 673
           SP N    WSKWGSP GK DWS+ GD L   +RRSSS + R NN EEPDLSW+ S+VKES
Sbjct: 597 SPAN---PWSKWGSPIGKADWSVNGDSLGRQMRRSSSFE-RKNNGEEPDLSWVQSLVKES 652

Query: 674 PPEMMKEKTANPVVTTASSGEALNSNSQADSFDHSVIGAWLEQMQLDQLVV 724
           PPEM+KEK A+P+ T ++ G   NSNSQ +S DHSV+GAWLEQMQLDQLVV
Sbjct: 653 PPEMIKEKFASPMPTASADGP--NSNSQIESIDHSVLGAWLEQMQLDQLVV 701

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571544|ref|XP_002526718.1| nucleic acid binding protein, putative [Ricinus communis] gi|223533907|gb|EEF35632.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  939 bits (2428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/750 (66%), Positives = 580/750 (77%), Gaps = 51/750 (6%)

Query: 1   MCCGPDK----------------SESNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKR 44
           MCCG ++                S S   DMN+  T ETED+F S+LELA+NND+EGFKR
Sbjct: 1   MCCGLERLKPTPFPTLLLISSEDSRSTNIDMNH-LTVETEDTFASLLELAANNDIEGFKR 59

Query: 45  MLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC 104
            +ERDPS VDE+GLWYGR  GSKQMV+EHRTPLMVAATYGS+DV+KLIL  S ADVN SC
Sbjct: 60  TIERDPSCVDEIGLWYGRRKGSKQMVNEHRTPLMVAATYGSIDVIKLILSSSDADVNRSC 119

Query: 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAIL 164
           G D++TALHC ASGG+ N VDVV+LLL+AGADP+ +DANGH PIDVIV+PPKLD ++  L
Sbjct: 120 GLDKSTALHCVASGGAVNAVDVVKLLLAAGADPNSIDANGHRPIDVIVVPPKLDGVKFAL 179

Query: 165 EEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKF 224
           EE+  +  S +      E +L VS  +SNS  S PL  +  +GSP S S    SP+  K 
Sbjct: 180 EELLVNDGSVI------ERDLRVSTATSNS-TSPPLSPSVGNGSPLSSS---DSPVKSKL 229

Query: 225 NDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPG 284
           +D +  T +EK+EYP+DPSLPDIKNSIY+TDEFRM+SFK+RPCSRAYSHDWTECPFVHPG
Sbjct: 230 HDATISTASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPG 289

Query: 285 ENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCD 344
           ENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSC 
Sbjct: 290 ENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCA 349

Query: 345 RRVCFFAHTAEELRPLYVSNGSVVPSPRSSVSGASVMDMAAAL-LLPGSPSSMSGMSPNP 403
           RRVCFFAHT EELRPLYVS GS VPSPRSS SGA+ MD AAA+ LLPGSPSS+S MSP P
Sbjct: 350 RRVCFFAHTVEELRPLYVSTGSAVPSPRSSTSGATAMDFAAAMSLLPGSPSSVSVMSPTP 409

Query: 404 FSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQSSRLRSSLSARDILPDDFSSLSDFD 463
           F+ PMSPS N    SS+ WPQPNVP L+LPGSN+QSSRLRSSL+ARDI  DD+S L DFD
Sbjct: 410 FTPPMSPSANSMSHSSVAWPQPNVPALHLPGSNLQSSRLRSSLNARDIQADDYSMLPDFD 469

Query: 464 -SQQHILNDLTCFSQARNNSVSLSRSCRPKTLTPSNLDELFSAEISSSPRFSDQ----AV 518
             QQ +LN+L+  +Q   ++ SL+RS R K LTPSNLD+LFSAE SSSPR++DQ    AV
Sbjct: 470 VQQQQLLNELSSLTQPALSNNSLNRSGRLK-LTPSNLDDLFSAE-SSSPRYADQALASAV 527

Query: 519 FSPTHKSSVLNQFQQPHSMLSPIKTNVFSPKNVEHPLLQASFRVGSPGRMSPRSVEPISP 578
           FSPTHKS+VLNQFQQ  SMLSPI TN FSPKNV+HPLLQASF   + GRMSPR+VEPISP
Sbjct: 528 FSPTHKSAVLNQFQQQQSMLSPINTN-FSPKNVDHPLLQASF---ASGRMSPRNVEPISP 583

Query: 579 MGPRLAAFAQREKQQQQLHSLSSRDPISNNPIPNIGSPRNVNSSWSKWGSPSGKLDWSIK 638
           M  R+   AQREKQQQQL SLSSR+ + +N    +GSP N   SWSKWGS +GK DW++ 
Sbjct: 584 MSSRMTMLAQREKQQQQLRSLSSRE-LGSNSAAIVGSPVN---SWSKWGSSNGKPDWTVS 639

Query: 639 GDELELLRRSSSCDLRNNNHEEPDLSWIHSIVKESPPEMMKEKTANPVVTT----ASSGE 694
            DE   LRRS+S +L   N EEPDLSW+ S+VKESP E MKEK   PV T+    ASS E
Sbjct: 640 SDEFGKLRRSNSFEL--GNGEEPDLSWVQSLVKESPTE-MKEKLTMPVSTSVAMGASSCE 696

Query: 695 ALNSNSQADSFDHSVIGAWLEQMQLDQLVV 724
           + N NSQ DS DH V+GAW+EQ+Q+DQLV 
Sbjct: 697 SSNVNSQIDSVDH-VVGAWIEQLQIDQLVA 725

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530657|ref|XP_003533897.1| PREDICTED: zinc finger CCCH domain-containing protein 30-like [Glycine max]

 Score =  930 bits (2404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/714 (68%), Positives = 566/714 (79%), Gaps = 22/714 (3%)

Query: 18  NSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPL 77
           N T  TEDSF+ +LELASNND E  K  L+RD S ++EVGLWY R  GSKQ+V + RTPL
Sbjct: 3   NLTVHTEDSFSCLLELASNNDFEDLKLALDRDASLINEVGLWYVRQIGSKQIVLQPRTPL 62

Query: 78  MVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADP 137
           MVAA YGS+DVLKL+L    ADVN SCG+D++TALHCAA GGS N VDVV+LLLSAGAD 
Sbjct: 63  MVAAMYGSIDVLKLLLSCPEADVNFSCGTDKSTALHCAALGGSVNAVDVVKLLLSAGADV 122

Query: 138 DCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYS 197
            CVDANG+ P+DV+V+PPKL+ ++A LE++     S   V S  +  + VS+ SS SD S
Sbjct: 123 SCVDANGNRPVDVLVVPPKLEGLKATLEDLLSDSTS---VGSVGDCFIPVSVNSSCSD-S 178

Query: 198 SPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEF 257
           +  L++  +G P        S MA KF D +  + +EK+EYPIDPSLPDIKNSIYATDEF
Sbjct: 179 AAHLSSPENGLP-------FSAMASKFADTAVNSASEKKEYPIDPSLPDIKNSIYATDEF 231

Query: 258 RMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCE 317
           RMFSFK+RPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCE
Sbjct: 232 RMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCE 291

Query: 318 YAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSPRSSVSG 377
           YAHGVFECWLHPAQYRTRLCKDGTSC+RRVCFFAHTAEELRPLYVS GS VPSPRSS S 
Sbjct: 292 YAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSAST 351

Query: 378 ASVMDMAAAL-LLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSN 436
            +VMDMAAA+ L PGSPSS+S MSP+PF+QPMSPS +G   SS  WPQPNVP L+LPGSN
Sbjct: 352 PNVMDMAAAMSLFPGSPSSISSMSPSPFAQPMSPSTSGISHSSNAWPQPNVPALHLPGSN 411

Query: 437 IQSSRLRSSLSARDILPDDFSSLSDFDSQQHILNDLTCFSQARNNSVSLSRSCRPKTLTP 496
           IQ+SRLRSSLSARD+ P+DF  L DFD QQH+L+DL CFSQ R  ++S+SRS R KTLTP
Sbjct: 412 IQTSRLRSSLSARDMPPEDFDVLQDFDGQQHLLSDLGCFSQPRPGAISVSRSGRSKTLTP 471

Query: 497 SNLDELFSAEISSSPRFSDQA---VFSPTHKSSVLNQFQQPHSMLSPIKTNVFSPKNVEH 553
           SNLDELFSAEISSSPR+SD A   VFSP HKS+++NQFQQ  S LSPI T+V SP+NVEH
Sbjct: 472 SNLDELFSAEISSSPRYSDPAVASVFSPRHKSTIMNQFQQLQSSLSPINTSVSSPRNVEH 531

Query: 554 PLLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQREKQQQQLHSLSSRDPISNNPIPNI 613
           PLLQASF V SPGRMSPRS+EPISPM  RL+AFAQREKQ QQL SLSSRD  +N P   +
Sbjct: 532 PLLQASFGVSSPGRMSPRSMEPISPMSSRLSAFAQREKQHQQLRSLSSRDLGANVPASMV 591

Query: 614 GSPRNVNSSWSKWGSP--SGKLDWSIKGDELELLRRSSSCDLRNNNHEEPDLSWIHSIVK 671
           GSP N   SWS WGSP  +GK+DWS+ G+EL  L+RSSS +L  NN EEPDLSW+ S+VK
Sbjct: 592 GSPVN---SWSNWGSPHGNGKVDWSVNGNELGRLQRSSSFEL-GNNGEEPDLSWVQSLVK 647

Query: 672 ESPPEMMKEKTAN-PVVTTASSGEALNSNSQADSFDHSVIGAWLEQMQLDQLVV 724
           ESP E+ ++ T + PV +         SN Q +S DHSV+GAWLEQMQLDQLVV
Sbjct: 648 ESPSEIKEKLTGSGPVASVDGPSSNPKSNPQVESVDHSVLGAWLEQMQLDQLVV 701

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544173|ref|XP_003540529.1| PREDICTED: zinc finger CCCH domain-containing protein 30-like [Glycine max]

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/714 (70%), Positives = 575/714 (80%), Gaps = 23/714 (3%)

Query: 20  TAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMV 79
           T  TEDSF+S+LELASNND+EGFK +LE+D SS++EVGLWYGR NGSKQ V EHRTPLMV
Sbjct: 5   TVNTEDSFSSLLELASNNDIEGFKVLLEKDSSSINEVGLWYGRQNGSKQFVLEHRTPLMV 64

Query: 80  AATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC 139
           AATYGS+DV+K+ILL   ADVN +CG+++TTALHCAASGGSAN VD V++LLSAGAD + 
Sbjct: 65  AATYGSIDVMKIILLCPEADVNFACGANKTTALHCAASGGSANAVDAVKILLSAGADVNG 124

Query: 140 VDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSP 199
           VDANG+ PIDVI +PPKL   +A+LEE+     S      G+    +V +  + S   SP
Sbjct: 125 VDANGNRPIDVIAVPPKLQGAKAVLEELLSDSASE-----GSIGEFSVPVSVNTSSLGSP 179

Query: 200 LLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRM 259
               S++G P +PS    SP+  KF D +  + +EK+EYPIDPSLPDIKNSIYATDEFRM
Sbjct: 180 --GHSSNGMPYTPSSSPPSPVVAKFTDAAVCSLSEKKEYPIDPSLPDIKNSIYATDEFRM 237

Query: 260 FSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYA 319
           FSFK+RPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYA
Sbjct: 238 FSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYA 297

Query: 320 HGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSPRSSVSGAS 379
           HGVFECWLHPAQYRTRLCKDGTSC+RRVCFFAHTAEELRPLYVS GS VPSPRSS S  +
Sbjct: 298 HGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAPN 357

Query: 380 VMDMAAAL-LLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQ 438
           VMDMAAA+ LLPGSPSS+S MSP+ F QPMSPS NG +  S  W QPNV  L+LPGSN+Q
Sbjct: 358 VMDMAAAMSLLPGSPSSVSSMSPSHFGQPMSPSANG-MSLSSAWAQPNVSALHLPGSNLQ 416

Query: 439 SSRLRSSLSARDILPDDFSSLSDFDS-QQHILNDLTCFSQARNNSVSLSRSCRPKTLTPS 497
           SSRLRSSLSARD+ PDD + +SD D  QQH LNDL+C+ Q R  + S+SRS R K LTPS
Sbjct: 417 SSRLRSSLSARDMPPDDLNMMSDLDGQQQHPLNDLSCYLQPRPGAGSVSRSGRSKILTPS 476

Query: 498 NLDELFSAEISSSPRFSDQA---VFSPTHKSSVLNQFQQPHSMLSPIKTNVFSPKNVEHP 554
           NL++LFSAEISSSPR+SD A   VFSPTHKS+VLNQFQQ  SMLSPI TN+ SPKNVEHP
Sbjct: 477 NLEDLFSAEISSSPRYSDPAAGSVFSPTHKSAVLNQFQQLQSMLSPINTNLLSPKNVEHP 536

Query: 555 LLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQREK---QQQQLHSLSSRDPISNNPIP 611
           LLQASF V   GRMSPRSVEPISPM  R++AFAQREK   QQQQL SLSSRD  +N+P  
Sbjct: 537 LLQASFGVSPSGRMSPRSVEPISPMSSRISAFAQREKQQQQQQQLRSLSSRDLGANSPAS 596

Query: 612 NIGSPRNVNSSWSKWGSPSGKLDWSIKGDEL-ELLRRSSSCDLRNNNHEEPDLSWIHSIV 670
            +GSP N    WSKWGSP+GK DWS+ GD L   +RRSSS +L+NN  EEPDLSW+ S+V
Sbjct: 597 LVGSPAN---PWSKWGSPNGKADWSVNGDTLGRQMRRSSSFELKNNG-EEPDLSWVQSLV 652

Query: 671 KESPPEMMKEKTANPVVTTASSGEALNSNSQADSFDHSVIGAWLEQMQLDQLVV 724
           KESPPEM+KEK A+P+ T ++ G   NSNSQ +S DHSV+GAWLEQMQLDQLVV
Sbjct: 653 KESPPEMIKEKFASPMPTASADGP--NSNSQIESIDHSVLGAWLEQMQLDQLVV 704

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398727|gb|ADL36658.1| C3HL domain class transcription factor [Malus x domestica] gi|302398729|gb|ADL36659.1| C3HL domain class transcription factor [Malus x domestica]

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/711 (66%), Positives = 553/711 (77%), Gaps = 24/711 (3%)

Query: 17  NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTP 76
           N+ T ETED+F S+LELA+NND++ FKR +E DPS +DE+GLWY R  GSKQMV+E RTP
Sbjct: 32  NHLTVETEDAFASLLELAANNDIQSFKRSIEHDPSGIDEIGLWYCRQKGSKQMVNEQRTP 91

Query: 77  LMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD 136
           LMVAATYGS+DV+KLIL  S ADVN +CG DR+TALHCAASGG+ N VD V+LLL AGAD
Sbjct: 92  LMVAATYGSIDVMKLILSLSDADVNQACGRDRSTALHCAASGGAENAVDCVKLLLGAGAD 151

Query: 137 PDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDY 196
           P+ VDANGHHP DVIV+PP+L +++  LEE+       +V  S  E  LTVS  + +S  
Sbjct: 152 PNSVDANGHHPNDVIVVPPRLQNVKLALEELL------MVNGSVGEQTLTVSTRTVHSSS 205

Query: 197 SSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDE 256
              L  +  +GSP S      SP   KF + S  + +EK+EYP+DPSLPDIKNSIY+TDE
Sbjct: 206 PP-LSASPENGSP-SAFDFNCSPTKSKFYN-SLSSASEKKEYPVDPSLPDIKNSIYSTDE 262

Query: 257 FRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMC 316
           FRM+SFK+RPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMC
Sbjct: 263 FRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMC 322

Query: 317 EYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSPRSSVS 376
           EYAHGVFECWLHPAQYRTRLCKDG SC RRVCFFAHT +ELRPLYVS GS VPSPRSS S
Sbjct: 323 EYAHGVFECWLHPAQYRTRLCKDGISCARRVCFFAHTTDELRPLYVSTGSAVPSPRSSTS 382

Query: 377 GASVMDMAAAL-LLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGS 435
           GA  MD AAA+ LLPGSPSS++ MSP+PF+ PMSPS NG   SS+ WPQPNVP L+LPGS
Sbjct: 383 GALAMDFAAAMSLLPGSPSSVNVMSPSPFTPPMSPSANGMSHSSLAWPQPNVPALHLPGS 442

Query: 436 NIQSSRLRSSLSARDILPDDFSSLSDFD-SQQHILNDLTCFSQARNNSVSLSRSCRPKTL 494
           N QSSRLRSSL ARD+  DDF  L +FD  QQ +LN+L+C SQ   ++ SL+RS R  TL
Sbjct: 443 NFQSSRLRSSLCARDMPSDDFDLLPEFDMQQQQLLNELSCLSQPSLSNNSLNRSGRRTTL 502

Query: 495 TPSNLDELFSAEISSSPRFSDQA----VFSPTHKSSVLNQFQQPHSMLSPIKTNVFSPKN 550
           TPSNLD+LFSAE S SPR+SDQ+    VFSPTHKS+VLNQFQQ  SMLSPI TN FSPK 
Sbjct: 503 TPSNLDDLFSAE-SLSPRYSDQSLQSGVFSPTHKSAVLNQFQQQQSMLSPIHTN-FSPKA 560

Query: 551 VEHPLLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQREKQQQQLHSLSSRDPISNNPI 610
           V+H LLQAS+   S GRMSPR+VEPISPMG R++  AQREK QQQ  SLSSR+ + +N  
Sbjct: 561 VDHALLQASYGGPSSGRMSPRNVEPISPMGSRVSMLAQREK-QQQFRSLSSRE-LGSNSA 618

Query: 611 PNIGSPRNVNSSWSKWGSPSGKLDWSIKGDELELLRRSSSCDLRNNNHEEPDLSWIHSIV 670
             +GS  N   SWSKWGS +GK DW++  DEL  LRRSSS +L  NN EEPDLSW+ S+V
Sbjct: 619 SIVGSSPN---SWSKWGSSNGKPDWAVTTDELGKLRRSSSFEL-GNNEEEPDLSWVQSLV 674

Query: 671 KESPPEMMKEKTANPVVTTA-SSGEALNSNSQADSFDHSVIGAWLEQMQLD 720
           KESP E+ +++T +  VT A SS E  N+NSQ +S DH+V+GAW++QM LD
Sbjct: 675 KESPTEIKEKQTPSSGVTAAGSSNEGSNANSQRESVDHAVLGAWIDQMHLD 725

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398721|gb|ADL36655.1| C3HL domain class transcription factor [Malus x domestica]

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/716 (65%), Positives = 558/716 (77%), Gaps = 29/716 (4%)

Query: 17  NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTP 76
           N+ T ETED+F S+LELA+NND+E FKR +E+DPS++DE+GLWY R  GSKQMV+E RTP
Sbjct: 32  NHLTVETEDAFASLLELAANNDIESFKRSIEQDPSAIDEIGLWYCRQKGSKQMVNEQRTP 91

Query: 77  LMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD 136
           LMVAATYGS+DV+KLIL  S ADVN +CG DR+TALHCAASGG+ N VD V+LLL AGAD
Sbjct: 92  LMVAATYGSIDVMKLILSLSDADVNQACGRDRSTALHCAASGGAENAVDCVKLLLGAGAD 151

Query: 137 PDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDY 196
           P+ +DANGH PIDVIV+PP+L +++  LEE+       V+  +  E  LTVS  + +S  
Sbjct: 152 PNLLDANGHRPIDVIVVPPRLQNVKLALEELL------VINGTAGEKTLTVSTRTIHS-- 203

Query: 197 SSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDE 256
           +SP L+AS     PS      SP   KF + S  + +EK+EYP+DPSLPDIKNSIY+TDE
Sbjct: 204 TSPPLSASPENGSPSALDFTCSPTKSKFYN-SLSSASEKKEYPVDPSLPDIKNSIYSTDE 262

Query: 257 FRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMC 316
           FRM+SFK+RPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMC
Sbjct: 263 FRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMC 322

Query: 317 EYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYVSNGSVVPSPRSSVS 376
           EYAHGVFECWLHPAQYRTRLCKDGTSC RRVCFFAHT EELRPLYVS GS VPSPRSS S
Sbjct: 323 EYAHGVFECWLHPAQYRTRLCKDGTSCARRVCFFAHTTEELRPLYVSTGSAVPSPRSSTS 382

Query: 377 GASVMDMAAAL-LLPGSPSSMSGMSPNPFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGS 435
           GAS MD AAA+ LLPGSPSS++ MSP+PF+ PMSPS NG   SS+ WPQPNVP L+LPGS
Sbjct: 383 GASAMDFAAAMSLLPGSPSSVNVMSPSPFTPPMSPSANGMSHSSLGWPQPNVPALHLPGS 442

Query: 436 NIQSSRLRSSLSARDILPDDFSSLSDFD------SQQHILNDLTCFSQARNNSVSLSRSC 489
           N+QSSRLRSSL ARD+  DDF  L +FD       QQ +LN+L+C SQ   ++ SL+RS 
Sbjct: 443 NLQSSRLRSSLCARDMPADDFDLLPEFDMQQQQLQQQQLLNELSCLSQPSLSNNSLNRSG 502

Query: 490 RPKTLTPSNLDELFSAEISSSPRFSDQA----VFSPTHKSSVLNQFQQPHSMLSPIKTNV 545
           R  TLTPSNLD++FSAE S SPR+SDQ+    VFSPTHKS+VLNQFQ   S+LSPI T  
Sbjct: 503 RRTTLTPSNLDDIFSAE-SLSPRYSDQSLQSGVFSPTHKSAVLNQFQHQQSILSPIHT-T 560

Query: 546 FSPKNVEHPLLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQREKQQQQLHSLSSRDPI 605
           FSPK  +H LLQAS+   S GRMSPR+VEPISPMGPR++  AQREK QQQ  SLSSR+ +
Sbjct: 561 FSPKTADHALLQASYGGPSSGRMSPRNVEPISPMGPRVSMLAQREK-QQQFRSLSSRE-L 618

Query: 606 SNNPIPNIGSPRNVNSSWSKWGSPSGKLDWSIKGDELELLRRSSSCDLRNNNHEEPDLSW 665
            +N    +GS  N   SWSKWGS +GK DW++  DEL  LRRSSS +L  NN EEPDLSW
Sbjct: 619 GSNSASIVGSSPN---SWSKWGSSNGKPDWAVSTDELGKLRRSSSFEL-GNNGEEPDLSW 674

Query: 666 IHSIVKESPPEMMKEKTANPVVT-TASSGEALNSNSQADSFDHSVIGAWLEQMQLD 720
           + S+VKESP ++ +++T++  VT T SS    ++NSQ ++ DH+V+GAW++QM LD
Sbjct: 675 VQSLVKESPTDIKEKQTSSSAVTATGSSNNGPSANSQREAVDHAVLGAWIDQMHLD 730

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	724
TAIR|locus:2064647	716	OXS2 "OXIDATIVE STRESS 2" [Ara	0.919	0.930	0.500	4.8e-170
TAIR|locus:2182250	706	AT5G12850 [Arabidopsis thalian	0.933	0.957	0.460	2.1e-155
TAIR|locus:2178843	607	AT5G58620 [Arabidopsis thalian	0.287	0.342	0.583	5.7e-111
TAIR|locus:2065058	597	CZF1 [Arabidopsis thaliana (ta	0.171	0.207	0.782	2.2e-107
TAIR|locus:2082068	580	SZF1 "salt-inducible zinc fing	0.171	0.213	0.75	6.1e-102
TAIR|locus:2118209	356	OZF2 "oxidation-related zinc f	0.175	0.356	0.617	9.8e-50
UNIPROTKB|Q9FU27	386	LOC_Os01g09620 "Zinc finger CC	0.185	0.347	0.654	2.5e-49
TAIR|locus:2024112	393	SOM "SOMNUS" [Arabidopsis thal	0.169	0.312	0.625	7.7e-48
TAIR|locus:2043565	315	ATCTH [Arabidopsis thaliana (t	0.162	0.374	0.7	9.8e-48
TAIR|locus:2052005	359	OZF1 "Oxidation-related Zinc F	0.165	0.334	0.655	3e-46

TAIR|locus:2064647 OXS2 "OXIDATIVE STRESS 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1638 (581.7 bits), Expect = 4.8e-170, Sum P(2) = 4.8e-170
 Identities = 366/731 (50%), Positives = 442/731 (60%)

Query:    10 SNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQM 69
             +NT DMN+  T ETED+F S+LELA+NNDVEG +  +ERDPS VDE GLWYGR  GSK M
Sbjct:    30 TNT-DMNH-LTVETEDTFASLLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAM 87

Query:    70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRL 129
             V+++RTPLMVAATYGS+DV+KLI+  + ADVN +CG+D+TTALHCAASGG+ N + VV+L
Sbjct:    88 VNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKL 147

Query:   130 LLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSI 189
             LL+AGAD + +DA G    DVIV+PPKL+ ++ +L+E+  +  SS      AE NL V  
Sbjct:   148 LLAAGADLNLLDAEGQRAGDVIVVPPKLEGVKLMLQELLSADGSST-----AERNLRVVT 202

Query:   190 GSSNSDYXXXXXXXXXXXXXXXXXXXXXXXMALKFNDVSFGTGAEKREYPIDPSLPDIKN 249
                N                             K     F     K+EYP+DPSLPDIKN
Sbjct:   203 NVPNRS---SSPCHSPTGENGGSGSGSPLGSPFKLKSTEF-----KKEYPVDPSLPDIKN 254

Query:   250 SIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGA 309
             SIYATDEFRM+SFK+RPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGA
Sbjct:   255 SIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGA 314

Query:   310 CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYXXXXXXXX 369
             CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGT C RRVCFFAHT EELRPLY        
Sbjct:   315 CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELRPLYASTGSAVP 374

Query:   370 XXXXXXXXXXXMDXXXXXXXXXXXXXXXXXXXNPFSQPMSPS--GNGNLQSSMMWPQPNV 427
                        +                         P+SPS  GNG   S+M WPQPNV
Sbjct:   375 SPRSNADYAAALSLLPGSPSGVSVMS-----------PLSPSAAGNGMSHSNMAWPQPNV 423

Query:   428 PTLNLPGSNIQXXXXXXXXXARDILPXXXXXXXXXXXQQHILNDLTCFSQARNNSVSLSR 487
             P L+LPGSN+Q         ARDI P           QQ +LN+   +S A + S  + +
Sbjct:   424 PALHLPGSNLQSSRLRSSLNARDI-PTDEFNMLADYEQQQLLNE---YSNALSRSGRM-K 478

Query:   488 SCRPKTLTPS-NLDELFSAEISSSPRFSDQAVFSPTHKSSVLNQFQQPH----SMLSPIK 542
             S  P  L    + +   S   + S   S  AVFSPTHKS+V NQFQQ      SMLSPI 
Sbjct:   479 SMPPSNLEDLFSAEGSSSPRFTDSALAS--AVFSPTHKSAVFNQFQQQQQQQQSMLSPIN 536

Query:   543 TNVFSPKNVEHPLLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQ-------REKQQQQ 595
             T+  SPK+V+H L     R+ SP  +    VEPISPM  R++  AQ       +++QQQQ
Sbjct:   537 TSFSSPKSVDHSLFSGGGRM-SPRNV----VEPISPMSARVSMLAQCVKQQQQQQQQQQQ 591

Query:   596 LH---SLSSRDPISNNPIPNIGSPRNVNXXXXXXXXXXXXLDWSIKGDELELLRRSSSCD 652
              H   SLSSR+ +  N  P +GSP N N             DW +  + L  LR SSS D
Sbjct:   592 QHQFRSLSSRE-LRTNSSPIVGSPVNNNTWSSKWGSSNGQPDWGMSSEALGKLRSSSSFD 650

Query:   653 LRNNNHEEPDLSWIHSIVKESPPEMMKEKTANPVVTTASSGEALNSNSQADSFDHSVIGA 712
                   +EPD+SW+ S+VKE+P E  KEK A    +++        N      DH+ + A
Sbjct:   651 -----GDEPDVSWVQSLVKETPAEA-KEKAAT---SSSGEHVMKQPNPVEPVMDHAGLEA 701

Query:   713 WLEQMQLDQLV 723
             W+EQMQLDQLV
Sbjct:   702 WIEQMQLDQLV 712

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2182250 AT5G12850 [Arabidopsis thaliana (taxid:3702)]

 Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
 Identities = 334/725 (46%), Positives = 434/725 (59%)

Query:     7 KSESNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGS 66
             ++ES  + MN+   AE E SF+++LE A++NDVEGF+R L  D S ++++GLWY R    
Sbjct:    21 ENESLAKPMND--AAEWEHSFSALLEFAADNDVEGFRRQLS-DVSCINQMGLWYRRQRFV 77

Query:    67 KQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDV 126
             ++MV E RTPLMVA+ YGS+DV+K IL    A++N+SCG D++TALHCAASG S N +DV
Sbjct:    78 RRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDV 137

Query:   127 VRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLT 186
             V+LLLS GADP+  DA+G+ P+DV+V+ P    +R ILEE+   K   ++  S   H  +
Sbjct:   138 VKLLLSVGADPNIPDAHGNRPVDVLVVSPHAPGLRTILEEIL--KKDEII--SEDLHASS 193

Query:   187 VSIGSSNSDYXXXXXXXXXXXXXXXXXXXXXXXMALKFNDVSFGTGAEKREYPIDPSLPD 246
              S+GSS                                 DV+F +  EK+EYPIDPSLPD
Sbjct:   194 SSLGSSFRSLSSSPDNGSSLLSLDSVSSPTKPHGT----DVTFAS--EKKEYPIDPSLPD 247

Query:   247 IKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFR 306
             IK+ IY+TDEFRMFSFKIRPCSRAYSHDWTECPF HPGENARRRDPRKFHY+CVPCPDF+
Sbjct:   248 IKSGIYSTDEFRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPDFK 307

Query:   307 KGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPLYXXXXX 366
             KG+C++GDMCEYAHGVFECWLHPAQYRTRLCKDG  C+RRVCFFAH  EELRPLY     
Sbjct:   308 KGSCKQGDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAHANEELRPLYPSTGS 367

Query:   367 XXXX-XXXXXXXXXXMDXXXXXXXXXXXXXXXXXXXNPFSQPMSPSGNGNL-QSSMMWPQ 424
                            MD                   + F+ P+SPSGNG++  SSM WPQ
Sbjct:   368 GLPSPRASSAVSASTMDMASVLNMLPGSPSAAQ---HSFTPPISPSGNGSMPHSSMGWPQ 424

Query:   425 PNVPTLNLPGSNIQXXXXXXXXXARDILPXXXXXXXXXXXQQHILNDLTCFSQARNNSVS 484
              N+P LNLPGSNIQ         ARDI             Q+ +  D+       ++   
Sbjct:   425 QNIPALNLPGSNIQLSRLRSSLNARDIPSEQLSMLHEFEMQRQLAGDM-------HSPRF 477

Query:   485 LSRSCRPKTLTPSNLDELFSAEISSSPRFSDQ----AVFSPTHKSSVLNQFQQ-PHSMLS 539
             ++ S RPKTL PSNL+ELFSAE++S PRFSDQ    +V SP+HKS++LNQ Q    SMLS
Sbjct:   478 MNHSARPKTLNPSNLEELFSAEVAS-PRFSDQLAVSSVLSPSHKSALLNQLQNNKQSMLS 536

Query:   540 PIKTNVFS-PKNVE-HPLLQASFRVGSPGRMSPRSVEPISPMGPRLAAFAQREKQQQQLH 597
             PIKTN+ S PKNVE H LLQ +         SPR  EPISPM  R+    +++   + L 
Sbjct:   537 PIKTNLMSSPKNVEQHSLLQQA--------SSPRGGEPISPMNARM----KQQLHSRSLS 584

Query:   598 SLSSRDPISNNPIP-NIGSPRNVNXXXXXXXXXXXXLDWSIKGDELELLRRSSSCDLRNN 656
             S      +  + +P + GSP  ++            +DWS++ DEL  LR+S S     N
Sbjct:   585 SRDFGSSLPRDLMPTDSGSP--LSPWSSWDQTHGSKVDWSVQSDELGRLRKSHSLANNPN 642

Query:   657 NHEEPDLSWIHSIVKESPPEMMKEKTANPVVTTASSGEALNSNSQADSFDHSVIGAWLEQ 716
                +   +        SP    +    N        G ++N ++ +D+ +  ++ AWLEQ
Sbjct:   643 READVSWAQQMLKDSSSPRNGNRVVNMNGARPLTQGGSSVNPHN-SDTRESDILDAWLEQ 701

Query:   717 MQLDQ 721
             + LD+
Sbjct:   702 LHLDR 706

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2178843 AT5G58620 [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 5.7e-111, Sum P(3) = 5.7e-111
 Identities = 126/216 (58%), Positives = 145/216 (67%)

Query:   226 DVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGE 285
             +VS   G+E++EYP+DP+LPDIKN +Y TDEFRM++FKI+PCSRAYSHDWTECPFVHPGE
Sbjct:   179 EVSPPRGSERKEYPVDPTLPDIKNGVYGTDEFRMYAFKIKPCSRAYSHDWTECPFVHPGE 238

Query:   286 NARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDR 345
             NARRRDPRK+HYSCVPCP+FRKG+C RGD CEYAHG+FECWLHPAQYRTRLCKD T+C R
Sbjct:   239 NARRRDPRKYHYSCVPCPEFRKGSCSRGDTCEYAHGIFECWLHPAQYRTRLCKDETNCSR 298

Query:   346 RVCFFAHTAEELRPLYXXXXXXX---XXXXXXXXXXXXMDXXXXXXXXXXXXXXXXXXXN 402
             RVCFFAH  EELRPLY                       D                   N
Sbjct:   299 RVCFFAHKPEELRPLYPSTGSGVPSPRSSFSSCNSSTAFDMGPISPLPIGATTTPPLSPN 358

Query:   403 PFSQPMSPSGNGNLQSSMMWPQPNVPTLNLPGSNIQ 438
               S   SP G G  ++ M WP    P L LPGS ++
Sbjct:   359 GVS---SPIGGG--KTWMNWPNITPPALQLPGSRLK 389

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2065058 CZF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 2.2e-107, Sum P(4) = 2.2e-107
 Identities = 97/124 (78%), Positives = 109/124 (87%)

Query:   237 EYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFH 296
             +YP D SLPDI   +Y TD+FRMFSFK++PCSRAYSHDWTECPFVHPGENARRRDPRK+ 
Sbjct:   195 KYPADASLPDINEGVYGTDDFRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYP 254

Query:   297 YSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEE 356
             Y+CVPCP+FRKG+C +GD CEYAHGVFE WLHPAQYRTRLCKD T C RRVCFFAH  +E
Sbjct:   255 YTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARRVCFFAHRRDE 314

Query:   357 LRPL 360
             LRP+
Sbjct:   315 LRPV 318

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009409 "response to cold" evidence=IEP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2082068 SZF1 "salt-inducible zinc finger 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 6.1e-102, Sum P(4) = 6.1e-102
 Identities = 93/124 (75%), Positives = 108/124 (87%)

Query:   237 EYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFH 296
             +YP D SLPDI   +Y +DEFRM+SFK++PCSRAYSHDWTEC FVHPGENARRRDPRK+ 
Sbjct:   192 KYPADASLPDINEGVYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYP 251

Query:   297 YSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEE 356
             Y+CVPCP+FRKG+C +GD CEYAHGVFE WLHPAQY+TRLCKD T C R+VCFFAH  EE
Sbjct:   252 YTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYKTRLCKDETGCARKVCFFAHKREE 311

Query:   357 LRPL 360
             +RP+
Sbjct:   312 MRPV 315

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2118209 OZF2 "oxidation-related zinc finger 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
 Identities = 79/128 (61%), Positives = 98/128 (76%)

Query:   234 EKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPR 293
             +   YP D   PD     Y+ D FRM+ FK+R C+R  SHDWTECP+ HPGE ARRRDPR
Sbjct:    58 DPESYP-DLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPR 116

Query:   294 KFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHT 353
             K+HYS   CPDFRKG C++GD CE+AHGVFECWLHPA+YRT+ CKDG +C R++CFFAH+
Sbjct:   117 KYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHS 176

Query:   354 AEELRPLY 361
              ++LR L+
Sbjct:   177 PDQLRFLH 184

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q9FU27 LOC_Os01g09620 "Zinc finger CCCH domain-containing protein 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 91/139 (65%), Positives = 105/139 (75%)

Query:   222 LKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFV 281
             L  NDV  G GA++ E   + +        YA DEFRM+ FK+R C+R  SHDWTECPF 
Sbjct:    47 LPANDV--GVGADEEE---EAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFA 101

Query:   282 HPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGT 341
             HPGE ARRRDPRK+HYS   CPDFRKG C+RGD CEYAHGVFECWLHPA+YRT+ CKDGT
Sbjct:   102 HPGEKARRRDPRKYHYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGT 161

Query:   342 SCDRRVCFFAHTAEELRPL 360
             +C RRVCFFAHT ++LR L
Sbjct:   162 ACRRRVCFFAHTPDQLRVL 180

GO:0005634 "nucleus" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IC

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

TAIR|locus:2024112 SOM "SOMNUS" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 80/128 (62%), Positives = 93/128 (72%)

Query:   234 EKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPR 293
             E +EY  D    D     YA+D FRMF FKIR C+R+ SHDWT+CPF HPGE ARRRDPR
Sbjct:    64 ENKEYCYDSDSDDP----YASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPR 119

Query:   294 KFHYSCVPCPDFRKGA-CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAH 352
             +F YS   CP+FR+G  C RGD CE+AHGVFECWLHP +YRT  CKDG  C R+VCFFAH
Sbjct:   120 RFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAH 179

Query:   353 TAEELRPL 360
             +  +LR L
Sbjct:   180 SPRQLRVL 187

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010187 "negative regulation of seed germination" evidence=IMP

TAIR|locus:2043565 ATCTH [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 84/120 (70%), Positives = 101/120 (84%)

Query:   241 DPSLPDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCV 300
             D S P + +S +++DEFR++ FKIR C+R  SHDWTECPF HPGE ARRRDPRKFHYS  
Sbjct:    77 DESSP-LTDS-FSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGT 134

Query:   301 PCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELRPL 360
              CP+FRKG+CRRGD CE++HGVFECWLHP++YRT+ CKDGTSC RR+CFFAHT E+LR L
Sbjct:   135 ACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRVL 194

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003677 "DNA binding" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2052005 OZF1 "Oxidation-related Zinc Finger 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 80/122 (65%), Positives = 95/122 (77%)

Query:   241 DPSL--PDIKNSIYATDEFRMFSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYS 298
             DP L  PD     Y  D FRM+ FK+R C+R  SHDWTECP+ HPGE ARRRDPRKFHYS
Sbjct:    61 DPDLSGPDSPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYS 120

Query:   299 CVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEELR 358
                CP+FRKG C+RGD CE++HGVFECWLHPA+YRT+ CKDG +C RRVCFFAH+ +++R
Sbjct:   121 GTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIR 180

Query:   359 PL 360
              L
Sbjct:   181 VL 182

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q10EL1	C3H24_ORYSJ	No assigned EC number	0.5796	0.9337	0.8848	yes	no
P93755	C3H30_ARATH	No assigned EC number	0.5704	0.9267	0.9371	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	724
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-09
smart00356	27	smart00356, ZnF_C3H1, zinc finger	7e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	1e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-04
smart00248	30	smart00248, ANK, ankyrin repeats	6e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.002
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	0.004
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 23/146 (15%)

Query: 21  AETEDSFTSMLELASNNDVEGFKRMLER--DPSSVDEVGLWYGRVNGSKQMVSEHRTPLM 78
           A  ED  T +   ASN  +E  K +LE   D ++ D  G                RTPL 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDG----------------RTPLH 45

Query: 79  VAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPD 138
           +AA  G ++++KL LL   ADVN     D  T LH AA  G+   +DVV+LLL  GAD +
Sbjct: 46  LAAKNGHLEIVKL-LLEKGADVNA-RDKDGNTPLHLAARNGN---LDVVKLLLKHGADVN 100

Query: 139 CVDANGHHPIDVIVLPPKLDSMRAIL 164
             D +G  P+ +      L+ ++ +L
Sbjct: 101 ARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 76.7 bits (189), Expect = 1e-16
 Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 24/136 (17%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPL +AA+ G ++V+KL LL + ADVN    +D  T LH AA  G    +++V+LLL  
Sbjct: 8   RTPLHLAASNGHLEVVKL-LLENGADVNA-KDNDGRTPLHLAAKNGH---LEIVKLLLEK 62

Query: 134 GADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSN 193
           GAD +  D +G+ P+ +      LD ++ +L+              GA+ N        +
Sbjct: 63  GADVNARDKDGNTPLHLAARNGNLDVVKLLLK-------------HGADVNA------RD 103

Query: 194 SDYSSPLLTASASGSP 209
            D  +PL  A+ +G  
Sbjct: 104 KDGRTPLHLAAKNGHL 119

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 21/108 (19%)

Query: 34  ASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL 93
           A N ++E  K +LE                 G+   + +  T L +AA  G+++++KL L
Sbjct: 5   AKNGNLELVKLLLE----------------KGADVNLGDTDTALHLAARNGNLEIVKL-L 47

Query: 94  LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD 141
           L   ADVN       T ALH AA  G+   +++V+LLL  GAD +  D
Sbjct: 48  LEHGADVNAKDKDGNT-ALHLAARNGN---LEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 7/72 (9%)

Query: 77  LMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD 136
           L +AA  G+++++KL LL   ADVN+    D  TALH AA  G+   +++V+LLL  GAD
Sbjct: 1   LHLAAKNGNLELVKL-LLEKGADVNLG---DTDTALHLAARNGN---LEIVKLLLEHGAD 53

Query: 137 PDCVDANGHHPI 148
            +  D +G+  +
Sbjct: 54  VNAKDKDGNTAL 65

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 59.7 bits (145), Expect = 3e-09
 Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 75  TPLMVAATYGSV-DVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           TPL +     +  DV+KL L+ + ADVN      RT  LH   SG + N   V+RLLL  
Sbjct: 85  TPLHLYLYNATTLDVIKL-LIKAGADVNAKDKVGRT-PLHVYLSGFNINP-KVIRLLLRK 141

Query: 134 GADPDCVDANGHHPIDVIV 152
           GAD + +D  G  P+ V++
Sbjct: 142 GADVNALDLYGMTPLAVLL 160

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 73  HRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
            RT L  AA  G ++++K +L     D+N +      TALH AA  G+   ++V++LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEK-GVDINRTDEDGN-TALHIAAENGN---LEVLKLLL 54

Length = 54

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 45.7 bits (109), Expect = 7e-07
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 297 YSCVPCPDFRKGACRRGDMCEYAHG 321
           Y    C  F++G C RGD C++AH 
Sbjct: 2   YKTELCKFFKRGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 110 TALHCAASGGSANVVDVVRLLLSAGADPDCVD 141
           T LH AA  G    ++VV+LLL AGAD +  D
Sbjct: 4   TPLHLAARNGH---LEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 92  ILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID 149
           +L H   D+N + G+   T LH AA  G+    ++V+ LL  G D +  D++G   +D
Sbjct: 1   LLEHGPIDLNATDGN-GNTPLHLAAKYGAL---ELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.1 bits (111), Expect = 9e-06
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 68  QMVSEHRTPLMVAATYGS-----VDVLKLILLH-SSADVNVSCGSDRTTALHCAASGGSA 121
              ++  TPL +AA  G+     ++V KL+L   +  DVN     D  T LH AA  G A
Sbjct: 101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA 160

Query: 122 NVVDVVRLLLSAGADPDCVDANGHHPID 149
              D+V LLL AGADP+  ++ G   +D
Sbjct: 161 ---DIVELLLEAGADPNSRNSYGVTALD 185

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 108 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
             TALH AA  G    +++V+ LL  G D +  D +G
Sbjct: 1   GRTALHKAAISGR---LELVKYLLEKGVDINRTDEDG 34

Length = 54

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 13/119 (10%)

Query: 42  FKRMLERDPSSVDEVGLWY---GRVNGSKQMVSEHRTPLMVAAT----YGS-VDVLKLIL 93
           F++ L+RD  S D V L+      VNG     +E+ TPL    +    Y   +D++K+++
Sbjct: 40  FQKYLQRDSPSTDIVKLFINLGANVNGLD---NEYSTPLCTILSNIKDYKHMLDIVKILI 96

Query: 94  LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIV 152
            +  AD+N    SD  T L+C  S G  N ++++  ++  GAD   +D +G   + V +
Sbjct: 97  ENG-ADINKK-NSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYL 153

Length = 489

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNV 102
            TPL +AA  G ++V+KL LL + ADVN 
Sbjct: 3   NTPLHLAARNGHLEVVKL-LLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 113 HCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN 172
             AASG +       R+LL+ GADP+C D +G  P+ +      +  +R +LE  FG+ +
Sbjct: 88  QLAASGDAVGA----RILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLE--FGA-D 140

Query: 173 SSVVVASG------AEHNLTVSIGSSNSDYSSPLLTASASGSPPS----PSRLVSSPMAL 222
            +++   G      AE N    +    S +S       A+  P S    P  L  SP++ 
Sbjct: 141 PTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSPISS 200

Query: 223 KFNDVS 228
              D S
Sbjct: 201 HHPDFS 206

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCA 115
            TPL +AA YG++++++  LL    D+N+   SD  TAL  A
Sbjct: 17  NTPLHLAAKYGALELVQW-LLKPGVDLNL-RDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 75  TPLMVAATY-GSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           TPL ++  Y    D+LKL+L H   DVN        TALH      S      ++LLL  
Sbjct: 236 TPLHISVGYCKDYDILKLLLEHG-VDVNAKSYILGLTALHS-----SIKSERKLKLLLEY 289

Query: 134 GADPDCVDANGHHPIDVIVL 153
           GAD + +++    P+   V 
Sbjct: 290 GADINSLNSYKLTPLSSAVK 309

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 33/168 (19%), Positives = 75/168 (44%), Gaps = 28/168 (16%)

Query: 43  KRMLERDPSSVDE-----VGLWYGRVNGSKQMVSEHR-----------TPLMVAATYGSV 86
            R  + D  + D+     + +  G + G + ++ +H+           TPL++A   G +
Sbjct: 123 ARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI-DHKACLDIEDCCGCTPLIIAMAKGDI 181

Query: 87  DVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPD---CVDAN 143
            + K +LL S A+++   G +   A  C A     N +D+VRL +  GAD +    ++  
Sbjct: 182 AICK-MLLDSGANIDY-FGKNGCVAALCYAI--ENNKIDIVRLFIKRGADCNIMFMIEGE 237

Query: 144 GHHPIDVIV---LPPKLDSMRAILEEVFGSKNSSVVVA-SGAEHNLTV 187
               +D+I       + +++ A++ ++    +   +    G ++N++ 
Sbjct: 238 ECTILDMICNMCTNLESEAIDALIADIAIRIHKKTIRRDEGFKNNMST 285

Length = 413

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 110 TALHCAASGGSANVVDVVRLLLSAGADPDC 139
           T LH AA  G+   ++VV+LLL  GAD + 
Sbjct: 4   TPLHLAAENGN---LEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.9 bits (99), Expect = 9e-04
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 85  SVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
           +V+ ++  LL + ADVN   G    T LH      S  V D+VRLLL AGAD +  +  G
Sbjct: 26  TVEEVRR-LLAAGADVNFR-GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCG 83

Query: 145 HHPI 148
             P+
Sbjct: 84  FTPL 87

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 35/170 (20%)

Query: 73  HRTPLMVAATYGSVD--VLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
            RTPL V  +  +++  V++ +LL   ADVN       T  L       +ANV +++RLL
Sbjct: 117 GRTPLHVYLSGFNINPKVIR-LLLRKGADVNALDLYGMT-PLAVLLKSRNANV-ELLRLL 173

Query: 131 LSAGADPDCVDANGHHPIDVIVLPPKLDS--MRAILE-------------------EVFG 169
           + AGAD   VD      +   +   K  +  +R ++                        
Sbjct: 174 IDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGS 233

Query: 170 SKNSSVV---VASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV 216
           S   S+V   + +G      +SI + N    +PL  A+   +P +  RL+
Sbjct: 234 SCKRSLVLPLLIAG------ISINARNRYGQTPLHYAAVFNNPRACRRLI 277

Length = 471

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)

Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNV 102
           + RTPL +AA  G+++V+KL LL   AD+N 
Sbjct: 1   DGRTPLHLAAENGNLEVVKL-LLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 300 VPCPDFRK-GACRRGDMCEYAHGV 322
             C  F + G C+ GD C++AHG 
Sbjct: 4   ELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDC 139
           D  T LH AA  G+   +++V+LLL  GAD + 
Sbjct: 1   DGNTPLHLAARNGN---LELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	724
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.96
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA02874	434	ankyrin repeat protein; Provisional	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.94
PHA02878	477	ankyrin repeat protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA03100	480	ankyrin repeat protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA02946	446	ankyin-like protein; Provisional	99.93
PHA02874	434	ankyrin repeat protein; Provisional	99.93
PHA03100	480	ankyrin repeat protein; Provisional	99.93
PHA02798	489	ankyrin-like protein; Provisional	99.93
PHA02946	446	ankyin-like protein; Provisional	99.93
PHA03095	471	ankyrin-like protein; Provisional	99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.92
PHA02989	494	ankyrin repeat protein; Provisional	99.92
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.92
PHA02876	682	ankyrin repeat protein; Provisional	99.92
PHA02989	494	ankyrin repeat protein; Provisional	99.92
PHA02791	284	ankyrin-like protein; Provisional	99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
KOG0508	615	consensus Ankyrin repeat protein [General function	99.91
PHA02798	489	ankyrin-like protein; Provisional	99.9
KOG0510	929	consensus Ankyrin repeat protein [General function	99.89
PHA02859	209	ankyrin repeat protein; Provisional	99.88
PHA02917	661	ankyrin-like protein; Provisional	99.88
KOG0508	615	consensus Ankyrin repeat protein [General function	99.87
PHA02917	661	ankyrin-like protein; Provisional	99.86
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.85
PHA02795	437	ankyrin-like protein; Provisional	99.85
PHA02795	437	ankyrin-like protein; Provisional	99.85
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.84
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.83
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.83
KOG0514	452	consensus Ankyrin repeat protein [General function	99.83
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02792	631	ankyrin-like protein; Provisional	99.83
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.82
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.82
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.81
PHA02730	672	ankyrin-like protein; Provisional	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PHA02730	672	ankyrin-like protein; Provisional	99.8
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.79
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.77
PHA02743	166	Viral ankyrin protein; Provisional	99.75
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.75
PHA02741	169	hypothetical protein; Provisional	99.75
PHA02792	631	ankyrin-like protein; Provisional	99.74
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.73
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.72
PHA02884	300	ankyrin repeat protein; Provisional	99.71
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.71
PHA02736	154	Viral ankyrin protein; Provisional	99.7
KOG0514	452	consensus Ankyrin repeat protein [General function	99.69
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.68
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.67
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.65
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.65
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.63
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.61
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.59
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.57
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.55
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.55
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.54
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.5
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.47
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.39
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.34
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.28
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.28
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.28
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.24
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.21
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.19
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.17
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.02
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.73
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.71
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.71
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.61
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.54
PF13606	30	Ank_3: Ankyrin repeat	98.48
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.43
PF13606	30	Ank_3: Ankyrin repeat	98.43
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.43
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.38
KOG0522	560	consensus Ankyrin repeat protein [General function	98.3
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.3
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.28
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.21
KOG0522	560	consensus Ankyrin repeat protein [General function	98.14
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	98.12
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.1
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.98
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.98
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.96
KOG0511	516	consensus Ankyrin repeat protein [General function	97.92
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.87
KOG2384	223	consensus Major histocompatibility complex protein	97.85
KOG0511	516	consensus Ankyrin repeat protein [General function	97.76
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.75
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.69
KOG2384	223	consensus Major histocompatibility complex protein	97.59
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.48
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	97.47
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	96.76
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.26
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.19
KOG2505	591	consensus Ankyrin repeat protein [General function	96.06
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	95.84
KOG2505	591	consensus Ankyrin repeat protein [General function	94.64
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	94.34
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	93.68
smart00356	27	ZnF_C3H1 zinc finger.	93.65
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	93.5
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	92.75
smart00356	27	ZnF_C3H1 zinc finger.	92.52
KOG2333	614	consensus Uncharacterized conserved protein [Gener	92.5
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	89.56
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	88.41
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	84.95
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	84.12
KOG1040	325	consensus Polyadenylation factor I complex, subuni	82.61

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=2e-80  Score=674.30  Aligned_cols=502  Identities=42%  Similarity=0.633  Sum_probs=384.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC
Q 004911           28 TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSD  107 (724)
Q Consensus        28 TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~  107 (724)
                      |-|-+-++.++++-+|.++++++..++..++||.++.+.+.+..+.+|+|++|+.+|.++++.+++..+-.++|..|..+
T Consensus        13 s~~~e~~~~~~~~~~k~~~~e~~~~~~~~~~~~r~~~~~k~~~~~qR~~~~v~~~~Gs~~~~~~i~~~~~~e~~~~C~~~   92 (528)
T KOG1595|consen   13 SCLSEFEAPNDYAYLKEFRVEQPLFLQHKCLQHRPFVCFKWHFLNQRRRRPVARRDGSFNYSPDIYCTKYDEVTGICPDG   92 (528)
T ss_pred             hcchhhccccHHHHHHHHHHhchhhhhhhhcccccchhhhhhhhccccccchhhhcCccccccceeecchhhccccCCCC
Confidence            44447788899999999999889999999999999999999999999999999999999999999988678999987655


Q ss_pred             CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHH---HHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccc
Q 004911          108 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI---DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHN  184 (724)
Q Consensus       108 G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPL---hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~  184 (724)
                      +.   |+|+.+...+.++++..|+..++..+.+|..|.-+.   |.|...+-.+ .+..++.+++.+..           
T Consensus        93 ~~---~C~~~g~s~~~~e~~~hL~~~k~~~~~tda~g~~~~~v~~~~~~~~~~~-~r~~~~~l~e~~~~-----------  157 (528)
T KOG1595|consen   93 DE---HCAVLGRSVGDTERTYHLRYYKTLPCVTDARGNCVKNVLHCAFAHGPND-LRPPVEDLLELQGG-----------  157 (528)
T ss_pred             cc---cchhcccccCCcceeEeccccccccCccccCCCcccCcccccccCCccc-cccHHHHHHhcccc-----------
Confidence            54   888887776668999999999999999999988664   4344433221 22233322222200           


Q ss_pred             cccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccCCCCccccccccCCCCCCCCCCcccccccccccccccccee
Q 004911          185 LTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKI  264 (724)
Q Consensus       185 l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV  264 (724)
                                           .|            ..+...+.....+.  -.|+++..++++. ++|..|+|+||.|||
T Consensus       158 ---------------------~~------------~~~~e~~~~~~~~~--~~y~~Dp~~pdi~-~~ys~DeFrMy~fKi  201 (528)
T KOG1595|consen  158 ---------------------SG------------LPDDEPEVESKLDV--TEYPEDPSWPDIN-GIYSSDEFRMYSFKI  201 (528)
T ss_pred             ---------------------cC------------ccCCCccccccccc--ccccCCCCccccc-ccccccceEEEeeee
Confidence                                 00            00000000000001  1889999999988 999999999999999


Q ss_pred             eccCccCCCCCCCCcccCCCCCccCCCCccCccccCCCCCCCCCcCCCCCCcccCCCcccccCCccccccccCCCCCCCC
Q 004911          265 RPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCD  344 (724)
Q Consensus       265 ~pCsr~~shdwteCpf~H~ge~arRRdPr~y~Ys~~~CP~~rkG~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~~~C~  344 (724)
                      ++|.|.++||||+|||+|+||++|||+||+|+|++++||+|++|.|.+||.|+|||+++|||+||++|||++|+++++|+
T Consensus       202 r~C~R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg~~C~  281 (528)
T KOG1595|consen  202 RRCSRPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFECWLHPARYRTRKCKDGGYCP  281 (528)
T ss_pred             cccCCccCCCcccCCccCCCcccccCCcccccccCccCcccccCCCCCCCccccccceehhhcCHHHhccccccCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCccccccccCCCCCCC-CCCCCCCCchhhHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCC
Q 004911          345 RRVCFFAHTAEELRPLYVSNGSVVPS-PRSSVSGASVMDMAAALLLPGSPSSMSGMSPNPFSQPMSPSGNGNL--QSSMM  421 (724)
Q Consensus       345 ~~~C~faH~~~e~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  421 (724)
                      |+||||||.++|||+++.++|+.+++ |+++.+    .++.+.+    .   ..+.+|++.+||+||++++.+  +.++.
T Consensus       282 RrvCfFAH~~eqLR~l~~s~~s~~~~sp~~s~~----sp~~~~~----~---~~~~s~~~~~~p~sp~~~~~~~~~~~~~  350 (528)
T KOG1595|consen  282 RRVCFFAHSPEQLRPLPPSTGSDRPSSPSSSSA----SPMMASL----R---SLPFSPSPGSPPLSPSANGVSSPIASGG  350 (528)
T ss_pred             cceEeeecChHHhcccCCCCCCCCCCCcccccC----CCCcccc----c---cCCCCCCCCCCCCCcccccccccccccc
Confidence            99999999999999999999999998 444321    2222221    1   122234458899999988854  45789


Q ss_pred             CCCCCCCCcCCCCCCccc-cccccccccCCCCccccccccchhhhHHHhhhccccccCcCCCccccccCCCCCCCCCchh
Q 004911          422 WPQPNVPTLNLPGSNIQS-SRLRSSLSARDILPDDFSSLSDFDSQQHILNDLTCFSQARNNSVSLSRSCRPKTLTPSNLD  500 (724)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (724)
                      |.+++++++..|+.+|++ |||++.++||||...     ..+++                                -||+
T Consensus       351 s~~~~~~~~~~p~~~~~~~Srl~s~~~a~~i~~~-----~~~~~--------------------------------~~l~  393 (528)
T KOG1595|consen  351 SRSLNSNSPSSPAAPLRSFSRLSSSLSAADISMS-----SPMNL--------------------------------GNLS  393 (528)
T ss_pred             ccccCCCCCCCccccccccccccccccccccccc-----ccccc--------------------------------ccch
Confidence            999999999999999998 999999999998431     11111                                0899


Q ss_pred             HHhhhcccCCCCCCCCcccccccccccccccccc-cccCCCCccccCCCCCCCCccccccccCCCCCCCCCCCCCCCCCc
Q 004911          501 ELFSAEISSSPRFSDQAVFSPTHKSSVLNQFQQP-HSMLSPIKTNVFSPKNVEHPLLQASFRVGSPGRMSPRSVEPISPM  579 (724)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (724)
                      ++|+++.++                ++.+|+|+. +.+++|++++.++.          .++++++..|.-+    ..+|
T Consensus       394 ~~f~s~~ss----------------sl~~~~~~~~~~~tsP~~~~~~~~----------~~~~e~s~~~~~~----~~~~  443 (528)
T KOG1595|consen  394 ELFSSPDSS----------------SLNPQLQVLSSAPTSPVFTDTASF----------GSSVESSPAMEGR----SQVM  443 (528)
T ss_pred             hhhcCcccc----------------ccchhhhhcccCCcCCcCCccccc----------ccccccchhhhcc----cccc
Confidence            999998875                445666654 56788887762221          1222322223211    1589


Q ss_pred             chhH-HHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCccccChhhhccccccccccCCCCC
Q 004911          580 GPRL-AAFAQREKQQQQLHSLSSRDPISNNPIPNIGSPRNVNSSWSKWGSPSG-KLDWSIKGDELELLRRSSSCDLRNNN  657 (724)
Q Consensus       580 ~~r~-~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~w~s~~g-k~dw~~~~~el~~~~~s~s~~~~~~~  657 (724)
                      ++|. .++++|+-+      ++. +.       ..+++...+...+|||+.+| |+||++|+|||+|+|++.||+.+.  
T Consensus       444 ~~r~l~~~l~~~~~------~s~-~~-------~~~~~~~~~~~~~d~g~~~g~~~d~~~~~~~l~~~r~~~s~~~~~--  507 (528)
T KOG1595|consen  444 SSRELRASLKRSST------LSD-KP-------AMNSSGQFSFNNSDWGPRAGELLDWGVQSDLLNKLRESTSFELGS--  507 (528)
T ss_pred             cchhhhhhhccccc------ccc-cc-------cccCccccccccCCcCcccCcccchhhhHHHHhhcccCcccccCC--
Confidence            9998 677776421      222 11       11111110124489999999 999999999999999999999987  


Q ss_pred             CCCCCcccchhcccCCC
Q 004911          658 HEEPDLSWIHSIVKESP  674 (724)
Q Consensus       658 ~~epd~swv~~~~~~~~  674 (724)
                      ..||||||||+||||.+
T Consensus       508 ~~~pd~swv~~ll~~~~  524 (528)
T KOG1595|consen  508 AGEPDVSWVQSLLKEPA  524 (528)
T ss_pred             CCCcCcchhhhhccccc
Confidence            45999999999999986

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.5e-30  Score=249.62  Aligned_cols=177  Identities=25%  Similarity=0.282  Sum_probs=154.9

Q ss_pred             CCCCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 004911           19 STAETE-DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS   97 (724)
Q Consensus        19 i~~~d~-~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G   97 (724)
                      ++.+++ ||+||||+||..|+.++|++|+...+..+|..             |..||||||+||..|+.++|+.||.+.|
T Consensus        30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk-------------DdaGWtPlhia~s~g~~evVk~Ll~r~~   96 (226)
T KOG4412|consen   30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK-------------DDAGWTPLHIAASNGNDEVVKELLNRSG   96 (226)
T ss_pred             hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCc-------------cccCCchhhhhhhcCcHHHHHHHhcCCC
Confidence            455554 99999999999999999999998677888876             7899999999999999999999999889


Q ss_pred             CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhh
Q 004911           98 ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVV  177 (724)
Q Consensus        98 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~  177 (724)
                      +|+|.. +..|.|+||||+..|.   .+|+++||++||.++++|+.|.||||-|+..|+++++++|+..    ++     
T Consensus        97 advna~-tn~G~T~LHyAagK~r---~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~----~a-----  163 (226)
T KOG4412|consen   97 ADVNAT-TNGGQTCLHYAAGKGR---LEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQ----GA-----  163 (226)
T ss_pred             CCccee-cCCCcceehhhhcCCh---hhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhc----CC-----
Confidence            999999 9999999999999999   9999999999999999999999999999999998887766653    32     


Q ss_pred             hcccccccccccCCCCCCCCChhchhHhcCCCch----hhhhcCCCccccCCCCccccc
Q 004911          178 ASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPS----PSRLVSSPMALKFNDVSFGTG  232 (724)
Q Consensus       178 aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~ei----Ve~Lad~~a~~~~g~TpLh~A  232 (724)
                                .+|.+|+.|+||||.|...|+.++    |+.+++....|+.| |++..|
T Consensus       164 ----------~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a  211 (226)
T KOG4412|consen  164 ----------PLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIA  211 (226)
T ss_pred             ----------CCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHH
Confidence                      677889999999999988888877    77777777888877 776554

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.2e-29  Score=269.30  Aligned_cols=202  Identities=15%  Similarity=0.151  Sum_probs=176.7

Q ss_pred             CCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 004911           18 NSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS   97 (724)
Q Consensus        18 di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G   97 (724)
                      +.+..|.+|.||||+|+..|+.++++.||+ .|++++..               +|+||||+|+..|+.++|++||++ |
T Consensus        22 ~a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~-~ga~~n~~---------------d~~TpLh~Aa~~g~~eiV~lLL~~-G   84 (284)
T PHA02791         22 DAFKADVHGHSALYYAIADNNVRLVCTLLN-AGALKNLL---------------ENEFPLHQAATLEDTKIVKILLFS-G   84 (284)
T ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHH-CcCCCcCC---------------CCCCHHHHHHHCCCHHHHHHHHHC-C
Confidence            345789999999999999999999999999 78887753               478999999999999999999999 9


Q ss_pred             CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCC-cHHHHHhcCCCHHHHHHHHHHHHcCCCCchh
Q 004911           98 ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGH-HPIDVIVLPPKLDSMRAILEEVFGSKNSSVV  176 (724)
Q Consensus        98 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~-TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~  176 (724)
                      +++|.. |..|+||||+|+..|+   .++|++|+++|++++.++..|+ ||||+|+..|+.++++.|++.    +..   
T Consensus        85 advn~~-d~~G~TpLh~Aa~~g~---~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~----~~~---  153 (284)
T PHA02791         85 MDDSQF-DDKGNTALYYAVDSGN---MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE----IPS---  153 (284)
T ss_pred             CCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhc----CCc---
Confidence            999998 9999999999999999   9999999999999999999885 899999999999999888763    210   


Q ss_pred             hhcccccccccccCCCC-CCCCChhchhHhcCCCchhhhhc----CCCccccCCCCc-cccccccCCCCCCCCCCccccc
Q 004911          177 VASGAEHNLTVSIGSSN-SDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVS-FGTGAEKREYPIDPSLPDIKNS  250 (724)
Q Consensus       177 ~aa~~~~~l~~~in~~d-~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~Tp-Lh~Aa~~g~~~i~~~L~d~ga~  250 (724)
                                    ..| ..|.||||+|+..|+.++++.|+    +.+.++..|.|| ||+|+..|+.++++.|++.|++
T Consensus       154 --------------~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~  219 (284)
T PHA02791        154 --------------TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN  219 (284)
T ss_pred             --------------ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC
Confidence                          012 24799999999999999966655    566677788887 9999999999999999999999


Q ss_pred             cccccccccccc
Q 004911          251 IYATDEFRMFSF  262 (724)
Q Consensus       251 i~~~D~~g~~~f  262 (724)
                      ++..|..+ +.+
T Consensus       220 in~~~~~~-~~l  230 (284)
T PHA02791        220 IYSVNLEN-VLL  230 (284)
T ss_pred             CccCcccC-ccC
Confidence            99998743 444

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.3e-29  Score=243.24  Aligned_cols=204  Identities=20%  Similarity=0.243  Sum_probs=181.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004911           26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG  105 (724)
Q Consensus        26 g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d  105 (724)
                      +.++.+.++...-..-|+.+++.....++.+.            |.+|+||||+||..|+.+||++||+..+..+|.+ |
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~------------dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk-D   69 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARD------------DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK-D   69 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccc------------cccCCceeeeeeecCchhHHHHHHhcCCCCCCCc-c
Confidence            45778888888888999999997665666653            5699999999999999999999997779999999 9


Q ss_pred             CCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccc
Q 004911          106 SDRTTALHCAASGGSANVVDVVRLLLSA-GADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHN  184 (724)
Q Consensus       106 ~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~  184 (724)
                      ..||||||+||..|+   .++|+.||.+ |+|+|.++..|.|+||||+-.|++++++.|++.    |+            
T Consensus        70 daGWtPlhia~s~g~---~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~----ga------------  130 (226)
T KOG4412|consen   70 DAGWTPLHIAASNGN---DEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEK----GA------------  130 (226)
T ss_pred             ccCCchhhhhhhcCc---HHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhc----CC------------
Confidence            999999999999999   9999999999 999999999999999999999999999877763    32            


Q ss_pred             cccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCccccccccccccccc
Q 004911          185 LTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMF  260 (724)
Q Consensus       185 l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~  260 (724)
                         .++.+|..|.||||.|+..|..+++++|+    ..|..|+.|.||||.|...++.++...|+..|++++..|+.+ +
T Consensus       131 ---~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t  206 (226)
T KOG4412|consen  131 ---LIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-T  206 (226)
T ss_pred             ---CCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-c
Confidence               57788999999999999999999977765    567889999999999988899999999999999999999977 6


Q ss_pred             cceee
Q 004911          261 SFKIR  265 (724)
Q Consensus       261 ~fkV~  265 (724)
                      ..++.
T Consensus       207 ~~~~a  211 (226)
T KOG4412|consen  207 ALRIA  211 (226)
T ss_pred             hHHHH
Confidence            65554

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=2e-28  Score=272.35  Aligned_cols=207  Identities=23%  Similarity=0.251  Sum_probs=185.9

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 004911           23 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV  102 (724)
Q Consensus        23 d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~  102 (724)
                      ++--.+.++.|++.|+++.||.|++.+|.+++..             |.+|.|+||+||.+++++++++||++ |||||.
T Consensus        41 ~d~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~-------------D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~  106 (600)
T KOG0509|consen   41 EDSSLDDIVKATQYGELETVKELVESEGESVNNP-------------DREGVTLLHWAAINNRLDVARYLISH-GADVNA  106 (600)
T ss_pred             cchhhhhhhhHhhcchHHHHHHHHhhcCcCCCCC-------------CcCCccceeHHHHcCcHHHHHHHHHc-CCCccc
Confidence            3444678999999999999999999668988887             68999999999999999999999999 999999


Q ss_pred             ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccc
Q 004911          103 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE  182 (724)
Q Consensus       103 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~  182 (724)
                      .++.-+.|||||||++|+   +.+|++||++|||++.+|.+|.+|||+|+..|+.-.+-++|-.    +           
T Consensus       107 ~gG~l~stPLHWAar~G~---~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~----~-----------  168 (600)
T KOG0509|consen  107 IGGVLGSTPLHWAARNGH---ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSK----G-----------  168 (600)
T ss_pred             cCCCCCCCcchHHHHcCc---HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHh----c-----------
Confidence            977899999999999999   9999999999999999999999999999999998777766653    3           


Q ss_pred             cccccccCCCCCCCCChhchhHhcCCCch----hhhhcCCCccc-cCCCCccccccccCCCCCCCCCCcccccccccccc
Q 004911          183 HNLTVSIGSSNSDYSSPLLTASASGSPPS----PSRLVSSPMAL-KFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEF  257 (724)
Q Consensus       183 ~~l~~~in~~d~~G~TPLh~Aa~~G~~ei----Ve~Lad~~a~~-~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~  257 (724)
                          .+++.+|.+|+||||+|+..|....    ++.++.....| +.|.||||+|+..|+..++..|.+.|++.+.+|..
T Consensus       169 ----~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~  244 (600)
T KOG0509|consen  169 ----ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTN  244 (600)
T ss_pred             ----ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccC
Confidence                2678899999999999999999874    55556666666 78999999999999999999778888999999999


Q ss_pred             ccccceee
Q 004911          258 RMFSFKIR  265 (724)
Q Consensus       258 g~~~fkV~  265 (724)
                      |.+++..+
T Consensus       245 g~tp~~LA  252 (600)
T KOG0509|consen  245 GKTPFDLA  252 (600)
T ss_pred             CCCHHHHH
Confidence            99998887

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.7e-28  Score=274.08  Aligned_cols=235  Identities=17%  Similarity=0.129  Sum_probs=197.2

Q ss_pred             ccccCCCCCCCCCCCchHHHHHHHcC---CHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcC-CHH
Q 004911           12 TEDMNNNSTAETEDSFTSMLELASNN---DVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYG-SVD   87 (724)
Q Consensus        12 ~~~m~~di~~~d~~g~TpLh~AA~~G---~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G-~~e   87 (724)
                      ..+.+++++..+..|.||||.|+..|   +.++++.|++ .|+++|..             +..|+||||+|+..| +.+
T Consensus        33 Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~-~Gadin~~-------------~~~g~TpLh~A~~~~~~~~   98 (471)
T PHA03095         33 LLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLE-AGADVNAP-------------ERCGFTPLHLYLYNATTLD   98 (471)
T ss_pred             HHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCcHH
Confidence            34468889999999999999999998   9999999999 89999987             579999999999999 599


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcHHHHHH--hCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCC--CHHHHHHH
Q 004911           88 VLKLILLHSSADVNVSCGSDRTTALHCAA--SGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPP--KLDSMRAI  163 (724)
Q Consensus        88 vVklLLe~~GADVN~~~d~~G~TPLH~Aa--~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G--~~eivk~L  163 (724)
                      ++++|+++ |+++|.. +..|.||||+|+  ..++   .+++++|+++|++++.+|..|.||||+|+..+  +.++++.|
T Consensus        99 iv~lLl~~-ga~in~~-~~~g~tpLh~a~~~~~~~---~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~L  173 (471)
T PHA03095         99 VIKLLIKA-GADVNAK-DKVGRTPLHVYLSGFNIN---PKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLL  173 (471)
T ss_pred             HHHHHHHc-CCCCCCC-CCCCCCHHHHHhhCCcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHH
Confidence            99999999 9999999 999999999999  4456   89999999999999999999999999998765  56777776


Q ss_pred             HHHHHcC------CCCchhhhccccc---c-------cccccCCCCCCCCChhchhHhcCCCc------hhhhhcCCCcc
Q 004911          164 LEEVFGS------KNSSVVVASGAEH---N-------LTVSIGSSNSDYSSPLLTASASGSPP------SPSRLVSSPMA  221 (724)
Q Consensus       164 Le~Ll~~------ga~~~~~aa~~~~---~-------l~~~in~~d~~G~TPLh~Aa~~G~~e------iVe~Lad~~a~  221 (724)
                      ++.....      |.++.+.++....   .       ...+++.+|..|.||||+|+..|+..      .++.+++.+..
T Consensus       174 l~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~  253 (471)
T PHA03095        174 IDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINAR  253 (471)
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCc
Confidence            6643221      1122222221100   0       11356788999999999999999753      26667888999


Q ss_pred             ccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          222 LKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       222 ~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      +..|.||||+|+..|+..++..|++.|++++..|..|.++++.+
T Consensus       254 d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A  297 (471)
T PHA03095        254 NRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLM  297 (471)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999998876

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=268.81  Aligned_cols=176  Identities=19%  Similarity=0.168  Sum_probs=154.6

Q ss_pred             CcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q 004911           66 SKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGH  145 (724)
Q Consensus        66 ~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~  145 (724)
                      .+..+..|.||||+|+..|+.++|++|+++ |+++|.. +.+|.||||+|+..|+   .+++++|+++|++++..|..|.
T Consensus       117 ~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~-gad~n~~-d~~g~tpLh~A~~~~~---~~iv~~Ll~~g~~~n~~~~~g~  191 (434)
T PHA02874        117 VNIKDAELKTFLHYAIKKGDLESIKMLFEY-GADVNIE-DDNGCYPIHIAIKHNF---FDIIKLLLEKGAYANVKDNNGE  191 (434)
T ss_pred             CCCCCCCCccHHHHHHHCCCHHHHHHHHhC-CCCCCCc-CCCCCCHHHHHHHCCc---HHHHHHHHHCCCCCCCCCCCCC
Confidence            445678899999999999999999999999 9999999 9999999999999999   9999999999999999999999


Q ss_pred             cHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCch--hhhhcCCCcccc
Q 004911          146 HPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPS--PSRLVSSPMALK  223 (724)
Q Consensus       146 TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~ei--Ve~Lad~~a~~~  223 (724)
                      ||||+|+..|+.++++.|++.    |+               +++..+..|.||||.|+..+...+  +..+++.+..+.
T Consensus       192 tpL~~A~~~g~~~iv~~Ll~~----g~---------------~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~  252 (434)
T PHA02874        192 SPLHNAAEYGDYACIKLLIDH----GN---------------HIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDI  252 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHhC----CC---------------CCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCC
Confidence            999999999999988877663    32               345567889999999998876433  333467788889


Q ss_pred             CCCCccccccccC-CCCCCCCCCccccccccccccccccceee
Q 004911          224 FNDVSFGTGAEKR-EYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       224 ~g~TpLh~Aa~~g-~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      .|.||||+|+..+ ..+++..|+..|++++..|..|.++++++
T Consensus       253 ~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A  295 (434)
T PHA02874        253 DGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTA  295 (434)
T ss_pred             CCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            9999999999865 67899999999999999999999999886

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=1.2e-27  Score=269.97  Aligned_cols=235  Identities=23%  Similarity=0.265  Sum_probs=203.7

Q ss_pred             cccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccc--------------------cc-----cccccC
Q 004911           11 NTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVG--------------------LW-----YGRVNG   65 (724)
Q Consensus        11 ~~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~g--------------------l~-----~a~~~g   65 (724)
                      .+.+.++|++..|+.++||||+||..++.|+.+.||+ .|+++-..+                    +.     |.+..+
T Consensus       139 ~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~-~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~  217 (929)
T KOG0510|consen  139 LLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELIN-KGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTH  217 (929)
T ss_pred             HHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHh-cCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcc
Confidence            3455679999999999999999999999998888888 787775543                    11     335566


Q ss_pred             CcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC---------------cccccCCCCCcHHHHHHhCCCCCHHHHHHHH
Q 004911           66 SKQMVSEHRTPLMVAATYGSVDVLKLILLHSSAD---------------VNVSCGSDRTTALHCAASGGSANVVDVVRLL  130 (724)
Q Consensus        66 ~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD---------------VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklL  130 (724)
                      .+-.+.+|.||||.|+..|++++++.+|+. |+.               ||.. |.+|.||||+||+.|+   ++.|+.|
T Consensus       218 in~~~n~~~~pLhlAve~g~~e~lk~~L~n-~~~~a~~~~~~~~q~kelv~~~-d~dg~tpLH~a~r~G~---~~svd~L  292 (929)
T KOG0510|consen  218 INFDNNEKATPLHLAVEGGDIEMLKMCLQN-GKKIADVQLDAMQQEKELVNDE-DNDGCTPLHYAARQGG---PESVDNL  292 (929)
T ss_pred             cccccCCCCcchhhhhhcCCHHHHHHHHhC-ccccchhhhHHHHHHHHHhhcc-cccCCchHHHHHHcCC---hhHHHHH
Confidence            666778999999999999999999999998 443               3334 8999999999999999   9999999


Q ss_pred             HHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCc
Q 004911          131 LSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPP  210 (724)
Q Consensus       131 Le~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~e  210 (724)
                      |..||+++.+++++.||||.|+..|+.++++.|++.   .+              ...++..|-.|.||||+|+.+|+..
T Consensus       293 l~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~---~~--------------~rllne~D~~g~tpLHlaa~~gH~~  355 (929)
T KOG0510|consen  293 LGFGASINSKNKDEESPLHFAAIYGRINTVERLLQE---SD--------------TRLLNESDLHGMTPLHLAAKSGHDR  355 (929)
T ss_pred             HHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhC---cC--------------ccccccccccCCCchhhhhhcCHHH
Confidence            999999999999999999999999999999988882   11              1156778999999999999999999


Q ss_pred             hhhhhcCCCcc-------ccCCCCccccccccCCCCCCCCCCccccccccccccccccceeeccC
Q 004911          211 SPSRLVSSPMA-------LKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRPCS  268 (724)
Q Consensus       211 iVe~Lad~~a~-------~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~pCs  268 (724)
                      +++.|++.++.       |.+|.||||.|+..|+..++..|+..|++|...++.++..|+.++|.
T Consensus       356 v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~~~~~~  420 (929)
T KOG0510|consen  356 VVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFDTRPDR  420 (929)
T ss_pred             HHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccccccccccc
Confidence            98888876633       66899999999999999999999999999999999999999987665

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=5.3e-27  Score=261.07  Aligned_cols=216  Identities=18%  Similarity=0.176  Sum_probs=184.0

Q ss_pred             cccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHH
Q 004911           11 NTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLK   90 (724)
Q Consensus        11 ~~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVk   90 (724)
                      ...+.+++++..+.+|.||||+|+..|+.++|++|++ .|++++..             +.++.||||+|+..|+.++|+
T Consensus        20 ~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~-------------~~~~~t~L~~A~~~g~~~~v~   85 (413)
T PHA02875         20 RLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMK-HGAIPDVK-------------YPDIESELHDAVEEGDVKAVE   85 (413)
T ss_pred             HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCcccc-------------CCCcccHHHHHHHCCCHHHHH
Confidence            3345688888999999999999999999999999999 78877765             467899999999999999999


Q ss_pred             HHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcC
Q 004911           91 LILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGS  170 (724)
Q Consensus        91 lLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~  170 (724)
                      +|++. |++++...+.+|.||||+|+..|+   .++|++|+++|++++..+..|.||||+|+..|+.++++.|++.    
T Consensus        86 ~Ll~~-~~~~~~~~~~~g~tpL~~A~~~~~---~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~----  157 (413)
T PHA02875         86 ELLDL-GKFADDVFYKDGMTPLHLATILKK---LDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH----  157 (413)
T ss_pred             HHHHc-CCcccccccCCCCCHHHHHHHhCC---HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc----
Confidence            99999 887765547789999999999999   9999999999999999999999999999999999988877763    


Q ss_pred             CCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcC----CCccccCC-CCccccccccCCCCCCCCCC
Q 004911          171 KNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS----SPMALKFN-DVSFGTGAEKREYPIDPSLP  245 (724)
Q Consensus       171 ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad----~~a~~~~g-~TpLh~Aa~~g~~~i~~~L~  245 (724)
                      |+               +++..|..|.||||+|+..|+.++++.|++    .+..+..| .|++|+|+..++.+++..|+
T Consensus       158 g~---------------~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll  222 (413)
T PHA02875        158 KA---------------CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFI  222 (413)
T ss_pred             CC---------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHH
Confidence            32               456778999999999999999999666654    44555565 47899999999999999999


Q ss_pred             ccccccccc---cccccccce
Q 004911          246 DIKNSIYAT---DEFRMFSFK  263 (724)
Q Consensus       246 d~ga~i~~~---D~~g~~~fk  263 (724)
                      +.|++++..   +..+.+.++
T Consensus       223 ~~gad~n~~~~~~~~~~t~l~  243 (413)
T PHA02875        223 KRGADCNIMFMIEGEECTILD  243 (413)
T ss_pred             HCCcCcchHhhcCCCchHHHH
Confidence            999998754   333444443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.94  E-value=5.2e-27  Score=266.47  Aligned_cols=204  Identities=17%  Similarity=0.183  Sum_probs=174.7

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHH--------------
Q 004911           22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVD--------------   87 (724)
Q Consensus        22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~e--------------   87 (724)
                      ....++||||.||..|++++|+.||+ .|+++|..             |.+|+||||+||..|+.+              
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~-~gadvn~~-------------d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~   98 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLT-RGHNVNQP-------------DHRDLTPLHIICKEPNKLGMKEMIRSINKCSV   98 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHCccHhHHHHHHHHHhcccc
Confidence            34568899999999999999999999 79999887             588999999998765532              


Q ss_pred             --------------------------------------------------HHHHHHhcCCCCcccccCCC-CCcHHHHHH
Q 004911           88 --------------------------------------------------VLKLILLHSSADVNVSCGSD-RTTALHCAA  116 (724)
Q Consensus        88 --------------------------------------------------vVklLLe~~GADVN~~~d~~-G~TPLH~Aa  116 (724)
                                                                        +|++|+++ |+|+|.. +.. |.||||+|+
T Consensus        99 ~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~-gadin~~-~~~~g~tpLh~A~  176 (477)
T PHA02878         99 FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSY-GADINMK-DRHKGNTALHYAT  176 (477)
T ss_pred             ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHc-CCCCCcc-CCCCCCCHHHHHH
Confidence                                                              66777777 8999998 777 999999999


Q ss_pred             hCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCC
Q 004911          117 SGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDY  196 (724)
Q Consensus       117 ~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G  196 (724)
                      ..|+   .++|++||++|++++..|..|.||||+|+..|+.++++.|++    .|+               +++..|..|
T Consensus       177 ~~~~---~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~----~ga---------------~in~~d~~g  234 (477)
T PHA02878        177 ENKD---QRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE----NGA---------------STDARDKCG  234 (477)
T ss_pred             hCCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH----cCC---------------CCCCCCCCC
Confidence            9999   999999999999999999999999999999999888887765    342               566788999


Q ss_pred             CChhchhHhc-CCCchhhhhc----CCCcccc-CCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          197 SSPLLTASAS-GSPPSPSRLV----SSPMALK-FNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       197 ~TPLh~Aa~~-G~~eiVe~La----d~~a~~~-~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      .||||+|+.. ++.++++.|+    +++..+. .|.||||+|  .+..+++..|++.|++++..|..|.++++.+
T Consensus       235 ~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A  307 (477)
T PHA02878        235 NTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSA  307 (477)
T ss_pred             CCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            9999999976 6778765554    5555554 699999999  4567788999999999999999999999886

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=1.3e-26  Score=257.87  Aligned_cols=183  Identities=25%  Similarity=0.280  Sum_probs=162.7

Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911           16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH   95 (724)
Q Consensus        16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~   95 (724)
                      +.+++..|.+|.|+||.||.+++++++|+||+ +|++||..+            ..-+.||||+||++|++.+|++||++
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~-~gadvn~~g------------G~l~stPLHWAar~G~~~vv~lLlqh  134 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLIS-HGADVNAIG------------GVLGSTPLHWAARNGHISVVDLLLQH  134 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHH-cCCCccccC------------CCCCCCcchHHHHcCcHHHHHHHHHc
Confidence            56688899999999999999999999999999 899999986            46789999999999999999999999


Q ss_pred             CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCch
Q 004911           96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV  175 (724)
Q Consensus        96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~  175 (724)
                       |||++.+ |..|.||||+||..|+   +-+|-+||.+|+|+|.+|.+|+||||+|+..|....+..|++.    ++   
T Consensus       135 -GAdpt~~-D~~G~~~lHla~~~~~---~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f----~a---  202 (600)
T KOG0509|consen  135 -GADPTLK-DKQGLTPLHLAAQFGH---TALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKF----GA---  202 (600)
T ss_pred             -CCCCcee-cCCCCcHHHHHHHhCc---hHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHh----cc---
Confidence             9999999 9999999999999999   9999999999999999999999999999999997766666664    32   


Q ss_pred             hhhcccccccccccCCC-CCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCcccccccc
Q 004911          176 VVASGAEHNLTVSIGSS-NSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEK  235 (724)
Q Consensus       176 ~~aa~~~~~l~~~in~~-d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~  235 (724)
                                  .++.. |.+|+||||+|+..|+..++..++    +....+.+|.||+.+|.++
T Consensus       203 ------------~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  203 ------------SLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ------------cccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence                        23333 489999999999999999876433    4457777899999999877

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.94  E-value=9e-27  Score=263.68  Aligned_cols=213  Identities=18%  Similarity=0.235  Sum_probs=152.1

Q ss_pred             cCCCCCCCCCCCchHHHH-----HHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHH--HcCCHH
Q 004911           15 MNNNSTAETEDSFTSMLE-----LASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAA--TYGSVD   87 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~-----AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA--~~G~~e   87 (724)
                      .+++++..+.++.||||.     |+..|+.++++.|++ .|++++..             +..|.||||+|+  ..|+.+
T Consensus        57 ~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~-~ga~i~~~-------------d~~g~tpL~~A~~~~~~~~~  122 (480)
T PHA03100         57 NGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLE-YGANVNAP-------------DNNGITPLLYAISKKSNSYS  122 (480)
T ss_pred             cCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHH-CCCCCCCC-------------CCCCCchhhHHHhcccChHH
Confidence            344455555555555555     555555555555555 45555443             577888888888  888888


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcHHHHHHhCC--CCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 004911           88 VLKLILLHSSADVNVSCGSDRTTALHCAASGG--SANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE  165 (724)
Q Consensus        88 vVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G--~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe  165 (724)
                      +|++|+++ |++++.. +..|.||||+|+..|  +   .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++
T Consensus       123 iv~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~---~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~  197 (480)
T PHA03100        123 IVEYLLDN-GANVNIK-NSDGENLLHLYLESNKID---LKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLD  197 (480)
T ss_pred             HHHHHHHc-CCCCCcc-CCCCCcHHHHHHHcCCCh---HHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            88888887 8888887 788888888888888  7   888888888888888888888888888888888777776665


Q ss_pred             HHHcCCCCchhhhcccccccccccCCCCCCC------CChhchhHhcCC--Cchhhhh----cCCCccccCCCCcccccc
Q 004911          166 EVFGSKNSSVVVASGAEHNLTVSIGSSNSDY------SSPLLTASASGS--PPSPSRL----VSSPMALKFNDVSFGTGA  233 (724)
Q Consensus       166 ~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G------~TPLh~Aa~~G~--~eiVe~L----ad~~a~~~~g~TpLh~Aa  233 (724)
                      .    |+               +++..+..|      .||||.|+..|+  .++++.|    ++.+..+..|.||||+|+
T Consensus       198 ~----ga---------------~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~  258 (480)
T PHA03100        198 N----GA---------------DINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAV  258 (480)
T ss_pred             c----CC---------------CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3    32               233445555      677777777777  6664443    444566777778888887


Q ss_pred             ccCCCCCCCCCCccccccccccccccccceee
Q 004911          234 EKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       234 ~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      ..++.++++.|++.|++++..|..|.++++.+
T Consensus       259 ~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A  290 (480)
T PHA03100        259 YNNNPEFVKYLLDLGANPNLVNKYGDTPLHIA  290 (480)
T ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence            77777777777777777777777777777665

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=2.7e-26  Score=268.65  Aligned_cols=216  Identities=15%  Similarity=0.103  Sum_probs=168.0

Q ss_pred             cccCCCCCCCCCCCchHHHHHHHcCC--HHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHH----------
Q 004911           13 EDMNNNSTAETEDSFTSMLELASNND--VEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVA----------   80 (724)
Q Consensus        13 ~~m~~di~~~d~~g~TpLh~AA~~G~--le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~A----------   80 (724)
                      .+.+++++..|.+|.||||+|+..|+  .++|+.||+ .|+++|..             +..|+||||+|          
T Consensus       199 Le~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe-~GADVN~k-------------D~~G~TPLh~Ai~~a~n~~~E  264 (764)
T PHA02716        199 CNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIE-LGGDMDMK-------------CVNGMSPIMTYIINIDNINPE  264 (764)
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHhhhccCHH
Confidence            34678888888899999999999885  488999998 78888876             57899999865          


Q ss_pred             ---------------------------HHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHh--CCCCCHHHHHHHHH
Q 004911           81 ---------------------------ATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAAS--GGSANVVDVVRLLL  131 (724)
Q Consensus        81 ---------------------------A~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~--~G~~~~~eiVklLL  131 (724)
                                                 |..|+.++|++||++ |+++|.+ |..|+||||+|+.  .++   .++|++|+
T Consensus       265 IvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~-GAdIN~k-D~~G~TPLH~Aaa~~~~~---~eIVklLL  339 (764)
T PHA02716        265 ITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP-GVKLHYK-DSAGRTCLHQYILRHNIS---TDIIKLLH  339 (764)
T ss_pred             HHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC-CCceecc-CCCCCCHHHHHHHHhCCC---chHHHHHH
Confidence                                       456889999999999 9999999 9999999999875  457   89999999


Q ss_pred             HCCCCCCCCCCCCCcHHHHHhc--------------CCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCC
Q 004911          132 SAGADPDCVDANGHHPIDVIVL--------------PPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYS  197 (724)
Q Consensus       132 e~GAd~n~~D~~G~TPLhlAa~--------------~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~  197 (724)
                      ++|++++.+|..|+||||+|+.              .++.++++.|++    .|+               +++..|..|.
T Consensus       340 e~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~----~GA---------------DIn~kn~~G~  400 (764)
T PHA02716        340 EYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLIS----LGA---------------DITAVNCLGY  400 (764)
T ss_pred             HcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHH----CCC---------------CCCCcCCCCC
Confidence            9999999999999999999864              256666665555    453               4556677777


Q ss_pred             ChhchhH----hcCCCchhhhh----------------------------------------------------------
Q 004911          198 SPLLTAS----ASGSPPSPSRL----------------------------------------------------------  215 (724)
Q Consensus       198 TPLh~Aa----~~G~~eiVe~L----------------------------------------------------------  215 (724)
                      ||||.++    ..++.++++.|                                                          
T Consensus       401 TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~  480 (764)
T PHA02716        401 TPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVY  480 (764)
T ss_pred             ChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhh
Confidence            7777321    12222332222                                                          


Q ss_pred             -------cCCCccccCCCCccccccccCCCCCC-----CCCCccccccccccccccccceeec
Q 004911          216 -------VSSPMALKFNDVSFGTGAEKREYPID-----PSLPDIKNSIYATDEFRMFSFKIRP  266 (724)
Q Consensus       216 -------ad~~a~~~~g~TpLh~Aa~~g~~~i~-----~~L~d~ga~i~~~D~~g~~~fkV~p  266 (724)
                             .+.++.+..|+||||+|+..++..++     +.|+..|++++..|+.|.++++.+.
T Consensus       481 ~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~  543 (764)
T PHA02716        481 HCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTM  543 (764)
T ss_pred             HHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHH
Confidence                   12344566788999999888887666     8888889999999999988888763

>PHA02946 ankyin-like protein; Provisional

Probab=99.93  E-value=2.6e-26  Score=258.73  Aligned_cols=199  Identities=15%  Similarity=0.146  Sum_probs=138.7

Q ss_pred             ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcC--CHHHHHH
Q 004911           14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYG--SVDVLKL   91 (724)
Q Consensus        14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G--~~evVkl   91 (724)
                      ..+++++..|.+|.||||+||..|+.++|+.||+ .|+++|..             |.+|+||||+|+..+  ..+++++
T Consensus        60 ~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~-~GAdin~~-------------d~~g~TpLh~A~~~~~~~~e~v~l  125 (446)
T PHA02946         60 HRGYSPNETDDDGNYPLHIASKINNNRIVAMLLT-HGADPNAC-------------DKQHKTPLYYLSGTDDEVIERINL  125 (446)
T ss_pred             HCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCC-------------CCCCCCHHHHHHHcCCchHHHHHH
Confidence            4567777777778888888888888888888887 67777765             577788888777665  3677788


Q ss_pred             HHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCC--HHHHHHHHHHHHc
Q 004911           92 ILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK--LDSMRAILEEVFG  169 (724)
Q Consensus        92 LLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~--~eivk~LLe~Ll~  169 (724)
                      ||++ |+++|...+.+|.|||| ||..|+   .+++++|+++|++++.+|..|+||||+|+..++  .++++.|+    +
T Consensus       126 Ll~~-Gadin~~~d~~g~tpL~-aa~~~~---~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll----~  196 (446)
T PHA02946        126 LVQY-GAKINNSVDEEGCGPLL-ACTDPS---ERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMM----K  196 (446)
T ss_pred             HHHc-CCCcccccCCCCCcHHH-HHHCCC---hHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHH----H
Confidence            8877 78877533777788886 555566   778888888888888888888888877766433  34554443    3


Q ss_pred             CCCCchhhhcccccccccccCCCCCCCCChhchhHhcC--CCchhhh---hcCCCccccCCCCccccccccCCC-CCCCC
Q 004911          170 SKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASG--SPPSPSR---LVSSPMALKFNDVSFGTGAEKREY-PIDPS  243 (724)
Q Consensus       170 ~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G--~~eiVe~---Lad~~a~~~~g~TpLh~Aa~~g~~-~i~~~  243 (724)
                      .|+               +++..|.+|.||||+|+..+  +.++++.   +++.+.++..|.||||+|+..++. ++++.
T Consensus       197 ~Ga---------------din~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~~~~~~~~~~  261 (446)
T PHA02946        197 LGI---------------SPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTLSPAHLINK  261 (446)
T ss_pred             cCC---------------CCcccCCCCCCHHHHHHHcCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCChHHHHHH
Confidence            443               45566777888888888765  4444443   346677777788888888777663 55556


Q ss_pred             CCccccc
Q 004911          244 LPDIKNS  250 (724)
Q Consensus       244 L~d~ga~  250 (724)
                      |+..|+.
T Consensus       262 Ll~~g~~  268 (446)
T PHA02946        262 LLSTSNV  268 (446)
T ss_pred             HHhCCCC
Confidence            6666543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.93  E-value=6.6e-26  Score=254.41  Aligned_cols=211  Identities=19%  Similarity=0.269  Sum_probs=181.8

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL   94 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe   94 (724)
                      -+..++..+.+|.||||.|+..|+.++|++|++ .|++++..             +..|.||||+|+..|+.++|++|++
T Consensus        24 ~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~-~Ga~~n~~-------------~~~~~t~L~~A~~~~~~~iv~~Ll~   89 (434)
T PHA02874         24 KGNCINISVDETTTPLIDAIRSGDAKIVELFIK-HGADINHI-------------NTKIPHPLLTAIKIGAHDIIKLLID   89 (434)
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            345577888899999999999999999999999 89999876             4789999999999999999999988


Q ss_pred             cCC-----------------------CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 004911           95 HSS-----------------------ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVI  151 (724)
Q Consensus        95 ~~G-----------------------ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlA  151 (724)
                      + |                       +|++.. +..|.||||+|+..|+   .++|++|+++|++++.+|..|.||||+|
T Consensus        90 ~-g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~-~~~g~T~Lh~A~~~~~---~~~v~~Ll~~gad~n~~d~~g~tpLh~A  164 (434)
T PHA02874         90 N-GVDTSILPIPCIEKDMIKTILDCGIDVNIK-DAELKTFLHYAIKKGD---LESIKMLFEYGADVNIEDDNGCYPIHIA  164 (434)
T ss_pred             C-CCCCCcchhccCCHHHHHHHHHCcCCCCCC-CCCCccHHHHHHHCCC---HHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence            6 5                       456677 8899999999999999   9999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC----ccccCCCC
Q 004911          152 VLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP----MALKFNDV  227 (724)
Q Consensus       152 a~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~----a~~~~g~T  227 (724)
                      +..|+.++++.|++.    |+               +++..+..|.||||+|+..|+.+++++|++.+    ..+..|.|
T Consensus       165 ~~~~~~~iv~~Ll~~----g~---------------~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~T  225 (434)
T PHA02874        165 IKHNFFDIIKLLLEK----GA---------------YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFT  225 (434)
T ss_pred             HHCCcHHHHHHHHHC----CC---------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC
Confidence            999999888877663    32               45567889999999999999999977776544    66778999


Q ss_pred             ccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          228 SFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       228 pLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      |||.|+..+. .++..|+ .+++++..|..|.++++.+
T Consensus       226 pL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A  261 (434)
T PHA02874        226 PLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHA  261 (434)
T ss_pred             HHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHH
Confidence            9999998765 3444444 5788899999999998876

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.93  E-value=3.1e-26  Score=259.35  Aligned_cols=207  Identities=21%  Similarity=0.244  Sum_probs=186.7

Q ss_pred             ccccCCCCCCCCCCCchHHHHHH--HcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcC--CHH
Q 004911           12 TEDMNNNSTAETEDSFTSMLELA--SNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYG--SVD   87 (724)
Q Consensus        12 ~~~m~~di~~~d~~g~TpLh~AA--~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G--~~e   87 (724)
                      ..+.+++++..+..|.||||+|+  ..|+.++|+.|++ .|++++..             +..|.||||+|+..|  +.+
T Consensus        92 Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~  157 (480)
T PHA03100         92 LLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLD-NGANVNIK-------------NSDGENLLHLYLESNKIDLK  157 (480)
T ss_pred             HHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHH-cCCCCCcc-------------CCCCCcHHHHHHHcCCChHH
Confidence            34567888899999999999999  9999999999999 88998876             588999999999999  999


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCC------CcHHHHHhcCCC--HHH
Q 004911           88 VLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG------HHPIDVIVLPPK--LDS  159 (724)
Q Consensus        88 vVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G------~TPLhlAa~~G~--~ei  159 (724)
                      ++++|+++ |+++|.. +..|.||||+|+..|+   .+++++|+++|++++..+..|      .||||+|+..|+  .++
T Consensus       158 iv~~Ll~~-g~din~~-d~~g~tpL~~A~~~~~---~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~i  232 (480)
T PHA03100        158 ILKLLIDK-GVDINAK-NRYGYTPLHIAVEKGN---IDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEV  232 (480)
T ss_pred             HHHHHHHC-CCCcccc-cCCCCCHHHHHHHhCC---HHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHH
Confidence            99999999 9999999 8899999999999999   999999999999999999999      999999999999  888


Q ss_pred             HHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCcccccccc
Q 004911          160 MRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEK  235 (724)
Q Consensus       160 vk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~  235 (724)
                      ++.|++    .|+               +++..|..|.||||+|+..|+.++++.|    ++.+..+..|.||+++|+..
T Consensus       233 v~~Ll~----~g~---------------din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~  293 (480)
T PHA03100        233 VNYLLS----YGV---------------PINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILN  293 (480)
T ss_pred             HHHHHH----cCC---------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHh
Confidence            887766    342               5667789999999999999999986555    46667888999999999999


Q ss_pred             CCCCCCCCCCccccccccccc
Q 004911          236 REYPIDPSLPDIKNSIYATDE  256 (724)
Q Consensus       236 g~~~i~~~L~d~ga~i~~~D~  256 (724)
                      ++.+++..|++.|+++...+.
T Consensus       294 ~~~~iv~~Ll~~g~~i~~i~~  314 (480)
T PHA03100        294 NNKEIFKLLLNNGPSIKTIIE  314 (480)
T ss_pred             CCHHHHHHHHhcCCCHHHHHH
Confidence            999999999999998876553

>PHA02798 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.4e-26  Score=260.72  Aligned_cols=228  Identities=14%  Similarity=0.163  Sum_probs=177.0

Q ss_pred             cccccCCCCCCCCCCCchHHHHHHHc-----CCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcC-
Q 004911           11 NTEDMNNNSTAETEDSFTSMLELASN-----NDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYG-   84 (724)
Q Consensus        11 ~~~~m~~di~~~d~~g~TpLh~AA~~-----G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G-   84 (724)
                      ...+.+++++..|..|.||||.|+.+     +..++++.|++ .|+++|..             +.+|+||||+|+..| 
T Consensus        56 ~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~-~GadiN~~-------------d~~G~TpLh~a~~~~~  121 (489)
T PHA02798         56 LFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIE-NGADINKK-------------NSDGETPLYCLLSNGY  121 (489)
T ss_pred             HHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHH-CCCCCCCC-------------CCCcCcHHHHHHHcCC
Confidence            44567888999999999999998764     67899999999 89999987             578999999999876 


Q ss_pred             --CHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHhcC----CCH
Q 004911           85 --SVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPIDVIVLP----PKL  157 (724)
Q Consensus        85 --~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLhlAa~~----G~~  157 (724)
                        +.+++++|+++ |+|+|.. |.+|.||||+|+..|+....+++++||++|+|++..+ ..|.||||.++..    ++.
T Consensus       122 ~~~~~iv~~Ll~~-Gadvn~~-d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~  199 (489)
T PHA02798        122 INNLEILLFMIEN-GADTTLL-DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDA  199 (489)
T ss_pred             cChHHHHHHHHHc-CCCcccc-CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCH
Confidence              78999999998 9999998 9999999999998875333899999999999999875 5788999988754    466


Q ss_pred             HHHHHHHHHHHcCCC------Cchh--h-----hccc-ccc------cccccCCCCCCCCChhchhHhcCCCchhh----
Q 004911          158 DSMRAILEEVFGSKN------SSVV--V-----ASGA-EHN------LTVSIGSSNSDYSSPLLTASASGSPPSPS----  213 (724)
Q Consensus       158 eivk~LLe~Ll~~ga------~~~~--~-----aa~~-~~~------l~~~in~~d~~G~TPLh~Aa~~G~~eiVe----  213 (724)
                      ++++.|++.+.....      ...+  .     .... ...      ...++|.+|..|.||||+|+..|+.++++    
T Consensus       200 ~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~  279 (489)
T PHA02798        200 DILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQ  279 (489)
T ss_pred             HHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHH
Confidence            777666654322111      0000  0     0000 000      01367888999999999999999998844    


Q ss_pred             hhcCCCccccCCCCccccccccCCCCCCCCCCccccccccc
Q 004911          214 RLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYAT  254 (724)
Q Consensus       214 ~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~  254 (724)
                      .|+++++.+..|.|||+.|+..++..++..|++.+.++...
T Consensus       280 ~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i  320 (489)
T PHA02798        280 LGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKNTI  320 (489)
T ss_pred             cCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHHH
Confidence            45677788889999999999999999999998888777643

>PHA02946 ankyin-like protein; Provisional

Probab=99.93  E-value=3.7e-26  Score=257.52  Aligned_cols=244  Identities=11%  Similarity=0.071  Sum_probs=182.8

Q ss_pred             cccccCCCCCCCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCcccc-c------c-------------ccccccCCcc
Q 004911           11 NTEDMNNNSTAETEDSFTSMLELASNN--DVEGFKRMLERDPSSVDEV-G------L-------------WYGRVNGSKQ   68 (724)
Q Consensus        11 ~~~~m~~di~~~d~~g~TpLh~AA~~G--~le~Vk~LLe~~gadIn~~-g------l-------------~~a~~~g~~~   68 (724)
                      ...+.+++++..|.+|.||||+|+..+  .+++++.||+ .|++++.. +      +             +...+...+.
T Consensus        90 lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~-~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~  168 (446)
T PHA02946         90 MLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQ-YGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARI  168 (446)
T ss_pred             HHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHH-cCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccc
Confidence            344568899999999999999998876  4899999998 88888742 1      1             2223344556


Q ss_pred             cCCCCChHHHHHHHcC--CHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCC--CCCHHHHHHHHHHCCCCCCCCCCCC
Q 004911           69 MVSEHRTPLMVAATYG--SVDVLKLILLHSSADVNVSCGSDRTTALHCAASGG--SANVVDVVRLLLSAGADPDCVDANG  144 (724)
Q Consensus        69 ~d~~G~TPLH~AA~~G--~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G--~~~~~eiVklLLe~GAd~n~~D~~G  144 (724)
                      .|..|+||||+|+..+  +.+++++|+++ |+|+|.+ |.+|.||||+|+..|  +   .+++++|++ |+++|.+|..|
T Consensus       169 ~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~-Gadin~~-d~~G~TpLH~Aa~~~~~~---~~iv~lLl~-gadin~~d~~G  242 (446)
T PHA02946        169 VDKFGKNHIHRHLMSDNPKASTISWMMKL-GISPSKP-DHDGNTPLHIVCSKTVKN---VDIINLLLP-STDVNKQNKFG  242 (446)
T ss_pred             cCCCCCCHHHHHHHhcCCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCCCc---HHHHHHHHc-CCCCCCCCCCC
Confidence            6788999999988754  46899999998 9999998 899999999999876  5   889998885 89999999999


Q ss_pred             CcHHHHHhcCCC-HHHHHHHHHHHHcCCCCchhhhccccc-ccccccCCC-CCCCCChhchhHhcCCCchhhhhcCCCcc
Q 004911          145 HHPIDVIVLPPK-LDSMRAILEEVFGSKNSSVVVASGAEH-NLTVSIGSS-NSDYSSPLLTASASGSPPSPSRLVSSPMA  221 (724)
Q Consensus       145 ~TPLhlAa~~G~-~eivk~LLe~Ll~~ga~~~~~aa~~~~-~l~~~in~~-d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~  221 (724)
                      .||||+|+..++ .++++.|+.............+...+. .....++.. +..|.||||+|+..|+.+++++|++.+. 
T Consensus       243 ~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~-  321 (446)
T PHA02946        243 DSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI-  321 (446)
T ss_pred             CCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC-
Confidence            999999998877 355555544321110011111111110 001112222 3467899999999999999999999764 


Q ss_pred             ccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          222 LKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       222 ~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                        .+.||||+|+..++.+++..|+..|++++.. ..|.++++.+
T Consensus       322 --~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a  362 (446)
T PHA02946        322 --ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSEC  362 (446)
T ss_pred             --ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHH
Confidence              6799999999999999999999999999985 5788887765

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=8.8e-26  Score=254.83  Aligned_cols=227  Identities=19%  Similarity=0.157  Sum_probs=181.2

Q ss_pred             cccccCCCCCCCCCCCchHHHHHHHcC-CHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHH--HcCCHH
Q 004911           11 NTEDMNNNSTAETEDSFTSMLELASNN-DVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAA--TYGSVD   87 (724)
Q Consensus        11 ~~~~m~~di~~~d~~g~TpLh~AA~~G-~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA--~~G~~e   87 (724)
                      ...+.+++++..+..|.||||+|+..| +.++++.|++ .|++++..             +..|+||||+|+  ..++.+
T Consensus        68 ~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~-~ga~in~~-------------~~~g~tpLh~a~~~~~~~~~  133 (471)
T PHA03095         68 LLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIK-AGADVNAK-------------DKVGRTPLHVYLSGFNINPK  133 (471)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHhhCCcCCHH
Confidence            345678899999999999999999999 5999999999 89999887             578999999999  556889


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcC--CCHHHHHHHHH
Q 004911           88 VLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLP--PKLDSMRAILE  165 (724)
Q Consensus        88 vVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~--G~~eivk~LLe  165 (724)
                      ++++||++ |++++.. +..|.||||+|+..+.. ..+++++|+++|++++..|..|+||||+|+..  +..++++.|++
T Consensus       134 iv~~Ll~~-gad~~~~-d~~g~tpL~~a~~~~~~-~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~  210 (471)
T PHA03095        134 VIRLLLRK-GADVNAL-DLYGMTPLAVLLKSRNA-NVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIR  210 (471)
T ss_pred             HHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCCC-CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHH
Confidence            99999998 9999998 89999999998876631 17899999999999988888999999988863  56666665554


Q ss_pred             HHHcC------CCCchhhhcccccc----------cccccCCCCCCCCChhchhHhcCCCchhhh----hcCCCccccCC
Q 004911          166 EVFGS------KNSSVVVASGAEHN----------LTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKFN  225 (724)
Q Consensus       166 ~Ll~~------ga~~~~~aa~~~~~----------l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~----Lad~~a~~~~g  225 (724)
                      .+...      |.++.+.++.....          ...+++..|..|.||||+|+..|+.+++++    +++.++.+..|
T Consensus       211 ~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g  290 (471)
T PHA03095        211 AGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDG  290 (471)
T ss_pred             cCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            33221      22333333322210          113678889999999999999999988555    55777889999


Q ss_pred             CCccccccccCCCCCCCCCCccccccccc
Q 004911          226 DVSFGTGAEKREYPIDPSLPDIKNSIYAT  254 (724)
Q Consensus       226 ~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~  254 (724)
                      .||||+|+..++.+++..|++.+.++...
T Consensus       291 ~tpl~~A~~~~~~~~v~~LL~~~~~~~~~  319 (471)
T PHA03095        291 NTPLSLMVRNNNGRAVRAALAKNPSAETV  319 (471)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCCHHHH
Confidence            99999999999999999999988777543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2.3e-25  Score=248.03  Aligned_cols=196  Identities=20%  Similarity=0.207  Sum_probs=175.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004911           26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG  105 (724)
Q Consensus        26 g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d  105 (724)
                      ..++||.|+..|++++|++||+ .|++++..             +.+|.||||+|+..|+.++|++|+++ |++++.. +
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~-~g~~~n~~-------------~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~-~   65 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLD-IGINPNFE-------------IYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVK-Y   65 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHH-CCCCCCcc-------------CCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccc-C
Confidence            4689999999999999999999 79998876             47899999999999999999999999 9999988 8


Q ss_pred             CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCC-CCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccc
Q 004911          106 SDRTTALHCAASGGSANVVDVVRLLLSAGADPD-CVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHN  184 (724)
Q Consensus       106 ~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n-~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~  184 (724)
                      .++.||||+|+..|+   .++|++|++.|++++ ..+..|.||||+|+..|+.++++.|++    .|+            
T Consensus        66 ~~~~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~----~ga------------  126 (413)
T PHA02875         66 PDIESELHDAVEEGD---VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA----RGA------------  126 (413)
T ss_pred             CCcccHHHHHHHCCC---HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHh----CCC------------
Confidence            899999999999999   999999999998774 457789999999999999988887766    343            


Q ss_pred             cccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCcccccccccccccc
Q 004911          185 LTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRM  259 (724)
Q Consensus       185 l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~  259 (724)
                         +++..+..|.||||+|+..|+.++++.++    +.+..+..|.||||+|+..|+.++++.|++.|++++..+..+.
T Consensus       127 ---d~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~  202 (413)
T PHA02875        127 ---DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGC  202 (413)
T ss_pred             ---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCC
Confidence               45567888999999999999999966665    5557788999999999999999999999999999988877664

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.1e-25  Score=263.97  Aligned_cols=236  Identities=15%  Similarity=0.136  Sum_probs=133.4

Q ss_pred             cccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHH
Q 004911           11 NTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLK   90 (724)
Q Consensus        11 ~~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVk   90 (724)
                      ...+.+++++..|..|.||||+||..|+.++|++||+ .|++++...             .+|.||||+|+..|+.++++
T Consensus       163 ~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~-~Gad~n~~~-------------~~g~t~L~~A~~~~~~~ivk  228 (682)
T PHA02876        163 MLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLS-YGADVNIIA-------------LDDLSVLECAVDSKNIDTIK  228 (682)
T ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCcCccC-------------CCCCCHHHHHHHcCCHHHHH
Confidence            3455788999999999999999999999999999999 888887652             33444444444444333332


Q ss_pred             -----------------------------HHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHH-HHHHHHHHCCCCCCCC
Q 004911           91 -----------------------------LILLHSSADVNVSCGSDRTTALHCAASGGSANVV-DVVRLLLSAGADPDCV  140 (724)
Q Consensus        91 -----------------------------lLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~-eiVklLLe~GAd~n~~  140 (724)
                                                   +|++. |+++|.. +..|.||||+|+..|+   . +++++|++.|++++..
T Consensus       229 ~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~-g~~vn~~-d~~g~TpLh~Aa~~~~---~~~iv~lLl~~gadin~~  303 (682)
T PHA02876        229 AIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDA-GFSVNSI-DDCKNTPLHHASQAPS---LSRLVPKLLERGADVNAK  303 (682)
T ss_pred             HHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHhCCC---HHHHHHHHHHCCCCCCCc
Confidence                                         22333 5555554 4555555555555554   3 3555555555555555


Q ss_pred             CCCCCcHHHHHhcCC-CHHHHHHHHHHHHcC------CCCchhhhcccccc---------cccccCCCCCCCCChhchhH
Q 004911          141 DANGHHPIDVIVLPP-KLDSMRAILEEVFGS------KNSSVVVASGAEHN---------LTVSIGSSNSDYSSPLLTAS  204 (724)
Q Consensus       141 D~~G~TPLhlAa~~G-~~eivk~LLe~Ll~~------ga~~~~~aa~~~~~---------l~~~in~~d~~G~TPLh~Aa  204 (724)
                      |..|.||||+|+..| ..++++.|+......      |.++.+.++.....         ...+++.+|..|.||||+|+
T Consensus       304 d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa  383 (682)
T PHA02876        304 NIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAA  383 (682)
T ss_pred             CCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHH
Confidence            555555555555554 244443333321100      00111111000000         00145556666777777777


Q ss_pred             hcCCCchhhhhc----CCCccccCCCCccccccccCC-CCCCCCCCccccccccccccccccceee
Q 004911          205 ASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKRE-YPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       205 ~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~-~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      ..|+.++++.|+    +.+..+..|.||||+|+..+. ..+++.|++.|++++..|..|.++++.+
T Consensus       384 ~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~A  449 (682)
T PHA02876        384 VRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA  449 (682)
T ss_pred             HcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHH
Confidence            777766644443    344455566677777665443 3445566666777777777777766665

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.92  E-value=1.7e-25  Score=255.28  Aligned_cols=227  Identities=14%  Similarity=0.137  Sum_probs=134.4

Q ss_pred             ccccCCCCCCCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCccccc-----ccc--------------------cccc
Q 004911           12 TEDMNNNSTAETEDSFTSMLELASNN--DVEGFKRMLERDPSSVDEVG-----LWY--------------------GRVN   64 (724)
Q Consensus        12 ~~~m~~di~~~d~~g~TpLh~AA~~G--~le~Vk~LLe~~gadIn~~g-----l~~--------------------a~~~   64 (724)
                      ..+.++++|.. .+|.|+||.++..+  +.++|+.||+ .|+++|..+     ++.                    ..+.
T Consensus        22 LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~-~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Ga   99 (494)
T PHA02989         22 LLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLID-NGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGA   99 (494)
T ss_pred             HHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHH-cCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHHCCC
Confidence            34567777777 56788887665543  6788888888 788888643     111                    1222


Q ss_pred             CCcccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCc-ccccCCCCCcHHHHHHhC--CCCCHHHHHHHHHHCCCCCC
Q 004911           65 GSKQMVSEHRTPLMVAATY---GSVDVLKLILLHSSADV-NVSCGSDRTTALHCAASG--GSANVVDVVRLLLSAGADPD  138 (724)
Q Consensus        65 g~~~~d~~G~TPLH~AA~~---G~~evVklLLe~~GADV-N~~~d~~G~TPLH~Aa~~--G~~~~~eiVklLLe~GAd~n  138 (724)
                      +.+..+.+|.||||.|+..   |+.++|++||++ |||+ +.. +..|+||||+|+..  ++   .++|++||++|+|++
T Consensus       100 din~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~-Gadin~~~-d~~g~tpLh~a~~~~~~~---~~iv~~Ll~~Gadi~  174 (494)
T PHA02989        100 DINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSK-GINVNDVK-NSRGYNLLHMYLESFSVK---KDVIKILLSFGVNLF  174 (494)
T ss_pred             CCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHC-CCCccccc-CCCCCCHHHHHHHhccCC---HHHHHHHHHcCCCcc
Confidence            3334456677777766544   456777777776 7777 555 66777777776543  34   677777777777776


Q ss_pred             C-CCCCCCcHHHHHhcCC----CHHHHHHHHHHHHcCCCCchhhhcccccc-----------------------cccccC
Q 004911          139 C-VDANGHHPIDVIVLPP----KLDSMRAILEEVFGSKNSSVVVASGAEHN-----------------------LTVSIG  190 (724)
Q Consensus       139 ~-~D~~G~TPLhlAa~~G----~~eivk~LLe~Ll~~ga~~~~~aa~~~~~-----------------------l~~~in  190 (724)
                      . .+..|.||||+|+..+    +.++++.|++.    |++......+....                       ...+++
T Consensus       175 ~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~----Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn  250 (494)
T PHA02989        175 EKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKK----GVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKIN  250 (494)
T ss_pred             ccccccCCChHHHHHhcccccccHHHHHHHHhC----CCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCC
Confidence            6 4666777777765543    55555554443    32111111000000                       012455


Q ss_pred             CCCCCCCChhchhHhcCCCchhh----hhcCCCccccCCCCccccccccCCCCCCCCCCcccc
Q 004911          191 SSNSDYSSPLLTASASGSPPSPS----RLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKN  249 (724)
Q Consensus       191 ~~d~~G~TPLh~Aa~~G~~eiVe----~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga  249 (724)
                      .+|..|.||||+|+..|+.++++    .|+++++.+..|.||||+|+..++.+++..|++.+.
T Consensus       251 ~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        251 KKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             CCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            66666777777777666666633    334555666666677777766666666666655543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.92  E-value=2.4e-25  Score=260.69  Aligned_cols=226  Identities=16%  Similarity=0.123  Sum_probs=174.3

Q ss_pred             cccccCCCCCCCCCCCchHHHHHH-------------------------------------HcCCHHHHHHHHhcCCCCc
Q 004911           11 NTEDMNNNSTAETEDSFTSMLELA-------------------------------------SNNDVEGFKRMLERDPSSV   53 (724)
Q Consensus        11 ~~~~m~~di~~~d~~g~TpLh~AA-------------------------------------~~G~le~Vk~LLe~~gadI   53 (724)
                      ...+.+++++..+..|.||||.|+                                     ..|++++|+.||+ .|+++
T Consensus       232 lLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe-~GAdI  310 (764)
T PHA02716        232 KIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ-PGVKL  310 (764)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh-CCCce
Confidence            345578999999999999999753                                     4466777777777 67777


Q ss_pred             cccccccccccCCcccCCCCChHHHHHHH--cCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHh--------------
Q 004911           54 DEVGLWYGRVNGSKQMVSEHRTPLMVAAT--YGSVDVLKLILLHSSADVNVSCGSDRTTALHCAAS--------------  117 (724)
Q Consensus        54 n~~gl~~a~~~g~~~~d~~G~TPLH~AA~--~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~--------------  117 (724)
                      +..             |..|+||||+|+.  +++.++|++||++ |+|+|.+ |..|+||||+|+.              
T Consensus       311 N~k-------------D~~G~TPLH~Aaa~~~~~~eIVklLLe~-GADIN~k-D~~G~TPLH~A~~~lav~~~ld~~~~~  375 (764)
T PHA02716        311 HYK-------------DSAGRTCLHQYILRHNISTDIIKLLHEY-GNDLNEP-DNIGNTVLHTYLSMLSVVNILDPETDN  375 (764)
T ss_pred             ecc-------------CCCCCCHHHHHHHHhCCCchHHHHHHHc-CCCCccC-CCCCCCHHHHHHHhhhhhccccccccc
Confidence            665             6899999999875  5689999999999 9999999 9999999999875              


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHH----hcCCCHHHHHHHHHHHH-------------c-CCCCch---h
Q 004911          118 GGSANVVDVVRLLLSAGADPDCVDANGHHPIDVI----VLPPKLDSMRAILEEVF-------------G-SKNSSV---V  176 (724)
Q Consensus       118 ~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlA----a~~G~~eivk~LLe~Ll-------------~-~ga~~~---~  176 (724)
                      .++   .++|++||++|||++.+|..|.||||.+    ...++.++++.|++...             . .+.+..   +
T Consensus       376 ~~~---~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh  452 (764)
T PHA02716        376 DIR---LDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHH  452 (764)
T ss_pred             cCh---HHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHH
Confidence            256   8999999999999999999999999942    23567788887776321             0 010110   0


Q ss_pred             hhcccc------------------c-------ccccccCCCCCCCCChhchhHhcCCCch---------hhhhcCCCccc
Q 004911          177 VASGAE------------------H-------NLTVSIGSSNSDYSSPLLTASASGSPPS---------PSRLVSSPMAL  222 (724)
Q Consensus       177 ~aa~~~------------------~-------~l~~~in~~d~~G~TPLh~Aa~~G~~ei---------Ve~Lad~~a~~  222 (724)
                      ..+...                  .       ....+++..|..|+||||+|+..|+.++         ++.|+++++++
T Consensus       453 ~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d  532 (764)
T PHA02716        453 IIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPT  532 (764)
T ss_pred             HHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccC
Confidence            000000                  0       0012457778999999999999988642         66677888999


Q ss_pred             cCCCCccccccccCCC-----CCCCCCCcccccccccc
Q 004911          223 KFNDVSFGTGAEKREY-----PIDPSLPDIKNSIYATD  255 (724)
Q Consensus       223 ~~g~TpLh~Aa~~g~~-----~i~~~L~d~ga~i~~~D  255 (724)
                      +.|.||||+|+.+|++     ++++.|++.|++++...
T Consensus       533 ~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~~  570 (764)
T PHA02716        533 KNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIVI  570 (764)
T ss_pred             CCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcchHH
Confidence            9999999999999987     88899999998887663

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.92  E-value=4e-25  Score=261.62  Aligned_cols=215  Identities=19%  Similarity=0.190  Sum_probs=189.0

Q ss_pred             cccCCCCCCCCCCCchHHHHHHHcCCH-HHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcC-CHHHHH
Q 004911           13 EDMNNNSTAETEDSFTSMLELASNNDV-EGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYG-SVDVLK   90 (724)
Q Consensus        13 ~~m~~di~~~d~~g~TpLh~AA~~G~l-e~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G-~~evVk   90 (724)
                      .+.+.+++..+..|.||||+|+..|++ ++++.|++ .|++++..             +.+|+||||+|+..| ..++++
T Consensus       260 l~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~-~gadin~~-------------d~~g~TpLh~Aa~~g~~~~~v~  325 (682)
T PHA02876        260 YDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLE-RGADVNAK-------------NIKGETPLYLMAKNGYDTENIR  325 (682)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHhCCCHHHHH
Confidence            345677888899999999999999997 57888888 89999876             588999999999999 699999


Q ss_pred             HHHhcCCCCcccccCCCCCcHHHHHHhCC-CCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHc
Q 004911           91 LILLHSSADVNVSCGSDRTTALHCAASGG-SANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFG  169 (724)
Q Consensus        91 lLLe~~GADVN~~~d~~G~TPLH~Aa~~G-~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~  169 (724)
                      +|+.. |+++|.. +..|.||||+|+..+ +   .+++++|++.|++++.+|..|.||||+|+..|+.++++.|++    
T Consensus       326 ~Ll~~-gadin~~-d~~g~TpLh~A~~~~~~---~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~----  396 (682)
T PHA02876        326 TLIML-GADVNAA-DRLYITPLHQASTLDRN---KDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLD----  396 (682)
T ss_pred             HHHHc-CCCCCCc-ccCCCcHHHHHHHhCCc---HHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH----
Confidence            99999 9999998 999999999999865 5   899999999999999999999999999999999998887776    


Q ss_pred             CCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCc-h----hhhhcCCCccccCCCCccccccccC-CCCCCCC
Q 004911          170 SKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPP-S----PSRLVSSPMALKFNDVSFGTGAEKR-EYPIDPS  243 (724)
Q Consensus       170 ~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~e-i----Ve~Lad~~a~~~~g~TpLh~Aa~~g-~~~i~~~  243 (724)
                      .|+               +++..+..|.||||+|+..++.. +    ++.+++.+.++..|.||||+|+..+ +.+++..
T Consensus       397 ~ga---------------d~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~l  461 (682)
T PHA02876        397 YGA---------------DIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEM  461 (682)
T ss_pred             CCC---------------CccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHH
Confidence            343               45566788999999999877643 3    5566788899999999999999876 6799999


Q ss_pred             CCccccccccccccccccceee
Q 004911          244 LPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       244 L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      |++.|++++..|..|.+++.++
T Consensus       462 Ll~~Gad~n~~d~~g~tpl~~a  483 (682)
T PHA02876        462 LLDNGADVNAINIQNQYPLLIA  483 (682)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999876

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.92  E-value=4.6e-25  Score=251.75  Aligned_cols=233  Identities=18%  Similarity=0.153  Sum_probs=163.6

Q ss_pred             HHHHHHH---cCCHHHHHHHHhcCCCCccccc-----c-ccccc---------------cCCcccCCCCChHHHHHHHcC
Q 004911           29 SMLELAS---NNDVEGFKRMLERDPSSVDEVG-----L-WYGRV---------------NGSKQMVSEHRTPLMVAATYG   84 (724)
Q Consensus        29 pLh~AA~---~G~le~Vk~LLe~~gadIn~~g-----l-~~a~~---------------~g~~~~d~~G~TPLH~AA~~G   84 (724)
                      +||.-+.   ..+.++|+.||+ .|+++|...     + ++...               .+.+.. ..+.||||.|+.++
T Consensus         3 ~l~~y~~~~~~~~~~~v~~LL~-~GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~-~~~~tpL~~a~~~~   80 (494)
T PHA02989          3 SLYEYILYSDTVDKNALEFLLR-TGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYK-GYIETPLCAVLRNR   80 (494)
T ss_pred             HHHHHHHcCCcCcHHHHHHHHH-cCCCcccccCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCC-CCCCCcHHHHHhcc
Confidence            4444433   579999999999 899999752     1 22211               112222 24688999887654


Q ss_pred             ------CHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHhc--CC
Q 004911           85 ------SVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADP-DCVDANGHHPIDVIVL--PP  155 (724)
Q Consensus        85 ------~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~-n~~D~~G~TPLhlAa~--~G  155 (724)
                            +.++|++||++ |||+|.. +..|.||||+|+..++.+..++|++||++|||+ +.+|..|+||||+|+.  .+
T Consensus        81 ~~~~~~~~~iv~~Ll~~-Gadin~~-d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~  158 (494)
T PHA02989         81 EITSNKIKKIVKLLLKF-GADINLK-TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSV  158 (494)
T ss_pred             CcchhhHHHHHHHHHHC-CCCCCCC-CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccC
Confidence                  46789999998 8999988 888999999887653322289999999999999 7888899999998875  35


Q ss_pred             CHHHHHHHHHHHHcCC-------CCchhhhcccc-----cc-------cccccCCCCCCCCChhchhHhcCC------Cc
Q 004911          156 KLDSMRAILEEVFGSK-------NSSVVVASGAE-----HN-------LTVSIGSSNSDYSSPLLTASASGS------PP  210 (724)
Q Consensus       156 ~~eivk~LLe~Ll~~g-------a~~~~~aa~~~-----~~-------l~~~in~~d~~G~TPLh~Aa~~G~------~e  210 (724)
                      +.++++.|++.+....       .++.+.+....     ..       ...+++..+..|.|+||.++..+.      .+
T Consensus       159 ~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~  238 (494)
T PHA02989        159 KKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFK  238 (494)
T ss_pred             CHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchH
Confidence            7777777766543211       11111111000     00       012455566667788877665432      22


Q ss_pred             h---hhhhcCCCccccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          211 S---PSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       211 i---Ve~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      +   +..+++.+.++..|.||||+|+..++.++++.|++.|++++..|..|.++++.+
T Consensus       239 il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A  296 (494)
T PHA02989        239 VLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYA  296 (494)
T ss_pred             HHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            2   334567788889999999999999999999999999999999999999999886

>PHA02791 ankyrin-like protein; Provisional

Probab=99.92  E-value=2.3e-24  Score=228.93  Aligned_cols=184  Identities=17%  Similarity=0.083  Sum_probs=151.8

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL   94 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe   94 (724)
                      .+++++..  ++.||||+|+..|+.++|+.|++ .|++++..             |.+|+||||+||..|+.++|++||+
T Consensus        52 ~ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~-~Gadvn~~-------------d~~G~TpLh~Aa~~g~~eivk~Ll~  115 (284)
T PHA02791         52 AGALKNLL--ENEFPLHQAATLEDTKIVKILLF-SGMDDSQF-------------DDKGNTALYYAVDSGNMQTVKLFVK  115 (284)
T ss_pred             CcCCCcCC--CCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            45555544  47899999999999999999999 89999876             6899999999999999999999999


Q ss_pred             cCCCCcccccCCCCC-cHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911           95 HSSADVNVSCGSDRT-TALHCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPIDVIVLPPKLDSMRAILEEVFGSKN  172 (724)
Q Consensus        95 ~~GADVN~~~d~~G~-TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga  172 (724)
                      + |+++|.. +..|+ ||||+|+..|+   .++|++||+++++.  .| ..|.||||+|+..|+.++++.|++.    |+
T Consensus       116 ~-gadin~~-~~~g~~TpL~~Aa~~g~---~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~----gA  184 (284)
T PHA02791        116 K-NWRLMFY-GKTGWKTSFYHAVMLND---VSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDY----MT  184 (284)
T ss_pred             C-CCCcCcc-CCCCCcHHHHHHHHcCC---HHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHC----CC
Confidence            9 9999998 77775 89999999999   99999999997653  23 2589999999999999988877763    43


Q ss_pred             CchhhhcccccccccccCCCCCCCCCh-hchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCcc
Q 004911          173 SSVVVASGAEHNLTVSIGSSNSDYSSP-LLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDI  247 (724)
Q Consensus       173 ~~~~~aa~~~~~l~~~in~~d~~G~TP-Lh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~  247 (724)
                                     +++..|..|.|| ||+|+..|+.++++.|+    ++++++.. .++|      +..++++.|++.
T Consensus       185 ---------------d~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~-~~~l------~~~e~~~~ll~~  242 (284)
T PHA02791        185 ---------------STNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLE-NVLL------DDAEIAKMIIEK  242 (284)
T ss_pred             ---------------CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCccc-CccC------CCHHHHHHHHHh
Confidence                           455677888877 99999999999966665    45555553 3444      677777777654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.2e-24  Score=243.68  Aligned_cols=206  Identities=17%  Similarity=0.159  Sum_probs=162.8

Q ss_pred             ccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc-------------------------------------
Q 004911           12 TEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVD-------------------------------------   54 (724)
Q Consensus        12 ~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn-------------------------------------   54 (724)
                      ..+.+++++..|.+|.||||+||..|+.++++.|++. +...+                                     
T Consensus        56 Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~  134 (477)
T PHA02878         56 LLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRS-INKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLV  134 (477)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHH-HhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHH
Confidence            3456788999999999999999999999988888873 21111                                     


Q ss_pred             --------------ccccccccccCCcccCCC-CChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCC
Q 004911           55 --------------EVGLWYGRVNGSKQMVSE-HRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGG  119 (724)
Q Consensus        55 --------------~~gl~~a~~~g~~~~d~~-G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G  119 (724)
                                    ...++...+...+..+.. |+||||+||..|+.++|++||++ |+++|.. +..|.||||+|+..|
T Consensus       135 ~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~-gad~n~~-d~~g~tpLh~A~~~~  212 (477)
T PHA02878        135 YIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSY-GANVNIP-DKTNNSPLHHAVKHY  212 (477)
T ss_pred             HHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHhC
Confidence                          001222233444555667 99999999999999999999999 9999998 999999999999999


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcC-CCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCC-CCC
Q 004911          120 SANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLP-PKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNS-DYS  197 (724)
Q Consensus       120 ~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~-G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~-~G~  197 (724)
                      +   .+++++|+++|++++.+|..|.||||+|+.. ++.++++.|++    .|+               +++..+. .|.
T Consensus       213 ~---~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~----~ga---------------dvn~~~~~~g~  270 (477)
T PHA02878        213 N---KPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLE----HGV---------------DVNAKSYILGL  270 (477)
T ss_pred             C---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHH----cCC---------------CCCccCCCCCC
Confidence            9   9999999999999999999999999999975 67787776665    443               3444443 799


Q ss_pred             ChhchhHhcCCCch----hhhhcCCCccccCCCCccccccccC-CCCCCCCC
Q 004911          198 SPLLTASASGSPPS----PSRLVSSPMALKFNDVSFGTGAEKR-EYPIDPSL  244 (724)
Q Consensus       198 TPLh~Aa~~G~~ei----Ve~Lad~~a~~~~g~TpLh~Aa~~g-~~~i~~~L  244 (724)
                      ||||+|+  ++.++    ++.+++.++.+..|.||||+|+..+ ..++...|
T Consensus       271 TpLh~A~--~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~l  320 (477)
T PHA02878        271 TALHSSI--KSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRIL  320 (477)
T ss_pred             CHHHHHc--cCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHH
Confidence            9999994  55566    5566788889999999999998743 33444444

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.3e-24  Score=218.20  Aligned_cols=182  Identities=15%  Similarity=0.187  Sum_probs=147.7

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcC--CHHHHHHHHhcC
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYG--SVDVLKLILLHS   96 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G--~~evVklLLe~~   96 (724)
                      .+.......||||.|+..|++++|+.|++ .   ++..             +..|.||||+|+..+  +.++|++||++ 
T Consensus        14 ~~~~~~~~~~pL~~A~~~~~~~~vk~Li~-~---~n~~-------------~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-   75 (209)
T PHA02859         14 TDYLFYRYCNPLFYYVEKDDIEGVKKWIK-F---VNDC-------------NDLYETPIFSCLEKDKVNVEILKFLIEN-   75 (209)
T ss_pred             HHHHhhccCcHHHHHHHhCcHHHHHHHHH-h---hhcc-------------CccCCCHHHHHHHcCCCCHHHHHHHHHC-
Confidence            33445678999999999999999999998 3   3443             478999999999854  89999999999 


Q ss_pred             CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhc--CCCHHHHHHHHHHHHcCCCCc
Q 004911           97 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVL--PPKLDSMRAILEEVFGSKNSS  174 (724)
Q Consensus        97 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~--~G~~eivk~LLe~Ll~~ga~~  174 (724)
                      |+|+|...+..|.||||+|+..+.....+++++|+++|+++|.+|..|.||||+|+.  .++.++++.|++    .|+  
T Consensus        76 gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~----~ga--  149 (209)
T PHA02859         76 GADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLID----SGV--  149 (209)
T ss_pred             CCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHH----cCC--
Confidence            999999833589999999886431111899999999999999999999999999875  467777776665    443  


Q ss_pred             hhhhcccccccccccCCCCCCCCChhch-hHhcCCCchhh----hhcCCCccccCCCCccccccccCC
Q 004911          175 VVVASGAEHNLTVSIGSSNSDYSSPLLT-ASASGSPPSPS----RLVSSPMALKFNDVSFGTGAEKRE  237 (724)
Q Consensus       175 ~~~aa~~~~~l~~~in~~d~~G~TPLh~-Aa~~G~~eiVe----~Lad~~a~~~~g~TpLh~Aa~~g~  237 (724)
                                   +++..|.+|.||||. |+..++.++++    .+++.+.++..|.|||++|...+-
T Consensus       150 -------------din~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~~  204 (209)
T PHA02859        150 -------------SFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRNL  204 (209)
T ss_pred             -------------CcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhhh
Confidence                         566788999999996 45677878755    556677888999999999987654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=2.9e-25  Score=238.23  Aligned_cols=195  Identities=22%  Similarity=0.259  Sum_probs=172.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 004911           23 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV  102 (724)
Q Consensus        23 d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~  102 (724)
                      ..+|.|||.+||++|+.++|++|+++.++++...|--     ....-..+|-+||-.|+..||++|||.||++ ||+||.
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV-----~FDge~IegappLWaAsaAGHl~vVk~L~~~-ga~VN~  112 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSV-----RFDGETIEGAPPLWAASAAGHLEVVKLLLRR-GASVND  112 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceE-----EeCCcccCCCchhhHHhccCcHHHHHHHHHh-cCcccc
Confidence            4567899999999999999999999888888766510     0111136899999999999999999999999 899999


Q ss_pred             ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccc
Q 004911          103 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE  182 (724)
Q Consensus       103 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~  182 (724)
                      . .....|||-.||.-|+   ++|||+|+++|||+++.|..|+|.||+|+..|+.+|+++|++.    |+          
T Consensus       113 t-T~TNStPLraACfDG~---leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~----gA----------  174 (615)
T KOG0508|consen  113 T-TRTNSTPLRAACFDGH---LEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQ----GA----------  174 (615)
T ss_pred             c-cccCCccHHHHHhcch---hHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHh----CC----------
Confidence            8 8888899999999999   9999999999999999999999999999999999999888774    33          


Q ss_pred             cccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC---ccccCCCCccccccccCCCCCCCCCCc
Q 004911          183 HNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP---MALKFNDVSFGTGAEKREYPIDPSLPD  246 (724)
Q Consensus       183 ~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~---a~~~~g~TpLh~Aa~~g~~~i~~~L~d  246 (724)
                           ++|.++..|+|+||.+++.|+.++++.|+..+   ..+..|.|||..|+..|+.+++..|++
T Consensus       175 -----Dvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  175 -----DVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             -----CcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence                 67788899999999999999999999999877   345669999999999999999999876

>PHA02798 ankyrin-like protein; Provisional

Probab=99.90  E-value=4.4e-24  Score=243.41  Aligned_cols=226  Identities=15%  Similarity=0.181  Sum_probs=172.7

Q ss_pred             CCCchHHHHHHH--cCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc-----CCHHHHHHHHhcC
Q 004911           24 EDSFTSMLELAS--NNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY-----GSVDVLKLILLHS   96 (724)
Q Consensus        24 ~~g~TpLh~AA~--~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~-----G~~evVklLLe~~   96 (724)
                      ..+.|+++.+..  .++.++|+.||+ .|+++|..             +..|.||||.|+.+     +..+++++||++ 
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~-~Gadvn~~-------------d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~-   98 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFIN-LGANVNGL-------------DNEYSTPLCTILSNIKDYKHMLDIVKILIEN-   98 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHH-CCCCCCCC-------------CCCCCChHHHHHHhHHhHHhHHHHHHHHHHC-
Confidence            457787775544  458999999999 89999987             68999999999865     679999999999 


Q ss_pred             CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCC---HHHHHHHHHHHHcCC--
Q 004911           97 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK---LDSMRAILEEVFGSK--  171 (724)
Q Consensus        97 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~---~eivk~LLe~Ll~~g--  171 (724)
                      |+|+|.. +.+|.||||+|+..+..+..+++++|+++|||++.+|..|.||||+|+..++   .++++.|++.+.+..  
T Consensus        99 GadiN~~-d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~  177 (489)
T PHA02798         99 GADINKK-NSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTH  177 (489)
T ss_pred             CCCCCCC-CCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccc
Confidence            9999999 9999999999999874444999999999999999999999999999999887   788887776533211  


Q ss_pred             -----CCchhhhcccc-----cc-------cccccCCCCCCCCChhch-------hHhcCCCch---hhhhcCCCccccC
Q 004911          172 -----NSSVVVASGAE-----HN-------LTVSIGSSNSDYSSPLLT-------ASASGSPPS---PSRLVSSPMALKF  224 (724)
Q Consensus       172 -----a~~~~~aa~~~-----~~-------l~~~in~~d~~G~TPLh~-------Aa~~G~~ei---Ve~Lad~~a~~~~  224 (724)
                           .++.+.+....     ..       ...+++..+..|.|+++.       +...++.++   +..+++++.++..
T Consensus       178 ~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~  257 (489)
T PHA02798        178 NNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDEL  257 (489)
T ss_pred             cCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcC
Confidence                 01111110000     00       001334445555666541       122223333   2334678888999


Q ss_pred             CCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          225 NDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       225 g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      |.||||+|+..++.++++.|++.|++++..|..|.++++.+
T Consensus       258 G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A  298 (489)
T PHA02798        258 GFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTA  298 (489)
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHH
Confidence            99999999999999999999999999999999999999886

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=7.5e-24  Score=239.58  Aligned_cols=228  Identities=17%  Similarity=0.145  Sum_probs=152.6

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL   94 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe   94 (724)
                      .+++....+.++.+|||+|+..|++++++.|++ .++++|..             |..|.||||+||..++.|..+.||.
T Consensus       110 ~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~-~~~dvnl~-------------de~~~TpLh~A~~~~~~E~~k~Li~  175 (929)
T KOG0510|consen  110 YGADTPLRNLNKNAPLHLAADSGNYSCLKLLLD-YGADVNLE-------------DENGFTPLHLAARKNKVEAKKELIN  175 (929)
T ss_pred             cCCCCChhhhhccCchhhccccchHHHHHHHHH-hcCCcccc-------------ccCCCchhhHHHhcChHHHHHHHHh
Confidence            466667777777777777777777777777777 56777766             5788888888888888887788888


Q ss_pred             cCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHH-----CCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHc
Q 004911           95 HSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLS-----AGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFG  169 (724)
Q Consensus        95 ~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe-----~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~  169 (724)
                      . |+|+-.. |.+|++|+|.|+..|.   .++.++.+.     ++..+|..|..|.||||.|+..|+.++++.+++.+.+
T Consensus       176 ~-~a~~~K~-~~~~~~~iH~aa~s~s---~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~  250 (929)
T KOG0510|consen  176 K-GADPCKS-DIDGNFPIHEAARSGS---KECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKK  250 (929)
T ss_pred             c-CCCCCcc-cCcCCchHHHHHHhcc---hhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccc
Confidence            8 8888777 8888888888888888   888888887     6788888888888999999988888888877764322


Q ss_pred             CCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCch----hhhhcCCCccccCCCCccccccccCCCCCCCCCC
Q 004911          170 SKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPS----PSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLP  245 (724)
Q Consensus       170 ~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~ei----Ve~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~  245 (724)
                      .. + +.  .+.......-++..|.+|.||||+|++.|+.++    +..|++++.+++++.+|||.|+..|.+..++.|+
T Consensus       251 ~a-~-~~--~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL  326 (929)
T KOG0510|consen  251 IA-D-VQ--LDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLL  326 (929)
T ss_pred             cc-h-hh--hHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHH
Confidence            11 0 00  000111122345556666666666666666655    3333444455555555666665555555555555


Q ss_pred             c-cc-cccccccccccccceee
Q 004911          246 D-IK-NSIYATDEFRMFSFKIR  265 (724)
Q Consensus       246 d-~g-a~i~~~D~~g~~~fkV~  265 (724)
                      + .+ ..++..|..|++++|.+
T Consensus       327 ~~~~~rllne~D~~g~tpLHla  348 (929)
T KOG0510|consen  327 QESDTRLLNESDLHGMTPLHLA  348 (929)
T ss_pred             hCcCccccccccccCCCchhhh
Confidence            5 11 12334455555555554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.88  E-value=7.8e-22  Score=200.82  Aligned_cols=152  Identities=13%  Similarity=0.138  Sum_probs=131.4

Q ss_pred             CCCCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHHHHHH
Q 004911           19 STAETEDSFTSMLELASNN--DVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVLKLIL   93 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G--~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evVklLL   93 (724)
                      ++..+..|.||||+|+..+  +.++|++||+ .|+++|...            +..|.||||+|+..   ++.+++++||
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~-~gadvn~~~------------~~~g~TpLh~a~~~~~~~~~eiv~~Ll  110 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIE-NGADVNFKT------------RDNNLSALHHYLSFNKNVEPEILKILI  110 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHH-CCCCCCccC------------CCCCCCHHHHHHHhCccccHHHHHHHH
Confidence            5678889999999999854  8999999999 899999863            24799999998864   4799999999


Q ss_pred             hcCCCCcccccCCCCCcHHHHHHh--CCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHH-HhcCCCHHHHHHHHHHHHcC
Q 004911           94 LHSSADVNVSCGSDRTTALHCAAS--GGSANVVDVVRLLLSAGADPDCVDANGHHPIDV-IVLPPKLDSMRAILEEVFGS  170 (724)
Q Consensus        94 e~~GADVN~~~d~~G~TPLH~Aa~--~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhl-Aa~~G~~eivk~LLe~Ll~~  170 (724)
                      ++ |+|+|.+ |.+|.||||+|+.  .++   .+++++|+++|++++.+|.+|.||||. |+..++.++++.|++    .
T Consensus       111 ~~-gadin~~-d~~G~TpLh~a~~~~~~~---~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~----~  181 (209)
T PHA02859        111 DS-GSSITEE-DEDGKNLLHMYMCNFNVR---INVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTS----L  181 (209)
T ss_pred             HC-CCCCCCc-CCCCCCHHHHHHHhccCC---HHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHH----c
Confidence            99 9999999 9999999999986  457   999999999999999999999999996 566788777766554    4


Q ss_pred             CCCchhhhcccccccccccCCCCCCCCChhchhHhcC
Q 004911          171 KNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASG  207 (724)
Q Consensus       171 ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G  207 (724)
                      |+               +++.+|..|.||||+|+.++
T Consensus       182 Ga---------------di~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        182 GI---------------DINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CC---------------CCCCCCCCCCCHHHHHhhhh
Confidence            53               56778999999999998876

>PHA02917 ankyrin-like protein; Provisional

Probab=99.88  E-value=1.6e-22  Score=237.15  Aligned_cols=248  Identities=15%  Similarity=0.066  Sum_probs=178.6

Q ss_pred             ccccCCCCCCCCCCCchHHHHHH--HcCCHHHHHHHHhcCCCCcccccc--ccccccCCcccCCCCChHHHHHHH-----
Q 004911           12 TEDMNNNSTAETEDSFTSMLELA--SNNDVEGFKRMLERDPSSVDEVGL--WYGRVNGSKQMVSEHRTPLMVAAT-----   82 (724)
Q Consensus        12 ~~~m~~di~~~d~~g~TpLh~AA--~~G~le~Vk~LLe~~gadIn~~gl--~~a~~~g~~~~d~~G~TPLH~AA~-----   82 (724)
                      ..+.+++++..|.+|.||||+|+  ..|+.++|++||+ .|++++..+-  .++.... ......+.||||+|+.     
T Consensus       122 Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~-~Ga~vn~~d~~~~~g~~~~-~~~~~~~~t~L~~a~~~~~~~  199 (661)
T PHA02917        122 LVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIE-NGCSVLYEDEDDEYGYAYD-DYQPRNCGTVLHLYIISHLYS  199 (661)
T ss_pred             HHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHH-cCCCccccccccccccccc-cccccccccHHHHHHhhcccc
Confidence            34568999999999999999764  4789999999999 8999975420  0000000 0012345799999986     


Q ss_pred             ------cCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCC----CCCCCCCcHHHHHh
Q 004911           83 ------YGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPD----CVDANGHHPIDVIV  152 (724)
Q Consensus        83 ------~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n----~~D~~G~TPLhlAa  152 (724)
                            +++.++|++||++ |+|+|.. |.+|+||||+|+..|+.+ .++|++|++ |++++    ..|..|.+|+|+|+
T Consensus       200 ~~~~~~~~~~eiv~~Li~~-Gadvn~~-d~~G~TpLh~A~~~g~~~-~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~  275 (661)
T PHA02917        200 ESDTRAYVRPEVVKCLINH-GIKPSSI-DKNYCTALQYYIKSSHID-IDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMAD  275 (661)
T ss_pred             cccccccCcHHHHHHHHHC-CCCcccC-CCCCCcHHHHHHHcCCCc-HHHHHHHHh-CCcccccccccCcccccchHHHH
Confidence                  5689999999999 9999999 999999999999999822 479999975 88875    45667888888888


Q ss_pred             cC-------C--CHHHHHHHHHHH-----------------------------------------------------HcC
Q 004911          153 LP-------P--KLDSMRAILEEV-----------------------------------------------------FGS  170 (724)
Q Consensus       153 ~~-------G--~~eivk~LLe~L-----------------------------------------------------l~~  170 (724)
                      .-       +  +.++++.|++.+                                                     ++.
T Consensus       276 yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~  355 (661)
T PHA02917        276 YLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEY  355 (661)
T ss_pred             HHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHc
Confidence            31       1  344454444322                                                     222


Q ss_pred             CCCchhhhcccccc-----------c----ccccCCCCCCCCChhchhHhcCC-----------------------Cch-
Q 004911          171 KNSSVVVASGAEHN-----------L----TVSIGSSNSDYSSPLLTASASGS-----------------------PPS-  211 (724)
Q Consensus       171 ga~~~~~aa~~~~~-----------l----~~~in~~d~~G~TPLh~Aa~~G~-----------------------~ei-  211 (724)
                      |++....+-.+...           +    ..+++..+.+|.||||.|++.+.                       .++ 
T Consensus       356 GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  435 (661)
T PHA02917        356 GAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTI  435 (661)
T ss_pred             CCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHH
Confidence            22211110000000           0    01244556679999999985443                       112 


Q ss_pred             ---hhhhcCCCccccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          212 ---PSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       212 ---Ve~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                         +.+|++.++++..|.||||+|+..+..++++.|++.|++++..|..+.++++.+
T Consensus       436 ~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A  492 (661)
T PHA02917        436 NICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIA  492 (661)
T ss_pred             HHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence               666778899999999999999999999999999999999999999999998876

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=2.6e-22  Score=215.69  Aligned_cols=158  Identities=23%  Similarity=0.343  Sum_probs=143.3

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 004911           21 AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADV  100 (724)
Q Consensus        21 ~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADV  100 (724)
                      -.+.+|.+||-.|+..|++++||.||+ .|++||..             .....|||--||.-|++++||||+++ |+|+
T Consensus        79 ge~IegappLWaAsaAGHl~vVk~L~~-~ga~VN~t-------------T~TNStPLraACfDG~leivKyLvE~-gad~  143 (615)
T KOG0508|consen   79 GETIEGAPPLWAASAAGHLEVVKLLLR-RGASVNDT-------------TRTNSTPLRAACFDGHLEIVKYLVEH-GADP  143 (615)
T ss_pred             CcccCCCchhhHHhccCcHHHHHHHHH-hcCccccc-------------cccCCccHHHHHhcchhHHHHHHHHc-CCCC
Confidence            346689999999999999999999999 77999986             35566999999999999999999999 9999


Q ss_pred             ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcc
Q 004911          101 NVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASG  180 (724)
Q Consensus       101 N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~  180 (724)
                      +.. |..|.|.||+||..|+   .+|+++||+.|||+|.++..|+|+||.++..|+.++++.|+..    |+        
T Consensus       144 ~Ia-nrhGhTcLmIa~ykGh---~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~----ga--------  207 (615)
T KOG0508|consen  144 EIA-NRHGHTCLMIACYKGH---VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKH----GA--------  207 (615)
T ss_pred             ccc-ccCCCeeEEeeeccCc---hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhC----Cc--------
Confidence            999 9999999999999999   9999999999999999999999999999999999999877764    32        


Q ss_pred             cccccccccCCCCCCCCChhchhHhcCCCchhhhhcC
Q 004911          181 AEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS  217 (724)
Q Consensus       181 ~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad  217 (724)
                              .-..|..|.|||..|+..|+.++|++|++
T Consensus       208 --------~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  208 --------KIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             --------eeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence                    11235679999999999999999999997

>PHA02917 ankyrin-like protein; Provisional

Probab=99.86  E-value=1.2e-21  Score=229.84  Aligned_cols=210  Identities=14%  Similarity=0.041  Sum_probs=156.7

Q ss_pred             CCCCCCCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHH----H
Q 004911           16 NNNSTAETEDSFTSMLELASN---NDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVD----V   88 (724)
Q Consensus        16 ~~di~~~d~~g~TpLh~AA~~---G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~e----v   88 (724)
                      +..++..|.+|.||||+|+..   |+.++|+.||+ .|++++..             +.+|+||||+|+..|+.+    +
T Consensus        22 ~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~-~ga~v~~~-------------~~~g~TpL~~Aa~~g~~~v~~~~   87 (661)
T PHA02917         22 RDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLD-SGTNPLHK-------------NWRQLTPLEEYTNSRHVKVNKDI   87 (661)
T ss_pred             cCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHH-CCCCcccc-------------CCCCCCHHHHHHHcCChhHHHHH
Confidence            344567799999999998555   88999999999 89999876             589999999999999955    5


Q ss_pred             HHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHH--hcCCCHHHHHHHHHH
Q 004911           89 LKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVI--VLPPKLDSMRAILEE  166 (724)
Q Consensus        89 VklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlA--a~~G~~eivk~LLe~  166 (724)
                      |++||+. +..+|.. +  ..+++|+|+..|+   +++|++||++|||+|.+|.+|+||||+|  +..|+.++++.|++.
T Consensus        88 ~~~Ll~~-~~~~n~~-~--~~~~~~~a~~~~~---~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~  160 (661)
T PHA02917         88 AMALLEA-TGYSNIN-D--FNIFSYMKSKNVD---VDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIEN  160 (661)
T ss_pred             HHHHHhc-cCCCCCC-C--cchHHHHHhhcCC---HHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHc
Confidence            6788887 4435543 2  3478888999999   9999999999999999999999999964  357898888877664


Q ss_pred             HHcCCCCchhhhcccccccccccCCCCCCCCChhchhHh-----------cCCCchhhhh----cCCCccccCCCCcccc
Q 004911          167 VFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASA-----------SGSPPSPSRL----VSSPMALKFNDVSFGT  231 (724)
Q Consensus       167 Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~-----------~G~~eiVe~L----ad~~a~~~~g~TpLh~  231 (724)
                          |++............. ..+.....+.||||+|+.           .++.+++++|    ++++.++..|.||||+
T Consensus       161 ----Ga~vn~~d~~~~~g~~-~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~  235 (661)
T PHA02917        161 ----GCSVLYEDEDDEYGYA-YDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQY  235 (661)
T ss_pred             ----CCCccccccccccccc-cccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHH
Confidence                4322110000000000 011223455799999986           3567775554    5778889999999999


Q ss_pred             ccccCCC--CCCCCCCccccccc
Q 004911          232 GAEKREY--PIDPSLPDIKNSIY  252 (724)
Q Consensus       232 Aa~~g~~--~i~~~L~d~ga~i~  252 (724)
                      |+..|+.  ++++.|++ |+++.
T Consensus       236 A~~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        236 YIKSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             HHHcCCCcHHHHHHHHh-CCccc
Confidence            9999986  58888865 66554

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.85  E-value=7.1e-22  Score=222.31  Aligned_cols=222  Identities=20%  Similarity=0.215  Sum_probs=187.4

Q ss_pred             cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911           13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI   92 (724)
Q Consensus        13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL   92 (724)
                      ..-..+++..|.+|+|+||.|+.+|+.++++.|++ ..+.++..             |.+|.+|||+||..|+.++||+|
T Consensus        36 ~trsds~n~qd~~gfTalhha~Lng~~~is~llle-~ea~ldl~-------------d~kg~~plhlaaw~g~~e~vkml  101 (854)
T KOG0507|consen   36 TTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLD-YEALLDLC-------------DTKGILPLHLAAWNGNLEIVKML  101 (854)
T ss_pred             CCCCccccccCccchhHHHHHHhcCchHHHHHHhc-chhhhhhh-------------hccCcceEEehhhcCcchHHHHH
Confidence            33455577889999999999999999999999999 56666655             57899999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911           93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN  172 (724)
Q Consensus        93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga  172 (724)
                      |.+ +..+|.. ...|.||||.||..||   .++|.+||.+|+|+-++|..+.|+|++|++.|..++++.++..-+.   
T Consensus       102 l~q-~d~~na~-~~e~~tplhlaaqhgh---~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~---  173 (854)
T KOG0507|consen  102 LLQ-TDILNAV-NIENETPLHLAAQHGH---LEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFP---  173 (854)
T ss_pred             Hhc-ccCCCcc-cccCcCccchhhhhcc---hHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccc---
Confidence            999 8899999 9999999999999999   9999999999999999999999999999999999999988774111   


Q ss_pred             CchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccc---cCCCCccccccccCCCCCCCCCCcccc
Q 004911          173 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMAL---KFNDVSFGTGAEKREYPIDPSLPDIKN  249 (724)
Q Consensus       173 ~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~---~~g~TpLh~Aa~~g~~~i~~~L~d~ga  249 (724)
                          +..    ...+.-..++..+-+|||+|+++|+.++++.++..+...   ....|+||.|+..|..+++.+|++.|.
T Consensus       174 ----~~~----~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~~gi  245 (854)
T KOG0507|consen  174 ----VQS----SLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLEIGI  245 (854)
T ss_pred             ----hhh----cccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHhhcc
Confidence                100    112223455677889999999999999977776555322   235689999999999999999999999


Q ss_pred             cccccccccccccee
Q 004911          250 SIYATDEFRMFSFKI  264 (724)
Q Consensus       250 ~i~~~D~~g~~~fkV  264 (724)
                      ....++..+.+.+++
T Consensus       246 n~h~~n~~~qtaldi  260 (854)
T KOG0507|consen  246 NTHIKNQHGQTALDI  260 (854)
T ss_pred             ccccccccchHHHHH
Confidence            998888888777665

>PHA02795 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.1e-21  Score=217.05  Aligned_cols=205  Identities=13%  Similarity=0.046  Sum_probs=167.3

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHH--cCCHHHHHHH
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAAT--YGSVDVLKLI   92 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~--~G~~evVklL   92 (724)
                      .+.+++..+.+|     +|+..+..|+++.|+. .|+++|.....       .+.+..++|+||+|+.  +|+.++|++|
T Consensus        71 ~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s-~~~~~~~~~~~-------~~~~~~~~~~L~~~~~n~~n~~eiV~~L  137 (437)
T PHA02795         71 HRDNIDQYIVDR-----LFAYITYKDIISALVS-KNYMEDIFSII-------IKNCNSVQDLLLYYLSNAYVEIDIVDFM  137 (437)
T ss_pred             cCcchhhhhhhh-----HHhhcchHHHHHHHHh-cccccchhhhh-------hhccccccHHHHHHHHhcCCCHHHHHHH
Confidence            345666666666     8999999999999999 89998822100       0125679999999999  8999999999


Q ss_pred             HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCC-C-----CCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911           93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC-V-----DANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus        93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~-~-----D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      |++ |||+|..   ++.||||+|+..++   .++|++|+++|++... .     +..|.|++|.|...++.++++.|++ 
T Consensus       138 I~~-GADIn~~---~~~t~lh~A~~~~~---~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs-  209 (437)
T PHA02795        138 VDH-GAVIYKI---ECLNAYFRGICKKE---SSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP-  209 (437)
T ss_pred             HHC-CCCCCCC---CCCCHHHHHHHcCc---HHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh-
Confidence            999 9999975   55899999999999   9999999999985432 2     2358899999999998888876665 


Q ss_pred             HHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhh----hcCCCccccCCCCccccccccCC-----
Q 004911          167 VFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKFNDVSFGTGAEKRE-----  237 (724)
Q Consensus       167 Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~----Lad~~a~~~~g~TpLh~Aa~~g~-----  237 (724)
                         .|+               +++.+|..|.||||+|+..|+.+++++    |+++++++..|.||||+|+..|.     
T Consensus       210 ---~GA---------------DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~  271 (437)
T PHA02795        210 ---YIE---------------DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARR  271 (437)
T ss_pred             ---CcC---------------CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCccccc
Confidence               453               677889999999999999999998555    56777889999999999999884     


Q ss_pred             ---CCCCCCCCccccccccccccc
Q 004911          238 ---YPIDPSLPDIKNSIYATDEFR  258 (724)
Q Consensus       238 ---~~i~~~L~d~ga~i~~~D~~g  258 (724)
                         .+++..|+..++++++.+...
T Consensus       272 ~~~~eIvelLL~~gadI~~~~~~~  295 (437)
T PHA02795        272 ETHLKILEILLREPLSIDCIKLAI  295 (437)
T ss_pred             ccHHHHHHHHHhCCCCCCchhHHh
Confidence               478889999999888765443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.85  E-value=9.4e-21  Score=209.76  Aligned_cols=167  Identities=14%  Similarity=0.099  Sum_probs=143.7

Q ss_pred             cCCCCC------CCCCCCchHHHHHHH--cCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCH
Q 004911           15 MNNNST------AETEDSFTSMLELAS--NNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSV   86 (724)
Q Consensus        15 m~~di~------~~d~~g~TpLh~AA~--~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~   86 (724)
                      .+++++      ..++.+.|+||+|+.  .|++++|++||+ +|++++..               ++.||||.|+..|+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~-~GADIn~~---------------~~~t~lh~A~~~~~~  162 (437)
T PHA02795         99 KNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVD-HGAVIYKI---------------ECLNAYFRGICKKES  162 (437)
T ss_pred             cccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHH-CCCCCCCC---------------CCCCHHHHHHHcCcH
Confidence            456655      678889999999999  999999999999 99999874               468999999999999


Q ss_pred             HHHHHHHhcCCCCcccccC-----CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHH
Q 004911           87 DVLKLILLHSSADVNVSCG-----SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMR  161 (724)
Q Consensus        87 evVklLLe~~GADVN~~~d-----~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk  161 (724)
                      ++|++|+++ |++.+...+     ..+.|++|.|+..++   .+++++|+++|||+|.+|..|.||||+|+..|+.++++
T Consensus       163 eIVk~Lls~-Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~---~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        163 SVVEFILNC-GIPDENDVKLDLYKIIQYTRGFLVDEPTV---LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             HHHHHHHhc-CCcccccccchhhhhhccchhHHHHhcCH---HHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999 875433211     348899999999999   99999999999999999999999999999999988887


Q ss_pred             HHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCC--------CchhhhhcCCCc
Q 004911          162 AILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGS--------PPSPSRLVSSPM  220 (724)
Q Consensus       162 ~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~--------~eiVe~Lad~~a  220 (724)
                      .|++    .|+               +++..|..|.||||+|+..|+        .++++.|+..++
T Consensus       239 lLL~----~GA---------------dIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        239 WLLE----NGA---------------NVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             HHHH----CCC---------------CCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCC
Confidence            6665    453               567789999999999999995        478888887664

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.84  E-value=2.6e-20  Score=224.86  Aligned_cols=172  Identities=20%  Similarity=0.199  Sum_probs=142.9

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911           22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN  101 (724)
Q Consensus        22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN  101 (724)
                      .+.++.++||.||..|+.++++.||+ .|+++|..             |.+|+||||+||..|+.++|++||++ |+|+|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~-~G~d~n~~-------------d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadin  585 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLK-AKLDPDIG-------------DSKGRTPLHIAASKGYEDCVLVLLKH-ACNVH  585 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcChHHHHHHHHhc-CCCCC
Confidence            44456789999999999999999998 78888876             68899999999999999999999998 99999


Q ss_pred             cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccc
Q 004911          102 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGA  181 (724)
Q Consensus       102 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~  181 (724)
                      .+ |.+|+||||+|+..|+   .+++++|++.++..+.  ..|.++||+|+..|+.++++.|++    .|+         
T Consensus       586 ~~-d~~G~TpL~~A~~~g~---~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~----~Ga---------  646 (823)
T PLN03192        586 IR-DANGNTALWNAISAKH---HKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLK----QGL---------  646 (823)
T ss_pred             Cc-CCCCCCHHHHHHHhCC---HHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHH----CCC---------
Confidence            98 9999999999999999   9999999988876553  457799999999999888887765    342         


Q ss_pred             ccccccccCCCCCCCCChhchhHhcCCCchhhhhcC----CCccccCC-CCcccccc
Q 004911          182 EHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS----SPMALKFN-DVSFGTGA  233 (724)
Q Consensus       182 ~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad----~~a~~~~g-~TpLh~Aa  233 (724)
                            +++..|.+|.||||+|+..|+.++++.|++    .+..+..| .+|++++.
T Consensus       647 ------din~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~  697 (823)
T PLN03192        647 ------NVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRE  697 (823)
T ss_pred             ------CCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Confidence                  567788999999999999999998666654    44555555 66666553

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.83  E-value=6.5e-21  Score=227.61  Aligned_cols=200  Identities=21%  Similarity=0.218  Sum_probs=150.6

Q ss_pred             cccCCCCCCCCCCCchHHHHHHHcC-CHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHH
Q 004911           13 EDMNNNSTAETEDSFTSMLELASNN-DVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKL   91 (724)
Q Consensus        13 ~~m~~di~~~d~~g~TpLh~AA~~G-~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVkl   91 (724)
                      .+.+++.+..+..|+|+||+|+..| ..+....++. .|.++|..             ...|.||||+|+..|+.++++.
T Consensus       427 l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~-~g~~~n~~-------------s~~G~T~Lhlaaq~Gh~~~~~l  492 (1143)
T KOG4177|consen  427 LKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQ-YGADPNAV-------------SKQGFTPLHLAAQEGHTEVVQL  492 (1143)
T ss_pred             eccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhh-cCCCcchh-------------ccccCcchhhhhccCCchHHHH
Confidence            3345555666666666666666666 4444444444 56666554             4678888888888888888888


Q ss_pred             HHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCC
Q 004911           92 ILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSK  171 (724)
Q Consensus        92 LLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~g  171 (724)
                      |++. ++.++.. ...|-|+||.|+..+.   +.+++.|+++|++++.++..|.||||+|+..|+.+.|++|++    +|
T Consensus       493 lle~-~~~~~~~-~~~~l~~lhla~~~~~---v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe----~g  563 (1143)
T KOG4177|consen  493 LLEG-GANDNLD-AKKGLTPLHLAADEDT---VKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLE----HG  563 (1143)
T ss_pred             hhhc-CCccCcc-chhccchhhhhhhhhh---HHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhh----CC
Confidence            8877 6666666 6677788888888777   888888888888888888888888888888888877776665    34


Q ss_pred             CCchhhhcccccccccccCCCCCCCCChhchhHhcCCCch----hhhhcCCCccccCCCCccccccccCCCCCCCCCCcc
Q 004911          172 NSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPS----PSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDI  247 (724)
Q Consensus       172 a~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~ei----Ve~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~  247 (724)
                      +               +++.+++.|+||||.||..|+.+|    ++.|+++++.+..|.|||++|+..|++.+++.|...
T Consensus       564 A---------------dv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~  628 (1143)
T KOG4177|consen  564 A---------------DVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVV  628 (1143)
T ss_pred             c---------------cccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhc
Confidence            3               555667888888888888888887    566677778888888888888888888888888777


Q ss_pred             ccc
Q 004911          248 KNS  250 (724)
Q Consensus       248 ga~  250 (724)
                      +..
T Consensus       629 ~~~  631 (1143)
T KOG4177|consen  629 TAT  631 (1143)
T ss_pred             cCc
Confidence            776

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.83  E-value=6e-22  Score=236.38  Aligned_cols=227  Identities=24%  Similarity=0.275  Sum_probs=184.5

Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 004911           20 TAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSAD   99 (724)
Q Consensus        20 ~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD   99 (724)
                      ...++.++||+|.|+..|.+++++.+++ .|+++|..+             ..|.||||+|+.+++..+|++++++ |++
T Consensus       368 ~~a~~k~~~pl~la~~~g~~~~v~Lll~-~ga~~~~~g-------------k~gvTplh~aa~~~~~~~v~l~l~~-gA~  432 (1143)
T KOG4177|consen  368 RQAEEKGFTPLHLAVKSGRVSVVELLLE-AGADPNSAG-------------KNGVTPLHVAAHYGNPRVVKLLLKR-GAS  432 (1143)
T ss_pred             CcccccCCcchhhhcccCchhHHHhhhh-ccCCcccCC-------------CCCcceeeehhhccCcceEEEEecc-CCC
Confidence            3456677788888888888888888877 677777764             7889999999999999999999988 899


Q ss_pred             cccccCCCCCcHHHHHHhCC-CCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHH------cCCC
Q 004911          100 VNVSCGSDRTTALHCAASGG-SANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVF------GSKN  172 (724)
Q Consensus       100 VN~~~d~~G~TPLH~Aa~~G-~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll------~~ga  172 (724)
                      +|.. +..|.||+|+|+..| .   .+++..+++.|+++|..-..|.||||+|+..|+.+.++.+++...      +.+.
T Consensus       433 ~~~~-~~lG~T~lhvaa~~g~~---~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l  508 (1143)
T KOG4177|consen  433 PNAK-AKLGYTPLHVAAKKGRY---LQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGL  508 (1143)
T ss_pred             hhhH-hhcCCChhhhhhhcccH---hhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhcc
Confidence            9988 888999999999988 6   888889999999999999999999999999999888888877431      1122


Q ss_pred             Cchhhhcccccc--------cccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCC
Q 004911          173 SSVVVASGAEHN--------LTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPI  240 (724)
Q Consensus       173 ~~~~~aa~~~~~--------l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i  240 (724)
                      ...+.+...+..        -..+++.++..|.||||.|+..|+.++|++|    ++++++++.|+||||.|+..|++++
T Consensus       509 ~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i  588 (1143)
T KOG4177|consen  509 TPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDI  588 (1143)
T ss_pred             chhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHH
Confidence            222222222211        1146677888999999999999999996665    5677889999999999999999999


Q ss_pred             CCCCCccccccccccccccccceee
Q 004911          241 DPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       241 ~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      +..|++.|++++..|-.+.++++++
T Consensus       589 ~~LLlk~GA~vna~d~~g~TpL~iA  613 (1143)
T KOG4177|consen  589 AELLLKHGASVNAADLDGFTPLHIA  613 (1143)
T ss_pred             HHHHHHcCCCCCcccccCcchhHHH
Confidence            9999999999999999999988875

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=8.4e-21  Score=198.91  Aligned_cols=162  Identities=23%  Similarity=0.277  Sum_probs=143.2

Q ss_pred             CCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc-----CCHHHHHHH
Q 004911           18 NSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY-----GSVDVLKLI   92 (724)
Q Consensus        18 di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~-----G~~evVklL   92 (724)
                      -+|+-|.+|.|+||||+..+|+++|+.||+.+-++||..+             .-|+||+|+||..     .+.++|.-|
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qN-------------rAGYtpiMLaALA~lk~~~d~~vV~~L  326 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQN-------------RAGYTPVMLAALAKLKQPADRTVVERL  326 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccc-------------cccccHHHHHHHHhhcchhhHHHHHHH
Confidence            3788999999999999999999999999997778899874             8899999999874     468899999


Q ss_pred             HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911           93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN  172 (724)
Q Consensus        93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga  172 (724)
                      ...  .|||++....|.|+|++|+..|+   +++|+.||..|||+|++|.+|-|+|++|+.+||.|+++.||..    . 
T Consensus       327 F~m--gnVNaKAsQ~gQTALMLAVSHGr---~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~----p-  396 (452)
T KOG0514|consen  327 FKM--GDVNAKASQHGQTALMLAVSHGR---VDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV----P-  396 (452)
T ss_pred             Hhc--cCcchhhhhhcchhhhhhhhcCc---HHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc----C-
Confidence            886  68898877899999999999999   9999999999999999999999999999999999999877652    1 


Q ss_pred             CchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh
Q 004911          173 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL  215 (724)
Q Consensus       173 ~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L  215 (724)
                                   ..++.-.|.+|.|+|.+|...|+.+|...+
T Consensus       397 -------------~cd~sLtD~DgSTAl~IAleagh~eIa~ml  426 (452)
T KOG0514|consen  397 -------------SCDISLTDVDGSTALSIALEAGHREIAVML  426 (452)
T ss_pred             -------------cccceeecCCCchhhhhHHhcCchHHHHHH
Confidence                         124556789999999999999999984433

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=6.2e-20  Score=180.48  Aligned_cols=132  Identities=17%  Similarity=0.214  Sum_probs=118.6

Q ss_pred             CCCCCCCCCchHHHHHHHcCCHHHHHHHHhc-----CCCCccccccccccccCCcccCCCCChHHHHHHHcCC----HHH
Q 004911           18 NSTAETEDSFTSMLELASNNDVEGFKRMLER-----DPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGS----VDV   88 (724)
Q Consensus        18 di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~-----~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~----~ev   88 (724)
                      .++..+.+|.|+||+||..|++++|+.|+..     .|++++..             |..|+||||+|+..|+    .++
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-------------d~~g~T~Lh~A~~~g~~~~~~~i   79 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT-------------DDAGQMCIHIAAEKHEAQLAAEI   79 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc-------------CCCCCcHHHHHHHcCChHHHHHH
Confidence            4667889999999999999999999998652     24666655             6889999999999999    589


Q ss_pred             HHHHHhcCCCCcccccCC-CCCcHHHHHHhCCCCCHHHHHHHHHH-CCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911           89 LKLILLHSSADVNVSCGS-DRTTALHCAASGGSANVVDVVRLLLS-AGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus        89 VklLLe~~GADVN~~~d~-~G~TPLH~Aa~~G~~~~~eiVklLLe-~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      +++|++. |+++|.+ +. .|+||||+|+..++   .+++++||+ .|++++..|..|+||||+|+..++.++++.|+++
T Consensus        80 i~~Ll~~-gadin~~-~~~~g~TpLh~A~~~~~---~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         80 IDHLIEL-GADINAQ-EMLEGDTALHLAAHRRD---HDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             HHHHHHc-CCCCCCC-CcCCCCCHHHHHHHcCC---HHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            9999999 9999998 64 89999999999999   999999998 5999999999999999999999999999988886


Q ss_pred             H
Q 004911          167 V  167 (724)
Q Consensus       167 L  167 (724)
                      .
T Consensus       155 ~  155 (169)
T PHA02741        155 V  155 (169)
T ss_pred             H
Confidence            4

>PHA02792 ankyrin-like protein; Provisional

Probab=99.83  E-value=1.1e-20  Score=216.10  Aligned_cols=233  Identities=15%  Similarity=0.080  Sum_probs=181.3

Q ss_pred             cCCCCCCCCCCCchHHHHH-HHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHH-cCCHHHHHHH
Q 004911           15 MNNNSTAETEDSFTSMLEL-ASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAAT-YGSVDVLKLI   92 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~A-A~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~-~G~~evVklL   92 (724)
                      +....+..+.+|++++|+- ..+|++|+|++||+ +|+++|..             +..|.|+||+|+. .++.|||++|
T Consensus        60 ~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~-~GAdvN~~-------------~n~~~~~l~ya~~~~~~~eivk~L  125 (631)
T PHA02792         60 LLSSVDYKNINDFDIFEYLCSDNIDIELLKLLIS-KGLEINSI-------------KNGINIVEKYATTSNPNVDVFKLL  125 (631)
T ss_pred             HHhCCCcCccCCccHHHHHHHhcccHHHHHHHHH-cCCCcccc-------------cCCCCcceeEeecCCCChHHHHHH
Confidence            4445667888899999875 55789999999999 89999987             4678999999976 6999999999


Q ss_pred             HhcCCCCcccc-----------------------------------cCCCCCcHHHHHHhCC-------CCCHHHHHHHH
Q 004911           93 LLHSSADVNVS-----------------------------------CGSDRTTALHCAASGG-------SANVVDVVRLL  130 (724)
Q Consensus        93 Le~~GADVN~~-----------------------------------~d~~G~TPLH~Aa~~G-------~~~~~eiVklL  130 (724)
                      |++ |||+...                                   .+..|.||||+|+..+       +   .||+++|
T Consensus       126 l~~-Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~---~~v~k~L  201 (631)
T PHA02792        126 LDK-GIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATS---LDVINYL  201 (631)
T ss_pred             HHC-CCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCC---HHHHHHH
Confidence            999 9874320                                   1566999999999998       6   9999999


Q ss_pred             HHCCCCCCCCCCCCCcHHHHHhcCC--CHHHHHHHHH-------------------------------------------
Q 004911          131 LSAGADPDCVDANGHHPIDVIVLPP--KLDSMRAILE-------------------------------------------  165 (724)
Q Consensus       131 Le~GAd~n~~D~~G~TPLhlAa~~G--~~eivk~LLe-------------------------------------------  165 (724)
                      |++||+++..|..|.||||+|+.+.  +.|+++.|++                                           
T Consensus       202 i~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~  281 (631)
T PHA02792        202 ISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFY  281 (631)
T ss_pred             HhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccc
Confidence            9999999999999999999999988  6777776653                                           


Q ss_pred             --------------------------------------------HHHcCCCCch--------hhhcc-cccc-------c
Q 004911          166 --------------------------------------------EVFGSKNSSV--------VVASG-AEHN-------L  185 (724)
Q Consensus       166 --------------------------------------------~Ll~~ga~~~--------~~aa~-~~~~-------l  185 (724)
                                                                  .+++.|++..        +.++. ++..       .
T Consensus       282 i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~  361 (631)
T PHA02792        282 ILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKN  361 (631)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHc
Confidence                                                        1122222110        00000 0000       0


Q ss_pred             ccccCCCCCCC--CChhchhHhcCCCch-------hhhhcCCCccccCCCCccccccccCCCCCCCCCCccccccccccc
Q 004911          186 TVSIGSSNSDY--SSPLLTASASGSPPS-------PSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDE  256 (724)
Q Consensus       186 ~~~in~~d~~G--~TPLh~Aa~~G~~ei-------Ve~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~  256 (724)
                      ..+++..|.+|  .||||.|+.....++       ++++++.+.++..|.||||+|+..++.+++..|++.|++++..|.
T Consensus       362 GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~  441 (631)
T PHA02792        362 GNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTK  441 (631)
T ss_pred             CCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            02556666664  699998777665432       345678999999999999999999999999999999999999999


Q ss_pred             cccccceee
Q 004911          257 FRMFSFKIR  265 (724)
Q Consensus       257 ~g~~~fkV~  265 (724)
                      .|.++++.+
T Consensus       442 ~G~TpL~~A  450 (631)
T PHA02792        442 YGSTCIGIC  450 (631)
T ss_pred             CCCCHHHHH
Confidence            999998875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.82  E-value=2.3e-20  Score=184.24  Aligned_cols=132  Identities=27%  Similarity=0.348  Sum_probs=124.1

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL   94 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe   94 (724)
                      .++.+|..|+.|+|||++|++.|++++|++||+ .|++++..+             +...|+|++|++.|.++||++||+
T Consensus       149 ~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~-~GAdp~~lg-------------k~resALsLAt~ggytdiV~lLL~  214 (296)
T KOG0502|consen  149 VNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLN-SGADPDALG-------------KYRESALSLATRGGYTDIVELLLT  214 (296)
T ss_pred             hhccccCccccCchHhHHHHhcCchHHHHHHHH-cCCChhhhh-------------hhhhhhHhHHhcCChHHHHHHHHh
Confidence            467799999999999999999999999999999 899999885             677899999999999999999999


Q ss_pred             cCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911           95 HSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus        95 ~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      . +.|||.. |.+|-|||-+|++.+|   +++|+.||+.|||++..|..|++++.+|+..|+. +++.+++.
T Consensus       215 r-~vdVNvy-DwNGgTpLlyAvrgnh---vkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~  280 (296)
T KOG0502|consen  215 R-EVDVNVY-DWNGGTPLLYAVRGNH---VKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK  280 (296)
T ss_pred             c-CCCccee-ccCCCceeeeeecCCh---HHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHH
Confidence            9 9999999 9999999999999999   9999999999999999999999999999999986 77777774

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.82  E-value=3.2e-20  Score=183.31  Aligned_cols=141  Identities=23%  Similarity=0.230  Sum_probs=114.0

Q ss_pred             CcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCC
Q 004911           66 SKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGH  145 (724)
Q Consensus        66 ~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~  145 (724)
                      .+..|+.|.|||++|+..|++++|++||+. |||++.. ++...|+|.+|+.+|.   .+||++||+++.|+|..|-+|-
T Consensus       153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~l-gk~resALsLAt~ggy---tdiV~lLL~r~vdVNvyDwNGg  227 (296)
T KOG0502|consen  153 VNACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDAL-GKYRESALSLATRGGY---TDIVELLLTREVDVNVYDWNGG  227 (296)
T ss_pred             ccCccccCchHhHHHHhcCchHHHHHHHHc-CCChhhh-hhhhhhhHhHHhcCCh---HHHHHHHHhcCCCcceeccCCC
Confidence            344578899999999999999999999998 9999988 8888899999999999   9999999999999999999999


Q ss_pred             cHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCch---hhhhcCCCccc
Q 004911          146 HPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPS---PSRLVSSPMAL  222 (724)
Q Consensus       146 TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~ei---Ve~Lad~~a~~  222 (724)
                      |||-+|++.++.+|++.|++    .|+               +++..+..|.+++..|+..|+..+   ++.-++...++
T Consensus       228 TpLlyAvrgnhvkcve~Ll~----sGA---------------d~t~e~dsGy~~mdlAValGyr~Vqqvie~h~lkl~Q~  288 (296)
T KOG0502|consen  228 TPLLYAVRGNHVKCVESLLN----SGA---------------DVTQEDDSGYWIMDLAVALGYRIVQQVIEKHALKLCQD  288 (296)
T ss_pred             ceeeeeecCChHHHHHHHHh----cCC---------------CcccccccCCcHHHHHHHhhhHHHHHHHHHHHHHHhhc
Confidence            99999999999888876655    443               445567788999999999988733   45555555666


Q ss_pred             cCCCCccc
Q 004911          223 KFNDVSFG  230 (724)
Q Consensus       223 ~~g~TpLh  230 (724)
                      ....+|+|
T Consensus       289 ~~~~~~~~  296 (296)
T KOG0502|consen  289 SEKRTPLH  296 (296)
T ss_pred             ccCCCCCC
Confidence            66666654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.81  E-value=4.5e-20  Score=222.82  Aligned_cols=169  Identities=17%  Similarity=0.130  Sum_probs=149.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911           70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID  149 (724)
Q Consensus        70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLh  149 (724)
                      +.++.++||.||..|+.++++.||+. |+|+|.. |.+|.||||+||..|+   .++|++||++|+|+|.+|.+|+||||
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~-d~~G~TpLh~Aa~~g~---~~~v~~Ll~~gadin~~d~~G~TpL~  596 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKA-KLDPDIG-DSKGRTPLHIAASKGY---EDCVLVLLKHACNVHIRDANGNTALW  596 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCh---HHHHHHHHhcCCCCCCcCCCCCCHHH
Confidence            34577999999999999999999999 9999998 9999999999999999   99999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchh----hhhcCCCccccCC
Q 004911          150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSP----SRLVSSPMALKFN  225 (724)
Q Consensus       150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiV----e~Lad~~a~~~~g  225 (724)
                      +|+..|+.++++.|++.    ++.                 .....|.++||.|+..|+.+++    +.+++++..+..|
T Consensus       597 ~A~~~g~~~iv~~L~~~----~~~-----------------~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G  655 (823)
T PLN03192        597 NAISAKHHKIFRILYHF----ASI-----------------SDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQG  655 (823)
T ss_pred             HHHHhCCHHHHHHHHhc----Ccc-----------------cCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCC
Confidence            99999999999887652    210                 1134577999999999999984    5556778889999


Q ss_pred             CCccccccccCCCCCCCCCCccccccccccccc-ccccee
Q 004911          226 DVSFGTGAEKREYPIDPSLPDIKNSIYATDEFR-MFSFKI  264 (724)
Q Consensus       226 ~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g-~~~fkV  264 (724)
                      .||||+|+..|+.+++..|++.|++++..|..+ .++..+
T Consensus       656 ~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l  695 (823)
T PLN03192        656 ATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTEL  695 (823)
T ss_pred             CCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Confidence            999999999999999999999999999988777 555444

>PHA02730 ankyrin-like protein; Provisional

Probab=99.80  E-value=9.3e-20  Score=210.53  Aligned_cols=198  Identities=14%  Similarity=0.051  Sum_probs=153.7

Q ss_pred             CCC-CCCCCCchHHHHHHHcC---CHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcC--CHHHHHH
Q 004911           18 NST-AETEDSFTSMLELASNN---DVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYG--SVDVLKL   91 (724)
Q Consensus        18 di~-~~d~~g~TpLh~AA~~G---~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G--~~evVkl   91 (724)
                      +++ ..|.+|.||||+|+..|   +.++|+.||+ .|++++..             |.+|+||||+|+..+  +.++|++
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs-~GAdin~k-------------D~~G~TPLh~Aa~~~~~~~eIv~~   97 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLS-RGVERLCR-------------NNEGLTPLGVYSKRKYVKSQIVHL   97 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHh-CCCCCccc-------------CCCCCChHHHHHHcCCCcHHHHHH
Confidence            455 78889999999999997   5999999999 89999987             689999999999977  7999999


Q ss_pred             HHhcCCCCc--ccccCCCCCcHHHHHHh--CCCCCHHHHHHHHHH-CCCCCCCCCC-----CCCcHHHHHhcCCCHHHHH
Q 004911           92 ILLHSSADV--NVSCGSDRTTALHCAAS--GGSANVVDVVRLLLS-AGADPDCVDA-----NGHHPIDVIVLPPKLDSMR  161 (724)
Q Consensus        92 LLe~~GADV--N~~~d~~G~TPLH~Aa~--~G~~~~~eiVklLLe-~GAd~n~~D~-----~G~TPLhlAa~~G~~eivk  161 (724)
                      ||+. |+++  +.. +..+.+|||.++.  .++   .++|++||. .++|++....     .|.+|+++|...++.++++
T Consensus        98 Ll~~-~~~~~~~~~-~~~~d~~l~~y~~s~n~~---~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvk  172 (672)
T PHA02730         98 LISS-YSNASNELT-SNINDFDLYSYMSSDNID---LRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLL  172 (672)
T ss_pred             HHhc-CCCCCcccc-cccCCchHHHHHHhcCCc---HHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHH
Confidence            9998 6644  766 7779999999988  777   999999997 6789887643     7899999999999999998


Q ss_pred             HHHHHHHcCCCCchhhhcccccccccccC-CCCCCCCChhchhH------hcCCCch----hhhhcCCCccccCCCCccc
Q 004911          162 AILEEVFGSKNSSVVVASGAEHNLTVSIG-SSNSDYSSPLLTAS------ASGSPPS----PSRLVSSPMALKFNDVSFG  230 (724)
Q Consensus       162 ~LLe~Ll~~ga~~~~~aa~~~~~l~~~in-~~d~~G~TPLh~Aa------~~G~~ei----Ve~Lad~~a~~~~g~TpLh  230 (724)
                      .|++.    |++..     +   ...... ..+..+.|.||+++      ..++.++    +..|++++.++..|.||||
T Consensus       173 lLi~~----g~~v~-----g---~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh  240 (672)
T PHA02730        173 WLLKS----ECYST-----G---YVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQ  240 (672)
T ss_pred             HHHHc----CCccc-----c---cccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            87775    43210     0   000112 22333345556443      4456666    5556677788999999999


Q ss_pred             c--ccccCCCCCCCCCCc
Q 004911          231 T--GAEKREYPIDPSLPD  246 (724)
Q Consensus       231 ~--Aa~~g~~~i~~~L~d  246 (724)
                      +  +...++.++++.|+.
T Consensus       241 ~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        241 YYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             HHHHcCcccHHHHHHHHh
Confidence            4  566677899998887

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=1.8e-19  Score=176.85  Aligned_cols=133  Identities=16%  Similarity=0.166  Sum_probs=114.8

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHH----HHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHH--
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVE----GFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDV--   88 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le----~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~ev--   88 (724)
                      -+.+++..+.++.++||.||+.|+++    ++++|++ .+.+++..             |..|+||||+||.+|+.++  
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~-~g~~~~~~-------------d~~g~t~Lh~Aa~~g~~~~~~   74 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISG-DGHLLHRY-------------DHHGRQCTHMVAWYDRANAVM   74 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhh-cchhhhcc-------------CCCCCcHHHHHHHhCccCHHH
Confidence            34556668888899999999999994    4445666 77777766             6889999999999998654  


Q ss_pred             -HHHHHhcCCCCcccccC-CCCCcHHHHHHhCCCCCHHHHHHHHHH-CCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 004911           89 -LKLILLHSSADVNVSCG-SDRTTALHCAASGGSANVVDVVRLLLS-AGADPDCVDANGHHPIDVIVLPPKLDSMRAILE  165 (724)
Q Consensus        89 -VklLLe~~GADVN~~~d-~~G~TPLH~Aa~~G~~~~~eiVklLLe-~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe  165 (724)
                       |++|++. |+++|.+ + ..|.||||+|+..|+   .+++++|++ .|++++.+|..|.||||+|+..++.++++.|++
T Consensus        75 ~i~~Ll~~-Gadin~~-d~~~g~TpLh~A~~~g~---~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~  149 (166)
T PHA02743         75 KIELLVNM-GADINAR-ELGTGNTLLHIAASTKN---YELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRA  149 (166)
T ss_pred             HHHHHHHc-CCCCCCC-CCCCCCcHHHHHHHhCC---HHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence             8999999 9999998 6 589999999999999   999999996 799999999999999999999999888777665


Q ss_pred             H
Q 004911          166 E  166 (724)
Q Consensus       166 ~  166 (724)
                      .
T Consensus       150 ~  150 (166)
T PHA02743        150 N  150 (166)
T ss_pred             c
Confidence            4

>PHA02730 ankyrin-like protein; Provisional

Probab=99.80  E-value=7.2e-20  Score=211.45  Aligned_cols=225  Identities=15%  Similarity=0.120  Sum_probs=169.0

Q ss_pred             cccccCCCCCCCCCCCchHHHH--HHHcCCHHHHHHHHh-------------------------------cCCCCccccc
Q 004911           11 NTEDMNNNSTAETEDSFTSMLE--LASNNDVEGFKRMLE-------------------------------RDPSSVDEVG   57 (724)
Q Consensus        11 ~~~~m~~di~~~d~~g~TpLh~--AA~~G~le~Vk~LLe-------------------------------~~gadIn~~g   57 (724)
                      .....+++++..|.+|.||||+  |...|+.|+|+.||+                               ..|+|+..+.
T Consensus       220 lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  299 (672)
T PHA02730        220 CLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVN  299 (672)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHH
Confidence            4455789999999999999995  445678999999998                               1355555544


Q ss_pred             cccccccCC-------cccCCCCCh---------------------HHHHHHHcC---CHHHHHHHHhcCCCCcccccCC
Q 004911           58 LWYGRVNGS-------KQMVSEHRT---------------------PLMVAATYG---SVDVLKLILLHSSADVNVSCGS  106 (724)
Q Consensus        58 l~~a~~~g~-------~~~d~~G~T---------------------PLH~AA~~G---~~evVklLLe~~GADVN~~~d~  106 (724)
                      +++..+...       ...+..|.+                     .||.-..++   ++++|++||++ |||+|..  .
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~-GAdIN~k--~  376 (672)
T PHA02730        300 LLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDN-GATMDKT--T  376 (672)
T ss_pred             HHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHC-CCCCCcC--C
Confidence            333322211       113345544                     778777766   59999999999 9999974  6


Q ss_pred             CCCcHHHHHHhCCCC-CHHHHHHHHHHCCC--CCCCCCCCCCcHHHH---HhcCCC----HHH-HHHHHHHHHcCCCCch
Q 004911          107 DRTTALHCAASGGSA-NVVDVVRLLLSAGA--DPDCVDANGHHPIDV---IVLPPK----LDS-MRAILEEVFGSKNSSV  175 (724)
Q Consensus       107 ~G~TPLH~Aa~~G~~-~~~eiVklLLe~GA--d~n~~D~~G~TPLhl---Aa~~G~----~ei-vk~LLe~Ll~~ga~~~  175 (724)
                      .|.||||+|+..++. -..++|++||++||  ++|.+|..|.||||.   |...+.    .+. ...++++|+..|+   
T Consensus       377 ~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GA---  453 (672)
T PHA02730        377 DNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMD---  453 (672)
T ss_pred             CCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhccc---
Confidence            899999999987631 12799999999998  699999999999994   332321    122 2245677777785   


Q ss_pred             hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhh----hcCCCcccc-CCCCcccccccc--CCCCCCCCCCccc
Q 004911          176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALK-FNDVSFGTGAEK--REYPIDPSLPDIK  248 (724)
Q Consensus       176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~----Lad~~a~~~-~g~TpLh~Aa~~--g~~~i~~~L~d~g  248 (724)
                                  +++..|..|.||||+|+..++.++++.    |++++..+. .|.||||.|+..  ++.+++..|+..|
T Consensus       454 ------------DINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~g  521 (672)
T PHA02730        454 ------------DIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYH  521 (672)
T ss_pred             ------------chhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcC
Confidence                        678889999999999999999888544    556667886 599999999874  6788999999998


Q ss_pred             ccccc
Q 004911          249 NSIYA  253 (724)
Q Consensus       249 a~i~~  253 (724)
                      +.+..
T Consensus       522 a~i~~  526 (672)
T PHA02730        522 PTLET  526 (672)
T ss_pred             CCHHH
Confidence            87754

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.79  E-value=1e-19  Score=199.44  Aligned_cols=219  Identities=18%  Similarity=0.211  Sum_probs=176.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC
Q 004911           28 TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSD  107 (724)
Q Consensus        28 TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~  107 (724)
                      -.++.|+..|+++-|+.||. .|+.+|..+             .+|.|+||-||.-.+.+||++|+++ |++||.. |..
T Consensus        42 a~~l~A~~~~d~~ev~~ll~-~ga~~~~~n-------------~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~-d~e  105 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLN-RGASPNLCN-------------VDGLTALHQACIDDNLEMVKFLVEN-GANVNAQ-DNE  105 (527)
T ss_pred             HHHHhccccccHHHHHHHhc-cCCCccccC-------------CccchhHHHHHhcccHHHHHHHHHh-cCCcccc-ccc
Confidence            46788999999999999999 778887764             8999999999999999999999999 9999999 999


Q ss_pred             CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHH-HcCCC------Cchhhhcc
Q 004911          108 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEV-FGSKN------SSVVVASG  180 (724)
Q Consensus       108 G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~L-l~~ga------~~~~~aa~  180 (724)
                      ||||||.|+..|+   +.|+++||.+||++..++..|..|+.++......+++...+... +..++      .....+..
T Consensus       106 ~wtPlhaaascg~---~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~  182 (527)
T KOG0505|consen  106 GWTPLHAAASCGY---LNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDAR  182 (527)
T ss_pred             cCCcchhhccccc---HHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHH
Confidence            9999999999999   99999999999999999999999999988765555544333211 11000      00000000


Q ss_pred             cccccccccCCCCCCCCChhchhHhcCCCchhh----hhcCCCccccCCCCccccccccCCCCCCCCCCccccccccccc
Q 004911          181 AEHNLTVSIGSSNSDYSSPLLTASASGSPPSPS----RLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDE  256 (724)
Q Consensus       181 ~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe----~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~  256 (724)
                      ...+.....+..+..|.|.||.|+.+|+.++++    .+.+++++|.+|+||||.|+..|..+++..|+++|++++....
T Consensus       183 q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~  262 (527)
T KOG0505|consen  183 QWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTK  262 (527)
T ss_pred             HHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhh
Confidence            000011244555667999999999999999844    4557779999999999999999999999999999999999888


Q ss_pred             cccccceee
Q 004911          257 FRMFSFKIR  265 (724)
Q Consensus       257 ~g~~~fkV~  265 (724)
                      .+.+++.+.
T Consensus       263 ~g~~p~dv~  271 (527)
T KOG0505|consen  263 MGETPLDVA  271 (527)
T ss_pred             cCCCCccch
Confidence            888887774

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.78  E-value=6.4e-19  Score=210.82  Aligned_cols=191  Identities=17%  Similarity=0.101  Sum_probs=142.1

Q ss_pred             CCCCCCCCCCCchHHH-HHHHcCCHHHHHHHHhcCCC--Ccccccccccccc---------------CC-----------
Q 004911           16 NNNSTAETEDSFTSML-ELASNNDVEGFKRMLERDPS--SVDEVGLWYGRVN---------------GS-----------   66 (724)
Q Consensus        16 ~~di~~~d~~g~TpLh-~AA~~G~le~Vk~LLe~~ga--dIn~~gl~~a~~~---------------g~-----------   66 (724)
                      +.++|..|..|.|||| .|+..++.++++.|++ .++  ......|+++...               +.           
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~-~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~  120 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLN-LSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQ  120 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHh-CCCCCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccc
Confidence            5678888999999999 8888889999999998 553  2222213333220               00           


Q ss_pred             -cccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC-------------CCCCcHHHHHHhCCCCCHHHHHHHHHH
Q 004911           67 -KQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG-------------SDRTTALHCAASGGSANVVDVVRLLLS  132 (724)
Q Consensus        67 -~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d-------------~~G~TPLH~Aa~~G~~~~~eiVklLLe  132 (724)
                       ......|.||||+||..|+.++|++||++ |||+|..+.             ..|.||||+|+..|+   .+++++|++
T Consensus       121 ~~~~~~~G~TpLhlAa~~~~~eiVklLL~~-GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~---~~iv~lLl~  196 (743)
T TIGR00870       121 YTSEFTPGITALHLAAHRQNYEIVKLLLER-GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS---PSIVALLSE  196 (743)
T ss_pred             cccccCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCC---HHHHHHHhc
Confidence             01124699999999999999999999999 999997632             358999999999999   999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHhcCC-----CHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcC
Q 004911          133 AGADPDCVDANGHHPIDVIVLPP-----KLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASG  207 (724)
Q Consensus       133 ~GAd~n~~D~~G~TPLhlAa~~G-----~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G  207 (724)
                      +|+|++.+|..|+||||+|+..+     +.+....+.+.++..++..        .......+..|.+|.||||+|+..|
T Consensus       197 ~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~--------~~~~el~~i~N~~g~TPL~~A~~~g  268 (743)
T TIGR00870       197 DPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL--------RDSKELEVILNHQGLTPLKLAAKEG  268 (743)
T ss_pred             CCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc--------CChHhhhhhcCCCCCCchhhhhhcC
Confidence            99999999999999999999986     3333333333333222110        0111123456889999999999999


Q ss_pred             CCchhhhhcCCC
Q 004911          208 SPPSPSRLVSSP  219 (724)
Q Consensus       208 ~~eiVe~Lad~~  219 (724)
                      +.++++.++...
T Consensus       269 ~~~l~~lLL~~~  280 (743)
T TIGR00870       269 RIVLFRLKLAIK  280 (743)
T ss_pred             CccHHHHHHHHH
Confidence            999998888754

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1.8e-18  Score=184.53  Aligned_cols=160  Identities=18%  Similarity=0.128  Sum_probs=127.3

Q ss_pred             CCCCCCCch-HHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911           20 TAETEDSFT-SMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA   98 (724)
Q Consensus        20 ~~~d~~g~T-pLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA   98 (724)
                      ...|++++| +||.|+..|+.++|+.||+ .|+++|...         ...+..|.||||+|+..|+.+++++|+++ ||
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~-~GAdiN~~~---------~~sd~~g~TpLh~Aa~~~~~eivklLL~~-GA   94 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILK-LGADPEAPF---------PLSENSKTNPLIYAIDCDNDDAAKLLIRY-GA   94 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHH-CCCCccccC---------cccCCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence            346677776 5555666799999999999 899998751         00135899999999999999999999999 99


Q ss_pred             CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhh
Q 004911           99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVA  178 (724)
Q Consensus        99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~a  178 (724)
                      |+|...+..|.||||+|+..|+   .+++++|+++||+++.+|..|.||||+|+..++.+++..+.      +.      
T Consensus        95 DVN~~~~~~g~TpLh~Aa~~~~---~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~------~~------  159 (300)
T PHA02884         95 DVNRYAEEAKITPLYISVLHGC---LKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC------DN------  159 (300)
T ss_pred             CcCcccCCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc------CC------
Confidence            9998635689999999999999   99999999999999999999999999999988876543221      11      


Q ss_pred             cccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc
Q 004911          179 SGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM  220 (724)
Q Consensus       179 a~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a  220 (724)
                                  ..+..+.+|++.+   ++.++++.++...+
T Consensus       160 ------------~~~~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        160 ------------EISNFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             ------------cccccccChhhhh---ccHHHHHHHHHHHH
Confidence                        1244567777764   35677777776664

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.77  E-value=4.7e-19  Score=171.12  Aligned_cols=134  Identities=15%  Similarity=0.110  Sum_probs=106.4

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCH---HHHHHHHhc
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSV---DVLKLILLH   95 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~---evVklLLe~   95 (724)
                      .+..|.+|.||||+||..|++..  .++. .+...+...      ......+.+|+||||+||..|+.   +++++|++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~--l~~~-~~~~~~~~~------~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~   80 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTD--LLAF-KNAISDENR------YLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW   80 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHH--HHHH-HHHhcchhH------HHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc
Confidence            45678889999999999998532  2222 111111100      00012267899999999999987   468999999


Q ss_pred             CCCCcccccC-CCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911           96 SSADVNVSCG-SDRTTALHCAASGGSANVVDVVRLLLSA-GADPDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus        96 ~GADVN~~~d-~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                       |+++|.+ + .+|.||||+|+..|+   .+++++||.. |++++.+|..|.||||+|+..|+.++++.|++.
T Consensus        81 -gadin~~-~~~~g~T~Lh~A~~~~~---~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~  148 (154)
T PHA02736         81 -GADINGK-ERVFGNTPLHIAVYTQN---YELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAK  148 (154)
T ss_pred             -CCCcccc-CCCCCCcHHHHHHHhCC---HHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence             9999998 6 599999999999999   9999999985 999999999999999999999998888877664

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.75  E-value=5.4e-18  Score=166.49  Aligned_cols=134  Identities=13%  Similarity=0.123  Sum_probs=113.4

Q ss_pred             cCCCCChHHHHHHHcCCH----HHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CC
Q 004911           69 MVSEHRTPLMVAATYGSV----DVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD-AN  143 (724)
Q Consensus        69 ~d~~G~TPLH~AA~~G~~----evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~  143 (724)
                      .+.++.++||.||+.|++    +++++|++. |++++.. |.+|+||||+|+..|+.+.++++++|+++|+++|.+| ..
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~-d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~   93 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRY-DHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGT   93 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhcc-CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467889999999999998    667788888 9999988 9999999999999998444566899999999999998 58


Q ss_pred             CCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccc
Q 004911          144 GHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMAL  222 (724)
Q Consensus       144 G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~  222 (724)
                      |.||||+|+..|+.++++.|++   +.|+               +++..|..|.||||+|+..++.+++++|+..++..
T Consensus        94 g~TpLh~A~~~g~~~iv~~Ll~---~~ga---------------d~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~  154 (166)
T PHA02743         94 GNTLLHIAASTKNYELAEWLCR---QLGV---------------NLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC  154 (166)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHh---ccCC---------------CccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999888887664   1232               45677889999999999999999988877666443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.75  E-value=5.8e-18  Score=162.13  Aligned_cols=147  Identities=22%  Similarity=0.259  Sum_probs=122.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC
Q 004911           27 FTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGS  106 (724)
Q Consensus        27 ~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~  106 (724)
                      .--++.|+..+.+..|+.||++....||..             |.+|.||||-|+.+|+++||+.||.. ||+++.+ ..
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtr-------------D~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~-T~  128 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTR-------------DEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAK-TN  128 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhcccccccc-------------ccccccHHHHHHhcCchHHHHHHHHc-cCCcccc-cc
Confidence            356889999999999999999877778877             79999999999999999999999999 9999999 99


Q ss_pred             CCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccc
Q 004911          107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLT  186 (724)
Q Consensus       107 ~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~  186 (724)
                      .||||||-||...+   .+|+.+||++|||+|+......||||+|+...+...   .+++|+....              
T Consensus       129 ~GWTPLhSAckWnN---~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~---t~~~Ll~dry--------------  188 (228)
T KOG0512|consen  129 EGWTPLHSACKWNN---FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRD---TLELLLHDRY--------------  188 (228)
T ss_pred             cCccchhhhhcccc---hhHHHHHHhccCcccccccccchhhHHhhcccchHH---HHHHHhhccc--------------
Confidence            99999999999999   999999999999999999999999999998665432   2233222210              


Q ss_pred             cccCCCCCCCCChhchhHhcCC
Q 004911          187 VSIGSSNSDYSSPLLTASASGS  208 (724)
Q Consensus       187 ~~in~~d~~G~TPLh~Aa~~G~  208 (724)
                      +.....+..+.||+.+|-+.+-
T Consensus       189 i~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  189 IHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             cChhhhcCccchHHHHHHHhhh
Confidence            1122345677899988877653

>PHA02741 hypothetical protein; Provisional

Probab=99.75  E-value=5.3e-18  Score=166.80  Aligned_cols=132  Identities=18%  Similarity=0.186  Sum_probs=112.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhc-----CCCCcccccCCCCCcHHHHHHhCCCCC-HHHHHHHHHHCCCCCCCCCC-
Q 004911           70 VSEHRTPLMVAATYGSVDVLKLILLH-----SSADVNVSCGSDRTTALHCAASGGSAN-VVDVVRLLLSAGADPDCVDA-  142 (724)
Q Consensus        70 d~~G~TPLH~AA~~G~~evVklLLe~-----~GADVN~~~d~~G~TPLH~Aa~~G~~~-~~eiVklLLe~GAd~n~~D~-  142 (724)
                      +.+|.||||+||..|+.++|++|+..     .|++++.+ |..|.||||+|+..|+.. +.+++++|+++|+++|.+|. 
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~   96 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT-DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEML   96 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc-CCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcC
Confidence            46899999999999999999998642     26899998 999999999999999821 13889999999999999985 


Q ss_pred             CCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc
Q 004911          143 NGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM  220 (724)
Q Consensus       143 ~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a  220 (724)
                      +|+||||+|+..++.++++.|++.   .++               +++..|.+|.||||+|+..++.++++.|....+
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~---~g~---------------~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQ---PGI---------------DLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhC---CCC---------------CCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999999988877652   221               456778899999999999999999888876553

>PHA02792 ankyrin-like protein; Provisional

Probab=99.74  E-value=2.1e-17  Score=189.38  Aligned_cols=200  Identities=11%  Similarity=0.004  Sum_probs=153.3

Q ss_pred             CCCCCCCCCCchHHHHHHHcC-------CHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcC--CHH
Q 004911           17 NNSTAETEDSFTSMLELASNN-------DVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYG--SVD   87 (724)
Q Consensus        17 ~di~~~d~~g~TpLh~AA~~G-------~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G--~~e   87 (724)
                      -.++..+..|.||||+|+..+       +.|+++.||+ +|++++..             |..|.||||+|+.+.  ..|
T Consensus       166 ~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~-~g~~~~~~-------------d~~g~t~l~~~~~~~~i~~e  231 (631)
T PHA02792        166 YTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLIS-HEKEMRYY-------------TYREHTTLYYYVDKCDIKRE  231 (631)
T ss_pred             cccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHh-CCCCcCcc-------------CCCCChHHHHHHHcccchHH
Confidence            346688888999999999999       8999999999 88888876             577888888888887  666


Q ss_pred             HHHHHHhcC-----------------------------------------------------------------------
Q 004911           88 VLKLILLHS-----------------------------------------------------------------------   96 (724)
Q Consensus        88 vVklLLe~~-----------------------------------------------------------------------   96 (724)
                      ++++|++..                                                                       
T Consensus       232 i~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~  311 (631)
T PHA02792        232 IFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLS  311 (631)
T ss_pred             HHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHH
Confidence            666665420                                                                       


Q ss_pred             -------------------CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCC--CcHHHHHhcCC
Q 004911           97 -------------------SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG--HHPIDVIVLPP  155 (724)
Q Consensus        97 -------------------GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G--~TPLhlAa~~G  155 (724)
                                         |++++   ......++|.||..|+   .++|++|+++|||++.+|.+|  .||||+|+...
T Consensus       312 ~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn---~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~  385 (631)
T PHA02792        312 EYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRD---PKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIH  385 (631)
T ss_pred             HHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCC---HHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhc
Confidence                               22221   1135667899999999   999999999999999999875  59999877655


Q ss_pred             CHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhh----hcCCCccccCCCCcccc
Q 004911          156 KLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKFNDVSFGT  231 (724)
Q Consensus       156 ~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~----Lad~~a~~~~g~TpLh~  231 (724)
                      .. .+..+++.++..|+               +++.+|..|.||||.|+..++.+++++    |++.+.++..|.|||++
T Consensus       386 ~~-~v~~IlklLIs~GA---------------DIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~  449 (631)
T PHA02792        386 ES-DVLSILKLCKPYID---------------DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGI  449 (631)
T ss_pred             cH-hHHHHHHHHHhcCC---------------ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            43 34567778888885               677889999999999999999988554    55667888999999999


Q ss_pred             ccc---cCC-------CCCCCCCCccccccc
Q 004911          232 GAE---KRE-------YPIDPSLPDIKNSIY  252 (724)
Q Consensus       232 Aa~---~g~-------~~i~~~L~d~ga~i~  252 (724)
                      |..   ..+       ..+...|+..+..+.
T Consensus       450 A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        450 CVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            965   221       334555666665543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.73  E-value=3.6e-18  Score=192.76  Aligned_cols=214  Identities=17%  Similarity=0.162  Sum_probs=178.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCcccccccc--ccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004911           28 TSMLELASNNDVEGFKRMLERDPSSVDEVGLWY--GRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG  105 (724)
Q Consensus        28 TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~--a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d  105 (724)
                      +-|..|++.|+++.+..||+..+.   ..+...  -+...++..|.+|.|+||.||.+|+.+++++|+++ .+-++.. +
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~---r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~-ea~ldl~-d   79 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKG---RSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY-EALLDLC-D   79 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCC---CCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcc-hhhhhhh-h
Confidence            568899999999999999995433   333222  23345566678999999999999999999999999 8888887 8


Q ss_pred             CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccc
Q 004911          106 SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNL  185 (724)
Q Consensus       106 ~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l  185 (724)
                      ..|.+|||+|++.|+   .++||+||.++..+|..+..|.||||.|+.+|+.+++.+|+.    .|+++.          
T Consensus        80 ~kg~~plhlaaw~g~---~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~----~~adp~----------  142 (854)
T KOG0507|consen   80 TKGILPLHLAAWNGN---LEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLK----KNADPF----------  142 (854)
T ss_pred             ccCcceEEehhhcCc---chHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHh----cCCCcc----------
Confidence            999999999999999   999999999999999999999999999999999988876655    454333          


Q ss_pred             ccccCCCCCCCCChhchhHhcCCCchhhhhcCCC------------ccccCCCCccccccccCCCCCCCCCCcccccccc
Q 004911          186 TVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP------------MALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYA  253 (724)
Q Consensus       186 ~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~------------a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~  253 (724)
                           .+|..+.|+|.+|++.|..++|+.|+..+            .+...+.+|+|.|++.|+.++...|+..|-+++.
T Consensus       143 -----i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~  217 (854)
T KOG0507|consen  143 -----IRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINY  217 (854)
T ss_pred             -----ccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccc
Confidence                 45788999999999999999988877543            3445577899999999999999999999999998


Q ss_pred             ccccccccceeeccC
Q 004911          254 TDEFRMFSFKIRPCS  268 (724)
Q Consensus       254 ~D~~g~~~fkV~pCs  268 (724)
                      ..+.|..-..-+.|.
T Consensus       218 ~t~~gtalheaalcg  232 (854)
T KOG0507|consen  218 TTEDGTALHEAALCG  232 (854)
T ss_pred             ccccchhhhhHhhcC
Confidence            887765444444454

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=1.7e-17  Score=169.42  Aligned_cols=138  Identities=23%  Similarity=0.280  Sum_probs=122.3

Q ss_pred             cccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHH
Q 004911           11 NTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLK   90 (724)
Q Consensus        11 ~~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVk   90 (724)
                      -..+-++|.|..|.+|++|||+||+.|+..+|+.||. .|+.||..+             ....||||+||..|+-+||+
T Consensus        19 wld~tehdln~gddhgfsplhwaakegh~aivemll~-rgarvn~tn-------------mgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen   19 WLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLS-RGARVNSTN-------------MGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             EecCcccccccccccCcchhhhhhhcccHHHHHHHHh-ccccccccc-------------CCCCcchhhhhhcccHHHHH
Confidence            4566789999999999999999999999999999999 899999874             45679999999999999999


Q ss_pred             HHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcC
Q 004911           91 LILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGS  170 (724)
Q Consensus        91 lLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~  170 (724)
                      .||+. .+|||+. +..|+|||||||..|.   ..|.+-|+..||-+++.+++|.|||..|--    .+.+.|++..-+.
T Consensus        85 kll~~-kadvnav-nehgntplhyacfwgy---dqiaedli~~ga~v~icnk~g~tpldkakp----~l~~~l~e~aek~  155 (448)
T KOG0195|consen   85 KLLSR-KADVNAV-NEHGNTPLHYACFWGY---DQIAEDLISCGAAVNICNKKGMTPLDKAKP----MLKNTLLEIAEKH  155 (448)
T ss_pred             HHHHH-hcccchh-hccCCCchhhhhhhcH---HHHHHHHHhccceeeecccCCCCchhhhch----HHHHHHHHHHHHh
Confidence            99999 9999999 9999999999999999   899999999999999999999999998742    3444555544444


Q ss_pred             C
Q 004911          171 K  171 (724)
Q Consensus       171 g  171 (724)
                      |
T Consensus       156 g  156 (448)
T KOG0195|consen  156 G  156 (448)
T ss_pred             C
Confidence            4

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.72  E-value=4.9e-18  Score=203.26  Aligned_cols=217  Identities=18%  Similarity=0.146  Sum_probs=153.0

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcC--CCCccccccccccccCCcccCCCCChHHH-HHHHcCCHHHHHHHHhcCCCCc
Q 004911           24 EDSFTSMLELASNNDVEGFKRMLERD--PSSVDEVGLWYGRVNGSKQMVSEHRTPLM-VAATYGSVDVLKLILLHSSADV  100 (724)
Q Consensus        24 ~~g~TpLh~AA~~G~le~Vk~LLe~~--gadIn~~gl~~a~~~g~~~~d~~G~TPLH-~AA~~G~~evVklLLe~~GADV  100 (724)
                      .++.+.|+.||..|+++.|+.+++ +  +.++|..             |..|+|||| .|+.+++.+++++|+++ |+  
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~-~~~~~~in~~-------------d~~G~t~Lh~~A~~~~~~eiv~lLl~~-g~--   77 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLE-EPKKLNINCP-------------DRLGRSALFVAAIENENLELTELLLNL-SC--   77 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhc-cccccCCCCc-------------CccchhHHHHHHHhcChHHHHHHHHhC-CC--
Confidence            466799999999999999999999 5  6777765             688999999 88899999999999998 76  


Q ss_pred             ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC------CC----CCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcC
Q 004911          101 NVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD------PD----CVDANGHHPIDVIVLPPKLDSMRAILEEVFGS  170 (724)
Q Consensus       101 N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd------~n----~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~  170 (724)
                        . +..|.||||.|+.++.....+++++|+..+.+      ++    ..+..|.||||+|+..|+.++++.|++.    
T Consensus        78 --~-~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~----  150 (743)
T TIGR00870        78 --R-GAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER----  150 (743)
T ss_pred             --C-CCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhC----
Confidence              3 77899999999985442224555666655532      11    1235799999999999999998877764    


Q ss_pred             CCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCC-------
Q 004911          171 KNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYP-------  239 (724)
Q Consensus       171 ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~-------  239 (724)
                      |++......... ............|.||||.|+..|+.++++.++    |.+.++..|+||||+|+..++..       
T Consensus       151 GAdv~~~~~~~~-~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~  229 (743)
T TIGR00870       151 GASVPARACGDF-FVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELS  229 (743)
T ss_pred             CCCCCcCcCCch-hhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHH
Confidence            443331111100 000011112356899999999999999966555    56678889999999998886321       


Q ss_pred             --CCCCCCcccccc-------ccccccccccceee
Q 004911          240 --IDPSLPDIKNSI-------YATDEFRMFSFKIR  265 (724)
Q Consensus       240 --i~~~L~d~ga~i-------~~~D~~g~~~fkV~  265 (724)
                        +...+.+.++..       ...|..|.++++.+
T Consensus       230 ~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A  264 (743)
T TIGR00870       230 CQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLA  264 (743)
T ss_pred             HHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhh
Confidence              122233333322       45677888888775

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.71  E-value=7.2e-17  Score=172.31  Aligned_cols=155  Identities=17%  Similarity=0.134  Sum_probs=125.2

Q ss_pred             ccCCCCCh-HHHHHHHcCCHHHHHHHHhcCCCCccccc---CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCC-CC
Q 004911           68 QMVSEHRT-PLMVAATYGSVDVLKLILLHSSADVNVSC---GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCV-DA  142 (724)
Q Consensus        68 ~~d~~G~T-PLH~AA~~G~~evVklLLe~~GADVN~~~---d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~-D~  142 (724)
                      ..|..|+| +||.|+..|+.++|++||++ |||+|...   +..|.||||+|+..|+   .+++++|+++|||+|.+ +.
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g~TpLh~Aa~~~~---~eivklLL~~GADVN~~~~~  102 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKL-GADPEAPFPLSENSKTNPLIYAIDCDN---DDAAKLLIRYGADVNRYAEE  102 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHC-CCCccccCcccCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcCcccCC
Confidence            34667776 56777788999999999999 99999862   3589999999999999   99999999999999996 46


Q ss_pred             CCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccc
Q 004911          143 NGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMAL  222 (724)
Q Consensus       143 ~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~  222 (724)
                      .|.||||+|+..++.++++.|++    .|+               +++..|..|.||||+|+..++.+++..+.+.+ .+
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~----~GA---------------din~kd~~G~TpL~~A~~~~~~~~~~~~~~~~-~~  162 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLS----YGA---------------DINIQTNDMVTPIELALMICNNFLAFMICDNE-IS  162 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH----CCC---------------CCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc-cc
Confidence            89999999999999888887665    343               56677899999999999999888877776665 56


Q ss_pred             cCCCCccccccccCCCCCCCCCCcccc
Q 004911          223 KFNDVSFGTGAEKREYPIDPSLPDIKN  249 (724)
Q Consensus       223 ~~g~TpLh~Aa~~g~~~i~~~L~d~ga  249 (724)
                      ..+.+|++++   .+.++.+.|+.++.
T Consensus       163 ~~~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        163 NFYKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             ccccChhhhh---ccHHHHHHHHHHHH
Confidence            6677787754   24555565554433

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.71  E-value=2e-17  Score=181.63  Aligned_cols=187  Identities=20%  Similarity=0.271  Sum_probs=154.3

Q ss_pred             cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911           13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI   92 (724)
Q Consensus        13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL   92 (724)
                      ...+.+++..+.+|.|+||.++...+.++|++|++ .|++||..             |.+|+||||.|+..|++.+|++|
T Consensus        60 l~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e-~ga~Vn~~-------------d~e~wtPlhaaascg~~~i~~~l  125 (527)
T KOG0505|consen   60 LNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVE-NGANVNAQ-------------DNEGWTPLHAAASCGYLNIVEYL  125 (527)
T ss_pred             hccCCCccccCCccchhHHHHHhcccHHHHHHHHH-hcCCcccc-------------ccccCCcchhhcccccHHHHHHH
Confidence            34567788999999999999999999999999999 89999987             79999999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcHHHHHHh-------------CCCC----------CHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911           93 LLHSSADVNVSCGSDRTTALHCAAS-------------GGSA----------NVVDVVRLLLSAGADPDCVDANGHHPID  149 (724)
Q Consensus        93 Le~~GADVN~~~d~~G~TPLH~Aa~-------------~G~~----------~~~eiVklLLe~GAd~n~~D~~G~TPLh  149 (724)
                      |.+ ||++-.. +.+|..|+-.|..             .|-.          ..++=++..+..|.+.++.+..|.|.||
T Consensus       126 i~~-gA~~~av-Nsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lH  203 (527)
T KOG0505|consen  126 IQH-GANLLAV-NSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALH  203 (527)
T ss_pred             HHh-hhhhhhc-cCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHH
Confidence            999 9998888 7888777644321             1111          0122345556689999999989999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCch----hhhhcCCCccccCC
Q 004911          150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPS----PSRLVSSPMALKFN  225 (724)
Q Consensus       150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~ei----Ve~Lad~~a~~~~g  225 (724)
                      +|+..|..++.+.|++.    |               +.++..|.+|+||||.|+..|..++    +++|++..+..+.|
T Consensus       204 vAaa~Gy~e~~~lLl~a----g---------------~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g  264 (527)
T KOG0505|consen  204 VAAANGYTEVAALLLQA----G---------------YSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMG  264 (527)
T ss_pred             HHHhhhHHHHHHHHHHh----c---------------cCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcC
Confidence            99999998888877764    2               2566789999999999999999988    55556777888889


Q ss_pred             CCccccccc
Q 004911          226 DVSFGTGAE  234 (724)
Q Consensus       226 ~TpLh~Aa~  234 (724)
                      .||+.+|.+
T Consensus       265 ~~p~dv~de  273 (527)
T KOG0505|consen  265 ETPLDVADE  273 (527)
T ss_pred             CCCccchhh
Confidence            999998855

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.70  E-value=2.6e-17  Score=158.88  Aligned_cols=131  Identities=17%  Similarity=0.196  Sum_probs=104.9

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCC--C-----cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC
Q 004911           69 MVSEHRTPLMVAATYGSVDVLKLILLHSSA--D-----VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD  141 (724)
Q Consensus        69 ~d~~G~TPLH~AA~~G~~evVklLLe~~GA--D-----VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D  141 (724)
                      .|.+|.||||+||..|++  +++|+.. ++  +     ++.. |.+|.||||+|+..|+.+..+++++|+++|++++.+|
T Consensus        13 ~d~~g~tpLh~A~~~g~~--~~l~~~~-~~~~~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736         13 PDIEGENILHYLCRNGGV--TDLLAFK-NAISDENRYLVLEY-NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             cCCCCCCHHHHHHHhCCH--HHHHHHH-HHhcchhHHHHHHh-cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            367899999999999984  4444332 22  2     3344 8899999999999998444468999999999999998


Q ss_pred             -CCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc
Q 004911          142 -ANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM  220 (724)
Q Consensus       142 -~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a  220 (724)
                       ..|+||||+|+..|+.++++.|++   ..++               +++..|..|.||||+|+..|+.++++.|+..++
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~---~~g~---------------d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCN---QPGV---------------NMEILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHh---CCCC---------------CCccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence             599999999999999888876654   1232               566778999999999999999999988887765


Q ss_pred             c
Q 004911          221 A  221 (724)
Q Consensus       221 ~  221 (724)
                      .
T Consensus       151 ~  151 (154)
T PHA02736        151 Q  151 (154)
T ss_pred             C
Confidence            4

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.69  E-value=9.9e-17  Score=168.57  Aligned_cols=134  Identities=25%  Similarity=0.379  Sum_probs=120.8

Q ss_pred             ccCCCCCCCCCCCchHHHHHHH-----cCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHH
Q 004911           14 DMNNNSTAETEDSFTSMLELAS-----NNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDV   88 (724)
Q Consensus        14 ~m~~di~~~d~~g~TpLh~AA~-----~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~ev   88 (724)
                      --.++++..+.-|+||+++||.     ..+.++|..|+.-  .+||.+.            ...|+|+||+|+.+|++++
T Consensus       290 SgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m--gnVNaKA------------sQ~gQTALMLAVSHGr~d~  355 (452)
T KOG0514|consen  290 SGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM--GDVNAKA------------SQHGQTALMLAVSHGRVDM  355 (452)
T ss_pred             cCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc--cCcchhh------------hhhcchhhhhhhhcCcHHH
Confidence            3467899999999999999987     4688999999983  3566653            4689999999999999999


Q ss_pred             HHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911           89 LKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA-GADPDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus        89 VklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      |+.||.. |||||.+ |.+|.|+|+|||..||   .|||++||.. ++|+...|.+|-|+|.+|...|+.+|.-.|..+
T Consensus       356 vk~LLac-gAdVNiQ-DdDGSTALMCA~EHGh---kEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  356 VKALLAC-GADVNIQ-DDDGSTALMCAAEHGH---KEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             HHHHHHc-cCCCccc-cCCccHHHhhhhhhCh---HHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            9999998 9999999 9999999999999999   9999999998 899999999999999999999999998777654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.68  E-value=1.6e-16  Score=152.25  Aligned_cols=122  Identities=24%  Similarity=0.290  Sum_probs=110.2

Q ss_pred             CCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 004911           18 NSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS   97 (724)
Q Consensus        18 di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G   97 (724)
                      -+|.+|++|+||||.|+.+|++++|+.||. .|++.+.+             ..+|+||||-||...+.+|+-+||.+ |
T Consensus        89 ~vNtrD~D~YTpLHRAaYn~h~div~~ll~-~gAn~~a~-------------T~~GWTPLhSAckWnN~~va~~LLqh-g  153 (228)
T KOG0512|consen   89 HVNTRDEDEYTPLHRAAYNGHLDIVHELLL-SGANKEAK-------------TNEGWTPLHSACKWNNFEVAGRLLQH-G  153 (228)
T ss_pred             cccccccccccHHHHHHhcCchHHHHHHHH-ccCCcccc-------------cccCccchhhhhcccchhHHHHHHhc-c
Confidence            389999999999999999999999999999 89999887             58999999999999999999999999 9


Q ss_pred             CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHhcCCCH
Q 004911           98 ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA-GADPDCVDANGHHPIDVIVLPPKL  157 (724)
Q Consensus        98 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~n~~D~~G~TPLhlAa~~G~~  157 (724)
                      +|||+. .....||||+||...+  ....+++||.. +.++...+..+.||+.+|-+.+-.
T Consensus       154 aDVnA~-t~g~ltpLhlaa~~rn--~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  154 ADVNAQ-TKGLLTPLHLAAGNRN--SRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             Cccccc-ccccchhhHHhhcccc--hHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            999999 8888999999998765  26677777765 889999999999999999886543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.67  E-value=3.9e-16  Score=136.37  Aligned_cols=89  Identities=35%  Similarity=0.523  Sum_probs=80.1

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCC
Q 004911           30 MLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRT  109 (724)
Q Consensus        30 Lh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~  109 (724)
                      ||+||..|++++++.|++ .+.+++.                 |+||||+||.+|+.+++++|+++ |++++.. +..|+
T Consensus         1 L~~A~~~~~~~~~~~ll~-~~~~~~~-----------------~~~~l~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~   60 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE-KGADINL-----------------GNTALHYAAENGNLEIVKLLLEN-GADINSQ-DKNGN   60 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH-TTSTTTS-----------------SSBHHHHHHHTTTHHHHHHHHHT-TTCTT-B-STTSS
T ss_pred             CHHHHHcCCHHHHHHHHH-CcCCCCC-----------------CCCHHHHHHHcCCHHHHHHHHHh-ccccccc-CCCCC
Confidence            799999999999999999 6665542                 78999999999999999999999 9999999 89999


Q ss_pred             cHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC
Q 004911          110 TALHCAASGGSANVVDVVRLLLSAGADPDCVD  141 (724)
Q Consensus       110 TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D  141 (724)
                      ||||+|+..|+   .+++++|+++|++++.+|
T Consensus        61 t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   61 TALHYAAENGN---LEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             BHHHHHHHTTH---HHHHHHHHHTTT-TTSS-
T ss_pred             CHHHHHHHcCC---HHHHHHHHHcCCCCCCcC
Confidence            99999999999   999999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.65  E-value=7.8e-17  Score=185.56  Aligned_cols=233  Identities=15%  Similarity=0.187  Sum_probs=147.2

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL   94 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe   94 (724)
                      -++++..+|+.|++||.+|+..||..+|+.||+ .-++|+...            |..+.|+|-+||..|..++|++||.
T Consensus       779 rganiehrdkkgf~plImaatagh~tvV~~llk-~ha~veaQs------------drtkdt~lSlacsggr~~vvelLl~  845 (2131)
T KOG4369|consen  779 RGANIEHRDKKGFVPLIMAATAGHITVVQDLLK-AHADVEAQS------------DRTKDTMLSLACSGGRTRVVELLLN  845 (2131)
T ss_pred             hcccccccccccchhhhhhcccCchHHHHHHHh-hhhhhhhhc------------ccccCceEEEecCCCcchHHHHHHH
Confidence            346666777777777777777777777777777 556666543            5666677777777777777777777


Q ss_pred             cCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC--CCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911           95 HSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD--ANGHHPIDVIVLPPKLDSMRAILEEVFGSKN  172 (724)
Q Consensus        95 ~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D--~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga  172 (724)
                      + |++-..+ +....|||-+|...|.   ++||++||.+|+.||.+.  +.|-.||++|..+|+.+.++.|++..-+.++
T Consensus       846 ~-gankehr-nvsDytPlsla~Sggy---~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNa  920 (2131)
T KOG4369|consen  846 A-GANKEHR-NVSDYTPLSLARSGGY---TKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINA  920 (2131)
T ss_pred             h-hcccccc-chhhcCchhhhcCcch---HHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhcc
Confidence            6 6666665 6666677777777777   777777777776666653  3566777777777776666666654333221


Q ss_pred             -------Cchhhhcccccc--------cccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccc------cCCCCcccc
Q 004911          173 -------SSVVVASGAEHN--------LTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMAL------KFNDVSFGT  231 (724)
Q Consensus       173 -------~~~~~aa~~~~~--------l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~------~~g~TpLh~  231 (724)
                             +.+.+++.....        ...++..+.+.|.|||+.++..|++++-..|++.++..      ...+|+|.+
T Consensus       921 qIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti 1000 (2131)
T KOG4369|consen  921 QIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTI 1000 (2131)
T ss_pred             ccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCcccee
Confidence                   111111111110        01234455677888888888888877744444444322      235677777


Q ss_pred             ccccCCCCCCCCCCccccccccccccccccceee
Q 004911          232 GAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       232 Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      ++.+|+...++.|+...+.++..++.|.+.+-.+
T Consensus      1001 ~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla 1034 (2131)
T KOG4369|consen 1001 PANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLA 1034 (2131)
T ss_pred             ecCCCchhhhHHhhCCccceecccCCCCcccchh
Confidence            7777777777777777777777777776665543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.65  E-value=2.5e-15  Score=135.86  Aligned_cols=124  Identities=37%  Similarity=0.545  Sum_probs=113.8

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 004911           21 AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADV  100 (724)
Q Consensus        21 ~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADV  100 (724)
                      ..+.+|.||||.|+..|+.++++.|++ .+.+++..             +..|.||||+|+..++.+++++|++. |+++
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~-~~~~~~~~-------------~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~   66 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAK-------------DNDGRTPLHLAAKNGHLEIVKLLLEK-GADV   66 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCcc-------------CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCc
Confidence            346789999999999999999999999 67665544             57899999999999999999999999 9999


Q ss_pred             ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHH
Q 004911          101 NVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAI  163 (724)
Q Consensus       101 N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~L  163 (724)
                      +.. +..|.||+|+|+..++   .+++++|++.|.+++..|..|.||+++|+..++.++++.|
T Consensus        67 ~~~-~~~~~~~l~~a~~~~~---~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          67 NAR-DKDGNTPLHLAARNGN---LDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             ccc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            988 8999999999999999   9999999999999999999999999999999998887765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.63  E-value=1.7e-16  Score=162.21  Aligned_cols=115  Identities=26%  Similarity=0.309  Sum_probs=101.5

Q ss_pred             CCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q 004911           65 GSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG  144 (724)
Q Consensus        65 g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G  144 (724)
                      +.+.-|..|.+|||+||+.|+..+|+.||.. |+.||.. +....||||+||..||   -+||+.||+..+|+|.++..|
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~r-garvn~t-nmgddtplhlaaahgh---rdivqkll~~kadvnavnehg  100 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNST-NMGDDTPLHLAAAHGH---RDIVQKLLSRKADVNAVNEHG  100 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhc-ccccccc-cCCCCcchhhhhhccc---HHHHHHHHHHhcccchhhccC
Confidence            3344478999999999999999999999999 9999998 8888999999999999   999999999999999999999


Q ss_pred             CcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchh
Q 004911          145 HHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTA  203 (724)
Q Consensus       145 ~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~A  203 (724)
                      +|||||||.-|...+.+.|    +..|+               .++..|++|.|||..|
T Consensus       101 ntplhyacfwgydqiaedl----i~~ga---------------~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  101 NTPLHYACFWGYDQIAEDL----ISCGA---------------AVNICNKKGMTPLDKA  140 (448)
T ss_pred             CCchhhhhhhcHHHHHHHH----Hhccc---------------eeeecccCCCCchhhh
Confidence            9999999999996666544    44554               4556789999999876

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.61  E-value=2.6e-16  Score=181.29  Aligned_cols=211  Identities=20%  Similarity=0.212  Sum_probs=179.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 004911           25 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC  104 (724)
Q Consensus        25 ~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~  104 (724)
                      +-.|+|-.||+.|+.|+|++||. .|++|...             |+.|.+||.+|+..||+.+|+.||.+ .++|+...
T Consensus       756 n~~t~LT~acaggh~e~vellv~-rganiehr-------------dkkgf~plImaatagh~tvV~~llk~-ha~veaQs  820 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVV-RGANIEHR-------------DKKGFVPLIMAATAGHITVVQDLLKA-HADVEAQS  820 (2131)
T ss_pred             cccccccccccCccHHHHHHHHH-hccccccc-------------ccccchhhhhhcccCchHHHHHHHhh-hhhhhhhc
Confidence            44589999999999999999999 89999887             79999999999999999999999999 99999999


Q ss_pred             CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHc--------CCCCchh
Q 004911          105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFG--------SKNSSVV  176 (724)
Q Consensus       105 d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~--------~ga~~~~  176 (724)
                      |..+.|+|-+||.+|.   .++|++||.+||+-..++-...|||.+|...|..++++.++..+.+        .|..+++
T Consensus       821 drtkdt~lSlacsggr---~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLm  897 (2131)
T KOG4369|consen  821 DRTKDTMLSLACSGGR---TRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLM  897 (2131)
T ss_pred             ccccCceEEEecCCCc---chHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhh
Confidence            9999999999999999   9999999999999999999999999999999999999988876532        2334444


Q ss_pred             hhcccccccc--------cccCCC-CCCCCChhchhHhcCCCchhhhhcCCC----ccccCCCCccccccccCCCCCCCC
Q 004911          177 VASGAEHNLT--------VSIGSS-NSDYSSPLLTASASGSPPSPSRLVSSP----MALKFNDVSFGTGAEKREYPIDPS  243 (724)
Q Consensus       177 ~aa~~~~~l~--------~~in~~-d~~G~TPLh~Aa~~G~~eiVe~Lad~~----a~~~~g~TpLh~Aa~~g~~~i~~~  243 (724)
                      +++-..+...        -+||+. ..+-+|+|-+|+..|+.+++..|++..    .+-+.|-|||..++..|..++-..
T Consensus       898 latmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~  977 (2131)
T KOG4369|consen  898 LATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNL  977 (2131)
T ss_pred             hhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchh
Confidence            4433322111        133322 234579999999999999998888655    556779999999999999999999


Q ss_pred             CCcccccccc
Q 004911          244 LPDIKNSIYA  253 (724)
Q Consensus       244 L~d~ga~i~~  253 (724)
                      |++.|++.+.
T Consensus       978 li~~gad~na  987 (2131)
T KOG4369|consen  978 LIAAGADTNA  987 (2131)
T ss_pred             hhhccccccc
Confidence            9999999875

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.59  E-value=4e-15  Score=170.45  Aligned_cols=172  Identities=19%  Similarity=0.222  Sum_probs=139.8

Q ss_pred             CCCCCCCCCCchHHHHHHH---cCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911           17 NNSTAETEDSFTSMLELAS---NNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL   93 (724)
Q Consensus        17 ~di~~~d~~g~TpLh~AA~---~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL   93 (724)
                      -+++.+...|.|.||.|..   .++-++++.||+..+.-||..-         ..-...|.||||+|+.+.+.++|++||
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~---------~~eeY~GqSaLHiAIv~~~~~~V~lLl  204 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIY---------TSEEYYGQSALHIAIVNRDAELVRLLL  204 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhh---------hhHhhcCcchHHHHHHhccHHHHHHHH
Confidence            4466667789999999988   4566999999997776666531         111368999999999999999999999


Q ss_pred             hcCCCCccccc--------C--------------CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 004911           94 LHSSADVNVSC--------G--------------SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVI  151 (724)
Q Consensus        94 e~~GADVN~~~--------d--------------~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlA  151 (724)
                      +. ||||+++|        |              ..|..||-+||..++   .|||++|+++|||++.+|.+|+|.||..
T Consensus       205 ~~-gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq---~eivrlLl~~gAd~~aqDS~GNTVLH~l  280 (782)
T KOG3676|consen  205 AA-GADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQ---PEIVRLLLAHGADPNAQDSNGNTVLHML  280 (782)
T ss_pred             Hc-CCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCC---HHHHHHHHhcCCCCCccccCCChHHHHH
Confidence            99 99999873        1              246789999999999   9999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCC
Q 004911          152 VLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS  218 (724)
Q Consensus       152 a~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~  218 (724)
                      +..-..+    +.+.++..|+.             .....+|..|.|||-+|+..|..++.++++..
T Consensus       281 Vi~~~~~----My~~~L~~ga~-------------~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  281 VIHFVTE----MYDLALELGAN-------------ALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHH----HHHHHHhcCCC-------------ccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            8864433    44455555542             13456789999999999999999998888776

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.57  E-value=8.5e-15  Score=127.24  Aligned_cols=104  Identities=28%  Similarity=0.400  Sum_probs=96.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC
Q 004911           28 TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSD  107 (724)
Q Consensus        28 TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~  107 (724)
                      ..+.+++++|.++.||..+. .|.+||+.              ..|+||||+||-+|.++++++||.. ||+|+.+ |+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~-~g~nVn~~--------------~ggR~plhyAAD~GQl~ilefli~i-GA~i~~k-DKy   66 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVN-EGLNVNEI--------------YGGRTPLHYAADYGQLSILEFLISI-GANIQDK-DKY   66 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHH-ccccHHHH--------------hCCcccchHhhhcchHHHHHHHHHh-ccccCCc-ccc
Confidence            45788999999999999999 77888886              5899999999999999999999999 9999999 999


Q ss_pred             CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 004911          108 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVI  151 (724)
Q Consensus       108 G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlA  151 (724)
                      |.|||..|+..||   .++|++||+.|||-.....+|.+.+..+
T Consensus        67 gITPLLsAvwEGH---~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   67 GITPLLSAVWEGH---RDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             CCcHHHHHHHHhh---HHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            9999999999999   9999999999999999988898877654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.55  E-value=1.6e-14  Score=126.12  Aligned_cols=81  Identities=37%  Similarity=0.619  Sum_probs=75.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCC
Q 004911           77 LMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK  156 (724)
Q Consensus        77 LH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~  156 (724)
                      ||+||..|+++++++|++. +.+++.     |.||||+|+..|+   .+++++|+++|++++.+|.+|+||||+|+..|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~-----~~~~l~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINL-----GNTALHYAAENGN---LEIVKLLLENGADINSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTS-----SSBHHHHHHHTTT---HHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCC-----CCCHHHHHHHcCC---HHHHHHHHHhcccccccCCCCCCHHHHHHHcCC
Confidence            8999999999999999998 888865     8899999999999   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 004911          157 LDSMRAILEE  166 (724)
Q Consensus       157 ~eivk~LLe~  166 (724)
                      .++++.|++.
T Consensus        72 ~~~~~~Ll~~   81 (89)
T PF12796_consen   72 LEIVKLLLEH   81 (89)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            9999887764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.55  E-value=4.8e-14  Score=127.43  Aligned_cols=123  Identities=33%  Similarity=0.538  Sum_probs=109.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911           70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID  149 (724)
Q Consensus        70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLh  149 (724)
                      +.+|.||||+|+..|+.+++++|++. +.+++.. +..|.||||+|+..+.   .+++++|++.|++++..+..|.||+|
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~-~~~g~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~l~   78 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAK-DNDGRTPLHLAAKNGH---LEIVKLLLEKGADVNARDKDGNTPLH   78 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHH
Confidence            46799999999999999999999999 9988887 8999999999999999   99999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc
Q 004911          150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV  216 (724)
Q Consensus       150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La  216 (724)
                      +|+..++.++++.|++.    +               ..++..+..|.|||+.|...++.++++.++
T Consensus        79 ~a~~~~~~~~~~~L~~~----~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          79 LAARNGNLDVVKLLLKH----G---------------ADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHcCcHHHHHHHHHc----C---------------CCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999998888877663    2               145566788899999999998888777653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.54  E-value=7.9e-14  Score=138.50  Aligned_cols=129  Identities=31%  Similarity=0.420  Sum_probs=118.1

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCC-----HHHHHHHH
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGS-----VDVLKLIL   93 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~-----~evVklLL   93 (724)
                      ....+..+.++++.++..++.+.++.++. .+.+++..             +.+|.||||+|+.+|+     .+++++||
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~-------------~~~g~t~l~~a~~~~~~~~~~~~~~~~ll  131 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLA-SGADVNAK-------------DADGDTPLHLAALNGNPPEGNIEVAKLLL  131 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHH-cCCCcccc-------------cCCCCcHHHHHHhcCCcccchHHHHHHHH
Confidence            34456668999999999999999999999 88988776             6899999999999999     99999999


Q ss_pred             hcCCC---CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911           94 LHSSA---DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus        94 e~~GA---DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      +. |+   +.+.. +..|.||||+|+..|+   .+++++||+.|++++..+..|.|++++|+..++.++++.+++.
T Consensus       132 ~~-g~~~~~~~~~-~~~g~tpl~~A~~~~~---~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         132 EA-GADLDVNNLR-DEDGNTPLHWAALNGD---ADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             Hc-CCCCCCcccc-CCCCCchhHHHHHcCc---hHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            99 88   55555 9999999999999999   8999999999999999999999999999999999988888774

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.50  E-value=6.6e-14  Score=160.56  Aligned_cols=139  Identities=23%  Similarity=0.269  Sum_probs=120.6

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccc---ccc-ccccCC-ccc-----CCCCChHHHHHHHcCCHHHHHH
Q 004911           22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVG---LWY-GRVNGS-KQM-----VSEHRTPLMVAATYGSVDVLKL   91 (724)
Q Consensus        22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~g---l~~-a~~~g~-~~~-----d~~G~TPLH~AA~~G~~evVkl   91 (724)
                      ....|.||||+|+.+.|.+.|+.||+ .|+||++..   ++. ..+... +..     -.-|..||-+||..++.|||++
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~-~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl  258 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLA-AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL  258 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHH-cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH
Confidence            44569999999999999999999999 899999864   111 111112 111     2568999999999999999999


Q ss_pred             HHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC--CCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911           92 ILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD--PDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus        92 LLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd--~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      |+++ |||+|++ |..|+|.||..+..-.   .++-.++|++|++  ...+|+.|.|||.+|+.-|+.++.+.+++.
T Consensus       259 Ll~~-gAd~~aq-DS~GNTVLH~lVi~~~---~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  259 LLAH-GADPNAQ-DSNGNTVLHMLVIHFV---TEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHhc-CCCCCcc-ccCCChHHHHHHHHHH---HHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9998 9999999 9999999999999876   9999999999999  889999999999999999999999999885

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.47  E-value=1.9e-13  Score=140.10  Aligned_cols=121  Identities=28%  Similarity=0.299  Sum_probs=112.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 004911           25 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC  104 (724)
Q Consensus        25 ~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~  104 (724)
                      +-..+|++++..|+.+.+..||. .-..+|..             |..|+|+|+.|+..|+.++|++||+. |+|||...
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs-~vr~vn~~-------------D~sGMs~LahAaykGnl~~v~lll~~-gaDvN~~q   75 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLS-TVRQVNQR-------------DPSGMSVLAHAAYKGNLTLVELLLEL-GADVNDKQ   75 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHH-Hhhhhhcc-------------CCCcccHHHHHHhcCcHHHHHHHHHh-CCCcCccc
Confidence            34589999999999999999999 44446655             78999999999999999999999999 99999987


Q ss_pred             CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHH
Q 004911          105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAI  163 (724)
Q Consensus       105 d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~L  163 (724)
                      +..+.||||+||..|+   .+|.++||+.||.+...|.-|+|+-.+|+.-|+.++|..|
T Consensus        76 hg~~YTpLmFAALSGn---~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   76 HGTLYTPLMFAALSGN---QDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             ccccccHHHHHHHcCC---chHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence            8899999999999999   9999999999999999999999999999999999999765

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=3.1e-13  Score=147.49  Aligned_cols=120  Identities=21%  Similarity=0.249  Sum_probs=101.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC
Q 004911           28 TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSD  107 (724)
Q Consensus        28 TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~  107 (724)
                      -.|+-|+..|.+|+|+.++. .-.|+...             ..+|.|+||-|+..||.+||++||+. |+|||.. |.+
T Consensus       552 aLLLDaaLeGEldlVq~~i~-ev~DpSqp-------------NdEGITaLHNAiCaghyeIVkFLi~~-ganVNa~-DSd  615 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIY-EVTDPSQP-------------NDEGITALHNAICAGHYEIVKFLIEF-GANVNAA-DSD  615 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHH-hhcCCCCC-------------CccchhHHhhhhhcchhHHHHHHHhc-CCcccCc-cCC
Confidence            45667899999999999998 44455444             37899999999999999999999999 9999999 999


Q ss_pred             CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHh--cCCCHHHHHHHHHH
Q 004911          108 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPIDVIV--LPPKLDSMRAILEE  166 (724)
Q Consensus       108 G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLhlAa--~~G~~eivk~LLe~  166 (724)
                      |||||||||..++   +.|++.|++.||-|.+.. .++.||..-.-  ..|..+|.++|...
T Consensus       616 GWTPLHCAASCNn---v~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  616 GWTPLHCAASCNN---VPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             CCchhhhhhhcCc---hHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            9999999999999   999999999999887644 46778877643  36778888877653

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.39  E-value=2e-12  Score=152.85  Aligned_cols=106  Identities=27%  Similarity=0.339  Sum_probs=98.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC
Q 004911           28 TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSD  107 (724)
Q Consensus        28 TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~  107 (724)
                      +.|+.||..|++++|+.||+ .|+++|..             |.+|+||||+||.+|+.++|++||++ |+|+|.. |.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~-~Gadin~~-------------d~~G~TpLh~Aa~~g~~eiv~~LL~~-Gadvn~~-d~~  147 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLT-GGADPNCR-------------DYDGRTPLHIACANGHVQVVRVLLEF-GADPTLL-DKD  147 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCC-CCC
Confidence            46899999999999999999 88999887             68999999999999999999999999 9999999 999


Q ss_pred             CCcHHHHHHhCCCCCHHHHHHHHHHC-------CCCCCCCCCCCCcHHHHHh
Q 004911          108 RTTALHCAASGGSANVVDVVRLLLSA-------GADPDCVDANGHHPIDVIV  152 (724)
Q Consensus       108 G~TPLH~Aa~~G~~~~~eiVklLLe~-------GAd~n~~D~~G~TPLhlAa  152 (724)
                      |.||||+|+..|+   .+++++||++       |++++..+..|.+|+..+.
T Consensus       148 G~TpLh~A~~~g~---~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        148 GKTPLELAEENGF---REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCCHHHHHHHCCc---HHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999999999   9999999999       9999988888887766554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.34  E-value=5.7e-12  Score=125.10  Aligned_cols=129  Identities=32%  Similarity=0.383  Sum_probs=111.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCC--CCHHHHHHHHHHCCC---CCCCCCCCC
Q 004911           70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGS--ANVVDVVRLLLSAGA---DPDCVDANG  144 (724)
Q Consensus        70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~--~~~~eiVklLLe~GA---d~n~~D~~G  144 (724)
                      +..+.+++|.|+..+..+++++|+.. |++++.. +.+|.||||+|+..++  ....+++++||+.|+   +.+.+|..|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHc-CCCcccc-cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            46689999999999999999999999 9999888 9999999999999987  122599999999999   666679999


Q ss_pred             CcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911          145 HHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP  219 (724)
Q Consensus       145 ~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~  219 (724)
                      +||||+|+..|+.++++.+++.    ++               +++..+..|.|+|++|+..++.++++.++...
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~----~~---------------~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEA----GA---------------DPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhc----CC---------------CCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999998777766664    32               34455889999999999999999988777754

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.28  E-value=6.3e-12  Score=100.19  Aligned_cols=54  Identities=46%  Similarity=0.746  Sum_probs=41.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHH
Q 004911           73 HRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL  131 (724)
Q Consensus        73 G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL  131 (724)
                      |+||||+||..|+.+++++|+++ |+|+|.+ |.+|+||||+|+..|+   .+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~-d~~g~t~lh~A~~~g~---~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQ-DEDGRTPLHYAAKNGN---IDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B--TTS--HHHHHHHTT----HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHccC---HHHHHHHC
Confidence            67888888888888888888888 8888888 8888888888888888   88888886

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.28  E-value=1.4e-11  Score=145.89  Aligned_cols=87  Identities=30%  Similarity=0.418  Sum_probs=82.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcC
Q 004911           75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLP  154 (724)
Q Consensus        75 TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~  154 (724)
                      +.||.||..|+.++|++||+. |+|+|.. |.+|+||||+|+..|+   .++|++||++|+|++.+|..|.||||+|+..
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~-Gadin~~-d~~G~TpLh~Aa~~g~---~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG-GADPNCR-DYDGRTPLHIACANGH---VQVVRVLLEFGADPTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCcHHHHHHHCCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            468999999999999999999 9999999 9999999999999999   9999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHH
Q 004911          155 PKLDSMRAILEE  166 (724)
Q Consensus       155 G~~eivk~LLe~  166 (724)
                      |+.++++.|++.
T Consensus       159 g~~~iv~~Ll~~  170 (664)
T PTZ00322        159 GFREVVQLLSRH  170 (664)
T ss_pred             CcHHHHHHHHhC
Confidence            999999887764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.28  E-value=3e-12  Score=103.12  Aligned_cols=55  Identities=45%  Similarity=0.673  Sum_probs=32.8

Q ss_pred             HHhcCC-CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 004911           92 ILLHSS-ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVI  151 (724)
Q Consensus        92 LLe~~G-ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlA  151 (724)
                      ||++ | +++|.. |..|.||||+||..|+   .++|++||+.|+|++.+|..|+||||+|
T Consensus         1 LL~~-~~~~~n~~-d~~G~T~LH~A~~~g~---~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEH-GPADVNAQ-DKYGNTPLHWAARYGH---SEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ------T--TT----TTS--HHHHHHHHT----HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCcc-CcCCCcCc-CCCCCcHHHHHHHcCc---HHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            6777 6 899999 9999999999999999   9999999999999999999999999987

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.24  E-value=1.3e-11  Score=107.63  Aligned_cols=86  Identities=24%  Similarity=0.323  Sum_probs=80.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcC
Q 004911           75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLP  154 (724)
Q Consensus        75 TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~  154 (724)
                      --+++++.+|.++-|+-.+.. |.+||..  ..|+||||+||-.|.   ++++++|+..||+++.+|+.|-|||--|+..
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~-g~nVn~~--~ggR~plhyAAD~GQ---l~ilefli~iGA~i~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNE-GLNVNEI--YGGRTPLHYAADYGQ---LSILEFLISIGANIQDKDKYGITPLLSAVWE   77 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHc-cccHHHH--hCCcccchHhhhcch---HHHHHHHHHhccccCCccccCCcHHHHHHHH
Confidence            346899999999999999998 8999987  699999999999999   9999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHH
Q 004911          155 PKLDSMRAILEE  166 (724)
Q Consensus       155 G~~eivk~LLe~  166 (724)
                      ||.+||+.|++.
T Consensus        78 GH~~cVklLL~~   89 (117)
T KOG4214|consen   78 GHRDCVKLLLQN   89 (117)
T ss_pred             hhHHHHHHHHHc
Confidence            999999877764

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=1.8e-11  Score=133.91  Aligned_cols=121  Identities=22%  Similarity=0.339  Sum_probs=97.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCC
Q 004911           76 PLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPP  155 (724)
Q Consensus        76 PLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G  155 (724)
                      .|.-|+..|-+|+|+-++.. --|+... +..|.||||-|+..||   .+||++||++|+|+|..|.+||||||+|+..+
T Consensus       553 LLLDaaLeGEldlVq~~i~e-v~DpSqp-NdEGITaLHNAiCagh---yeIVkFLi~~ganVNa~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYE-VTDPSQP-NDEGITALHNAICAGH---YEIVKFLIEFGANVNAADSDGWTPLHCAASCN  627 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHh-hcCCCCC-CccchhHHhhhhhcch---hHHHHHHHhcCCcccCccCCCCchhhhhhhcC
Confidence            34568999999999999988 6788887 8999999999999999   99999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchh--HhcCCCchhhhhcCCC
Q 004911          156 KLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTA--SASGSPPSPSRLVSSP  219 (724)
Q Consensus       156 ~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~A--a~~G~~eiVe~Lad~~  219 (724)
                      +..+++.|++.    |+  .+            +...-.++.|+...+  .+.|+..|.++|.++.
T Consensus       628 nv~~ckqLVe~----Ga--av------------fAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vq  675 (752)
T KOG0515|consen  628 NVPMCKQLVES----GA--AV------------FASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQ  675 (752)
T ss_pred             chHHHHHHHhc----cc--eE------------EeeecccccchhhhcchhhhhHHHHHHHHHHHH
Confidence            99999888774    32  11            111223455655433  3567788888887654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.19  E-value=3.5e-11  Score=95.87  Aligned_cols=54  Identities=33%  Similarity=0.581  Sum_probs=46.1

Q ss_pred             CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHH
Q 004911          108 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAIL  164 (724)
Q Consensus       108 G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LL  164 (724)
                      |+||||+||..|+   .+++++|+++|+|+|.+|.+|+||||+|+..|+.++++.||
T Consensus         1 g~t~lh~A~~~g~---~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGN---LEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT----HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            7899999999999   99999999999999999999999999999999999998875

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.17  E-value=2.6e-11  Score=97.68  Aligned_cols=56  Identities=39%  Similarity=0.567  Sum_probs=33.0

Q ss_pred             HHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHH
Q 004911           45 MLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCA  115 (724)
Q Consensus        45 LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~A  115 (724)
                      ||+.+..+++..             |..|.||||+||.+|+.++|++||+. |+|++.+ |.+|+||||+|
T Consensus         1 LL~~~~~~~n~~-------------d~~G~T~LH~A~~~g~~~~v~~Ll~~-g~d~~~~-d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQ-------------DKYGNTPLHWAARYGHSEVVRLLLQN-GADPNAK-DKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT----------------TTS--HHHHHHHHT-HHHHHHHHHC-T--TT----TTS--HHHH-
T ss_pred             CCccCcCCCcCc-------------CCCCCcHHHHHHHcCcHHHHHHHHHC-cCCCCCC-cCCCCCHHHhC
Confidence            456333677766             79999999999999999999999977 9999999 99999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.02  E-value=6.9e-10  Score=114.31  Aligned_cols=95  Identities=24%  Similarity=0.255  Sum_probs=87.1

Q ss_pred             CCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 004911           18 NSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS   97 (724)
Q Consensus        18 di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G   97 (724)
                      ++|..|..|+|+|..|+..|++++|+.||+ .|+|||...            +..+.||||.||..|+.+|.++||+. |
T Consensus        37 ~vn~~D~sGMs~LahAaykGnl~~v~lll~-~gaDvN~~q------------hg~~YTpLmFAALSGn~dvcrlllda-G  102 (396)
T KOG1710|consen   37 QVNQRDPSGMSVLAHAAYKGNLTLVELLLE-LGADVNDKQ------------HGTLYTPLMFAALSGNQDVCRLLLDA-G  102 (396)
T ss_pred             hhhccCCCcccHHHHHHhcCcHHHHHHHHH-hCCCcCccc------------ccccccHHHHHHHcCCchHHHHHHhc-c
Confidence            378899999999999999999999999999 899999763            56789999999999999999999999 9


Q ss_pred             CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHH
Q 004911           98 ADVNVSCGSDRTTALHCAASGGSANVVDVVRLL  130 (724)
Q Consensus        98 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklL  130 (724)
                      +..... +.-|+|+-..||.-|+   -++|..+
T Consensus       103 a~~~~v-NsvgrTAaqmAAFVG~---H~CV~iI  131 (396)
T KOG1710|consen  103 ARMYLV-NSVGRTAAQMAAFVGH---HECVAII  131 (396)
T ss_pred             Cccccc-cchhhhHHHHHHHhcc---hHHHHHH
Confidence            999998 9999999999999999   6666554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.73  E-value=9.7e-09  Score=111.80  Aligned_cols=93  Identities=31%  Similarity=0.423  Sum_probs=79.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCCCCCCCcHH
Q 004911           70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA-GADPDCVDANGHHPI  148 (724)
Q Consensus        70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~n~~D~~G~TPL  148 (724)
                      +.++...+++||..|.+..++.+.-. |.|++.. |.+.+|+||.||..|+   +++||+||+. +.|++.+|..|+|||
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~-DyD~RTaLHvAAaEG~---v~v~kfl~~~~kv~~~~kDRw~rtPl  577 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQ-GMDLETK-DYDDRTALHVAAAEGH---VEVVKFLLNACKVDPDPKDRWGRTPL  577 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHh-ccccccc-ccccchhheeecccCc---eeHHHHHHHHHcCCCChhhccCCCcc
Confidence            35667788899999999888888877 8899888 8899999999999999   8999999987 888899999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHH
Q 004911          149 DVIVLPPKLDSMRAILEEV  167 (724)
Q Consensus       149 hlAa~~G~~eivk~LLe~L  167 (724)
                      +-|...+|.+++++|-+..
T Consensus       578 DdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  578 DDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hHhHhcCcHHHHHHHHHHh
Confidence            9999999988888776654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.71  E-value=4.3e-08  Score=107.20  Aligned_cols=95  Identities=24%  Similarity=0.301  Sum_probs=86.3

Q ss_pred             CCCCCh------HHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCC
Q 004911           70 VSEHRT------PLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDAN  143 (724)
Q Consensus        70 d~~G~T------PLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~  143 (724)
                      |.+|.|      -||-.++.|++++.-.||.. ||++|...-..|.||||.|+..|+   .--+++|+-+|||++..|.+
T Consensus       124 DdD~~~~~~LsrQLhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq---~~Q~ElL~vYGAD~~a~d~~  199 (669)
T KOG0818|consen  124 DDDSVTAKDLSKQLHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQ---ILQAELLAVYGADPGAQDSS  199 (669)
T ss_pred             CcchhhHHHHHHHHHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccc---hhhhhHHhhccCCCCCCCCC
Confidence            445555      48999999999999999998 999999967889999999999999   88999999999999999999


Q ss_pred             CCcHHHHHhcCCCHHHHHHHHHHHH
Q 004911          144 GHHPIDVIVLPPKLDSMRAILEEVF  168 (724)
Q Consensus       144 G~TPLhlAa~~G~~eivk~LLe~Ll  168 (724)
                      |.||+.+|-..||.++.+.|++...
T Consensus       200 GmtP~~~AR~~gH~~laeRl~e~~y  224 (669)
T KOG0818|consen  200 GMTPVDYARQGGHHELAERLVEIQY  224 (669)
T ss_pred             CCcHHHHHHhcCchHHHHHHHHHHH
Confidence            9999999999999999999988543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.71  E-value=1.5e-08  Score=110.39  Aligned_cols=72  Identities=28%  Similarity=0.184  Sum_probs=63.8

Q ss_pred             cccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCC
Q 004911           60 YGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGA  135 (724)
Q Consensus        60 ~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GA  135 (724)
                      +-...+.+..|.+.+|+||+||..|++++||+||+..+.|++.+ |..|+|||--|...+|   .+++++|-+.-.
T Consensus       526 ~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~k-DRw~rtPlDdA~~F~h---~~v~k~L~~~~~  597 (622)
T KOG0506|consen  526 ALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPK-DRWGRTPLDDAKHFKH---KEVVKLLEEAQY  597 (622)
T ss_pred             HHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChh-hccCCCcchHhHhcCc---HHHHHHHHHHhc
Confidence            33344566678999999999999999999999999989999998 9999999999999999   999999987743

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.61  E-value=1.9e-08  Score=115.31  Aligned_cols=81  Identities=31%  Similarity=0.344  Sum_probs=77.2

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHH
Q 004911           69 MVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI  148 (724)
Q Consensus        69 ~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPL  148 (724)
                      .|..|+|+||+|+..|..+++++||.+ |+|++.++-..|+||||-|+.+|+   +|++-+||.+|+.+.++|++|..||
T Consensus        48 kD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~---idca~lLL~~g~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   48 KDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGN---IDCASLLLSKGRSLRIKDKEGLSPL  123 (1267)
T ss_pred             HHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhch---HHHHHHHHhcCCceEEecccCCCHH
Confidence            378899999999999999999999999 999999966789999999999999   9999999999999999999999999


Q ss_pred             HHHhc
Q 004911          149 DVIVL  153 (724)
Q Consensus       149 hlAa~  153 (724)
                      .+.++
T Consensus       124 q~~~r  128 (1267)
T KOG0783|consen  124 QFLSR  128 (1267)
T ss_pred             HHHhh
Confidence            99876

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.54  E-value=2e-07  Score=103.16  Aligned_cols=117  Identities=24%  Similarity=0.271  Sum_probs=98.0

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC-cccccCCCC
Q 004911           30 MLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSAD-VNVSCGSDR  108 (724)
Q Consensus        30 Lh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD-VN~~~d~~G  108 (724)
                      |+.|+..+|+-.++.+.. .|.++-..             +.+.+|.||+|+..|+-+||+|||+++... ++.. +..|
T Consensus       870 il~av~~~D~~klqE~h~-~gg~ll~~-------------~~~~~sllh~a~~tg~~eivkyildh~p~elld~~-de~g  934 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHL-NGGSLLIQ-------------GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMA-DETG  934 (1004)
T ss_pred             HHHHHHhccHHHHHHHHh-cCCceEee-------------CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHH-hhhh
Confidence            788899998877777766 34444333             467899999999999999999999993333 3444 7899


Q ss_pred             CcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHH
Q 004911          109 TTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAIL  164 (724)
Q Consensus       109 ~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LL  164 (724)
                      .|+||-|+..++   -.|+++|+++||.+...|..|.||-.-|-..|..+.+.+|-
T Consensus       935 et~lhkaa~~~~---r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  935 ETALHKAACQRN---RAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             hHHHHHHHHhcc---hHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHh
Confidence            999999999999   89999999999999999999999999999999988776553

>PF13606 Ank_3: Ankyrin repeat

Probab=98.48  E-value=1.4e-07  Score=66.29  Aligned_cols=28  Identities=46%  Similarity=0.768  Sum_probs=17.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911           73 HRTPLMVAATYGSVDVLKLILLHSSADVN  101 (724)
Q Consensus        73 G~TPLH~AA~~G~~evVklLLe~~GADVN  101 (724)
                      |+||||+||..|+.++|++||++ |+|||
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~-gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEH-GADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHc-CCCCC
Confidence            56666666666666666666666 66665

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.43  E-value=6.4e-07  Score=98.26  Aligned_cols=97  Identities=23%  Similarity=0.274  Sum_probs=85.3

Q ss_pred             CCCCCCCCch------HHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911           19 STAETEDSFT------SMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI   92 (724)
Q Consensus        19 i~~~d~~g~T------pLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL   92 (724)
                      ..-+|++|.|      -||-.++.|++++.-.||. -|+++|...            -..|.||||+||+.|+.--+++|
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~-lGA~~N~~h------------pekg~TpLHvAAk~Gq~~Q~ElL  186 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLS-LGAQANFFH------------PEKGNTPLHVAAKAGQILQAELL  186 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHH-cccccCCCC------------cccCCchhHHHHhccchhhhhHH
Confidence            4456666654      4899999999999999999 899998763            46799999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC
Q 004911           93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA  133 (724)
Q Consensus        93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~  133 (724)
                      +-+ |||++.. |..|+||+.+|-..||   -++.+.|++.
T Consensus       187 ~vY-GAD~~a~-d~~GmtP~~~AR~~gH---~~laeRl~e~  222 (669)
T KOG0818|consen  187 AVY-GADPGAQ-DSSGMTPVDYARQGGH---HELAERLVEI  222 (669)
T ss_pred             hhc-cCCCCCC-CCCCCcHHHHHHhcCc---hHHHHHHHHH
Confidence            998 9999999 9999999999999999   8888888764

>PF13606 Ank_3: Ankyrin repeat

Probab=98.43  E-value=2.6e-07  Score=64.95  Aligned_cols=30  Identities=43%  Similarity=0.721  Sum_probs=28.3

Q ss_pred             CCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCC
Q 004911          107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDC  139 (724)
Q Consensus       107 ~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~  139 (724)
                      +|+||||+||..|+   .++|++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~---~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGN---IEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCC---HHHHHHHHHcCCCCCC
Confidence            58999999999999   9999999999999984

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.43  E-value=3.2e-07  Score=65.62  Aligned_cols=32  Identities=50%  Similarity=0.696  Sum_probs=19.9

Q ss_pred             CCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC
Q 004911          107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD  141 (724)
Q Consensus       107 ~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D  141 (724)
                      +|+||||+|+..|+   .++|++||++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~---~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGH---PDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTC---HHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHH---HHHHHHHHHCcCCCCCCC
Confidence            35666666666666   666666666666666554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.38  E-value=2.4e-06  Score=95.52  Aligned_cols=157  Identities=18%  Similarity=0.160  Sum_probs=100.3

Q ss_pred             CCCChhchhHhcCCCchhhhhcCCC-----ccccCCCCccccc---cccCCCCCCCCCCccccccccccccccccceeec
Q 004911          195 DYSSPLLTASASGSPPSPSRLVSSP-----MALKFNDVSFGTG---AEKREYPIDPSLPDIKNSIYATDEFRMFSFKIRP  266 (724)
Q Consensus       195 ~G~TPLh~Aa~~G~~eiVe~Lad~~-----a~~~~g~TpLh~A---a~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~p  266 (724)
                      +-+|+|.+|+..|..+++..++...     -..-+|+.  |.+   ...+.+++...|+..+.....+|..+...-.+..
T Consensus        57 ~qR~~~~v~~~~Gs~~~~~~i~~~~~~e~~~~C~~~~~--~C~~~g~s~~~~e~~~hL~~~k~~~~~tda~g~~~~~v~~  134 (528)
T KOG1595|consen   57 NQRRRRPVARRDGSFNYSPDIYCTKYDEVTGICPDGDE--HCAVLGRSVGDTERTYHLRYYKTLPCVTDARGNCVKNVLH  134 (528)
T ss_pred             ccccccchhhhcCccccccceeecchhhccccCCCCcc--cchhcccccCCcceeEeccccccccCccccCCCcccCccc
Confidence            4489999999999988876665333     22233444  333   3345677777788888887777777665555544


Q ss_pred             cCc-cCCCCCCC--------------------Cccc----CCCCCccCCC---------CccCccccCCCCCCCCCcCCC
Q 004911          267 CSR-AYSHDWTE--------------------CPFV----HPGENARRRD---------PRKFHYSCVPCPDFRKGACRR  312 (724)
Q Consensus       267 Csr-~~shdwte--------------------Cpf~----H~ge~arRRd---------Pr~y~Ys~~~CP~~rkG~C~~  312 (724)
                      |.- ...++|..                    -...    ...+.....+         .|.|.|+..+|+.-   .|..
T Consensus       135 ~~~~~~~~~~r~~~~~l~e~~~~~~~~~~e~~~~~~~~~~~y~~Dp~~pdi~~~ys~DeFrMy~fKir~C~R~---~shD  211 (528)
T KOG1595|consen  135 CAFAHGPNDLRPPVEDLLELQGGSGLPDDEPEVESKLDVTEYPEDPSWPDINGIYSSDEFRMYSFKIRRCSRP---RSHD  211 (528)
T ss_pred             ccccCCccccccHHHHHHhcccccCccCCCcccccccccccccCCCCcccccccccccceEEEeeeecccCCc---cCCC
Confidence            321 11111110                    0000    0011111222         46677788888755   4778


Q ss_pred             CCCcccCC-CcccccCCccc--cccccCCCC--CCCCCcc-cccccCCCc
Q 004911          313 GDMCEYAH-GVFECWLHPAQ--YRTRLCKDG--TSCDRRV-CFFAHTAEE  356 (724)
Q Consensus       313 Gd~C~~aH-~~~E~~~hP~~--yrT~~C~~~--~~C~~~~-C~faH~~~e  356 (724)
                      +-.|.|+| +.....-.|.+  |+..+|..|  +.|.+|+ |-|||+++|
T Consensus       212 wteCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfE  261 (528)
T KOG1595|consen  212 WTECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFE  261 (528)
T ss_pred             cccCCccCCCcccccCCcccccccCccCcccccCCCCCCCccccccceeh
Confidence            88999999 76666667654  788899999  7899999 999999888

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.30  E-value=1.4e-06  Score=96.98  Aligned_cols=90  Identities=29%  Similarity=0.344  Sum_probs=76.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHh-cCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhc
Q 004911           75 TPLMVAATYGSVDVLKLILL-HSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVL  153 (724)
Q Consensus        75 TPLH~AA~~G~~evVklLLe-~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~  153 (724)
                      -|||+++.....+-+..++. .....|+.. |..|.||||+|+..|+   .+.+++||.+|||+..+|++|++|||.|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~-D~~g~TpLhlAV~Lg~---~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRR-DPPGRTPLHLAVRLGH---VEAARILLSAGADVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccc-cCCCCccHHHHHHhcC---HHHHHHHHhcCCCccccccccccHHHHHHH
Confidence            46999998887665554333 235678888 9999999999999999   999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 004911          154 PPKLDSMRAILEEVF  168 (724)
Q Consensus       154 ~G~~eivk~LLe~Ll  168 (724)
                      .|+.+++..++..+-
T Consensus        98 ~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   98 TGNEQIITEVLRHLK  112 (560)
T ss_pred             cCCHHHHHHHHHHhH
Confidence            999988888877543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.30  E-value=7.7e-07  Score=63.63  Aligned_cols=31  Identities=45%  Similarity=0.674  Sum_probs=29.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004911           72 EHRTPLMVAATYGSVDVLKLILLHSSADVNVS  103 (724)
Q Consensus        72 ~G~TPLH~AA~~G~~evVklLLe~~GADVN~~  103 (724)
                      +|+||||+||..|+.++|++||++ |++++.+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~-ga~~~~~   31 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH-GADINAR   31 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT-TSCTTCB
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC-cCCCCCC
Confidence            489999999999999999999998 9999987

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.28  E-value=1.6e-06  Score=96.84  Aligned_cols=88  Identities=28%  Similarity=0.369  Sum_probs=54.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCC--Cccccc-CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhc
Q 004911           77 LMVAATYGSVDVLKLILLHSSA--DVNVSC-GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVL  153 (724)
Q Consensus        77 LH~AA~~G~~evVklLLe~~GA--DVN~~~-d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~  153 (724)
                      |.-|+...++..+-+||.+ |.  .+|..| +.+|+|+||+||..|+   +.+.++|+-+|+|+-.+|.+|+|+|.||-.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAh-g~~~e~~~t~~~~~grt~LHLa~~~gn---Vvl~QLLiWyg~dv~~rda~g~t~l~yar~  703 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAH-GSREEVNETCGEGDGRTALHLAARKGN---VVLAQLLIWYGVDVMARDAHGRTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhc-cCchhhhccccCCCCcchhhhhhhhcc---hhHHHHHHHhCccceecccCCchhhhhHhh
Confidence            4555555666666666666 43  233332 3455677777777777   666777776677777777777777777777


Q ss_pred             CCCHHHHHHHHHHHH
Q 004911          154 PPKLDSMRAILEEVF  168 (724)
Q Consensus       154 ~G~~eivk~LLe~Ll  168 (724)
                      .|.-+|+..|++++.
T Consensus       704 a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGC  718 (749)
T ss_pred             cccHHHHHHHHHcCC
Confidence            666666665555433

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.21  E-value=7.6e-07  Score=102.55  Aligned_cols=85  Identities=16%  Similarity=0.163  Sum_probs=79.1

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA   98 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA   98 (724)
                      +|+.|.-|+|+||+|+..|..+++++||+ +|++++.++            -..|+||||-|+.+|++|++-+||.+ |+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlq-hGidv~vqD------------~ESG~taLHRaiyyG~idca~lLL~~-g~  110 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQ-HGIDVFVQD------------EESGYTALHRAIYYGNIDCASLLLSK-GR  110 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHh-cCceeeecc------------ccccchHhhHhhhhchHHHHHHHHhc-CC
Confidence            78899999999999999999999999999 799998874            36799999999999999999999999 99


Q ss_pred             CcccccCCCCCcHHHHHHhC
Q 004911           99 DVNVSCGSDRTTALHCAASG  118 (724)
Q Consensus        99 DVN~~~d~~G~TPLH~Aa~~  118 (724)
                      .+..+ |++|..||..-++-
T Consensus       111 SL~i~-Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  111 SLRIK-DKEGLSPLQFLSRV  129 (1267)
T ss_pred             ceEEe-cccCCCHHHHHhhc
Confidence            99999 99999999988773

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.14  E-value=4.6e-06  Score=92.88  Aligned_cols=88  Identities=23%  Similarity=0.340  Sum_probs=74.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcC-CCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC
Q 004911           28 TSMLELASNNDVEGFKRMLERD-PSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGS  106 (724)
Q Consensus        28 TpLh~AA~~G~le~Vk~LLe~~-gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~  106 (724)
                      -|||.++...+.+-+..++... ...|+..             |..|+||||+|+.-|+.+.++.||.+ |||+-.+ +.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~-------------D~~g~TpLhlAV~Lg~~~~a~~Ll~a-~Adv~~k-N~   86 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRR-------------DPPGRTPLHLAVRLGHVEAARILLSA-GADVSIK-NN   86 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccc-------------cCCCCccHHHHHHhcCHHHHHHHHhc-CCCcccc-cc
Confidence            4699999999888887766533 3345554             78899999999999999999999999 9999999 99


Q ss_pred             CCCcHHHHHHhCCCCCHHHHHHHHHHC
Q 004911          107 DRTTALHCAASGGSANVVDVVRLLLSA  133 (724)
Q Consensus       107 ~G~TPLH~Aa~~G~~~~~eiVklLLe~  133 (724)
                      .||+|||.|+..|+   .+++..+|.+
T Consensus        87 ~gWs~L~EAv~~g~---~q~i~~vlr~  110 (560)
T KOG0522|consen   87 EGWSPLHEAVSTGN---EQIITEVLRH  110 (560)
T ss_pred             ccccHHHHHHHcCC---HHHHHHHHHH
Confidence            99999999999999   7776666644

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.12  E-value=1.6e-06  Score=94.63  Aligned_cols=68  Identities=34%  Similarity=0.668  Sum_probs=58.6

Q ss_pred             CccccCCCCCCC-CCcCCC-CCCcccCCCccccc--------CCccccccccCCCC---CCCCCcc-cccccCCCccccc
Q 004911          295 FHYSCVPCPDFR-KGACRR-GDMCEYAHGVFECW--------LHPAQYRTRLCKDG---TSCDRRV-CFFAHTAEELRPL  360 (724)
Q Consensus       295 y~Ys~~~CP~~r-kG~C~~-Gd~C~~aH~~~E~~--------~hP~~yrT~~C~~~---~~C~~~~-C~faH~~~e~r~~  360 (724)
                      -.|...+|..++ .|.|+. |+.|.|+|+..|..        ..|..|||++|..|   +.|+||. |.|+|...+.+..
T Consensus       128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~  207 (332)
T KOG1677|consen  128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRAS  207 (332)
T ss_pred             ccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccccc
Confidence            457889999875 579999 99999999998877        23779999999998   7899997 9999999999876


Q ss_pred             cc
Q 004911          361 YV  362 (724)
Q Consensus       361 ~~  362 (724)
                      ..
T Consensus       208 ~~  209 (332)
T KOG1677|consen  208 NR  209 (332)
T ss_pred             cc
Confidence            53

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.10  E-value=5.2e-06  Score=92.80  Aligned_cols=63  Identities=30%  Similarity=0.422  Sum_probs=59.3

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCC
Q 004911           71 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPD  138 (724)
Q Consensus        71 ~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n  138 (724)
                      .+|+|+||+||+.|++.+.++||=+ |+|+-.+ |..|+|+|.||-..|.   .+++.+||.+|+...
T Consensus       659 ~~grt~LHLa~~~gnVvl~QLLiWy-g~dv~~r-da~g~t~l~yar~a~s---qec~d~llq~gcp~e  721 (749)
T KOG0705|consen  659 GDGRTALHLAARKGNVVLAQLLIWY-GVDVMAR-DAHGRTALFYARQAGS---QECIDVLLQYGCPDE  721 (749)
T ss_pred             CCCcchhhhhhhhcchhHHHHHHHh-Cccceec-ccCCchhhhhHhhccc---HHHHHHHHHcCCCcc
Confidence            5789999999999999999999988 9999999 9999999999999999   999999999997644

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.98  E-value=5e-06  Score=99.33  Aligned_cols=85  Identities=33%  Similarity=0.493  Sum_probs=79.1

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 004911           71 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDV  150 (724)
Q Consensus        71 ~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhl  150 (724)
                      ..|.|+||+|+.+|..-++++||+. |+++|.. |..|.||||.+...|+   ...+.+|+++||+.++.|.+|.+||++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~-ga~vn~~-d~~g~~plh~~~~~g~---~~~~~~ll~~~a~~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQN-GADVNAL-DSKGRTPLHHATASGH---TSIACLLLKRGADPNAFDPDGKLPLDI  728 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhc-CCcchhh-hccCCCcchhhhhhcc---cchhhhhccccccccccCccCcchhhH
Confidence            4689999999999999999999999 9999999 9999999999999999   999999999999999999999999999


Q ss_pred             HhcCCCHHHH
Q 004911          151 IVLPPKLDSM  160 (724)
Q Consensus       151 Aa~~G~~eiv  160 (724)
                      |....+.+++
T Consensus       729 a~~~~~~d~~  738 (785)
T KOG0521|consen  729 AMEAANADIV  738 (785)
T ss_pred             HhhhccccHH
Confidence            9887554443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.98  E-value=8.1e-06  Score=97.26  Aligned_cols=132  Identities=17%  Similarity=0.110  Sum_probs=105.0

Q ss_pred             CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911           17 NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS   96 (724)
Q Consensus        17 ~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~   96 (724)
                      ..+....-.|.|.||+++..+..-.++.+++..+..-+             ..|.+|.-.+|+ |..++++.+-+|+...
T Consensus       565 ~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~-------------eld~d~qgV~hf-ca~lg~ewA~ll~~~~  630 (975)
T KOG0520|consen  565 NLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDL-------------ELDRDGQGVIHF-CAALGYEWAFLPISAD  630 (975)
T ss_pred             hccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCch-------------hhcccCCChhhH-hhhcCCceeEEEEeec
Confidence            34556677889999999999999999999994232222             236777788888 5566777777776655


Q ss_pred             CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCC------CCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911           97 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC------VDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus        97 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~------~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      |..++.+ |..||||||+|+..|+   ..++..|++.|++...      .+-.|.|+..+|..+|+..+.-+|-+.
T Consensus       631 ~~ai~i~-D~~G~tpL~wAa~~G~---e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  631 GVAIDIR-DRNGWTPLHWAAFRGR---EKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             ccccccc-cCCCCcccchHhhcCH---HHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999 9999999999999999   9999999988876654      344699999999999998877766553

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.96  E-value=1.1e-05  Score=89.59  Aligned_cols=101  Identities=22%  Similarity=0.180  Sum_probs=88.0

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCc-cccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSV-DEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL   93 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadI-n~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL   93 (724)
                      .+-++-+++.+..|.||+|+..|+-|+|+++|+..+..+ |..             |..|.|+||-||..++-.|.++|+
T Consensus       888 ~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~-------------de~get~lhkaa~~~~r~vc~~lv  954 (1004)
T KOG0782|consen  888 NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMA-------------DETGETALHKAACQRNRAVCQLLV  954 (1004)
T ss_pred             cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHH-------------hhhhhHHHHHHHHhcchHHHHHHH
Confidence            345567788999999999999999999999999655443 332             678999999999999999999999


Q ss_pred             hcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC
Q 004911           94 LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA  133 (724)
Q Consensus        94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~  133 (724)
                      +. ||.+-.. |..|.||-.-|-..|.   .++..||-.+
T Consensus       955 da-gasl~kt-d~kg~tp~eraqqa~d---~dlaayle~r  989 (1004)
T KOG0782|consen  955 DA-GASLRKT-DSKGKTPQERAQQAGD---PDLAAYLESR  989 (1004)
T ss_pred             hc-chhheec-ccCCCChHHHHHhcCC---chHHHHHhhh
Confidence            99 9999888 9999999999999999   8999888654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.92  E-value=3.6e-05  Score=82.55  Aligned_cols=85  Identities=25%  Similarity=0.182  Sum_probs=70.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhc
Q 004911           74 RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVL  153 (724)
Q Consensus        74 ~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~  153 (724)
                      .--|..||+.|.++.|++|++. |.+||.. |.....||.+|+..||   .++||+||++||-...-..+|...+.-|..
T Consensus        37 f~elceacR~GD~d~v~~LVet-gvnVN~v-D~fD~spL~lAsLcGH---e~vvklLLenGAiC~rdtf~G~RC~YgaLn  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVET-GVNVNAV-DRFDSSPLYLASLCGH---EDVVKLLLENGAICSRDTFDGDRCHYGALN  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHh-CCCcchh-hcccccHHHHHHHcCc---HHHHHHHHHcCCcccccccCcchhhhhhhh
Confidence            4568999999999999999998 9999999 9999999999999999   999999999999777666678776655442


Q ss_pred             CCCHHHHHHHHHH
Q 004911          154 PPKLDSMRAILEE  166 (724)
Q Consensus       154 ~G~~eivk~LLe~  166 (724)
                         ..|.+.|+.+
T Consensus       112 ---d~IR~mllsy  121 (516)
T KOG0511|consen  112 ---DRIRRMLLSY  121 (516)
T ss_pred             ---HHHHHHHHHH
Confidence               3444555554

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.87  E-value=3.8e-05  Score=89.99  Aligned_cols=121  Identities=21%  Similarity=0.210  Sum_probs=96.9

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhcCCC---CccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 004911           21 AETEDSFTSMLELASNNDVEGFKRMLERDPS---SVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS   97 (724)
Q Consensus        21 ~~d~~g~TpLh~AA~~G~le~Vk~LLe~~ga---dIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G   97 (724)
                      .....+.--.+.|+..|++-.|+..++....   ++|.             +|.-|+++|++|+.+.+.+++++|+++ +
T Consensus        20 ~~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc-------------~d~lGr~al~iai~nenle~~eLLl~~-~   85 (822)
T KOG3609|consen   20 ADLNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINC-------------RDPLGRLALHIAIDNENLELQELLLDT-S   85 (822)
T ss_pred             cccchhhHHHHHHHHcCChHHHHHHHHhccccccchhc-------------cChHhhhceecccccccHHHHHHHhcC-c
Confidence            3444556678999999999999999995433   3343             378899999999999999999999998 4


Q ss_pred             CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCC----------CCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911           98 ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPD----------CVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus        98 ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n----------~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      ..+        -.+|.+|+..|.   +++|++||.+-....          ..-..+.|||.+||..++.||++.|++.
T Consensus        86 ~~~--------gdALL~aI~~~~---v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k  153 (822)
T KOG3609|consen   86 SEE--------GDALLLAIAVGS---VPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR  153 (822)
T ss_pred             ccc--------chHHHHHHHHHH---HHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc
Confidence            444        358999999999   999999998843331          1223578999999999999999977764

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.85  E-value=2.7e-05  Score=76.88  Aligned_cols=66  Identities=24%  Similarity=0.269  Sum_probs=50.1

Q ss_pred             CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC-CCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911           97 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG-ADPDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus        97 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G-Ad~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      +.+||.+ |..|||||++|+..|+   .++|.+||.+| +.+...|..|.+++.+|-..|+.+.++.|.+.
T Consensus         2 e~~in~r-D~fgWTalmcaa~eg~---~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINAR-DAFGWTALMCAAMEGS---NEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccch-hhhcchHHHHHhhhcc---hhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            4577777 7777777777777777   77777777777 77777777777777777777777777766664

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.76  E-value=8.3e-05  Score=79.89  Aligned_cols=85  Identities=28%  Similarity=0.360  Sum_probs=70.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC
Q 004911           27 FTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGS  106 (724)
Q Consensus        27 ~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~  106 (724)
                      +--|.+||+.|+++.|++|++ .|.+||.+             |.....||.+|+..||.++||+||++ ||-...- ..
T Consensus        37 f~elceacR~GD~d~v~~LVe-tgvnVN~v-------------D~fD~spL~lAsLcGHe~vvklLLen-GAiC~rd-tf  100 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE-TGVNVNAV-------------DRFDSSPLYLASLCGHEDVVKLLLEN-GAICSRD-TF  100 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH-hCCCcchh-------------hcccccHHHHHHHcCcHHHHHHHHHc-CCccccc-cc
Confidence            667999999999999999999 89999988             67788999999999999999999999 9877665 66


Q ss_pred             CCCcHHHHHHhCCCCCHHHHHHHHHHC
Q 004911          107 DRTTALHCAASGGSANVVDVVRLLLSA  133 (724)
Q Consensus       107 ~G~TPLH~Aa~~G~~~~~eiVklLLe~  133 (724)
                      +|... |+++.+     ..|-+.||..
T Consensus       101 ~G~RC-~YgaLn-----d~IR~mllsy  121 (516)
T KOG0511|consen  101 DGDRC-HYGALN-----DRIRRMLLSY  121 (516)
T ss_pred             Ccchh-hhhhhh-----HHHHHHHHHH
Confidence            77665 455554     3455566654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.75  E-value=2.4e-05  Score=93.34  Aligned_cols=134  Identities=13%  Similarity=0.075  Sum_probs=100.1

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHH-HCCCCCCCCCCCCC
Q 004911           67 KQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL-SAGADPDCVDANGH  145 (724)
Q Consensus        67 ~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL-e~GAd~n~~D~~G~  145 (724)
                      ......|+|-||+++..+..-.++.+++-.|...+.. +.+|.-.+|++|..|.    +.+-+|+ -+|..++.+|.+|+
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~el-d~d~qgV~hfca~lg~----ewA~ll~~~~~~ai~i~D~~G~  642 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLEL-DRDGQGVIHFCAALGY----EWAFLPISADGVAIDIRDRNGW  642 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhh-cccCCChhhHhhhcCC----ceeEEEEeecccccccccCCCC
Confidence            3344689999999999999999999998424444445 7788888888666665    5554454 45999999999999


Q ss_pred             cHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCC
Q 004911          146 HPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS  218 (724)
Q Consensus       146 TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~  218 (724)
                      ||||||+.+|+..++..|+++....+             +..+.......|.|+-.+|..+|+..+.-++...
T Consensus       643 tpL~wAa~~G~e~l~a~l~~lga~~~-------------~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIELGADPG-------------AVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cccchHhhcCHHHHHHHHHHhccccc-------------cccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999777776666533333             2234455567789999999999988775555443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.69  E-value=4.4e-05  Score=89.52  Aligned_cols=129  Identities=14%  Similarity=0.151  Sum_probs=97.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCC---CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHH
Q 004911           72 EHRTPLMVAATYGSVDVLKLILLHSS---ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI  148 (724)
Q Consensus        72 ~G~TPLH~AA~~G~~evVklLLe~~G---ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPL  148 (724)
                      .+.--...|+.+|++-.|+..|+...   .++|+. |.-|+++||.|+.+.+   .+++++||+++...       ..+|
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~-d~lGr~al~iai~nen---le~~eLLl~~~~~~-------gdAL   92 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCR-DPLGRLALHIAIDNEN---LELQELLLDTSSEE-------GDAL   92 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhcc-ChHhhhceeccccccc---HHHHHHHhcCcccc-------chHH
Confidence            34456678999999999999998633   478888 9999999999999999   99999999997665       3478


Q ss_pred             HHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccccccc-CCCCCCCCChhchhHhcCCCchhhhhcCCCcc
Q 004911          149 DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSI-GSSNSDYSSPLLTASASGSPPSPSRLVSSPMA  221 (724)
Q Consensus       149 hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~i-n~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~  221 (724)
                      -+|+..|..++++.++.+....+  ....        ..+. ...-..+.|||.+||..+++||++.|++.++.
T Consensus        93 L~aI~~~~v~~VE~ll~~~~~~~--~~~~--------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen   93 LLAIAVGSVPLVELLLVHFVDAP--YLER--------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             HHHHHHHHHHHHHHHHhcccccc--hhcc--------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence            88999999898888877522211  0000        0111 12234568999999999999999999877743

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.59  E-value=0.00011  Score=72.58  Aligned_cols=66  Identities=26%  Similarity=0.245  Sum_probs=59.6

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCC-CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCC
Q 004911           69 MVSEHRTPLMVAATYGSVDVLKLILLHSS-ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC  139 (724)
Q Consensus        69 ~d~~G~TPLH~AA~~G~~evVklLLe~~G-ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~  139 (724)
                      .|..|+|+||.||..|+.++|.||+.+ | ++|... |..|.+++.+|-..|+   .++|+.|-+.-.+-..
T Consensus         8 rD~fgWTalmcaa~eg~~eavsyllgr-g~a~vgv~-d~ssldaaqlaek~g~---~~fvh~lfe~~~ets~   74 (223)
T KOG2384|consen    8 RDAFGWTALMCAAMEGSNEAVSYLLGR-GVAFVGVT-DESSLDAAQLAEKGGA---QAFVHSLFENDRETSH   74 (223)
T ss_pred             hhhhcchHHHHHhhhcchhHHHHHhcc-Cccccccc-ccccchHHHHHHhcCh---HHHHHHHHHHhccCCC
Confidence            378999999999999999999999999 7 899988 9999999999999999   9999999988444333

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.48  E-value=8.8e-05  Score=88.92  Aligned_cols=91  Identities=24%  Similarity=0.267  Sum_probs=81.5

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911           22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN  101 (724)
Q Consensus        22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN  101 (724)
                      .-..|.|+||.|+..|..-+++.||+ .|+++|..             |..|+||||.+...|+...+.+|++. |++.+
T Consensus       652 ~~~~~~s~lh~a~~~~~~~~~e~ll~-~ga~vn~~-------------d~~g~~plh~~~~~g~~~~~~~ll~~-~a~~~  716 (785)
T KOG0521|consen  652 VLCIGCSLLHVAVGTGDSGAVELLLQ-NGADVNAL-------------DSKGRTPLHHATASGHTSIACLLLKR-GADPN  716 (785)
T ss_pred             hhhcccchhhhhhccchHHHHHHHHh-cCCcchhh-------------hccCCCcchhhhhhcccchhhhhccc-ccccc
Confidence            44567999999999999999999999 89999987             69999999999999999999999998 99999


Q ss_pred             cccCCCCCcHHHHHHhCCCCCHHHHHHHHH
Q 004911          102 VSCGSDRTTALHCAASGGSANVVDVVRLLL  131 (724)
Q Consensus       102 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL  131 (724)
                      +. +.+|.+||++|....+   .+++-+|.
T Consensus       717 a~-~~~~~~~l~~a~~~~~---~d~~~l~~  742 (785)
T KOG0521|consen  717 AF-DPDGKLPLDIAMEAAN---ADIVLLLR  742 (785)
T ss_pred             cc-CccCcchhhHHhhhcc---ccHHHHHh
Confidence            99 9999999999988766   55555444

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=97.47  E-value=6.9e-05  Score=78.34  Aligned_cols=70  Identities=29%  Similarity=0.583  Sum_probs=57.5

Q ss_pred             CccccCCCCCC-CCCcCCC---CCCcccC---CCcccccCC--ccccccccCCCC---CCCCCcc-cccccCCCcccccc
Q 004911          295 FHYSCVPCPDF-RKGACRR---GDMCEYA---HGVFECWLH--PAQYRTRLCKDG---TSCDRRV-CFFAHTAEELRPLY  361 (724)
Q Consensus       295 y~Ys~~~CP~~-rkG~C~~---Gd~C~~a---H~~~E~~~h--P~~yrT~~C~~~---~~C~~~~-C~faH~~~e~r~~~  361 (724)
                      |+--+.+|..| ++|+|+.   |+.|+|+   ||..|+..-  -..|||++|..|   +.|+||. |.|+|+.++.--+|
T Consensus       226 ~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~  305 (351)
T COG5063         226 YKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMY  305 (351)
T ss_pred             hcCCHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhcccc
Confidence            44445889887 6799998   9999999   997776543  567999999999   7899997 99999999888777


Q ss_pred             ccC
Q 004911          362 VSN  364 (724)
Q Consensus       362 ~~~  364 (724)
                      .-+
T Consensus       306 ~~~  308 (351)
T COG5063         306 EEA  308 (351)
T ss_pred             ccc
Confidence            544

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=96.76  E-value=0.00042  Score=73.64  Aligned_cols=68  Identities=29%  Similarity=0.639  Sum_probs=57.0

Q ss_pred             ccCCCCCCCCCcCCCCCC-cccCCCcccccCCccccccccCCCC--CCCCCcccccccCCCccccccccCCCC
Q 004911          298 SCVPCPDFRKGACRRGDM-CEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELRPLYVSNGSV  367 (724)
Q Consensus       298 s~~~CP~~rkG~C~~Gd~-C~~aH~~~E~~~hP~~yrT~~C~~~--~~C~~~~C~faH~~~e~r~~~~~~~~~  367 (724)
                      +...|.+|.+|.|.|+|. |.|+|....+  +-+.-|-..|-|+  +.|.|..|.|+|.+.+++.-|.-+|--
T Consensus        36 ~~eVCReF~rn~C~R~d~~CkfaHP~~~~--~V~~g~v~aC~Ds~kgrCsR~nCkylHpp~hlkdql~ingrn  106 (331)
T KOG2494|consen   36 TLEVCREFLRNTCSRGDRECKFAHPPKNC--QVSNGRVIACFDSQKGRCSRENCKYLHPPQHLKDQLKINGRN  106 (331)
T ss_pred             HHHHHHHHHhccccCCCccccccCCCCCC--CccCCeEEEEeccccCccCcccceecCCChhhhhhhhhcccc
Confidence            446799999999999999 9999997633  3566778889998  789999999999999999877666643

>smart00248 ANK ankyrin repeats

Probab=96.26  E-value=0.0063  Score=39.41  Aligned_cols=27  Identities=48%  Similarity=0.736  Sum_probs=15.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 004911           73 HRTPLMVAATYGSVDVLKLILLHSSADV  100 (724)
Q Consensus        73 G~TPLH~AA~~G~~evVklLLe~~GADV  100 (724)
                      |.||||+|+..|+.+++++||+. +.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~-~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDK-GADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence            45556666555666666665555 4444

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.19  E-value=0.0086  Score=38.76  Aligned_cols=29  Identities=52%  Similarity=0.771  Sum_probs=25.9

Q ss_pred             CCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCC
Q 004911          107 DRTTALHCAASGGSANVVDVVRLLLSAGADPD  138 (724)
Q Consensus       107 ~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n  138 (724)
                      .|.||||+|+..++   .+++++|+++|.+++
T Consensus         1 ~~~~~l~~~~~~~~---~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGN---LEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCC---HHHHHHHHHcCCCCC
Confidence            47899999999999   999999999988765

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.06  E-value=0.012  Score=65.92  Aligned_cols=63  Identities=25%  Similarity=0.360  Sum_probs=54.7

Q ss_pred             HHHHHHHHhcCCCCccccc-----CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHh
Q 004911           86 VDVLKLILLHSSADVNVSC-----GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIV  152 (724)
Q Consensus        86 ~evVklLLe~~GADVN~~~-----d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa  152 (724)
                      .+.|++|.++ +++.|..-     +.--.|+||+|+..|.   .++|.+||+.|+|+..+|..|+||..++.
T Consensus       404 p~~ie~lken-~lsgnf~~~pe~~~~ltsT~LH~aa~qg~---~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKEN-LLSGNFDVTPEANDYLTSTFLHYAAAQGA---RKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhc-CCcccccccccccccccchHHHHHHhcch---HHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            5678899998 88776531     3346799999999999   99999999999999999999999999987

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.84  E-value=0.0019  Score=44.29  Aligned_cols=22  Identities=41%  Similarity=0.771  Sum_probs=11.9

Q ss_pred             cccccCCCC---CCCCCcc-cccccC
Q 004911          332 YRTRLCKDG---TSCDRRV-CFFAHT  353 (724)
Q Consensus       332 yrT~~C~~~---~~C~~~~-C~faH~  353 (724)
                      |||.+|+.|   +.|++|. |.|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            566666654   5666665 666665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.64  E-value=0.04  Score=61.76  Aligned_cols=68  Identities=18%  Similarity=0.068  Sum_probs=53.4

Q ss_pred             HHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHH
Q 004911           39 VEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAA  116 (724)
Q Consensus        39 le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa  116 (724)
                      .+.|.+|.+ ++..+|..       ......+..--|+||+||..|..++|.+||+. |+|+-.. |..|.||..+++
T Consensus       404 p~~ie~lke-n~lsgnf~-------~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~k-d~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKE-NLLSGNFD-------VTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTK-DGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHh-cCCccccc-------ccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhc-ccCCCCcccccc
Confidence            455666666 67776653       11222245567999999999999999999999 8999999 999999999887

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=94.34  E-value=0.029  Score=61.33  Aligned_cols=60  Identities=37%  Similarity=0.709  Sum_probs=45.2

Q ss_pred             CCCCC-CCCcCCCCCCcccCCCc----------ccccCCccccccccCCCC---CCCCC-cc-cccccCCCccccc
Q 004911          301 PCPDF-RKGACRRGDMCEYAHGV----------FECWLHPAQYRTRLCKDG---TSCDR-RV-CFFAHTAEELRPL  360 (724)
Q Consensus       301 ~CP~~-rkG~C~~Gd~C~~aH~~----------~E~~~hP~~yrT~~C~~~---~~C~~-~~-C~faH~~~e~r~~  360 (724)
                      .|-.+ +.+.|..+..|.+.|..          ....--|+.|+|.+|..|   +.|+| +. |.|+|+.+|+|..
T Consensus        88 ~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~  163 (332)
T KOG1677|consen   88 DCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLP  163 (332)
T ss_pred             ccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCccccccc
Confidence            44443 34567777788888775          122223999999999988   78999 87 9999999999954

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=93.68  E-value=0.1  Score=55.28  Aligned_cols=75  Identities=20%  Similarity=0.365  Sum_probs=54.7

Q ss_pred             CCCccCCCCccCccccCCCCCCCC-CcCCCCCCcccCCCcccc---cCCc-cccccccCCCC---CCCCCcc-cccccCC
Q 004911          284 GENARRRDPRKFHYSCVPCPDFRK-GACRRGDMCEYAHGVFEC---WLHP-AQYRTRLCKDG---TSCDRRV-CFFAHTA  354 (724)
Q Consensus       284 ge~arRRdPr~y~Ys~~~CP~~rk-G~C~~Gd~C~~aH~~~E~---~~hP-~~yrT~~C~~~---~~C~~~~-C~faH~~  354 (724)
                      |.+.....-..-.|.+.+|-++.+ |+|+.|..|.|.||-.+.   .-|| ..|+...|+.+   +.|+++- |-|-|..
T Consensus       259 GlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dk  338 (351)
T COG5063         259 GLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDK  338 (351)
T ss_pred             ccccccccccccccccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhcccc
Confidence            444444444556799999999865 899999999999998543   3344 46889999976   7899864 7777765


Q ss_pred             Cccc
Q 004911          355 EELR  358 (724)
Q Consensus       355 ~e~r  358 (724)
                      .-+-
T Consensus       339 kn~~  342 (351)
T COG5063         339 KNLD  342 (351)
T ss_pred             chhh
Confidence            5443

>smart00356 ZnF_C3H1 zinc finger

Probab=93.65  E-value=0.048  Score=36.74  Aligned_cols=23  Identities=39%  Similarity=0.891  Sum_probs=12.4

Q ss_pred             cCCCCCCCCCcCCCCCCcccCCC
Q 004911          299 CVPCPDFRKGACRRGDMCEYAHG  321 (724)
Q Consensus       299 ~~~CP~~rkG~C~~Gd~C~~aH~  321 (724)
                      ..+|+.+..|.|..|+.|.|.|.
T Consensus         4 ~~~C~~~~~g~C~~g~~C~~~H~   26 (27)
T smart00356        4 TELCKFFKRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCcCcCccCCCCCCCCCcCCCCc
Confidence            34555555555555555555553

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.50  E-value=0.013  Score=40.07  Aligned_cols=25  Identities=44%  Similarity=0.986  Sum_probs=18.5

Q ss_pred             cccCCCCCCCC-CcCCCCCCcccCCC
Q 004911          297 YSCVPCPDFRK-GACRRGDMCEYAHG  321 (724)
Q Consensus       297 Ys~~~CP~~rk-G~C~~Gd~C~~aH~  321 (724)
                      |...+|+.+.+ |.|+.|+.|.|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            45678998765 89999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=92.75  E-value=0.07  Score=33.55  Aligned_cols=18  Identities=39%  Similarity=0.851  Sum_probs=15.7

Q ss_pred             cCCCCCCCCCc-ccccccC
Q 004911          336 LCKDGTSCDRR-VCFFAHT  353 (724)
Q Consensus       336 ~C~~~~~C~~~-~C~faH~  353 (724)
                      +|+.|..|+++ .|.|.|.
T Consensus         1 ~Ck~~~~C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPNCTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCCCCCCCcCccCCc
Confidence            58999999999 6999993

>smart00356 ZnF_C3H1 zinc finger

Probab=92.52  E-value=0.11  Score=34.97  Aligned_cols=24  Identities=42%  Similarity=0.674  Sum_probs=20.2

Q ss_pred             ccccccCCCC--CCCCCcc-cccccCC
Q 004911          331 QYRTRLCKDG--TSCDRRV-CFFAHTA  354 (724)
Q Consensus       331 ~yrT~~C~~~--~~C~~~~-C~faH~~  354 (724)
                      .||+.+|+.|  +.|+++. |.|.|..
T Consensus         1 ~~k~~~C~~~~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        1 KYKTELCKFFKRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCCcCcCccCCCCCCCCCcCCCCcC
Confidence            3788899987  7899997 9999963

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=92.50  E-value=0.059  Score=60.37  Aligned_cols=62  Identities=27%  Similarity=0.456  Sum_probs=46.1

Q ss_pred             ccCCCCCCCCC---cCCCCCCcccCCCcccccCC--ccccccccCCCC---CCCCCcc-ccc--ccCCCcccccc
Q 004911          298 SCVPCPDFRKG---ACRRGDMCEYAHGVFECWLH--PAQYRTRLCKDG---TSCDRRV-CFF--AHTAEELRPLY  361 (724)
Q Consensus       298 s~~~CP~~rkG---~C~~Gd~C~~aH~~~E~~~h--P~~yrT~~C~~~---~~C~~~~-C~f--aH~~~e~r~~~  361 (724)
                      .-.+||....|   .|..||+|.|-|.+......  |.+=  -.|.-|   +.|++|+ |+|  +|-..+-+.++
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig--~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~~~~  147 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIG--PSCPVFESLGFCPYGFKCRFLGAHLDIEGNNLI  147 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCcccC--CccceeeccccCCccceeehhhcccCccccchh
Confidence            56789997665   79999999999998666543  2221  347754   8899999 999  67777777543

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=89.56  E-value=0.51  Score=54.91  Aligned_cols=87  Identities=24%  Similarity=0.429  Sum_probs=49.5

Q ss_pred             eccCccCCCCCCCCcccCCCCCc-cCC-----CCccCccccCCCCCCCCCcCCCCCCcccCCCcccc----cCCccccc-
Q 004911          265 RPCSRAYSHDWTECPFVHPGENA-RRR-----DPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFEC----WLHPAQYR-  333 (724)
Q Consensus       265 ~pCsr~~shdwteCpf~H~ge~a-rRR-----dPr~y~Ys~~~CP~~rkG~C~~Gd~C~~aH~~~E~----~~hP~~yr-  333 (724)
                      ..|.......--.|.|+|+-.-. ..-     .+.+..|.-..|..-.+  |.. -.|.|.|+....    -.-|..+. 
T Consensus       545 ~~Cky~~~Ct~a~Ce~~HPtaa~~~~s~p~k~fa~~~~ks~p~Ck~~~k--Cta-sDC~~sH~~~~~pvq~t~ip~~~~~  621 (681)
T KOG3702|consen  545 TRCKYGPACTSAECEFAHPTAAENAKSLPNKKFASKCLKSHPGCKFGKK--CTA-SDCNYSHAGRRIPVQPTRIPPPFPG  621 (681)
T ss_pred             ccccCCCcCCchhhhhcCCcchhhhhccccccccccceecccccccccc--ccc-ccCcccccCCCCCCccccCCCCCCC
Confidence            34555444445567888865420 111     12222333334443333  554 357788886441    22244444 


Q ss_pred             ---cccCCCCCCCCCcccccccCC
Q 004911          334 ---TRLCKDGTSCDRRVCFFAHTA  354 (724)
Q Consensus       334 ---T~~C~~~~~C~~~~C~faH~~  354 (724)
                         +.+|+++++|++..|.|.|-.
T Consensus       622 ~ti~~~CrY~pnCrnm~C~F~HPk  645 (681)
T KOG3702|consen  622 GTIRGLCRYRPNCRNMQCKFYHPK  645 (681)
T ss_pred             CCccccceeccCcCCccccccCCc
Confidence               667999999999999999964

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=88.41  E-value=2.3  Score=43.93  Aligned_cols=114  Identities=12%  Similarity=0.155  Sum_probs=81.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC--
Q 004911           28 TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG--  105 (724)
Q Consensus        28 TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d--  105 (724)
                      -.|-.|+..-+++.+..++...                     .+-.++|-+|..++..+|+-+||.+  ...... |  
T Consensus       155 isledAV~AsN~~~i~~~VtdK---------------------kdA~~Am~~si~~~K~dva~~lls~--f~ft~~-dv~  210 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDK---------------------KDAHQAMWLSIGNAKEDVALYLLSK--FNFTKQ-DVA  210 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcch---------------------HHHHHHHHHHhcccHHHHHHHHHhh--cceecc-hhh
Confidence            3577788888998888888721                     2345889999999999999999986  222222 1  


Q ss_pred             --CCCCcHHHHHHhCCCCCHHHHHHHHHHCC-CCCCC---CCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911          106 --SDRTTALHCAASGGSANVVDVVRLLLSAG-ADPDC---VDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus       106 --~~G~TPLH~Aa~~G~~~~~eiVklLLe~G-Ad~n~---~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                        ..+.--+-++...... ...|+++.|++| +++|.   +-..|.|-|+-|+..++.+++..||+.
T Consensus       211 ~~~~~~ydieY~LS~h~a-~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~  276 (284)
T PF06128_consen  211 SMEKELYDIEYLLSEHSA-SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKY  276 (284)
T ss_pred             hcCcchhhHHHHHhhcCC-cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHc
Confidence              2233345555543321 288999999998 67775   456899999999999997777766664

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=84.95  E-value=0.63  Score=47.18  Aligned_cols=60  Identities=28%  Similarity=0.703  Sum_probs=45.0

Q ss_pred             CCCCcccCCCCCccCCCCccCccccCCCCCCCCCcCCCCCCcccCCCcccccCCccccccccCCCC--CCCCCccccccc
Q 004911          275 WTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAH  352 (724)
Q Consensus       275 wteCpf~H~ge~arRRdPr~y~Ys~~~CP~~rkG~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~--~~C~~~~C~faH  352 (724)
                      ...|-|.|...            .-..||.|..|.|...+.|...|-.     .|.  |--.|++|  +.|+++.|+|.|
T Consensus       221 gaacrfvhept------------rkticpkflngrcnkaedcnlshel-----dpr--ripacryfllgkcnnpncryvh  281 (377)
T KOG1492|consen  221 GAACRFVHEPT------------RKTICPKFLNGRCNKAEDCNLSHEL-----DPR--RIPACRYFLLGKCNNPNCRYVH  281 (377)
T ss_pred             Cceeeeecccc------------ccccChHHhcCccCchhcCCccccc-----Ccc--ccchhhhhhhccCCCCCceEEE
Confidence            34577887432            3468999999999999999998863     232  23359988  889999999998


Q ss_pred             C
Q 004911          353 T  353 (724)
Q Consensus       353 ~  353 (724)
                      -
T Consensus       282 i  282 (377)
T KOG1492|consen  282 I  282 (377)
T ss_pred             E
Confidence            6

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=84.12  E-value=4.6  Score=41.78  Aligned_cols=98  Identities=18%  Similarity=0.130  Sum_probs=70.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHH--cCCHHHHHHHHhcCCCCccc
Q 004911           25 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAAT--YGSVDVLKLILLHSSADVNV  102 (724)
Q Consensus        25 ~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~--~G~~evVklLLe~~GADVN~  102 (724)
                      +-.++|-+|+.++.-+++-+||.+..  +...+        .-++ ..+.--+-++..  ..+..|++++|..+-++||.
T Consensus       178 dA~~Am~~si~~~K~dva~~lls~f~--ft~~d--------v~~~-~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~  246 (284)
T PF06128_consen  178 DAHQAMWLSIGNAKEDVALYLLSKFN--FTKQD--------VASM-EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNK  246 (284)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhcc--eecch--------hhhc-CcchhhHHHHHhhcCCcHHHHHHHHhccccccch
Confidence            34689999999999999999998422  21111        0000 123334444443  34688999999996678886


Q ss_pred             c--cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC
Q 004911          103 S--CGSDRTTALHCAASGGSANVVDVVRLLLSAGAD  136 (724)
Q Consensus       103 ~--~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd  136 (724)
                      .  .-..|.|-|--|...++   .+++.+||++||-
T Consensus       247 ~F~~~NSGdtMLDNA~Ky~~---~emi~~Llk~GA~  279 (284)
T PF06128_consen  247 KFQKVNSGDTMLDNAMKYKN---SEMIAFLLKYGAI  279 (284)
T ss_pred             hhhccCCcchHHHhHHhcCc---HHHHHHHHHcCcc
Confidence            4  24679999999999999   9999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=82.61  E-value=0.67  Score=50.57  Aligned_cols=52  Identities=29%  Similarity=0.628  Sum_probs=32.8

Q ss_pred             ccccCCCCCCCCCcCCCCCCcccCCCcccccCCccccccccCCCC---CCCCCcc-cccccCC
Q 004911          296 HYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCDRRV-CFFAHTA  354 (724)
Q Consensus       296 ~Ys~~~CP~~rkG~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~---~~C~~~~-C~faH~~  354 (724)
                      .+..+.|..|..|.|..||.|.|.|..       ..-|.+.|..|   +.|.++. |.|-|+.
T Consensus        74 ~~~~~vcK~~l~glC~kgD~C~Flhe~-------~~~k~rec~ff~~~g~c~~~~~c~y~h~d  129 (325)
T KOG1040|consen   74 SRGKVVCKHWLRGLCKKGDQCEFLHEY-------DLTKMRECKFFSLFGECTNGKDCPYLHGD  129 (325)
T ss_pred             cCCceeehhhhhhhhhccCcCcchhhh-------hhcccccccccccccccccccCCcccCCC
Confidence            345678888999999999999998852       12233334443   4455532 5555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	724
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-10
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-09
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-08
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-06
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-06
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		8e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-04
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-04

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/140 (37%), Positives = 73/140 (52%), Gaps = 24/140 (17%)
Query: 30  MLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV-------------- 70
           ++E A N + +  K +LE   DP++ D  G   L Y   NG K++V              
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 71  SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
           S+ RTPL  AA  G  +++KL LL   AD N    SD  T LH AA  G     ++V+LL
Sbjct: 68  SDGRTPLHYAAENGHKEIVKL-LLSKGADPNAK-DSDGRTPLHYAAENGHK---EIVKLL 122
Query: 131 LSAGADPDCVDANGHHPIDV 150
           LS GADP+  D++G  P+D+
Sbjct: 123 LSKGADPNTSDSDGRTPLDL 142

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPL +AA  G ++V+KL LL + ADVN    + RT  LH AA  G    ++VV+LLL A
Sbjct: 3   RTPLHLAARNGHLEVVKL-LLEAGADVNAKDKNGRT-PLHLAARNGH---LEVVKLLLEA 57
Query: 134 GADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
           GAD +  D NG  P+ +      L+ ++ +LE
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPL +AA  G ++V+KL LL + ADVN    + RT  LH AA  G    ++VV+LLL A
Sbjct: 3   RTPLHLAARNGHLEVVKL-LLEAGADVNAKDKNGRT-PLHLAARNGH---LEVVKLLLEA 57
Query: 134 GADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
           GAD +  D NG  P+ +      L+ ++ +LE
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 24/140 (17%)
Query: 30  MLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV-------------- 70
           ++E A N + +  K +LE   D ++ D  G   L     NG K++V              
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 71  SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
           S+ +TPL +AA  G  +V+KL LL   AD N    SD  T LH AA  G     +VV+LL
Sbjct: 68  SDGKTPLHLAAENGHKEVVKL-LLSQGADPNAK-DSDGKTPLHLAAENGHK---EVVKLL 122
Query: 131 LSAGADPDCVDANGHHPIDV 150
           LS GADP+  D++G  P+D+
Sbjct: 123 LSQGADPNTSDSDGRTPLDL 142

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 24/140 (17%)
Query: 30  MLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV-------------- 70
           ++E A N + +  K ++E   D ++ D  G   L Y    G K++V              
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 71  SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
           S+ RTPL  AA  G  +++KL L+   ADVN    SD  T LH AA  G     ++V+LL
Sbjct: 68  SDGRTPLHYAAKEGHKEIVKL-LISKGADVNAK-DSDGRTPLHYAAKEGHK---EIVKLL 122
Query: 131 LSAGADPDCVDANGHHPIDV 150
           +S GAD +  D++G  P+D+
Sbjct: 123 ISKGADVNTSDSDGRTPLDL 142

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 24/140 (17%)
Query: 30  MLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV-------------- 70
           ++E A N + +  K ++E   D ++ D  G   L +   NG K++V              
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 71  SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
           S+ RTPL  AA  G  +V+KL L+   ADVN    SD  T LH AA  G     +VV+LL
Sbjct: 68  SDGRTPLHHAAENGHKEVVKL-LISKGADVNAK-DSDGRTPLHHAAENGHK---EVVKLL 122
Query: 131 LSAGADPDCVDANGHHPIDV 150
           +S GAD +  D++G  P+D+
Sbjct: 123 ISKGADVNTSDSDGRTPLDL 142

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 26  SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGS 85
            FT+ +E A    V+  K + +R  +    V L        +++     T LM AA  G 
Sbjct: 125 GFTAFMEAAVYGKVKALKFLYKRGAN----VNLRRKTKEDQERLRKGGATALMDAAEKGH 180
Query: 86  VDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGH 145
           V+VLK++L    ADVN      R   +H   S   ++V  +  LLL  GAD +     G 
Sbjct: 181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 240
Query: 146 HPIDVIVLPPKLDSMRAILEE 166
            P+ + V    L  ++ +LE+
Sbjct: 241 TPLILAVEKKHLGLVQRLLEQ 261

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 69  MVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVR 128
           M  +  TPL VAA YG V V +L LL   A  N + G +  T LH A      N +D+V+
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAEL-LLERDAHPN-AAGKNGLTPLHVAVH---HNNLDIVK 196
Query: 129 LLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVV 176
           LLL  G  P     NG+ P+ +     +++  R++L +  GS N+  V
Sbjct: 197 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAESV 243

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 13/116 (11%)
Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
           TPL +AATYG +++++++L H  ADVN +     +T LH AA  G   +V+V   LL  G
Sbjct: 49  TPLHLAATYGHLEIVEVLLKH-GADVN-AIDIXGSTPLHLAALIGHLEIVEV---LLKHG 103
Query: 135 ADPDCVDANGHHPIDVIVLPPKLDSMRAIL--------EEVFGSKNSSVVVASGAE 182
           AD + VD  G  P+ +  +   L+ +  +L        ++ FG     + + +G E
Sbjct: 104 ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 17/118 (14%)
Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRT--TALHCAASGGSANVVDVVRLLLS 132
           TPL +AA+ G +++++ +LL + ADVN    SD T  T LH AA+ G   +V+V   LL 
Sbjct: 49  TPLHLAASNGHLEIVE-VLLKNGADVN---ASDLTGITPLHLAAATGHLEIVEV---LLK 101
Query: 133 AGADPDCVDANGHHPIDVIVLPPKLDSMRAIL--------EEVFGSKNSSVVVASGAE 182
            GAD +  D +GH P+ +      L+ +  +L        ++ FG     + + +G E
Sbjct: 102 HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 26  SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGS 85
            FT+ +E A    V+  K + +R  +    V L        +++     T LM AA  G 
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGAN----VNLRRKTKEDQERLRKGGATALMDAAEKGH 160
Query: 86  VDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGH 145
           V+VLK++L    ADVN      R   +H   S   ++V  +  LLL  GAD +     G 
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220
Query: 146 HPIDVIVLPPKLDSMRAILEE 166
            P+ + V    L  ++ +LE+
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQ 241

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 13/116 (11%)
Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
           TPL +AATYG +++++++L H  ADVN +     +T LH AA  G   +V+V   LL  G
Sbjct: 49  TPLHLAATYGHLEIVEVLLKH-GADVN-AIDIMGSTPLHLAALIGHLEIVEV---LLKHG 103
Query: 135 ADPDCVDANGHHPIDVIVLPPKLDSMRAIL--------EEVFGSKNSSVVVASGAE 182
           AD + VD  G  P+ +  +   L+ +  +L        ++ FG     + + +G E
Sbjct: 104 ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 64  NGSKQMVSEHR--TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSA 121
           NG+    S+H   TPL +AA +G +++++ +LL + ADVN    S   T LH AA  G  
Sbjct: 36  NGADVNASDHVGWTPLHLAAYFGHLEIVE-VLLKNGADVNAD-DSLGVTPLHLAADRGHL 93
Query: 122 NVVDVVRLLLSAGADPDCVDANGHHPI 148
            VV+V   LL  GAD +  D NG  P+
Sbjct: 94  EVVEV---LLKNGADVNANDHNGFTPL 117

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 16/110 (14%)
Query: 64  NGSKQMVSEHR--TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSA 121
           NGS   V +H   TPL  A  +G + V++L+L H  A VN + G    + LH AA  G  
Sbjct: 32  NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTT-GYQNDSPLHDAAKNGH- 88
Query: 122 NVVDVVRLLLSAGADPDCVDANGHHPID---------VIVLPPKLDSMRA 162
             VD+V+LLLS GA  + V+  G  P+D         +++LP K +S  A
Sbjct: 89  --VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSA 136

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
           TPL +AA  G +++++ +LL + ADVN     D  T LH AA  G   +V+V   LL AG
Sbjct: 70  TPLHLAAREGHLEIVE-VLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEV---LLKAG 124
Query: 135 ADPDCVDANGHHPIDVIV 152
           AD +  D  G  P D+ +
Sbjct: 125 ADVNAQDKFGKTPFDLAI 142

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
           TPL +AA  G +++++ +LL + ADVN     D  T LH AA  G   +V+V   LL AG
Sbjct: 70  TPLHLAAREGHLEIVE-VLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEV---LLKAG 124
Query: 135 ADPDCVDANGHHPIDVIV 152
           AD +  D  G  P D+ +
Sbjct: 125 ADVNAQDKFGKTPFDLAI 142

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
           E  TPLM AA +G + V++  LL + AD  +  G  R +AL  A S G     D+V++LL
Sbjct: 35  EGFTPLMWAAAHGQIAVVEF-LLQNGADPQL-LGKGRESALSLACSKG---YTDIVKMLL 89
Query: 132 SAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
             G D +  D NG  P+   V    +  ++ +LE
Sbjct: 90  DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
           E  TPLM AA +G + V++  LL + AD  +  G  R +AL  A S G     D+V++LL
Sbjct: 51  EGFTPLMWAAAHGQIAVVEF-LLQNGADPQL-LGKGRESALSLACSKG---YTDIVKMLL 105
Query: 132 SAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
             G D +  D NG  P+   V    +  ++ +LE
Sbjct: 106 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 139

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
           E  TPLM AA +G + V++  LL + AD  +  G  R +AL  A S G     D+V++LL
Sbjct: 33  EGFTPLMWAAAHGQIAVVEF-LLQNGADPQL-LGKGRESALSLACSKG---YTDIVKMLL 87
Query: 132 SAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
             G D +  D NG  P+   V    +  ++ +LE
Sbjct: 88  DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 121

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 55  EVGLWYGR-VNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALH 113
           EV L +G  VN + +M     TPL +AA YG +++++ +LL + ADVN +  +   T LH
Sbjct: 64  EVLLKHGADVNAADKMGD---TPLHLAALYGHLEIVE-VLLKNGADVNAT-DTYGFTPLH 118
Query: 114 CAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIV 152
            AA  G   +V+V   LL  GAD +  D  G    D+ +
Sbjct: 119 LAADAGHLEIVEV---LLKYGADVNAQDKFGKTAFDISI 154

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 32/176 (18%)
Query: 23  TEDSFTSMLELASNNDVEGFKRMLER----DPSSVD--------------EVGLWYGRVN 64
           +ED  T ++E A NN +E  K +++     DP   +              EV + Y   N
Sbjct: 41  SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV-VQYLLSN 99
Query: 65  GSKQMVSEHR---TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSA 121
           G   +  +     TP++ A  Y  VD++KL LL   +D+N+   ++    LH AA  G  
Sbjct: 100 GQMDVNCQDDGGWTPMIWATEYKHVDLVKL-LLSKGSDINIR-DNEENICLHWAAFSG-- 155
Query: 122 NVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVV 177
             VD+  +LL+A  D   V+ +G  P+ +     + D +      +F S++S V +
Sbjct: 156 -CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV-----VLFLSRDSDVTL 205

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	724
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-04
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	5e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-10
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-06
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	8e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	6e-13
2rfa_A	232	Transient receptor potential cation channel subfa	2e-12
2rfa_A	232	Transient receptor potential cation channel subfa	4e-12
2rfa_A	232	Transient receptor potential cation channel subfa	1e-11
2rfa_A	232	Transient receptor potential cation channel subfa	6e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-08
2etb_A	256	Transient receptor potential cation channel subfam	2e-10
2etb_A	256	Transient receptor potential cation channel subfam	6e-10
2etb_A	256	Transient receptor potential cation channel subfam	4e-09
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-06
2pnn_A	273	Transient receptor potential cation channel subfa	5e-10
2pnn_A	273	Transient receptor potential cation channel subfa	6e-10
2pnn_A	273	Transient receptor potential cation channel subfa	2e-07
2pnn_A	273	Transient receptor potential cation channel subfa	9e-05
2pnn_A	273	Transient receptor potential cation channel subfa	1e-04
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	1e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-08
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	5e-09
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	7e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-04
2rhk_C	72	Cleavage and polyadenylation specificity factor su	2e-08
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	1e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	9e-05
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	8e-04

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 83.7 bits (208), Expect = 5e-19
 Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 23/129 (17%)

Query: 21  AETEDSFTSMLELASNNDVEGFKRMLER--DPSSVDEVGLWYGRVNGSKQMVSEHRTPLM 78
           +  E S   +   A+   VE  + +LE   +P++ +  G                R P+ 
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYG----------------RRPIQ 50

Query: 79  VAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPD 138
           V    GS  V +L+LLH  A+ N +  +  T  +H AA  G    +D + +L  AGA  D
Sbjct: 51  VMM-MGSARVAELLLLHG-AEPNCADPATLTRPVHDAAREGF---LDTLVVLHRAGARLD 105

Query: 139 CVDANGHHP 147
             DA G  P
Sbjct: 106 VRDAWGRLP 114

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 71.4 bits (176), Expect = 8e-15
 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 11/80 (13%)

Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
            P+  AA  G +D L + L  + A ++V   +     +  A   G     DV R L +A 
Sbjct: 80  RPVHDAAREGFLDTLVV-LHRAGARLDV-RDAWGRLPVDLAEELGH---RDVARYLRAAA 134

Query: 135 ADPDCVDA------NGHHPI 148
                 +        G   I
Sbjct: 135 GGTRGSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 33/115 (28%)

Query: 97  SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK 156
           +A  ++   +     L  AA+ G    V+ VR LL AGA+P+  ++ G  PI        
Sbjct: 4   AAGSSMEPSA---DWLATAAARGR---VEEVRALLEAGANPNAPNSYGRRPI-------- 49

Query: 157 LDSMRAILEEVFGSKNSSVVV----ASGAEHNLTVSIGSSNSDYSSPLLTASASG 207
                           S+ V       GAE N         +  + P+  A+  G
Sbjct: 50  ---QVM-------MMGSARVAELLLLHGAEPNCA-----DPATLTRPVHDAAREG 89

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 7/52 (13%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVD 125
           R P+ +A   G  DV +  L  ++     S            A+ G +++ D
Sbjct: 112 RLPVDLAEELGHRDVARY-LRAAAGGTRGS------NHARIDAAEGPSDIPD 156

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 83.7 bits (208), Expect = 8e-19
 Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 21/112 (18%)

Query: 34  ASNNDVEGFKRMLE-RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI 92
           A   D +   ++LE RD  +VDE G                RT L+  A  GS   ++L 
Sbjct: 52  ARKADEQALSQLLEDRDVDAVDENG----------------RTALLFVAGLGSDKCVRL- 94

Query: 93  LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
           L  + AD++        TALH AA        +VV  L+  GAD +  D  G
Sbjct: 95  LAEAGADLDHRDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERG 143

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 76.8 bits (190), Expect = 2e-16
 Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TP   AA       L   LL    DV+ +   +  TAL   A  GS      VRLL  A
Sbjct: 45  ETPWWTAARKADEQALSQ-LLE-DRDVD-AVDENGRTALLFVAGLGS---DKCVRLLAEA 98

Query: 134 GADPDCVDANG 144
           GAD D  D  G
Sbjct: 99  GADLDHRDMRG 109

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 69.1 bits (170), Expect = 1e-13
 Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 9/71 (12%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
               ++    G          + +ADV     S+  T    AA          +  LL  
Sbjct: 15  AMEYLIEWKDGHSPSWV-PSSYIAADVV----SEYETPWWTAARKAD---EQALSQLLE- 65

Query: 134 GADPDCVDANG 144
             D D VD NG
Sbjct: 66  DRDVDAVDENG 76

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 85.0 bits (211), Expect = 1e-18
 Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 21/112 (18%)

Query: 34  ASNNDVEGFKRMLE-RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI 92
           A   D +   ++LE RD  +VDE G                RT L+  A  GS   ++L+
Sbjct: 53  ARKADEQALSQLLEDRDVDAVDENG----------------RTALLFVAGLGSDKCVRLL 96

Query: 93  LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
                AD++        TALH AA        +VV  L+  GAD +  D  G
Sbjct: 97  AEAG-ADLDHRDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERG 144

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 76.5 bits (189), Expect = 8e-16
 Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 70  VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRL 129
           VSE+ TP   AA       L   LL    DV+     +  TAL   A  GS      VRL
Sbjct: 42  VSEYETPWWTAARKADEQALSQ-LLE-DRDVDAV-DENGRTALLFVAGLGS---DKCVRL 95

Query: 130 LLSAGADPDCVDANG 144
           L  AGAD D  D  G
Sbjct: 96  LAEAGADLDHRDMRG 110

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 9/74 (12%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
               ++    G          + +ADV     S+  T    AA          +  LL  
Sbjct: 16  AMEYLIEWKDGHSPSWVP-SSYIAADVV----SEYETPWWTAARKAD---EQALSQLLE- 66

Query: 134 GADPDCVDANGHHP 147
             D D VD NG   
Sbjct: 67  DRDVDAVDENGRTA 80

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 8/109 (7%), Positives = 18/109 (16%), Gaps = 41/109 (37%)

Query: 64  NGSKQMVS---EH-----------RTPLMVAATYGSVDVLKLILLHSSADVNV------- 102
               ++V    E             T L +A             +     + +       
Sbjct: 121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGN-PMQFGRRIGLEKVINVL 179

Query: 103 ---------------SCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD 136
                            G  +    +           D   +     A+
Sbjct: 180 EGQVFEYAEVDEIVEKRGKGK-DVEYLVRWKDG---GDCEWVKGVHVAE 224

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 6/46 (13%), Positives = 12/46 (26%), Gaps = 4/46 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGG 119
           +    +       D   +  +H  A+       D    L  A +  
Sbjct: 200 KDVEYLVRWKDGGDCEWVKGVH-VAEDVA---KDYEDGLEYAVAES 241

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70

 Score = 77.8 bits (191), Expect = 5e-18
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 302 CPDFRKGACRRGDM-CEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELR 358
           C ++++G C RG+  C +AH      +        +C D     C R  C + H    L+
Sbjct: 9   CREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQ 68

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 79.8 bits (198), Expect = 5e-18
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           R P+ V    GS  V +L+LLH  A+ N +  +  T  +H AA  G    +D + +L  A
Sbjct: 46  RRPIQVMM-MGSAQVAELLLLHG-AEPNCADPATLTRPVHDAAREGF---LDTLVVLHRA 100

Query: 134 GADPDCVDANGHHP 147
           GA  D  DA G  P
Sbjct: 101 GARLDVCDAWGRLP 114

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 75.2 bits (186), Expect = 3e-16
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
              L  AA  G V+ ++  LL + AD N          +     G       V  LLL  
Sbjct: 13  DAGLATAAARGQVETVRQ-LLEAGADPNA-LNRFGRRPIQVMMMGS----AQVAELLLLH 66

Query: 134 GADPDCVDANG 144
           GA+P+C D   
Sbjct: 67  GAEPNCADPAT 77

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 68.2 bits (168), Expect = 6e-14
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
            P+  AA  G +D L + L  + A ++V C +     +  A   G     D+ R L +A 
Sbjct: 80  RPVHDAAREGFLDTLVV-LHRAGARLDV-CDAWGRLPVDLAEEQGH---RDIARYLHAAT 134

Query: 135 AD 136
            D
Sbjct: 135 GD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 59.8 bits (146), Expect = 6e-11
 Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 31/116 (26%)

Query: 97  SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK 156
           S  +++  G      L  AA+ G    V+ VR LL AGADP+ ++  G  PI        
Sbjct: 2   SPGIHML-GGSSDAGLATAAARGQ---VETVRQLLEAGADPNALNRFGRRPI-------- 49

Query: 157 LDSMRAILEEVFGSKNSSVVV----ASGAEHNLTVSIGSSNSDYSSPLLTASASGS 208
                           S+ V       GAE N         +  + P+  A+  G 
Sbjct: 50  ---QVM-------MMGSAQVAELLLLHGAEPNCA-----DPATLTRPVHDAAREGF 90

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 82.3 bits (204), Expect = 6e-18
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            T L  A   G  D+++++    + ++N        TALH AA  G     D+V+LLL+ 
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNIELNQQ-NKLGDTALHAAAWKGY---ADIVQLLLAK 162

Query: 134 GADPDCVDANGHHPIDV 150
           GA  D  +       D+
Sbjct: 163 GARTDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            T L  AA  G  D+++L LL   A  ++    ++  A   A +   A    +++     
Sbjct: 141 DTALHAAAWKGYADIVQL-LLAKGARTDL-RNIEKKLAFDMATNAACA---SLLKKKQGT 195

Query: 134 GADPDCVDANGHHP 147
            A     +A  +  
Sbjct: 196 DAVRTLSNAEDYLD 209

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 10/73 (13%)

Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
              T      + G   ++       S  V           LH AA  G+   +  +R  L
Sbjct: 44  MSDTNWWKGTSKGRTGLIP------SNYVA-EQAESIDNPLHEAAKRGN---LSWLRECL 93

Query: 132 SAGADPDCVDANG 144
                 + +D  G
Sbjct: 94  DNRVGVNGLDKAG 106

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.4 bits (197), Expect = 2e-17
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPLM AA +G + V++  LL + AD  +  G  R +AL  A S G     D+V++LL  
Sbjct: 37  FTPLMWAAAHGQIAVVEF-LLQNGADPQLL-GKGRESALSLACSKGY---TDIVKMLLDC 91

Query: 134 GADPDCVDANG 144
           G D +  D NG
Sbjct: 92  GVDVNEYDWNG 102

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 77.4 bits (192), Expect = 9e-17
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 24/136 (17%)

Query: 28  TSMLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV------------ 70
            S+ +LA+  ++      +E+    +  DE G   L +   +G   +V            
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 71  --SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVR 128
                 + L +A + G  D++K+ LL    DVN     +  T L  A  G     V  V+
Sbjct: 65  LGKGRESALSLACSKGYTDIVKM-LLDCGVDVNE-YDWNGGTPLLYAVHGNH---VKCVK 119

Query: 129 LLLSAGADPDCVDANG 144
           +LL +GADP     +G
Sbjct: 120 MLLESGADPTIETDSG 135

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 77.0 bits (191), Expect = 1e-16
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
              +   A  G +  L    +     +N     +  T L  AA+ G    + VV  LL  
Sbjct: 4   SLSVHQLAAQGEMLYLAT-RIEQENVIN-HTDEEGFTPLMWAAAHGQ---IAVVEFLLQN 58

Query: 134 GADPDCVDANG 144
           GADP  +    
Sbjct: 59  GADPQLLGKGR 69

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 69.0 bits (170), Expect = 7e-14
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL+ A     V  +K+ LL S AD  +        ++  A + G      V +++ S 
Sbjct: 103 GTPLLYAVHGNHVKCVKM-LLESGADPTIE-TDSGYNSMDLAVALGY---RSVQQVIESH 157

Query: 134 GADPD 138
                
Sbjct: 158 LLKLL 162

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.4 bits (197), Expect = 2e-17
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL+ A+ +G ++ ++  LL   AD ++    +R +AL  A++GG     D+V LLL  
Sbjct: 37  FTPLIWASAFGEIETVRF-LLEWGADPHIL-AKERESALSLASTGGY---TDIVGLLLER 91

Query: 134 GADPDCVDANG 144
             D +  D NG
Sbjct: 92  DVDINIYDWNG 102

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 76.3 bits (189), Expect = 2e-16
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            + L +A+T G  D++ L LL    D+N+    +  T L  A  G     V  V  LL+ 
Sbjct: 70  ESALSLASTGGYTDIVGL-LLERDVDINI-YDWNGGTPLLYAVRGNH---VKCVEALLAR 124

Query: 134 GADPDCVDANG 144
           GAD      +G
Sbjct: 125 GADLTTEADSG 135

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 75.9 bits (188), Expect = 3e-16
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL+ A     V  ++  LL   AD+         T +  A + G      V +++ + 
Sbjct: 103 GTPLLYAVRGNHVKCVEA-LLARGADLTTE-ADSGYTPMDLAVALGY---RKVQQVIENH 157

Query: 134 GADPDCVDANGHHP 147
                  +     P
Sbjct: 158 ILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 74.8 bits (185), Expect = 9e-16
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
              +   A  G +D LK  L      VN        T L  A++ G    ++ VR LL  
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVN-KPDERGFTPLIWASAFGE---IETVRFLLEW 58

Query: 134 GADPDCVDANG 144
           GADP  +    
Sbjct: 59  GADPHILAKER 69

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 81.4 bits (202), Expect = 4e-17
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            +P+  AA +G    L+  L+     VN    +D  + LH A  GG    +  V++LL  
Sbjct: 60  WSPMHEAAIHGHQLSLRN-LISQGWAVN-IITADHVSPLHEACLGGH---LSCVKILLKH 114

Query: 134 GADPDCVDANGH 145
           GA  + V A+ H
Sbjct: 115 GAQVNGVTADWH 126

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 79.8 bits (198), Expect = 1e-16
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL +A        +K  LL S ADVN   G  + + LH      S    ++  LL+  
Sbjct: 191 GTPLYLACENQQRACVKK-LLESGADVN--QGKGQDSPLHAVVRTAS---EELACLLMDF 244

Query: 134 GADPDCVDANGHHPIDV 150
           GAD    +A G  P+++
Sbjct: 245 GADTQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 76.0 bits (188), Expect = 3e-15
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 25/158 (15%)

Query: 7   KSESNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLER--DPSSVDEVG---LWYG 61
           +       ++N    +    ++ M E A +      + ++ +    + +       L   
Sbjct: 40  RDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEA 99

Query: 62  RVNGSKQMV--------------SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSD 107
            + G    V              ++  TPL  A   GS D + L+L H  A V     SD
Sbjct: 100 CLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG-ASVQPE--SD 156

Query: 108 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGH 145
             + +H AA  G    V+ V  L++ G + D   ++  
Sbjct: 157 LASPIHEAARRGH---VECVNSLIAYGGNIDHKISHLG 191

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 71.0 bits (175), Expect = 1e-13
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
           +H +PL  A   G +  +K+ LL   A VN    +D  T L  A   GS    D V LLL
Sbjct: 91  DHVSPLHEACLGGHLSCVKI-LLKHGAQVNG-VTADWHTPLFNACVSGS---WDCVNLLL 145

Query: 132 SAGADPDCVDANGHHPI 148
             GA     +++   PI
Sbjct: 146 QHGASVQ-PESDLASPI 161

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.4 bits (145), Expect = 8e-10
 Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 6/66 (9%)

Query: 73  HRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLS 132
             +PL       S ++  L L+   AD      ++    +           +     L  
Sbjct: 222 QDSPLHAVVRTASEELACL-LMDFGADTQAK-NAEGKRPVELVPPESPLAQL----FLER 275

Query: 133 AGADPD 138
            GA   
Sbjct: 276 EGASLP 281

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 82.5 bits (205), Expect = 4e-17
 Identities = 41/150 (27%), Positives = 60/150 (40%), Gaps = 25/150 (16%)

Query: 21  AETEDSFTSMLELASNNDVEGFKRMLER---DPSSVDEVG---LWYGRVNGSKQMVS--- 71
              E     +LE A + + E    +L     +  + D      L         ++V    
Sbjct: 19  LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL 78

Query: 72  EH-----------RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGS 120
           +H             PL  A +YG  +V +L+L H  A VN      + T LH AAS   
Sbjct: 79  QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG-ACVNA-MDLWQFTPLHEAASKNR 136

Query: 121 ANVVDVVRLLLSAGADPDCVDANGHHPIDV 150
              V+V  LLLS GADP  V+ +G   +D+
Sbjct: 137 ---VEVCSLLLSHGADPTLVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 76.0 bits (188), Expect = 6e-15
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL VAA     DV++++  H  A +N +  S   TALH AA  G    +   RLLLS 
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKHG-AKMN-ALDSLGQTALHRAALAGH---LQTCRLLLSY 302

Query: 134 GADPDCVDANG 144
           G+DP  +   G
Sbjct: 303 GSDPSIISLQG 313

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 72.1 bits (178), Expect = 1e-13
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 21  AETEDSFTSMLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMVS---E 72
           A     FT + E AS N VE    +L    DP+ V+  G   +        ++ ++   +
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK 178

Query: 73  HRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLS 132
             + L  A       V K + L               TALHCA +        V  LLL 
Sbjct: 179 GHSLLQAAREADLAKVKKTLALE--IINFKQ-PQSHETALHCAVASLHPKRKQVAELLLR 235

Query: 133 AGADPDCVDANG 144
            GA+ +  + + 
Sbjct: 236 KGANVNEKNKDF 247

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 67.9 bits (167), Expect = 3e-12
 Identities = 31/132 (23%), Positives = 44/132 (33%), Gaps = 22/132 (16%)

Query: 16  NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRT 75
                   E    S+L+ A   D+   K+ L  +                  Q    H T
Sbjct: 168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALE-----------IINFKQPQ---SHET 213

Query: 76  PLMVAATYG---SVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLS 132
            L  A          V +L+L    A+VN     D  T LH AA        DV+ +L  
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKG-ANVN-EKNKDFMTPLHVAAERAH---NDVMEVLHK 268

Query: 133 AGADPDCVDANG 144
            GA  + +D+ G
Sbjct: 269 HGAKMNALDSLG 280

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.8 bits (159), Expect = 2e-11
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           +T L  AA  G +   +L LL   +D ++       TA             + V+ +LS 
Sbjct: 281 QTALHRAALAGHLQTCRL-LLSYGSDPSII-SLQGFTAAQMGN--------EAVQQILSE 330

Query: 134 GADPDCVDANG 144
                  D + 
Sbjct: 331 STPMRTSDVDY 341

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 53.7 bits (130), Expect = 9e-08
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 91  LILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
           L L   SA   ++    +   L  A SG   N   ++ LL     +    D   
Sbjct: 8   LDLADPSAKAVLTGEYKKDELLEAARSG---NEEKLMALLTPLNVNCHASDGRK 58

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 75.5 bits (187), Expect = 7e-17
 Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 5/74 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPL +AA  G ++V+KL LL + ADVN     +  T LH AA  G    ++VV+LLL A
Sbjct: 3   RTPLHLAARNGHLEVVKL-LLEAGADVNA-KDKNGRTPLHLAARNGH---LEVVKLLLEA 57

Query: 134 GADPDCVDANGHHP 147
           GAD +  D NG  P
Sbjct: 58  GADVNAKDKNGRTP 71

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 64.7 bits (159), Expect = 4e-13
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 5/62 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPL +AA  G ++V+KL LL + ADVN     +  T LH AA  G    ++VV+LLL A
Sbjct: 36  RTPLHLAARNGHLEVVKL-LLEAGADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEA 90

Query: 134 GA 135
           GA
Sbjct: 91  GA 92

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 76.1 bits (188), Expect = 7e-17
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 16/98 (16%)

Query: 64  NGSKQMV-----------SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTAL 112
           +                 S+    L+ AA  G  D +++ L+ + ADV  +   + +T L
Sbjct: 4   HHHHHHSSGLVPRGSHMGSDLGKKLLEAARAGQDDEVRI-LMANGADVA-AKDKNGSTPL 61

Query: 113 HCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDV 150
           H AA  G    ++VV+LLL AGAD    D  G    D+
Sbjct: 62  HLAARNGH---LEVVKLLLEAGADVXAQDKFGKTAFDI 96

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 64.9 bits (159), Expect = 6e-13
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 80  AATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC 139
            +++         L+   + +     SD    L  AA  G     D VR+L++ GAD   
Sbjct: 1   GSSHHHHHHSSG-LVPRGSHMG----SDLGKKLLEAARAGQ---DDEVRILMANGADVAA 52

Query: 140 VDANG 144
            D NG
Sbjct: 53  KDKNG 57

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 76.7 bits (190), Expect = 8e-17
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL  A  +G + V++L LL   A VN + G    + LH AA  G    VD+V+LLLS 
Sbjct: 44  WTPLHEACNHGHLKVVEL-LLQHKALVNTT-GYQNDSPLHDAAKNGH---VDIVKLLLSY 98

Query: 134 GADPDCVDANGHHPIDV 150
           GA  + V+  G  P+D 
Sbjct: 99  GASRNAVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 71.3 bits (176), Expect = 6e-15
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVS--CGSDRTTALHCAASGGSANVVDVVRLLL 131
            T L +A+  G +  ++  LL + +D NV    G    T LH A + G    + VV LLL
Sbjct: 11  ETLLHIASIKGDIPSVEY-LLQNGSDPNVKDHAGW---TPLHEACNHGH---LKVVELLL 63

Query: 132 SAGADPDCVDANG 144
              A  +      
Sbjct: 64  QHKALVNTTGYQN 76

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 57.8 bits (141), Expect = 3e-10
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 24/122 (19%)

Query: 34  ASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMVS---EH-----------R 74
           +   D+   + +L+   DP+  D  G   L     +G  ++V    +H            
Sbjct: 18  SIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND 77

Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
           +PL  AA  G VD++KL LL   A  N          +             ++ L     
Sbjct: 78  SPLHDAAKNGHVDIVKL-LLSYGASRNAV-NIFGLRPVDYTDDESM---KSLLLLPEKNE 132

Query: 135 AD 136
           + 
Sbjct: 133 SS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.0 bits (118), Expect = 4e-07
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 5/47 (10%)

Query: 98  ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
            D   +      T LH A+  G    +  V  LL  G+DP+  D  G
Sbjct: 2   IDPFTN--HRGETLLHIASIKGD---IPSVEYLLQNGSDPNVKDHAG 43

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 76.3 bits (189), Expect = 8e-17
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           R PL  AA  G +++L+  LL   AD+N        T L  A   G    V  V+LLLS 
Sbjct: 41  RKPLHYAADCGQLEILEF-LLLKGADINAP-DKHHITPLLSAVYEGH---VSCVKLLLSK 95

Query: 134 GADPDCVDANGHHPIDV 150
           GAD      +G    + 
Sbjct: 96  GADKTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 73.2 bits (181), Expect = 8e-16
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
               M A   G +D +K   +    DVN          LH AA  G    ++++  LL  
Sbjct: 8   DKEFMWALKNGDLDEVKD-YVAKGEDVN-RTLEGGRKPLHYAADCGQ---LEILEFLLLK 62

Query: 134 GADPDCVDANG 144
           GAD +  D + 
Sbjct: 63  GADINAPDKHH 73

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 50.9 bits (123), Expect = 5e-08
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVV 124
            TPL+ A   G V  +KL LL   AD  V  G D  TA     +     ++
Sbjct: 74  ITPLLSAVYEGHVSCVKL-LLSKGADKTV-KGPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
           GS        A   G    +D V+  ++ G D +     G
Sbjct: 4   GSMCDKEFMWALKNGD---LDEVKDYVAKGEDVNRTLEGG 40

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 75.3 bits (184), Expect = 8e-17
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 284 GENARRRDPRKFHYSCVPCPDFRKGACRRGDM-CEYAHGVFECWLHPAQYRTRLCKDGTS 342
           G  A ++  R        C +F++G C RG+  C +AH      +  +     +C D   
Sbjct: 7   GSTATQKLLRTDKLEV--CREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIK 64

Query: 343 --CDRRVCFFAHTAEELR 358
             C R  C + H    L+
Sbjct: 65  GRCMREKCKYFHPPAHLQ 82

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 79.8 bits (198), Expect = 1e-16
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVV-DVVRLLLS 132
            T LM AA  G V+VLK++L    ADVN +C +    AL  A      + V  +  LLL 
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 133 AGADPDCVDANG 144
            GAD +     G
Sbjct: 208 HGADVNVRGERG 219

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 77.1 bits (191), Expect = 9e-16
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
              L+ A     VD+++ +L    A+VN        T LH A         D+V LLL  
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSR---EDIVELLLRH 61

Query: 134 GADPDCVDANG 144
           GADP     NG
Sbjct: 62  GADPVLRKKNG 72

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 76.7 bits (190), Expect = 1e-15
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL  A      D+++L+L H  AD       +  T    AA  GS   V +++L LS 
Sbjct: 40  WTPLHNAVQMSREDIVELLLRHG-ADPV-LRKKNGATPFLLAAIAGS---VKLLKLFLSK 94

Query: 134 GADPDCVDANGH 145
           GAD +  D  G 
Sbjct: 95  GADVNECDFYGF 106

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 76.4 bits (189), Expect = 2e-15
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           +TPL++A     + +++ +L     ++N    SD  TAL  A          +  LL   
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELKL---KKIAELLCKR 275

Query: 134 GADPDCVD 141
           GA  DC D
Sbjct: 276 GASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 75.2 bits (186), Expect = 4e-15
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TP ++AA  GSV +LKL  L   ADVN  C     TA   AA  G    V  ++ L   
Sbjct: 73  ATPFLLAAIAGSVKLLKL-FLSKGADVNE-CDFYGFTAFMEAAVYGK---VKALKFLYKR 127

Query: 134 GADPDCVDANGHHP 147
           GA+ +         
Sbjct: 128 GANVNLRRKTKEDQ 141

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 69.0 bits (170), Expect = 6e-13
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNV---------SCGSDRTTALHCAASGGSANVV 124
            T  M AA YG V  LK +     A+VN+                TAL  AA  G    V
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---V 161

Query: 125 DVVRLLLS-AGADPDCVDANG 144
           +V+++LL   GAD +  D  G
Sbjct: 162 EVLKILLDEMGADVNACDNMG 182

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 65.2 bits (160), Expect = 1e-11
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 74  RTPLMVAATYGSVDVLKLI---LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
           R  L+ A        ++ I   LL   ADVNV  G    T L  A        + +V+ L
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKH---LGLVQRL 238

Query: 131 LS-AGADPDCVDANG 144
           L     + +  D++G
Sbjct: 239 LEQEHIEINDTDSDG 253

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.4 bits (106), Expect = 7e-05
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
           +    L  A        VD+V+ LL  GA+ +  +  G
Sbjct: 4   EDNHLLIKAVQNED---VDLVQQLLEGGANVNFQEEEG 38

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 78.2 bits (194), Expect = 2e-16
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 74  RTPLMVAATYG-SVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLS 132
            TPLM AA    SVD  +L+L  +   VN+     + TALH A   G+     V+ LLL 
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFN-VSVNLGDKYHKNTALHWAVLAGN---TTVISLLLE 198

Query: 133 AGADPDCVDANGH 145
           AGA+ D  +  G 
Sbjct: 199 AGANVDAQNIKGE 211

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 75.9 bits (188), Expect = 1e-15
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            T L  AA    +D++K   +   A V+   G   +T LH A   G    + +V  L+  
Sbjct: 43  VTLLHWAAINNRIDLVKY-YISKGAIVDQLGGDLNSTPLHWATRQGH---LSMVVQLMKY 98

Query: 134 GADPDCVDANG 144
           GADP  +D  G
Sbjct: 99  GADPSLIDGEG 109

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 73.2 bits (181), Expect = 1e-14
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL  A   G + ++   L+   AD ++    +  + +H AA  G      +V  L++ 
Sbjct: 77  STPLHWATRQGHLSMVVQ-LMKYGADPSL-IDGEGCSCIHLAAQFGH---TSIVAYLIAK 131

Query: 134 GADPDCVDANG 144
           G D D +D NG
Sbjct: 132 GQDVDMMDQNG 142

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.5 bits (179), Expect = 2e-14
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
              ++ A  YG  +  +  L+ +  DV      +  T LH AA       +D+V+  +S 
Sbjct: 10  TWDIVKATQYGIYERCRE-LVEAGYDVR-QPDKENVTLLHWAAINNR---IDLVKYYISK 64

Query: 134 GADPDCVDAN 143
           GA  D +  +
Sbjct: 65  GAIVDQLGGD 74

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.8 bits (159), Expect = 7e-12
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            T L  A   G+  V+ L LL + A+V+ +      +AL  A    +   V ++  L  A
Sbjct: 178 NTALHWAVLAGNTTVISL-LLEAGANVD-AQNIKGESALDLAKQRKN---VWMINHLQEA 232

Query: 134 GADPD 138
                
Sbjct: 233 RQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.4 bits (114), Expect = 6e-06
 Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
             T  +  A   G     +  R L+ AG D    D   
Sbjct: 8   YSTWDIVKATQYGI---YERCRELVEAGYDVRQPDKEN 42

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 78.0 bits (193), Expect = 3e-16
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            T L +A+ +G + +++L++    ADVN     +  TALH A    +    D+V LLL  
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQN---PDLVSLLLKC 173

Query: 134 GADPDCVDANGH 145
           GAD + V   G+
Sbjct: 174 GADVNRVTYQGY 185

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 23/147 (15%)

Query: 67  KQMVSEH-RTPLMVAATYGSVDVLKLI---LLHSSADVNVSCGSDRTTALHCAASGGSAN 122
           KQ ++E   + L +A  +    +   +   +    A +N    + + T LH A       
Sbjct: 1   KQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQ-- 57

Query: 123 VVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNS-SVVVASGA 181
             ++   LL AG DP+  D  G+ P+             A  +   G   S  V+  S  
Sbjct: 58  -PEIAEALLGAGCDPELRDFRGNTPL-----------HLACEQ---GCLASVGVLTQSCT 102

Query: 182 EHNLTVSIGSSNSDYSSPLLTASASGS 208
             +L   + ++N +  + L  AS  G 
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGY 129

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 68.3 bits (168), Expect = 5e-13
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 5/74 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RT L +A    + D++ L+L    ADVN        +         S     + + L   
Sbjct: 152 RTALHLAVDLQNPDLVSLLLKCG-ADVN-RVTYQGYSPYQLTWGRPS---TRIQQQLGQL 206

Query: 134 GADPDCVDANGHHP 147
             +   +       
Sbjct: 207 TLENLQMLPESEDE 220

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRT-----TALHCAASGGSANVVDVVR 128
            TPL +A   G +  + ++        ++      T     T LH A+  G    + +V 
Sbjct: 79  NTPLHLACEQGCLASVGVLTQS-CTTPHLHSILKATNYNGHTCLHLASIHGY---LGIVE 134

Query: 129 LLLSAGADPDCVD 141
           LL+S GAD +  +
Sbjct: 135 LLVSLGADVNAQE 147

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 75.5 bits (187), Expect = 3e-16
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 19/117 (16%)

Query: 28  TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVD 87
             +   A+  DV+  +R+L R+    D +   +G+            T L V   +GS  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALN-RFGK------------TALQVMM-FGSTA 49

Query: 88  VLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
           +   +L    A  NV   +  T+ +H AA  G    +D +++L+  GAD +  D  G
Sbjct: 50  IALELLKQG-ASPNVQD-TSGTSPVHDAARTGF---LDTLKVLVEHGADVNVPDGTG 101

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 61.3 bits (150), Expect = 2e-11
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 35/141 (24%)

Query: 11  NTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNG 65
           +  +     TA         L++           +L++   P+  D  G   +      G
Sbjct: 30  DALN-RFGKTA---------LQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79

Query: 66  SKQMVS---EH-----------RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTA 111
               +    EH             P+ +A   G   V+  +     +D++    +   T 
Sbjct: 80  FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRR-DARGLTP 136

Query: 112 LHCAASGGSANVVDVVRLLLS 132
           L  A   G+    D+V +L  
Sbjct: 137 LELALQRGA---QDLVDILQG 154

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL VA  +   ++++L+     AD+N    +   T LH A    +     V+ LLL A
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQA---ASVLELLLKA 214

Query: 134 GADPDCVDANG 144
           GADP      G
Sbjct: 215 GADPTARMYGG 225

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.3 bits (181), Expect = 2e-14
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 10/135 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           +T L +AA  G    ++ +     A V V       TALH A    +        +LL  
Sbjct: 46  QTALHLAAILGEASTVEKLYAAG-AGVLV-AERGGHTALHLACRVRA---HTCACVLLQP 100

Query: 134 GADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSN 193
                   ++ +        P    +  A+  +       +       +    + + + N
Sbjct: 101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ---PNPENEEEPRDEDWR--LQLEAEN 155

Query: 194 SDYSSPLLTASASGS 208
            D  +PL  A     
Sbjct: 156 YDGHTPLHVAVIHKD 170

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.3 bits (181), Expect = 2e-14
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPL +A    +  VL+L+L    AD   +      T L  A    +     + RLL + 
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAG-ADPT-ARMYGGRTPLGSALLRPN---PILARLLRAH 247

Query: 134 GADPDCVDANG 144
           GA       + 
Sbjct: 248 GAPEPEDGGDK 258

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 72.6 bits (179), Expect = 4e-14
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLH--SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
            T L +A  +     L  +L        +++       TALH AA  G       V  L 
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQ-NDLGQTALHLAAILGE---ASTVEKLY 65

Query: 132 SAGADPDCVDANGH 145
           +AGA     +  GH
Sbjct: 66  AAGAGVLVAERGGH 79

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 53.3 bits (129), Expect = 7e-08
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVD 125
           RTPL  A    +  + +L L    A      G D+ +    + S   ++  D
Sbjct: 226 RTPLGSALLRPNPILARL-LRAHGAPEP-EDGGDKLSPCSSSGSDSDSDNRD 275

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 74.3 bits (184), Expect = 4e-16
 Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPL +AA  G ++V+KL LL + ADVN     +  T LH AA  G    ++VV+LLL A
Sbjct: 3   RTPLHLAARNGHLEVVKL-LLEAGADVNA-KDKNGRTPLHLAARNGH---LEVVKLLLEA 57

Query: 134 GADPDCVDANG 144
           GAD +  D NG
Sbjct: 58  GADVNAKDKNG 68

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.9 bits (183), Expect = 6e-16
 Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPL +AA  G ++V+KL LL + ADVN     +  T LH AA  G    ++VV+LLL A
Sbjct: 36  RTPLHLAARNGHLEVVKL-LLEAGADVNA-KDKNGRTPLHLAARNGH---LEVVKLLLEA 90

Query: 134 GADPDCVDANG 144
           GAD +  D NG
Sbjct: 91  GADVNAKDKNG 101

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 63.5 bits (156), Expect = 2e-12
 Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 5/62 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPL +AA  G ++V+KL LL + ADVN +   +  T LH AA  G    ++VV+LLL A
Sbjct: 69  RTPLHLAARNGHLEVVKL-LLEAGADVN-AKDKNGRTPLHLAARNGH---LEVVKLLLEA 123

Query: 134 GA 135
           GA
Sbjct: 124 GA 125

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.7 bits (195), Expect = 4e-16
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 23/128 (17%)

Query: 25  DSFTSMLELASNNDVEGFKRMLER--DPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAAT 82
           D     L   S+ D E   R+LER  D +  +  GL                T L  A  
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGL----------------TALHQACI 82

Query: 83  YGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDA 142
             +VD++K ++ +  A++N    ++    LH AAS G    +D+   L+S GA    V++
Sbjct: 83  DDNVDMVKFLVENG-ANIN-QPDNEGWIPLHAAASCGY---LDIAEYLISQGAHVGAVNS 137

Query: 143 NGHHPIDV 150
            G  P+D+
Sbjct: 138 EGDTPLDI 145

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.0 bits (188), Expect = 4e-15
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            T L VAA  G  +VLKL++     DVN+    D  T LH AA  G     +  R+L+  
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQAR-YDVNI-KDYDGWTPLHAAAHWGK---EEACRILVEN 254

Query: 134 GADPDCVDANGHHPIDV 150
             D + V+  G    DV
Sbjct: 255 LCDMEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 66.0 bits (162), Expect = 6e-12
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 71  SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
           ++ +    +    GS   L+  ++       V    D       A S G     + V  L
Sbjct: 6   AKQKRNEQLKRWIGSETDLEPPVVK-RKKTKVK--FDDGAVFLAACSSGD---TEEVLRL 59

Query: 131 LSAGADPDCVDANG 144
           L  GAD +  + +G
Sbjct: 60  LERGADINYANVDG 73

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 54.4 bits (132), Expect = 4e-08
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL +A      ++L+  +     D+          A           + D  + L S 
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIE--------AARKEEE---RIMLRDARQWLNSG 188

Query: 134 GADPDCVDANG 144
             +      +G
Sbjct: 189 HINDVRHAKSG 199

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL  AA +G  +  ++++ +   D+  +      TA   A       + +   L    
Sbjct: 233 WTPLHAAAHWGKEEACRILVENL-CDME-AVNKVGQTAFDVADEDILGYLEE---LQKKQ 287

Query: 134 GAD 136
              
Sbjct: 288 NLL 290

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.0 bits (193), Expect = 6e-16
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            +    A    +V ++   LL++ A  N+    +    LH AA+        +V++LL +
Sbjct: 32  HSASYYAIADNNVRLVCT-LLNAGALKNLL---ENEFPLHQAATLED---TKIVKILLFS 84

Query: 134 GADPDCVDANGH 145
           G D    D  G+
Sbjct: 85  GLDDSQFDDKGN 96

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 9/79 (11%), Positives = 25/79 (31%), Gaps = 8/79 (10%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            + + +    G VD++ L+L +     N +        +  A        +++++ L   
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKD---IEMLQALFKY 217

Query: 134 GADPDCVD----ANGHHPI 148
             +    +          I
Sbjct: 218 DINIYSANLENVLLDDAEI 236

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.9 bits (180), Expect = 3e-14
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           +T    A     V ++    L           +   + +H     G    VD++ LLL  
Sbjct: 130 KTSFYHAVMLNDVSIVSY-FLSEIPSTFDL--AILLSCIHITIKNGH---VDMMILLLDY 183

Query: 134 GADPDCVDANG 144
               +  ++  
Sbjct: 184 MTSTNTNNSLL 194

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 71.4 bits (176), Expect = 8e-14
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 5/72 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            T L  A   G++  +KL +  +   +     +   T+ + A        V +V   LS 
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVMLND---VSIVSYFLSE 151

Query: 134 GADPDCVDANGH 145
                   A   
Sbjct: 152 IPSTF-DLAILL 162

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 6/76 (7%), Positives = 22/76 (28%), Gaps = 13/76 (17%)

Query: 74  RTP-LMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLS 132
             P + +A     +++L+  L     ++         +A             ++ ++++ 
Sbjct: 195 FIPDIKLAIDNKDIEMLQA-LFKYDINIY--------SANLENVLLDD---AEIAKMIIE 242

Query: 133 AGADPDCVDANGHHPI 148
              +           I
Sbjct: 243 KHVEYKSDSYTKDLDI 258

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 75.6 bits (187), Expect = 8e-16
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSA--NVVDVVRLLL 131
              L+ AA  G +D +KL+L     D++        TAL  A           D+V+LL+
Sbjct: 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQ-NDFGYTALIEAVGLREGNQLYQDIVKLLM 165

Query: 132 SAGADPDCVDANG 144
             GAD    D +G
Sbjct: 166 ENGADQSIKDNSG 178

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 72.9 bits (180), Expect = 7e-15
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 39/163 (23%)

Query: 64  NGSKQMV--------------SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRT 109
           N   ++               S   +P + A   G  ++L  +L H++ D+N        
Sbjct: 49  NNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH-NRYGG 107

Query: 110 TALHCAASGGSANVVDVVRLLLSAG-ADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVF 168
            AL  AA  G    +D V+LLL  G  D D  +  G+  +           + A+     
Sbjct: 108 NALIPAAEKGH---IDNVKLLLEDGREDIDFQNDFGYTAL-----------IEAVGLREG 153

Query: 169 GSKNSSVV---VASGAEHNLTVSIGSSNSDYSSPLLTASASGS 208
                 +V   + +GA+ ++       ++   + +  A+  G 
Sbjct: 154 NQLYQDIVKLLMENGADQSIK------DNSGRTAMDYANQKGY 190

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 71.7 bits (177), Expect = 2e-14
 Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
              L  A    +  V +++   +   V+    ++  T L+ A        +++ + L+  
Sbjct: 7   GALLEAANQRDTKKVKEILQDTT-YQVD-EVDTEGNTPLNIAVHNND---IEIAKALIDR 61

Query: 134 GADPDCVDANG 144
           GAD +  ++  
Sbjct: 62  GADINLQNSIS 72

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 65.9 bits (162), Expect = 2e-12
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL +A     +++ K  L+   AD+N    S   +    A + G     +++  +L  
Sbjct: 40  NTPLNIAVHNNDIEIAKA-LIDRGADIN-LQNSISDSPYLYAGAQGR---TEILAYMLKH 94

Query: 134 GA-DPDCVDANG 144
              D +  +  G
Sbjct: 95  ATPDLNKHNRYG 106

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 74  RTPLMVAATY-----GSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVR 128
            T L+ A           D++KL L+ + AD ++   +   TA+  A   G     ++ +
Sbjct: 141 YTALIEAVGLREGNQLYQDIVKL-LMENGADQSI-KDNSGRTAMDYANQKGY---TEISK 195

Query: 129 LLLS 132
           +L  
Sbjct: 196 ILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.4 bits (114), Expect = 3e-06
 Identities = 24/107 (22%), Positives = 33/107 (30%), Gaps = 32/107 (29%)

Query: 107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE 166
           +    L  A    +     V  +L       D VD  G+ P+             A    
Sbjct: 5   EVGALLEAANQRDT---KKVKEILQDTTYQVDEVDTEGNTPL-----------NIA---- 46

Query: 167 VFGSKNSSVVVA-----SGAEHNLTVSIGSSNSDYSSPLLTASASGS 208
                N+ + +A      GA+ NL       NS   SP L A A G 
Sbjct: 47  ---VHNNDIEIAKALIDRGADINLQ------NSISDSPYLYAGAQGR 84

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 73.2 bits (181), Expect = 8e-16
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL  AA  G  + +K  LL   ADVN +   D  T LH AA  G     ++V+LLL+ 
Sbjct: 10  NTPLHNAAKNGHAEEVKK-LLSKGADVN-ARSKDGNTPLHLAAKNGH---AEIVKLLLAK 64

Query: 134 GADPDCVDANG 144
           GAD +    +G
Sbjct: 65  GADVNARSKDG 75

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 72.4 bits (179), Expect = 1e-15
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL +AA  G  +++KL+L    ADVN     D  T  H A   G     ++V+LL + 
Sbjct: 43  NTPLHLAAKNGHAEIVKLLLAKG-ADVNAR-SKDGNTPEHLAKKNGH---HEIVKLLDAK 97

Query: 134 GADPDCVDANGHHP 147
           GAD +       H 
Sbjct: 98  GADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 46.2 bits (111), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
           D  T LH AA  G     + V+ LLS GAD +    +G
Sbjct: 8   DGNTPLHNAAKNGH---AEEVKKLLSKGADVNARSKDG 42

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.5 bits (197), Expect = 9e-16
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 24/146 (16%)

Query: 21  AETEDSFTSMLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV----- 70
              E   T +   +    +   K +L+R   P+  +      L      G  ++      
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 71  ---------SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSA 121
                     + +TPL  AA  G  +++KL LL ++A+ N++  +   T LH AA  G  
Sbjct: 69  NKAKVNAKAKDDQTPLHCAARIGHTNMVKL-LLENNANPNLA-TTAGHTPLHIAAREGH- 125

Query: 122 NVVDVVRLLLSAGADPDCVDANGHHP 147
             V+ V  LL   A   C+   G  P
Sbjct: 126 --VETVLALLEKEASQACMTKKGFTP 149

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.1 bits (196), Expect = 1e-15
 Identities = 33/138 (23%), Positives = 48/138 (34%), Gaps = 30/138 (21%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL VA+  G + ++K  LL   A  N        T LH AA  G     +V + LL  
Sbjct: 15  LTPLHVASFMGHLPIVKN-LLQRGASPN-VSNVKVETPLHMAARAGH---TEVAKYLLQN 69

Query: 134 GADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVV---VASGAEHNLTVSIG 190
            A  +    +   P+             A      G  N  +V   + + A  NL     
Sbjct: 70  KAKVNAKAKDDQTPL-----------HCAARI---GHTN--MVKLLLENNANPNLA---- 109

Query: 191 SSNSDYSSPLLTASASGS 208
              +   +PL  A+  G 
Sbjct: 110 --TTAGHTPLHIAAREGH 125

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 78.3 bits (194), Expect = 2e-15
 Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL +AA  G V+ +   LL   A           T LH AA  G    V V  LLL  
Sbjct: 114 HTPLHIAAREGHVETVLA-LLEKEASQA-CMTKKGFTPLHVAAKYGK---VRVAELLLER 168

Query: 134 GADPDCVDANG 144
            A P+    NG
Sbjct: 169 DAHPNAAGKNG 179

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.5 bits (192), Expect = 3e-15
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL VA  + ++D++KL LL      + S   +  T LH AA       V+V R LL  
Sbjct: 180 LTPLHVAVHHNNLDIVKL-LLPRGGSPH-SPAWNGYTPLHIAAKQNQ---VEVARSLLQY 234

Query: 134 GADPDCVDANG 144
           G   +     G
Sbjct: 235 GGSANAESVQG 245

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 76.8 bits (190), Expect = 5e-15
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL VA+ YG++ ++K  LL   ADVN +      + LH AA  G     D+V LLL  
Sbjct: 312 YTPLHVASHYGNIKLVKF-LLQHQADVN-AKTKLGYSPLHQAAQQGH---TDIVTLLLKN 366

Query: 134 GADPDCVDANG 144
           GA P+ V ++G
Sbjct: 367 GASPNEVSSDG 377

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 76.4 bits (189), Expect = 7e-15
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL +AA  G  +++ L LL   A+ N+       T LH  A  G    V V  +L+  
Sbjct: 246 VTPLHLAAQEGHAEMVAL-LLSKQANGNL-GNKSGLTPLHLVAQEGH---VPVADVLIKH 300

Query: 134 GADPDCVDANG 144
           G   D     G
Sbjct: 301 GVMVDATTRMG 311

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.5 bits (184), Expect = 3e-14
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL + A  G V V  +++ H    V+ +      T LH A+  G+   + +V+ LL  
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHG-VMVD-ATTRMGYTPLHVASHYGN---IKLVKFLLQH 333

Query: 134 GADPDCVDANGHHP 147
            AD +     G+ P
Sbjct: 334 QADVNAKTKLGYSP 347

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.0 bits (175), Expect = 4e-13
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            +PL  AA  G  D++ L LL + A  N    SD TT L  A   G  +V DV++++   
Sbjct: 345 YSPLHQAAQQGHTDIVTL-LLKNGASPNE-VSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402

Query: 134 GADPDCVDANGHHPIDVI 151
            +     D +     + +
Sbjct: 403 TSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.4 bits (132), Expect = 6e-08
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 98  ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHP 147
                  G    T LH A+  G    + +V+ LL  GA P+  +     P
Sbjct: 5   ISGG-GGGESGLTPLHVASFMGH---LPIVKNLLQRGASPNVSNVKVETP 50

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 76.0 bits (188), Expect = 1e-15
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            T L VA      + ++L+L    AD++        + L  A    S   + +V+LLL  
Sbjct: 117 LTALHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVENNS---LSMVQLLLQH 172

Query: 134 GADPDCVDANG 144
           GA+ +    +G
Sbjct: 173 GANVNAQMYSG 183

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 72.5 bits (179), Expect = 2e-14
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 74  RTPLMVAATYGSVDVLKLIL---LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
            TPL +A   G++  +  ++        +++    + R T LH A          VVRLL
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTL---PSVVRLL 65

Query: 131 LSAGADPDCVDANG 144
           ++AGA P  +D +G
Sbjct: 66  VTAGASPMALDRHG 79

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 72.5 bits (179), Expect = 2e-14
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           R+PL+ A    S+ +++L+L H  A+VN +     ++ALH A+  G    + +VR L+ +
Sbjct: 151 RSPLIHAVENNSLSMVQLLLQHG-ANVN-AQMYSGSSALHSASGRGL---LPLVRTLVRS 205

Query: 134 GADPDCVDANGH 145
           GAD    + +  
Sbjct: 206 GADSSLKNCHND 217

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 68.2 bits (168), Expect = 5e-13
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 74  RTPLMVAATYGSVDVLKLILLH---SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
           +T   +A  + S   L+ +L      + D+      D  TALH A +       + V+LL
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR-NYDGLTALHVAVNTEC---QETVQLL 135

Query: 131 LSAGADPDCVDAN 143
           L  GAD D VD  
Sbjct: 136 LERGADIDAVDIK 148

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 62.9 bits (154), Expect = 4e-11
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            + L  A+  G + +++  L+ S AD ++       T L  A S      +D++R   + 
Sbjct: 184 SSALHSASGRGLLPLVRT-LVRSGADSSLK-NCHNDTPLMVARSRRV---IDILRGKATR 238

Query: 134 GA 135
            A
Sbjct: 239 PA 240

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 74.4 bits (184), Expect = 1e-15
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            +PL  A   G   V++++++   A +NV       T LH AAS G     D+V+ LL  
Sbjct: 40  FSPLHWACREGRSAVVEMLIMRG-ARINVM-NRGDDTPLHLAASHGH---RDIVQKLLQY 94

Query: 134 GADPDCVDANG 144
            AD + V+ +G
Sbjct: 95  KADINAVNEHG 105

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 72.1 bits (178), Expect = 8e-15
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
           E    +      G+   ++L L ++  D+N        + LH A   G      VV +L+
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLN-QGDDHGFSPLHWACREGR---SAVVEMLI 59

Query: 132 SAGADPDCVDANGHHP 147
             GA  + ++     P
Sbjct: 60  MRGARINVMNRGDDTP 75

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 70.5 bits (174), Expect = 3e-14
 Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 25/148 (16%)

Query: 23  TEDSFTSMLELASNNDVEGFKRMLER---DPSSVDEVG---LWYGRVNGSKQMVS---EH 73
           + +    +       +    +  L+    D +  D+ G   L +    G   +V      
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 74  -----------RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSAN 122
                       TPL +AA++G  D+++  LL   AD+N          LH A   G   
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQK-LLQYKADINA-VNEHGNVPLHYACFWGQ-- 117

Query: 123 VVDVVRLLLSAGADPDCVDANGHHPIDV 150
              V   L++ GA     +  G  P+D 
Sbjct: 118 -DQVAEDLVANGALVSICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 67.1 bits (165), Expect = 4e-13
 Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 10/77 (12%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
             PL  A  +G   V + ++ +  A V++ C       +  A +        +       
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANG-ALVSI-CNKYGEMPVDKAKAPLRE---LLRERAEKM 160

Query: 134 GADPDCVDA-----NGH 145
           G + + +        G 
Sbjct: 161 GQNLNRIPYKDTFWKGT 177

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RT L  AA   ++ ++K ++    ++ +     D  T +  AA  G    ++VV  L+  
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNKD-KQDEDGKTPIMLAAQEGR---IEVVMYLIQQ 335

Query: 134 GADPDCVDANGH 145
           GA  + VDA  H
Sbjct: 336 GASVEAVDATDH 347

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.4 bits (181), Expect = 5e-14
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSS-------ADVNVSCGSDRTTALHCAASGGSANVVDV 126
           RT L   A+  S +  + +++H +       ADVN +   D  T L  A          +
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AMDCDENTPLMLAVLARR---RRL 181

Query: 127 VRLLLSAGADPDCVDANG 144
           V  L+ AGADP   + + 
Sbjct: 182 VAYLMKAGADPTIYNKSE 199

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.7 bits (179), Expect = 8e-14
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSS--ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
           R+ L  AA      ++  +L  +    D+      +  TAL   A     + V   +LL+
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRNGMTALMIVAHNEGRDQVASAKLLV 258

Query: 132 SAGADPDCVDANGHHPID 149
             GA  D   A       
Sbjct: 259 EKGAKVDYDGAARKDSEK 276

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           +TP+M+AA  G ++V+  ++    A V  +  +   TA   A +       ++V +    
Sbjct: 314 KTPIMLAAQEGRIEVVMYLIQQG-ASVE-AVDATDHTARQLAQANNH---HNIVDIFDRC 368

Query: 134 GADPD 138
             + +
Sbjct: 369 RPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 27/155 (17%)

Query: 9   ESNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQ 68
               E+ N  +      S  S+LE + +  ++  +  L+             G  NG+  
Sbjct: 20  PMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHY----SLYPNPQGYGNGNDF 75

Query: 69  MV--------------SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHC 114
           +                E    L   A  GS  + + I   S  ++         T LH 
Sbjct: 76  LGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRES-VNIIDP--RHNRTVLHW 131

Query: 115 AASGGSANVV-----DVVRLLLSAGADPDCVDANG 144
            AS  SA           +  ++AGAD + +D + 
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE 166

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.8 bits (185), Expect = 3e-15
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           R+PL  AA  G VD+  + L+ + A+++ +C  D+ T L  AA       ++ V+ L+ A
Sbjct: 12  RSPLHAAAEAGHVDICHM-LVQAGANID-TCSEDQRTPLMEAAENNH---LEAVKYLIKA 66

Query: 134 GADPDCVDANG 144
           GA  D  DA G
Sbjct: 67  GALVDPKDAEG 77

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 73.6 bits (182), Expect = 7e-15
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            T L +AA  G  +V++ +L +   DVN        T +  A        VD+V+LLLS 
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVNC-QDDGGWTPMIWATEYKH---VDLVKLLLSK 133

Query: 134 GADPDCVDANG 144
           G+D +  D   
Sbjct: 134 GSDINIRDNEE 144

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 73.6 bits (182), Expect = 8e-15
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TP++ A  Y  VD++KL+L    +D+N+   ++    LH AA  G    VD+  +LL+A
Sbjct: 112 WTPMIWATEYKHVDLVKLLLSKG-SDINIR-DNEENICLHWAAFSGC---VDIAEILLAA 166

Query: 134 GADPDCVDANG 144
             D   V+ +G
Sbjct: 167 KCDLHAVNIHG 177

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 73.2 bits (181), Expect = 1e-14
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
              L  AA  G VD+ ++ LL +  D++ +      + LH AA        D V L LS 
Sbjct: 145 NICLHWAAFSGCVDIAEI-LLAAKCDLH-AVNIHGDSPLHIAARENR---YDCVVLFLSR 199

Query: 134 GADPDCVDANG 144
            +D    +  G
Sbjct: 200 DSDVTLKNKEG 210

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.1 bits (173), Expect = 1e-13
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPLM AA    ++ +K  L+ + A V+    ++ +T LH AA  G     +VV+ LLS 
Sbjct: 45  RTPLMEAAENNHLEAVKY-LIKAGALVD-PKDAEGSTCLHLAAKKGH---YEVVQYLLSN 99

Query: 134 GA-DPDCVDANG 144
           G  D +C D  G
Sbjct: 100 GQMDVNCQDDGG 111

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.4 bits (158), Expect = 1e-11
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            +PL +AA     D + L L    +DV +    +  T L CA+       V     +  A
Sbjct: 178 DSPLHIAARENRYDCVVLFLSR-DSDVTLK-NKEGETPLQCASLNSQ---VWSALQMSKA 232

Query: 134 GAD 136
             D
Sbjct: 233 LQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.7 bits (120), Expect = 8e-07
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 98  ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
            +  +    ++ + LH AA  G    VD+  +L+ AGA+ D    + 
Sbjct: 2   MNFKME-HQNKRSPLHAAAEAGH---VDICHMLVQAGANIDTCSEDQ 44

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 73.8 bits (182), Expect = 5e-15
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 21/150 (14%)

Query: 17  NNSTAETEDSFTSMLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV- 70
             +     +    +L+ A   ++E  ++ ++   DPS  +E G   L       +  +V 
Sbjct: 12  RKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVD 71

Query: 71  -------------SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAAS 117
                        S   TPL  AA+     +    L+   A +  +  SD  TA      
Sbjct: 72  FLITAGANVNSPDSHGWTPLHCAASCNDTVICMA-LVQHGAAIFATTLSDGATAFEKCDP 130

Query: 118 GGSANVVDVVRLLLSAGADPDCVDANGHHP 147
                  D    L         +++   + 
Sbjct: 131 YRE-GYADCATYLADVEQSMGLMNSGAVYA 159

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 70.8 bits (174), Expect = 6e-14
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 63  VNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSAN 122
              +++        L+ AA  G ++V++  +     D +     +  TALH A  G +  
Sbjct: 11  PRKARRARLNPLVLLLDAALTGELEVVQQAVKEM-NDPS-QPNEEGITALHNAICGAN-- 66

Query: 123 VVDVVRLLLSAGADPDCVDANG 144
              +V  L++AGA+ +  D++G
Sbjct: 67  -YSIVDFLITAGANVNSPDSHG 87

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 92  ILLHSSADVNVS--CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
            +L  +     +     +    L  AA  G    ++VV+  +    DP   +  G
Sbjct: 3   SVLRKAGSPRKARRARLNPLVLLLDAALTGE---LEVVQQAVKEMNDPSQPNEEG 54

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 11/98 (11%), Positives = 18/98 (18%), Gaps = 23/98 (23%)

Query: 64  NGSKQMV---------------SEHRTPLMVAATY--GSVDVLKLILLHSSADVNVSCGS 106
                +                S+  T       Y  G  D     L      + +   S
Sbjct: 97  CNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATY-LADVEQSMGL-MNS 154

Query: 107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
               AL   ++       D +             D   
Sbjct: 155 GAVYALWDYSAEF----GDELSFREGESVTVLRRDGPE 188

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 12/74 (16%), Positives = 15/74 (20%), Gaps = 5/74 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNV-SCGSDRTTALHCAASGGSANVVDVVRLLLS 132
              L   +     ++           V V        T    AA  G    V      L 
Sbjct: 157 VYALWDYSAEFGDELSFRE----GESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLF 212

Query: 133 AGADPDCVDANGHH 146
               P       HH
Sbjct: 213 PRVKPQRSKVKHHH 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 73.6 bits (182), Expect = 7e-15
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           + PL  AA+ GS+ +++L+     + VN        T L  A + G     D   LL+  
Sbjct: 141 QIPLHRAASVGSLKLIELLCGLGKSAVN-WQDKQGWTPLFHALAEGH---GDAAVLLVEK 196

Query: 134 -GADPDCVDANGHHPIDV 150
            GA+ D VD  G    DV
Sbjct: 197 YGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 73.3 bits (181), Expect = 8e-15
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSS-ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLS 132
            TP  +A + G+++V+K +       D+N    +   T LH A         +V + L+ 
Sbjct: 73  WTPFHIACSVGNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKW---FEVSQFLIE 128

Query: 133 AGADPDCVDANG 144
            GA     D   
Sbjct: 129 NGASVRIKDKFN 140

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.2 bits (168), Expect = 5e-13
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 7/74 (9%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
             PL  A        ++ +L    + +      D    LH + S  +    ++   LLS 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLL-QKDQDGRIPLHWSVSFQA---HEITSFLLSK 58

Query: 134 GADP---DCVDANG 144
             +    D  D +G
Sbjct: 59  MENVNLDDYPDDSG 72

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 7/59 (11%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLS 132
            TPL  A   G  D   L++    A+ ++   +    A   A +        V +  L+
Sbjct: 175 WTPLFHALAEGHGDAAVLLVEKYGAEYDLV-DNKGAKAEDVALNE------QVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 2/38 (5%)

Query: 110 TALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHP 147
             LH A          V  LL S  +     D +G  P
Sbjct: 4   YPLHQACMEN--EFFKVQELLHSKPSLLLQKDQDGRIP 39

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 70.9 bits (175), Expect = 2e-14
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
             L+ AA  G  D +++++ +  ADVN +  +   T LH AA  G    +++V +LL  G
Sbjct: 16  KKLLEAARAGRDDEVRILMAN-GADVN-AEDASGWTPLHLAAFNGH---LEIVEVLLKNG 70

Query: 135 ADPDCVDANG 144
           AD + VD  G
Sbjct: 71  ADVNAVDHAG 80

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 70.5 bits (174), Expect = 2e-14
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL +AA +G +++++++L +  ADVN +   +  T LH AA  G    +++V +LL  
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKN-GADVNAN-DMEGHTPLHLAAMFGH---LEIVEVLLKN 135

Query: 134 GADPDCVDANG 144
           GAD +  D  G
Sbjct: 136 GADVNAQDKFG 146

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 70.1 bits (173), Expect = 3e-14
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL +AA  G +++++++L +  ADVN +      T L  AA  G    +++V +LL  
Sbjct: 48  WTPLHLAAFNGHLEIVEVLLKN-GADVN-AVDHAGMTPLRLAALFGH---LEIVEVLLKN 102

Query: 134 GADPDCVDANG 144
           GAD +  D  G
Sbjct: 103 GADVNANDMEG 113

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 58.1 bits (142), Expect = 4e-10
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLS 132
            TPL +AA +G +++++++L +  ADVN        TA   +   G+    D+  +L  
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKN-GADVNAQ-DKFGKTAFDISIDNGN---EDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.4 bits (135), Expect = 4e-09
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 98  ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHP 147
           +  +   GSD    L  AA  G     D VR+L++ GAD +  DA+G  P
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGR---DDEVRILMANGADVNAEDASGWTP 50

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 70.5 bits (174), Expect = 2e-14
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
             PL  A +YG  +V +L++ H  A VNV+    + T LH AA+ G     ++ +LLL  
Sbjct: 76  LVPLHNACSYGHYEVAELLVKHG-AVVNVA-DLWKFTPLHEAAAKGK---YEICKLLLQH 130

Query: 134 GADPDCVDANGHHPIDV 150
           GADP   + +G+ P+D+
Sbjct: 131 GADPTKKNRDGNTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 70.5 bits (174), Expect = 2e-14
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
              L+ AA  G V+ +K +    S +     G  ++T LH AA       V VV  LL  
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNR---VSVVEYLLQH 64

Query: 134 GADPDCVDANGHHP 147
           GAD    D  G  P
Sbjct: 65  GADVHAKDKGGLVP 78

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 69.3 bits (171), Expect = 5e-14
 Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 20/96 (20%)

Query: 64  NGSKQMV----SEH-----------RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDR 108
            G  + V    +              TPL  AA Y  V V++ +L H  ADV+       
Sbjct: 18  AGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAK-DKGG 75

Query: 109 TTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
              LH A S G     +V  LL+  GA  +  D   
Sbjct: 76  LVPLHNACSYGH---YEVAELLVKHGAVVNVADLWK 108

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.9 bits (144), Expect = 2e-10
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL  AA  G  ++ KL+L H  AD       D  T L     G      D+  LL   
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQH-GADPTKK-NRDGNTPLDLVKDGD----TDIQDLLRGD 162

Query: 134 GA 135
            A
Sbjct: 163 AA 164

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPL  A +  +  V ++++ + + D++ +   D TT L  AA         ++  L+++
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLD-ARMHDGTTPLILAARLAV---EGMLEDLINS 114

Query: 134 GADPDCVDANG 144
            AD + VD  G
Sbjct: 115 HADVNAVDDLG 125

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 70.5 bits (174), Expect = 8e-14
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 19/95 (20%)

Query: 64  NGSKQMVS---EH-----------RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRT 109
              + M+                 ++ L  AA   +VD   ++L +  A+ ++   +   
Sbjct: 102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQ-NNREE 159

Query: 110 TALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
           T L  AA  GS    +  ++LL   A+ D  D   
Sbjct: 160 TPLFLAAREGS---YETAKVLLDHFANRDITDHMD 191

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 67.0 bits (165), Expect = 1e-12
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            T L +AA Y   D  K +L   SAD N+   +   T LH A S  +     V ++L+  
Sbjct: 26  ETALHLAARYSRSDAAKRLLEA-SADANIQ-DNMGRTPLHAAVSADA---QGVFQILIRN 80

Query: 134 GA-DPDCVDANGH 145
            A D D    +G 
Sbjct: 81  RATDLDARMHDGT 93

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 64.7 bits (159), Expect = 7e-12
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 19/87 (21%)

Query: 64  NGSKQMVS---EH-----------RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRT 109
             +        ++            TPL +AA  GS +  K++L H  A+ +++      
Sbjct: 135 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDIT-DHMDR 192

Query: 110 TALHCAASGGSANVVDVVRLLLSAGAD 136
                A         D+VRLL      
Sbjct: 193 LPRDIAQERMH---HDIVRLLDEYNLV 216

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 55.9 bits (136), Expect = 7e-09
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 84  GSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDAN 143
            +  V+   +    A ++        TALH AA        D  + LL A AD +  D  
Sbjct: 2   DAPAVISDFIYQG-ASLHNQTDRTGETALHLAARYSR---SDAAKRLLEASADANIQDNM 57

Query: 144 G 144
           G
Sbjct: 58  G 58

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.1 bits (173), Expect = 2e-14
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            +PL +AA YG     +++L       + +      T LH AAS G     ++V +LL  
Sbjct: 35  TSPLHLAAQYGHFSTTEVLLRA-GVSRD-ARTKVDRTPLHMAASEGH---ANIVEVLLKH 89

Query: 134 GADPDCVDANG 144
           GAD +  D   
Sbjct: 90  GADVNAKDMLK 100

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.3 bits (171), Expect = 5e-14
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPL +AA+ G  ++++++L H  ADVN      + TALH A         +VV LL+  
Sbjct: 68  RTPLHMAASEGHANIVEVLLKH-GADVNAK-DMLKMTALHWATEHNH---QEVVELLIKY 122

Query: 134 GADPDCVDANG 144
           GAD        
Sbjct: 123 GADVHTQSKFC 133

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 67.0 bits (165), Expect = 2e-13
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
             L+ AA  G  D +++++ +  A          T+ LH AA  G         +LL AG
Sbjct: 4   KKLLEAARAGQDDEVRILMAN-GAPFTT--DWLGTSPLHLAAQYGH---FSTTEVLLRAG 57

Query: 135 ADPDCVDANG 144
              D      
Sbjct: 58  VSRDARTKVD 67

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
            T L  A  +   +V++L++ +  ADV+        TA   +   G+    D+  +L
Sbjct: 101 MTALHWATEHNHQEVVELLIKYG-ADVHTQ-SKFCKTAFDISIDNGN---EDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.4 bits (96), Expect = 4e-04
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 107 DRTTALHCAASGGSANVVDVVRLLLSAGAD 136
           D    L  AA  G     D VR+L++ GA 
Sbjct: 1   DLGKKLLEAARAGQ---DDEVRILMANGAP 27

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.5 bits (179), Expect = 3e-14
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPL  A +  +  V ++++ + + D++ +   D TT L  AA         ++  L+++
Sbjct: 91  RTPLHAAVSADAQGVFQILIRNRATDLD-ARMHDGTTPLILAARLAV---EGMLEDLINS 146

Query: 134 GADPDCVDANGH 145
            AD + VD  G 
Sbjct: 147 HADVNAVDDLGK 158

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 71.3 bits (176), Expect = 6e-14
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           ++ L  AA   +VD   ++L +  A+ ++    +  T L  AA  GS    +  ++LL  
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREE-TPLFLAAREGS---YETAKVLLDH 212

Query: 134 GADPDCVDANGHHPIDV 150
            A+ D  D     P D+
Sbjct: 213 FANRDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.0 bits (157), Expect = 2e-11
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 17/84 (20%)

Query: 74  RTPLMVAATYG-------------SVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGS 120
            TPLM+A+  G             +  V+   +    A ++        TALH AA    
Sbjct: 11  FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG-ASLHNQTDRTGETALHLAARYSR 69

Query: 121 ANVVDVVRLLLSAGADPDCVDANG 144
               D  + LL A AD +  D  G
Sbjct: 70  ---SDAAKRLLEASADANIQDNMG 90

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 62.5 bits (153), Expect = 6e-11
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL +AA  GS +  K++L H  A+ ++            A         D+VRLL   
Sbjct: 191 ETPLFLAAREGSYETAKVLLDH-FANRDI-TDHMDRLPRDIAQERMH---HDIVRLLDLE 245

Query: 134 GADPDCVDANGHH 146
                    + HH
Sbjct: 246 HHHH-----HHHH 253

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 71.5 bits (176), Expect = 5e-14
 Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 25/147 (17%)

Query: 22  ETEDSFTSMLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV------ 70
                   +L+ +   + +  +R++    DPS  ++ G   L      G  ++V      
Sbjct: 33  FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92

Query: 71  --------SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTA--LHCAASGGS 120
                   S+  TPL  AA+  +V V K  L+ S A V     SD  TA         G 
Sbjct: 93  GVNVNAADSDGWTPLHCAASCNNVQVCKF-LVESGAAVFAMTYSDMQTAADKCEEMEEGY 151

Query: 121 ANVVDVVRLLLSAGADPDCVDANGHHP 147
                  + L         ++    + 
Sbjct: 152 ---TQCSQFLYGVQEKMGIMNKGVIYA 175

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 68.4 bits (168), Expect = 4e-13
 Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 6/71 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           +  L               + H    V  +        L  ++  G     D+V+ ++  
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHG-MRVKFN--PLPLALLLDSSLEGE---FDLVQRIIYE 59

Query: 134 GADPDCVDANG 144
             DP   +  G
Sbjct: 60  VDDPSLPNDEG 70

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.8 bits (167), Expect = 8e-14
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL +A  +G +++++++L +  ADVN    +   T LH AA  G    +++  +LL  
Sbjct: 48  LTPLYLATAHGHLEIVEVLLKN-GADVNAV-DAIGFTPLHLAAFIGH---LEIAEVLLKH 102

Query: 134 GADPDCVDANG 144
           GAD +  D  G
Sbjct: 103 GADVNAQDKFG 113

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 65.9 bits (162), Expect = 4e-13
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
             L+ AA  G  D +++++ +  ADVN        T L+ A + G    +++V +LL  G
Sbjct: 16  KKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGH---LEIVEVLLKNG 70

Query: 135 ADPDCVDANGHHP 147
           AD + VDA G  P
Sbjct: 71  ADVNAVDAIGFTP 83

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 56.2 bits (137), Expect = 1e-09
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLS 132
            TPL +AA  G +++ +++L H  ADVN        TA   +   G+    D+  +L  
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKH-GADVNAQ-DKFGKTAFDISIGNGN---EDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 50.1 bits (121), Expect = 1e-07
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 98  ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
           +  +   GSD    L  AA  G     D VR+L++ GAD +  D  G
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGQ---DDEVRILMANGADVNAKDEYG 47

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 34/137 (24%)

Query: 21  AETEDSFTSMLELASNN------DVEGFKRMLER--DPSSVDEVGLWYGRVNGSKQMVSE 72
           + T++  T    L            E  K  LE+  D +++ +                 
Sbjct: 70  SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPY--------------- 114

Query: 73  HRTPLMVAATYGSVD------VLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDV 126
            +  +        VD      + KLI   S   + +      T AL              
Sbjct: 115 -KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLT-ALEFVKRCQK---PIA 169

Query: 127 VRLLLSAGADPDCVDAN 143
           ++++       +  + +
Sbjct: 170 LKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 16/130 (12%)

Query: 21  AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVA 80
           +     + ++   A     E F  + E+      E      + N            L   
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKG----YEDKESVLKSN-------ILYDVLRNN 49

Query: 81  ATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVV---DVVRLLLSAGADP 137
                  +    L++  AD+      + TT       GG  ++    ++ ++ L  GAD 
Sbjct: 50  NDEARYKISMF-LINKGADIKSR-TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI 107

Query: 138 DCVDANGHHP 147
             +       
Sbjct: 108 TALYKPYKIV 117

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSS----ADVNVSCGSDRTTALHCAASGGSANVVDVVRL 129
            TPLM A  + + + L L++          ++        + LH A         DV   
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLD-YANKQGNSHLHWAILINW---EDVAMR 229

Query: 130 LLSAGADPDCVDANG 144
            +  G D +  D   
Sbjct: 230 FVEMGIDVNMEDNEH 244

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 70.7 bits (174), Expect = 3e-13
 Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 14/84 (16%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
              + VAA  G  D ++  L+ +     +       TALH A   G    VD  + L S 
Sbjct: 21  MEKIHVAARKGQTDEVRR-LIETGVSPTI-QNRFGCTALHLACKFGC---VDTAKYLASV 75

Query: 134 GADPDCVD---------ANGHHPI 148
           G                      +
Sbjct: 76  GEVHSLWHGQKPIHLAVMANKTDL 99

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 70.7 bits (174), Expect = 4e-13
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 5/77 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            + L  A      DV     +    DVN    ++ T  L+ +        V + + LL  
Sbjct: 212 NSHLHWAILINWEDVAMR-FVEMGIDVN-MEDNEHTVPLYLSVRAAM---VLLTKELLQK 266

Query: 134 GADPDCVDANGHHPIDV 150
                      H+   V
Sbjct: 267 TDVFLIQACPYHNGTTV 283

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.4 bits (168), Expect = 2e-12
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 17/89 (19%)

Query: 64  NGSKQMVS---EH-----RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCA 115
                +V    E      + P  +       +V +          +V       TALH  
Sbjct: 94  ANKTDLVVALVEGAKERGQMPESLLNECDEREVNE-------IGSHVK-HCKGQTALHWC 145

Query: 116 ASGGSANVVDVVRLLLSAGADPDCVDANG 144
              G    ++++++L+  GA P   D   
Sbjct: 146 VGLGP-EYLEMIKILVQLGASPTAKDKAD 173

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.0 bits (167), Expect = 3e-12
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            T L +A  +G VD  K +        ++         +H A         D+V  L+  
Sbjct: 54  CTALHLACKFGCVDTAKYLASV-GEVHSL---WHGQKPIHLAVMANK---TDLVVALVEG 106

Query: 134 GAD 136
             +
Sbjct: 107 AKE 109

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 5/77 (6%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
              +  AA     +VL+L+      +V  S  +             +     V R+ L+ 
Sbjct: 291 LDFVPAAADPSKQEVLQLLQEKL-DEVVRS-LNTGAGGAVKRKKKAA---PAVKRMKLAP 345

Query: 134 GADPDCVDANGHHPIDV 150
            A       +      V
Sbjct: 346 SAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 64.5 bits (158), Expect = 3e-11
 Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 16/84 (19%)

Query: 74  RTPLMVAATYGSVDVLKLIL------------LHSSADVNVSCGSDRTTALHCAASGGSA 121
             PL ++     V + K +L             H+   V           +  AA     
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL-PDRVVWLDFVPAAADPSK- 302

Query: 122 NVVDVVRLLLSAGADPDCVDANGH 145
              +V++LL     +       G 
Sbjct: 303 --QEVLQLLQEKLDEVVRSLNTGA 324

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.8 bits (125), Expect = 4e-07
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 4/53 (7%)

Query: 92  ILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
           +      +       +    +H AA  G     D VR L+  G  P   +  G
Sbjct: 5   MTDFPKLNRI-KSDDENMEKIHVAARKGQ---TDEVRRLIETGVSPTIQNRFG 53

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 2/42 (4%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCA 115
               +      +  V ++  L  SA V  +    R  +   +
Sbjct: 324 AGGAVKRKKKAAPAVKRM-KLAPSAPVR-TRSRSRARSSAVS 363

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.0 bits (165), Expect = 3e-13
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
              L  AA  G ++ L  +L + + +VN +      TAL     G      ++ R LL  
Sbjct: 6   GNELASAAARGDLEQLTSLLQN-NVNVN-AQNGFGRTALQVMKLGN----PEIARRLLLR 59

Query: 134 GADPDCVDANGH 145
           GA+PD  D  G 
Sbjct: 60  GANPDLKDRTGF 71

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 66.3 bits (163), Expect = 6e-13
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RT L V    G+ ++ + +LL   A+ ++         +H AA  G    +D ++ LL  
Sbjct: 39  RTALQVMK-LGNPEIARRLLLRG-ANPDLK-DRTGFAVIHDAARAGF---LDTLQTLLEF 92

Query: 134 GADPDCVDANG 144
            AD +  D  G
Sbjct: 93  QADVNIEDNEG 103

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.9 bits (162), Expect = 7e-13
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 33/144 (22%)

Query: 11  NTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNG 65
           N ++     TA         L++    + E  +R+L R  +P   D  G   +      G
Sbjct: 32  NAQN-GFGRTA---------LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81

Query: 66  SKQMVS---EH-----------RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTA 111
               +    E              PL +AA  G + V++ ++ H++++V         TA
Sbjct: 82  FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR-NHKGDTA 140

Query: 112 LHCAASGGSANVVDVVRLLLSAGA 135
              A   G     +VV L+ + GA
Sbjct: 141 CDLARLYGR---NEVVSLMQANGA 161

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 67.4 bits (166), Expect = 4e-13
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RTPLMVA   G  + +  ++ +    +      + +TAL  A        + +   LLS 
Sbjct: 36  RTPLMVACMLGMENAIDKLVEN-FDKLE-DKDIEGSTALIWAVKNNR---LGIAEKLLSK 90

Query: 134 GADPDCVDANG 144
           G++ +  D +G
Sbjct: 91  GSNVNTKDFSG 101

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 67.0 bits (165), Expect = 6e-13
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           +TPLM +  +G  ++   +L H  A+VN     +  T L  A+  G     ++V+ LL  
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEH-GANVNDR-NLEGETPLIVASKYGR---SEIVKKLLEL 156

Query: 134 GADPDCVDANG 144
           GAD    D  G
Sbjct: 157 GADISARDLTG 167

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.4 bits (140), Expect = 1e-09
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
            TPL+VA+ YG  +++K +L    AD++        TA   A   G     +V+++    
Sbjct: 135 ETPLIVASKYGRSEIVKKLLEL-GADISAR-DLTGLTAEASARIFGR---QEVIKIFTEV 189

Query: 134 GA 135
             
Sbjct: 190 RR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 11/71 (15%), Positives = 17/71 (23%), Gaps = 11/71 (15%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
                +         L    L +  D      S   T L  A   G     + +  L+  
Sbjct: 9   EIVEKIKDEKSINQNLDF--LRNYRD------SYNRTPLMVACMLGM---ENAIDKLVEN 57

Query: 134 GADPDCVDANG 144
               +  D  G
Sbjct: 58  FDKLEDKDIEG 68

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 68.4 bits (167), Expect = 5e-13
 Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 19/158 (12%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
           RT L  A + G  ++++ +L      VN        + LH AA   SA   ++V+ LL  
Sbjct: 41  RTALHWACSAGHTEIVEFLLQL-GVPVN-DKDDAGWSPLHIAA---SAGXDEIVKALLVK 95

Query: 134 GADPDCVDANGHHPIDVIVLPPKLDSMRAILE------EVFGSKNSSVVVASGAEHNLTV 187
           GA  + V+ NG  P+       + +    +LE             +++  A+   +   V
Sbjct: 96  GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155

Query: 188 --------SIGSSNSDYSSPLLTASASGSPPSPSRLVS 217
                   S    +++ ++PL  A           LV+
Sbjct: 156 HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 64.5 bits (157), Expect = 1e-11
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
               +A +    ++ + IL    +        D  TALH A S G     ++V  LL  G
Sbjct: 9   MICNLAYSGKLDELKERILADK-SLAT-RTDQDSRTALHWACSAGH---TEIVEFLLQLG 63

Query: 135 ADPDCVDANG 144
              +  D  G
Sbjct: 64  VPVNDKDDAG 73

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 26/140 (18%)

Query: 18  NSTAETEDSFTSMLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV-- 70
           +  A  ++  T +   AS N  E    +LE   +P + D      +      G+ +MV  
Sbjct: 98  HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 71  ------------SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASG 118
                       +E  TPL +A     V+  K ++    A + +    +  T L  A  G
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIE-NKEEKTPLQVAKGG 215

Query: 119 GSANVVDVVRLLLSAGADPD 138
                + ++   L+ G +  
Sbjct: 216 -----LGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
                 + A SG      ++   +L+  +     D + 
Sbjct: 6   SNIMICNLAYSGKLD---ELKERILADKSLATRTDQDS 40

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.0 bits (167), Expect = 6e-13
 Identities = 28/147 (19%), Positives = 55/147 (37%), Gaps = 25/147 (17%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRT------------TALHCAASGGSA 121
           +T L +A    +V++++ +L    A V+                      L  AA  GS 
Sbjct: 76  QTALHIAVINQNVNLVRALLARG-ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS- 133

Query: 122 NVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGA 181
              ++VRLL+  GAD    D+ G+  + +++L P       +           ++++   
Sbjct: 134 --EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN---------LLLSYDG 182

Query: 182 EHNLTVSIGSSNSDYSSPLLTASASGS 208
             +L       N+   +P   A   G+
Sbjct: 183 GDHLKSLELVPNNQGLTPFKLAGVEGN 209

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 65.7 bits (161), Expect = 4e-12
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
           +PL++AA    V  L  +L     +V+   G+   TALH AA   +   ++   +L+ A 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDN---LEAAMVLMEAA 60

Query: 135 ADPDCVDAN 143
            +       
Sbjct: 61  PELVFEPMT 69

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRT----TALHCAASGGSANVVDVVRL 129
            T L +AA Y +++   +++   + ++     +       TALH A    +   V++VR 
Sbjct: 38  ETALHIAALYDNLEAAMVLMEA-APELVFEPMTSELYEGQTALHIAVINQN---VNLVRA 93

Query: 130 LLSAGADPDCVDANGHHPIDV 150
           LL+ GA               
Sbjct: 94  LLARGASVSARATGSVFHYRP 114

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 2/35 (5%)

Query: 110 TALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
           + L  AA       +   +LL   G +     A G
Sbjct: 5   SPLLLAAKENDVQAL--SKLLKFEGCEVHQRGAMG 37

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 19/90 (21%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVS-CGSDRTTALHCAASGGSANVVDVVRLLLS 132
                +AA  G + VL   L   +    ++   ++   A   AA  G    + V+  L  
Sbjct: 129 YQAFRLAAENGHLHVLNR-LCELAPTEIMAMIQAENYHAFRLAAENGH---LHVLNRLCE 184

Query: 133 AGADPDCVDA--------------NGHHPI 148
                                    GHH +
Sbjct: 185 LAPTEATAMIQAENYYAFRWAAVGRGHHNV 214

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 62.7 bits (152), Expect = 2e-10
 Identities = 28/141 (19%), Positives = 44/141 (31%), Gaps = 21/141 (14%)

Query: 24  EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLW----YGRVN-GSKQMVSEHR---- 74
                + L L + +  E     L     ++++V       Y   N  +KQ+ S+      
Sbjct: 32  HFISANELSLMTLSYKEAIHIFLPGT-KNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGI 90

Query: 75  ---TPLMVAATYGSVDVLKLI--LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRL 129
                  VAA  G    L  +  LL S   V V   ++   A   AA  G    + V+  
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKV-IQAENYQAFRLAAENGH---LHVLNR 146

Query: 130 LLSAGADPDCVD--ANGHHPI 148
           L             A  +H  
Sbjct: 147 LCELAPTEIMAMIQAENYHAF 167

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASG-GSANVVDVVRLLLS 132
                +AA  G + VL  +   +  +      ++   A   AA G G     +V+  LL 
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH---HNVINFLLD 220

Query: 133 AGADPDCVDANGH 145
                   + +  
Sbjct: 221 CPVMLAYAEIHEF 233

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.0 bits (132), Expect = 4e-08
 Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 16/101 (15%)

Query: 58  LWYGRVNGSKQMVSEH-----RTPLMVAATYGSVDVLKLILLHSS-------ADVNVSCG 105
                 +G   +V++         L          +L  I    S       A      G
Sbjct: 258 FKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG 317

Query: 106 SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHH 146
                 L  A   G+        LLLS  +      AN ++
Sbjct: 318 DANE-LLRLALRLGN---QGACALLLSIPSVLALTKANNYY 354

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 20/91 (21%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSS--ADVNV---------------SCGSDRTTALHCAA 116
             PL +AA     DV+  +L +    A +                 +  S   +AL    
Sbjct: 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 196

Query: 117 SGGSANVVDVVRLLLSAGADPDCVDANGHHP 147
             G    + +   L       +  +  G  P
Sbjct: 197 YDGL---LQMGARLCPTVQLEEISNHQGLTP 224

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 5/76 (6%)

Query: 71  SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
           S   + L++    G + +    L  +     +S      T L  AA  G    +++ R +
Sbjct: 186 SPENSALVIHMYDGLLQMGAR-LCPTVQLEEISN-HQGLTPLKLAAKEGK---IEIFRHI 240

Query: 131 LSAGADPDCVDANGHH 146
           L           + HH
Sbjct: 241 LQREFSGAAAHHHHHH 256

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 30/142 (21%), Positives = 40/142 (28%), Gaps = 35/142 (24%)

Query: 28  TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEH------RTPLMVAA 81
             +  + S    E    +LE            Y R N      S +      +T LM A 
Sbjct: 4   DRLFSVVSRGVPEELTGLLE------------YLRWNSKYLTDSAYTEGSTGKTCLMKAV 51

Query: 82  ---TYGSVDVLKLILLHSSAD-------VNVSCGS---DRTTALHCAASGGSANVVDVVR 128
                G    +   LL    D       VN  C        +ALH A    S   +  V+
Sbjct: 52  LNLQDGVNACIMP-LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS---LQCVK 107

Query: 129 LLLSAGADPDCVDANGHHPIDV 150
           LL+  GAD              
Sbjct: 108 LLVENGADVHLRACGRFFQKHQ 129

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 16/92 (17%), Positives = 22/92 (23%), Gaps = 19/92 (20%)

Query: 74  RTPLMVAATYGSVDVLKLILLH-------SSADVNVSCGSDRTTALHCAASGGSANVVDV 126
           R  L    + G  + L  +L +        +       GS   T L  A       V   
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE-GSTGKTCLMKAVLNLQDGVNAC 61

Query: 127 VRLLLSAGADPD-----------CVDANGHHP 147
           +  LL    D                  GH  
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSA 93

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 7/67 (10%)

Query: 297 YSCVPCPDFRK-GACRRGDMCEYAHGVFE--CWLHPAQYRTRLCKD---GTSCDRRV-CF 349
           Y    C  + + G CR G  C++AHG+ E        +Y+T LC        C     C 
Sbjct: 10  YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCH 69

Query: 350 FAHTAEE 356
           F H   E
Sbjct: 70  FIHNPTE 76

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 20/87 (22%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRT-------------TALHCAASGGS 120
           +T L +A        ++L L+   ADV+                       L  AA    
Sbjct: 94  QTALHIAIERRCKHYVEL-LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152

Query: 121 ANVVDVVRLLLSAG---ADPDCVDANG 144
                +V  L   G   AD    D+ G
Sbjct: 153 ---PHIVHYLTENGHKQADLRRQDSRG 176

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.5 bits (139), Expect = 3e-09
 Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 33/138 (23%)

Query: 28  TSMLELASNNDVEGFKRMLE------RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAA 81
             + ++ S    +G + +L       +  +  +      G+            T L  A 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGK------------TCLPKAL 54

Query: 82  ---TYGSVDVLKLILLH------SSADVNVSCGSDRT---TALHCAASGGSANVVDVVRL 129
              + G  D + ++L            +N           TALH A           V L
Sbjct: 55  LNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC---KHYVEL 111

Query: 130 LLSAGADPDCVDANGHHP 147
           L+  GAD           
Sbjct: 112 LVEKGADVHAQARGRFFQ 129

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 6/81 (7%)

Query: 74  RTPLMVAATYGSVDVLKLI---LLHSSADVN---VSCGSDRTTALHCAASGGSANVVDVV 127
           R  L    + GS D L+ +   LL     +        S   T L  A    SA   D +
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 128 RLLLSAGADPDCVDANGHHPI 148
            +LL        +    + P 
Sbjct: 66  PILLDIAEKTGNMREFINSPF 86

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 74  RTPLMVAATYGSVDVLKLILLH--SSADVNVSCGSDRTTALHCAASGG------SANVVD 125
             PL +AA      ++  +  +    AD+     S   T LH   +        +  V  
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQ-DSRGNTVLHALVAIADNTRENTKFVTK 199

Query: 126 VVRLLLSAGADPD 138
           +  LLL   A   
Sbjct: 200 MYDLLLIKCAKLF 212

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 19/91 (20%)

Query: 71  SEHRTPLMVAATYGS---------VDVLKLILLHSSADVNVSCGSDRT------TALHCA 115
           S   T L                   +  L+L+   A +      +        + L  A
Sbjct: 174 SRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTNLEALLNNDGLSPLMMA 232

Query: 116 ASGGSANVVDVVRLLLSAGADPDCVDANGHH 146
           A  G    + + + ++           + HH
Sbjct: 233 AKTGK---IGIFQHIIRREIADAAAHHHHHH 260

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 60.2 bits (146), Expect = 5e-10
 Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 6/75 (8%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSS------ADVNVSCGSDRTTALHCAASGGSANVVDVV 127
           R  +  A    +   L+ +L           D          T L  A         D +
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 128 RLLLSAGADPDCVDA 142
            LLL      D +  
Sbjct: 74  ALLLDVARKTDSLKQ 88

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.8 bits (145), Expect = 6e-10
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 25/141 (17%)

Query: 22  ETEDSF--TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMV 79
           +    +   S+ +  + ++ +  + +L     S   +       +   +     +T L+ 
Sbjct: 7   KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRL------TDSEFKDPETGKTCLLK 60

Query: 80  A---ATYGSVDVLKLILLHSSAD-------VNVSCGSDRT---TALHCAASGGSANVVDV 126
           A      G  D + L LL  +         VN S         TALH A    +   + +
Sbjct: 61  AMLNLHNGQNDTIAL-LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN---MTL 116

Query: 127 VRLLLSAGADPDCVDANGHHP 147
           V LL+  GAD           
Sbjct: 117 VTLLVENGADVQAAANGDFFK 137

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 22/156 (14%)

Query: 7   KSESNTEDMNNNSTAETEDSFTSMLELAS-NNDVEGFKRMLER--DPSSVDEVGLWYGRV 63
           K++S  + +N + T       T+ L +A    ++     ++E   D  +    G ++ + 
Sbjct: 82  KTDSLKQFVNASYTDSYYKGQTA-LHIAIERRNMTLVTLLVENGADVQAAAN-GDFFKKT 139

Query: 64  NGSKQMVSEHRTPLMVAATYGSVDVLKLILLH--SSADVNVSCGSDRTTALHCAASGGSA 121
            G          PL +AA    + ++K +L +    AD++    S   T LH        
Sbjct: 140 KGRPGFY-FGELPLSLAACTNQLAIVKFLLQNSWQPADISAR-DSVGNTVLHALVEVADN 197

Query: 122 NVV-------------DVVRLLLSAGADPDCVDANG 144
            V               +   L       +  +  G
Sbjct: 198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG 233

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 17/77 (22%)

Query: 74  RTPLMVAATYG--SVDVLKLI------LLHSSADVNVSCGS------DRTTALHCAASGG 119
            T L         +VD  K +      +L   A ++ +            T L  AAS G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244

Query: 120 SANVVDVVRLLLSAGAD 136
               + V+  +L     
Sbjct: 245 K---IGVLAYILQREIH 258

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 9/46 (19%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGG 119
            TPL +AA+ G + VL   +L                  H AA   
Sbjct: 234 LTPLALAASSGKIGVLAY-ILQREIHEP--------ECRHAAAHHH 270

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Length = 83

 Score = 54.3 bits (130), Expect = 1e-09
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 302 CPDFRKGACRRGDM-CEYAHGVFECWLHPAQYRTRLCKD--GTSCDRRVCFFAHTAEELR 358
           C +F++G C R D  C++AH    C +     R   C D     C R  C + H    L+
Sbjct: 12  CREFQRGTCSRPDTECKFAHPSKSCQVENG--RVIACFDSLKGRCSRENCKYLHPPPHLK 69

Query: 359 PLYVSNGSV 367
                NG  
Sbjct: 70  TQLEINGRN 78

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 73  HRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLS 132
                   +    +  +     ++  ++N+       T LH   S  +   +++V+ L+ 
Sbjct: 96  SNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN---LELVKHLVK 152

Query: 133 AGADPDCVDANGHHP 147
            G++    D  G   
Sbjct: 153 HGSNRLYGDNMGESC 167

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 17/140 (12%), Positives = 39/140 (27%), Gaps = 16/140 (11%)

Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGG-SANVVDVVRLL 130
              TPL    +  +++++K  L+   ++          + L  A     + +      LL
Sbjct: 130 HGNTPLHWLTSIANLELVKH-LVKHGSNRLYGDNMGE-SCLVKAVKSVNNYDSGTFEALL 187

Query: 131 LSAGADPDCVDANG----HHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLT 186
                     D+      HH I    +     + +  L+         +++    +    
Sbjct: 188 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD---------ILMGWIVKKQNR 238

Query: 187 VSIGSSNSDYSSPLLTASAS 206
                +N   S P       
Sbjct: 239 PIQSGTNEKESKPNDKNGER 258

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.9 bits (129), Expect = 7e-08
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG-SDRTTALHCAASGGSANVVDVVRLL 130
           E  +            +L+ + L       ++   S+  T L+ AA  G+   + +V  L
Sbjct: 246 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN---ISIVDAL 302

Query: 131 LSAGADPDCVDANGHHPIDVIV 152
           L  GADP   + +G  P+D   
Sbjct: 303 LDYGADPFIANKSGLRPVDFGA 324

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89

 Score = 52.9 bits (126), Expect = 5e-09
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 302 CPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKD--GTSCDRRVCFFAHTAEELR 358
           C  F++G C R D  C++AH    C +     R   C D     C R  C + H    L+
Sbjct: 20  CRQFQRGTCSRSDEECKFAHPPKSCQVENG--RVIACFDSLKGRCSRENCKYLHPPTHLK 77

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 52.8 bits (126), Expect = 7e-09
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 287 ARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRR 346
                  +       C  +  G C R + C Y HG F C L+   + T  C +G  C   
Sbjct: 1   GSSGSSGELPKKRELCKFYITGFCARAENCPYMHGDFPCKLY---HTTGNCINGDDCM-- 55

Query: 347 VCFFAH--TAEELRPLY 361
              F+H    EE R L 
Sbjct: 56  ---FSHDPLTEETRELL 69

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 71  SEHRTPLMVAATYGSVDVLKLI--LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVR 128
               T L +A        L ++  L+ +S +++       +TALH      +A   + ++
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDNA---ECLK 222

Query: 129 LLLSAGADPDCVDANGHHPIDV 150
           LLL   A  +  + +G  P+D+
Sbjct: 223 LLLRGKASIEIANESGETPLDI 244

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 71  SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
            +  T L       + + LKL LL   A + ++  S  T  L  A      +  +++   
Sbjct: 203 GKGSTALHYCCLTDNAECLKL-LLRGKASIEIANESGET-PLDIAKRLKHEHCEELLTQA 260

Query: 131 LSAGADPDCVDAN 143
           LS G     V   
Sbjct: 261 LS-GRFNSHVHVE 272

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 14/80 (17%)

Query: 282 HPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKD-- 339
           H   +       K     V C  + +G C++GD CE+ H            +   C    
Sbjct: 3   HHHHHHSHMSGEK----TVVCKHWLRGLCKKGDQCEFLH-------EYDMTKMSECYFYS 51

Query: 340 -GTSCDRRVCFFAHTAEELR 358
               C  + C F H   E +
Sbjct: 52  KFGECSNKECPFLHIDPESK 71

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 300 VPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKD---GTSCDRRVCFFAHTAEE 356
           V C  + +G C++GD CE+ H            +   C        C  + C F H   E
Sbjct: 11  VVCKHWLRGLCKKGDQCEFLH-------EYDMTKMPECYFYSKFGECSNKECPFLHIDPE 63

Query: 357 LR 358
            +
Sbjct: 64  SK 65

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 71  SEHRTPLMVAATYGSVDVLKLI--LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVR 128
           +     L +A    +   L L+  ++ +   ++    +D  TALH AA        D ++
Sbjct: 188 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTALHYAALYNQP---DCLK 243

Query: 129 LLLSAGADPDCVDANGHHPIDV 150
           LLL   A    V+  G   +D+
Sbjct: 244 LLLKGRALVGTVNEAGETALDI 265

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
           ++ TPL+ A    S+   +  LL + A+VN +  S     LH A   G      +  L L
Sbjct: 234 DNATPLIQATAANSLLACEF-LLQNGANVNQA-DSAGRGPLHHATILGHT---GLACLFL 288

Query: 132 SAGADPDCVDANGHHPIDVIV 152
             GAD    D+ G  P+ + +
Sbjct: 289 KRGADLGARDSEGRDPLTIAM 309

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 51/375 (13%), Positives = 97/375 (25%), Gaps = 133/375 (35%)

Query: 446 LSARDILP---DDFSSLSDFDSQ---------------QHILND----------LTCFSQ 477
              +DIL    D F  + +FD +                HI+                  
Sbjct: 16  YQYKDILSVFEDAF--VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 478 ARNNSVS-------------LSRSCRPKTLTPSNLDELFSAEISSSPRFSDQAVFSPTHK 524
            +   V              L    + +   PS +  ++  +      ++D  VF+  + 
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAKYNV 131

Query: 525 SSV--LNQFQQPHSMLSPIKTNVF------SPKNVEHPLLQASFRVGSPGRMSPRSVEPI 576
           S +    + +Q    L P K NV       S K     +                 +  +
Sbjct: 132 SRLQPYLKLRQALLELRPAK-NVLIDGVLGSGKTW---VALDVCLSYKVQCKMDFKIFWL 187

Query: 577 SPMGPRLAAFAQREKQQQQLHSLSSRDPISNNPIPNIGSPRNVNSSWSK----WGSPSGK 632
           + +    +     E  Q+ L+ +       ++   NI     ++S  ++      S   +
Sbjct: 188 N-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI--KLRIHSIQAELRRLLKSKPYE 244

Query: 633 -----LD--WSIKGDELE--------LL--RRSSSCDLRNNNHE------------EPD- 662
                L    + K             LL  R     D  +                 PD 
Sbjct: 245 NCLLVLLNVQNAK--AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 663 -----LSWIHSIVKESPPEMMKEKTANPVVTTASSGEALNSNSQADSFDHSVIGA----- 712
                L ++    ++ P E+    T NP                      S+I       
Sbjct: 303 VKSLLLKYLDCRPQDLPREV---LTTNPRR-------------------LSIIAESIRDG 340

Query: 713 ---W--LEQMQLDQL 722
              W   + +  D+L
Sbjct: 341 LATWDNWKHVNCDKL 355

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Length = 80

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 17/83 (20%), Positives = 24/83 (28%), Gaps = 27/83 (32%)

Query: 277 ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRL 336
            C + H               S + C +     C R D C + H        P       
Sbjct: 22  RCKYRHA-------------RSHIMCREG--ANCTRID-CLFGH--------PIN---ED 54

Query: 337 CKDGTSCDRRVCFFAHTAEELRP 359
           C+ G +C    C F H    + P
Sbjct: 55  CRFGVNCKNIYCLFRHPPGRVLP 77

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 37.6 bits (87), Expect = 8e-04
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 302 CPDFRKGACRRGDMCEYAHGVFEC--WLHPAQYR 333
           C  +  G C  G+ C++AHG  E   W       
Sbjct: 23  CDRYMNGTCPEGNSCKFAHGNAELHEWEERRDAL 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	724
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.9
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.9
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.9
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.89
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.89
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.87
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.86
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.86
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.81
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.81
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.76
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.74
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.73
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.67
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	98.72
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.42
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	97.82
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	97.73
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	97.45
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.23
2rhk_C	72	Cleavage and polyadenylation specificity factor su	97.22
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	97.07
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	96.68
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	96.65
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	96.29
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	88.6
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	88.64
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	88.58
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	88.22
2rhk_C	72	Cleavage and polyadenylation specificity factor su	84.41
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	82.84

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=1.6e-32  Score=282.67  Aligned_cols=209  Identities=16%  Similarity=0.121  Sum_probs=178.7

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC---ccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSS---VDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH   95 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gad---In~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~   95 (724)
                      ++..|.+|.||||+||..|++++|++||+ .+.+   ++..             +..|+||||+||..|+.++|++||++
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~   67 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQ-------------NDLGQTALHLAAILGEASTVEKLYAA   67 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGGCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            46789999999999999999999999999 5666   5544             68899999999999999999999999


Q ss_pred             CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC---------------------------------------
Q 004911           96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD---------------------------------------  136 (724)
Q Consensus        96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd---------------------------------------  136 (724)
                       |++++.. +..|.||||+|+..|+   .+++++|+++|++                                       
T Consensus        68 -ga~~~~~-~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (282)
T 1oy3_D           68 -GAGVLVA-ERGGHTALHLACRVRA---HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP  142 (282)
T ss_dssp             -TCCSSCC-CTTSCCHHHHHTTTTC---HHHHHHHSSSCCSSCCCC----------------------------------
T ss_pred             -CCCCCCC-CCCCCCHHHHHHHcCC---cchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhh
Confidence             9999998 9999999999999999   9999999998865                                       


Q ss_pred             --------CCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCC-CCCChhchhHhcC
Q 004911          137 --------PDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNS-DYSSPLLTASASG  207 (724)
Q Consensus       137 --------~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~-~G~TPLh~Aa~~G  207 (724)
                              ++.+|..|.||||+|+..|+.++++.|++.    |+               +++..+. .|.||||+|+..|
T Consensus       143 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----g~---------------~~~~~~~~~g~tpL~~A~~~~  203 (282)
T 1oy3_D          143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA----GA---------------DLNKPEPTCGRTPLHLAVEAQ  203 (282)
T ss_dssp             -CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----TC---------------CTTCCCTTTCCCHHHHHHHTT
T ss_pred             hhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc----CC---------------CCCCCCCCCCcCHHHHHHHcC
Confidence                    778899999999999999999999988875    32               3445554 4999999999999


Q ss_pred             CCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          208 SPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       208 ~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      +.+++++|    ++.+.++..|.||||+|+..++.++++.|++.|++++..|..|.+++...
T Consensus       204 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a  265 (282)
T 1oy3_D          204 AASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSS  265 (282)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC----------
T ss_pred             CHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCccccccccc
Confidence            99996555    56678889999999999999999999999999999999999999998876

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=1.6e-31  Score=269.43  Aligned_cols=211  Identities=20%  Similarity=0.253  Sum_probs=193.8

Q ss_pred             CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911           17 NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS   96 (724)
Q Consensus        17 ~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~   96 (724)
                      .+++..|.+|.||||+||..|++++|++|++ .|++++..             +.+|+||||+|+..|+.++|++|+++ 
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-   66 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQ-AGANIDTC-------------SEDQRTPLMEAAENNHLEAVKYLIKA-   66 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHTT-
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHH-cCCCcCcc-------------CCCCCCHHHHHHHhCCHHHHHHHHhC-
Confidence            4678899999999999999999999999999 78888876             57899999999999999999999999 


Q ss_pred             CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC-CCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCch
Q 004911           97 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG-ADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV  175 (724)
Q Consensus        97 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G-Ad~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~  175 (724)
                      |++++.. +..|.||||+|+..|+   .+++++|++.| ++++..|..|.||||+|+..|+.++++.|++    .|+   
T Consensus        67 g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~---  135 (237)
T 3b7b_A           67 GALVDPK-DAEGSTCLHLAAKKGH---YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS----KGS---  135 (237)
T ss_dssp             TCCCCCC-CTTSCCHHHHHHHTTC---HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC---
T ss_pred             CCCCCCC-CCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH----CCC---
Confidence            9999998 9999999999999999   99999999998 8999999999999999999999998887776    342   


Q ss_pred             hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCcccccc
Q 004911          176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSI  251 (724)
Q Consensus       176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i  251 (724)
                                  +++..+..|.||||+|+..|+.+++++|+    +.+..+..|.||||+|+..++.+++..|++.|+++
T Consensus       136 ------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          136 ------------DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV  203 (237)
T ss_dssp             ------------CTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             ------------CCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence                        45667889999999999999999966665    55677888999999999999999999999999999


Q ss_pred             ccccccccccceee
Q 004911          252 YATDEFRMFSFKIR  265 (724)
Q Consensus       252 ~~~D~~g~~~fkV~  265 (724)
                      ...|..|.++++++
T Consensus       204 ~~~d~~g~t~l~~A  217 (237)
T 3b7b_A          204 TLKNKEGETPLQCA  217 (237)
T ss_dssp             TCCCTTSCCHHHHS
T ss_pred             CccCCCCCCHHHHH
Confidence            99999999999887

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=2.4e-32  Score=280.39  Aligned_cols=211  Identities=20%  Similarity=0.204  Sum_probs=159.0

Q ss_pred             CCCCCCCCCchHHHHHHHcC-------------CHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcC
Q 004911           18 NSTAETEDSFTSMLELASNN-------------DVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYG   84 (724)
Q Consensus        18 di~~~d~~g~TpLh~AA~~G-------------~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G   84 (724)
                      |++..|.+|.||||+|+..|             +.++|+.||+ .|.+++...            +..|+||||+||..|
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~------------d~~g~t~L~~A~~~g   68 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY-QGASLHNQT------------DRTGETALHLAARYS   68 (253)
T ss_dssp             ---------------------------------------------------CC------------CTTSCCHHHHHHHTT
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHH-ccCCccccc------------CCCCCcHHHHHHHcC
Confidence            57889999999999999987             9999999999 677775432            688999999999999


Q ss_pred             CHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCC-CCCCCCCCCCcHHHHHhcCCCHHHHHHH
Q 004911           85 SVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGA-DPDCVDANGHHPIDVIVLPPKLDSMRAI  163 (724)
Q Consensus        85 ~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GA-d~n~~D~~G~TPLhlAa~~G~~eivk~L  163 (724)
                      +.++|++||++ |++++.. +..|+||||+|+..|+   .+++++|+++|+ +++..|..|.||||+|+..|+.++++.|
T Consensus        69 ~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  143 (253)
T 1yyh_A           69 RSDAAKRLLEA-SADANIQ-DNMGRTPLHAAVSADA---QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL  143 (253)
T ss_dssp             CHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHH
T ss_pred             CHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHH
Confidence            99999999999 9999999 9999999999999999   999999999987 9999999999999999999999888877


Q ss_pred             HHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCC
Q 004911          164 LEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYP  239 (724)
Q Consensus       164 Le~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~  239 (724)
                      ++    .|+               +++..|..|.||||+|+..|+.+++++|    ++.+..+..|.||||+|+..++.+
T Consensus       144 l~----~g~---------------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~  204 (253)
T 1yyh_A          144 IN----SHA---------------DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE  204 (253)
T ss_dssp             HH----TTC---------------CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HH----cCC---------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHH
Confidence            76    342               4567788999999999999999996655    566688889999999999999999


Q ss_pred             CCCCCCccccccccccccccccceee
Q 004911          240 IDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       240 i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      +++.|++.|++++..|..|.++++++
T Consensus       205 ~v~~Ll~~ga~~~~~d~~g~tpl~~A  230 (253)
T 1yyh_A          205 TAKVLLDHFANRDITDHMDRLPRDIA  230 (253)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHcCCCccccccCCCCHHHHH
Confidence            99999999999999999999999886

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=2.3e-31  Score=268.07  Aligned_cols=210  Identities=18%  Similarity=0.191  Sum_probs=185.0

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHh---cCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLE---RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH   95 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe---~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~   95 (724)
                      ++..|.+|.||||+||..|++++|++|++   ..+.+++..             +..|+||||+|+..|+.++|++|+++
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~   68 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-------------NNLRQTPLHLAVITTLPSVVRLLVTA   68 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-------------cccCCCHHHHHHHcCCHHHHHHHHHc
Confidence            35678999999999999999999999997   378888876             58899999999999999999999999


Q ss_pred             CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCC----CCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCC
Q 004911           96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGA----DPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSK  171 (724)
Q Consensus        96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GA----d~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~g  171 (724)
                       |++++.. +..|.||||+|+..|+   .+++++|+++++    +++..|..|.||||+|+..|+.++++.|++.    |
T Consensus        69 -g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g  139 (241)
T 1k1a_A           69 -GASPMAL-DRHGQTAAHLACEHRS---PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER----G  139 (241)
T ss_dssp             -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT----T
T ss_pred             -CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc----C
Confidence             9999998 9999999999999999   999999999987    8999999999999999999999888877763    3


Q ss_pred             CCchhhhcccccccccccCCCC-CCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCc
Q 004911          172 NSSVVVASGAEHNLTVSIGSSN-SDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPD  246 (724)
Q Consensus       172 a~~~~~aa~~~~~l~~~in~~d-~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d  246 (724)
                      +               +++..+ ..|.||||+|+..|+.++++.|    ++.+..+..|.||||+|+..++.++++.|++
T Consensus       140 ~---------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  204 (241)
T 1k1a_A          140 A---------------DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR  204 (241)
T ss_dssp             C---------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred             C---------------CcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            2               344455 7899999999999999996655    4666788889999999999999999999999


Q ss_pred             cccccccccccccccceee
Q 004911          247 IKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       247 ~ga~i~~~D~~g~~~fkV~  265 (724)
                      .|++++..|..|.++++++
T Consensus       205 ~ga~~~~~~~~g~tpl~~A  223 (241)
T 1k1a_A          205 SGADSSLKNCHNDTPLMVA  223 (241)
T ss_dssp             TTCCTTCCCTTSCCTTTTC
T ss_pred             cCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999886

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=9.7e-31  Score=276.97  Aligned_cols=213  Identities=23%  Similarity=0.224  Sum_probs=145.7

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL   94 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe   94 (724)
                      .+.+++..|..|.||||+||..|++++|++||+ .|++++..             +..|+||||+||..|+.++|++||+
T Consensus        47 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~iv~~Ll~  112 (351)
T 3utm_A           47 LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAK-------------DKGGLVPLHNACSYGHYEVTELLLK  112 (351)
T ss_dssp             TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CCCCCcHHHHHHHCCCHHHHHHHHH
Confidence            344555566666666666666666666666666 55665554             3556666666666666666666666


Q ss_pred             cCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCC------------------------------
Q 004911           95 HSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG------------------------------  144 (724)
Q Consensus        95 ~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G------------------------------  144 (724)
                      + |++++.. +..|.||||+|+..|+   .++|++|+++|++++..+..|                              
T Consensus       113 ~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  187 (351)
T 3utm_A          113 H-GACVNAM-DLWQFTPLHEAASKNR---VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAR  187 (351)
T ss_dssp             T-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHH
Confidence            6 6666665 6666666666666666   666666666666665544333                              


Q ss_pred             ------------------------CcHHHHHhcCCC---HHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCC
Q 004911          145 ------------------------HHPIDVIVLPPK---LDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYS  197 (724)
Q Consensus       145 ------------------------~TPLhlAa~~G~---~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~  197 (724)
                                              .||||+|+..++   .++++.|    +..|               .+++..|..|.
T Consensus       188 ~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~L----l~~g---------------~~~~~~~~~g~  248 (351)
T 3utm_A          188 EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL----LRKG---------------ANVNEKNKDFM  248 (351)
T ss_dssp             TTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHH----HHTT---------------CCTTCCCTTCC
T ss_pred             hccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHH----HHcC---------------CCcCCcCCCCC
Confidence                                    333444443321   2222222    2222               25677899999


Q ss_pred             ChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          198 SPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       198 TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      ||||+|+..|+.+++++|    ++.+..+..|.||||+|+..++.++++.|++.|++++..|..|.++++++
T Consensus       249 t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a  320 (351)
T 3utm_A          249 TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG  320 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence            999999999999996665    46778889999999999999999999999999999999999999988875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=7.7e-31  Score=275.01  Aligned_cols=212  Identities=21%  Similarity=0.243  Sum_probs=191.8

Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911           16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH   95 (724)
Q Consensus        16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~   95 (724)
                      ...++..|.+|.||||+||..|++++|++||+ .|++++..             +.+|+||||+||..|+.++|++||++
T Consensus        49 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~  114 (285)
T 3d9h_A           49 SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNII-------------TADHVSPLHEACLGGHLSCVKILLKH  114 (285)
T ss_dssp             CCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHH-TTCCSCEE-------------CTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             hCcccCCCccCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHCCcHHHHHHHHHC
Confidence            44567889999999999999999999999999 78888876             58999999999999999999999999


Q ss_pred             CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCch
Q 004911           96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV  175 (724)
Q Consensus        96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~  175 (724)
                       |++++.. +..|.||||+|+..|+   .++|++|+++|++++..+ .|.||||+|+..|+.++++.|++.    |+   
T Consensus       115 -ga~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~----g~---  181 (285)
T 3d9h_A          115 -GAQVNGV-TADWHTPLFNACVSGS---WDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAY----GG---  181 (285)
T ss_dssp             -TCCSSCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHT----TC---
T ss_pred             -CCCCCCC-CCCCCCHHHHHHHcCH---HHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC----CC---
Confidence             9999999 9999999999999999   999999999999998655 599999999999999988877763    32   


Q ss_pred             hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc---cccCCCCccccccccCCCCCCCCCCccccccc
Q 004911          176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM---ALKFNDVSFGTGAEKREYPIDPSLPDIKNSIY  252 (724)
Q Consensus       176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a---~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~  252 (724)
                                  +++..|..|.||||+|+..|+.+++++|++.++   .+..|.||||+|+..++.++++.|++.|++++
T Consensus       182 ------------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~  249 (285)
T 3d9h_A          182 ------------NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQ  249 (285)
T ss_dssp             ------------CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ------------CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence                        456778899999999999999999777765442   36789999999999999999999999999999


Q ss_pred             cccccccccceeec
Q 004911          253 ATDEFRMFSFKIRP  266 (724)
Q Consensus       253 ~~D~~g~~~fkV~p  266 (724)
                      ..|..|.++++++.
T Consensus       250 ~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          250 AKNAEGKRPVELVP  263 (285)
T ss_dssp             CCCTTSCCGGGGSC
T ss_pred             CcCCCCCCHHHHhc
Confidence            99999999999874

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=1.5e-30  Score=261.21  Aligned_cols=205  Identities=20%  Similarity=0.231  Sum_probs=177.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004911           24 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS  103 (724)
Q Consensus        24 ~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~  103 (724)
                      ..+.|+||.||..|+++.|+.|++..+..++..             +..|+||||+||..|+.++|++|+++ |++++..
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~   69 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRT-------------DQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDK   69 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcC-------------CCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCc
Confidence            456789999999999999999998665555554             57899999999999999999999998 9999998


Q ss_pred             cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccc
Q 004911          104 CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEH  183 (724)
Q Consensus       104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~  183 (724)
                       +..|+||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++    .|+           
T Consensus        70 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~-----------  130 (231)
T 3aji_A           70 -DDAGWSPLHIAASAGX---DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE----GGA-----------  130 (231)
T ss_dssp             -CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC-----------
T ss_pred             -CCCCCCHHHHHHHcCH---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC-----------
Confidence             8999999999999999   999999999999999999999999999999999888887766    332           


Q ss_pred             ccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCcccccccccccccc
Q 004911          184 NLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRM  259 (724)
Q Consensus       184 ~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~  259 (724)
                          +++..+..|.||||+|+..|+.+++++++    +.+..+..|.||||+|+..++.++++.|++.|++++..|..+.
T Consensus       131 ----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  206 (231)
T 3aji_A          131 ----NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK  206 (231)
T ss_dssp             ----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSC
T ss_pred             ----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
Confidence                45567788999999999999998866654    5667788899999999999999999999999999999999999


Q ss_pred             ccceee
Q 004911          260 FSFKIR  265 (724)
Q Consensus       260 ~~fkV~  265 (724)
                      ++++++
T Consensus       207 t~l~~A  212 (231)
T 3aji_A          207 TPLQVA  212 (231)
T ss_dssp             CHHHHS
T ss_pred             CHHHHH
Confidence            888876

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.96  E-value=5.2e-30  Score=255.96  Aligned_cols=204  Identities=18%  Similarity=0.195  Sum_probs=180.0

Q ss_pred             cccccCCCCCCC-CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHH
Q 004911           11 NTEDMNNNSTAE-TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVL   89 (724)
Q Consensus        11 ~~~~m~~di~~~-d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evV   89 (724)
                      ...+.+.+++.. |.+|.||||+||..|++++|++||+ .|++++..             +..|+||||+|+..|+.++|
T Consensus         9 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v   74 (223)
T 2f8y_A            9 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQ-------------DNMGRTPLHAAVSADAQGVF   74 (223)
T ss_dssp             TTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHH
Confidence            344456666654 8899999999999999999999999 78888876             58899999999999999999


Q ss_pred             HHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHc
Q 004911           90 KLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFG  169 (724)
Q Consensus        90 klLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~  169 (724)
                      ++|++++..+++.. +..|.||||+|+..|+   .+++++|+++|++++..|..|+||||+|+..|+.++++.|++.   
T Consensus        75 ~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---  147 (223)
T 2f8y_A           75 QILIRNRATDLDAR-MHDGTTPLILAARLAV---EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN---  147 (223)
T ss_dssp             HHHHHBTTSCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT---
T ss_pred             HHHHHcCCCCcccC-CCCCCcHHHHHHHhCc---HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc---
Confidence            99999933489988 9999999999999999   9999999999999999999999999999999999988877763   


Q ss_pred             CCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCC
Q 004911          170 SKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLP  245 (724)
Q Consensus       170 ~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~  245 (724)
                       |+               +++..|..|.||||+|+..|+.++++.|+    +.+..+..|.||+++|+..++.++++.|+
T Consensus       148 -g~---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~  211 (223)
T 2f8y_A          148 -GA---------------NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD  211 (223)
T ss_dssp             -TC---------------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             -CC---------------CCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHH
Confidence             32               45677899999999999999999966654    66678889999999999999999999998


Q ss_pred             cccccc
Q 004911          246 DIKNSI  251 (724)
Q Consensus       246 d~ga~i  251 (724)
                      +.|+..
T Consensus       212 ~~g~~~  217 (223)
T 2f8y_A          212 EYNLVR  217 (223)
T ss_dssp             HTTCSS
T ss_pred             HcCCCc
Confidence            887643

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=1.1e-30  Score=272.43  Aligned_cols=222  Identities=18%  Similarity=0.183  Sum_probs=188.2

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911           22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN  101 (724)
Q Consensus        22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN  101 (724)
                      .+.+|.|+||.||..|++++|++||+ .|+++|..             +.+|+||||+||..|+.++|++||++ |+++|
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~  100 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLE-RGADINYA-------------NVDGLTALHQACIDDNVDMVKFLVEN-GANIN  100 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCB-------------CTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTT
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHH-cCCCCccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCC
Confidence            45578899999999999999999999 78888876             58899999999999999999999999 99999


Q ss_pred             cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccc
Q 004911          102 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGA  181 (724)
Q Consensus       102 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~  181 (724)
                      .. +..|+||||+|+..|+   .++|++||++|++++..|..|.||||+|+..++.++++.++..   .+.+........
T Consensus       101 ~~-~~~g~tpL~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~---~~~~~~~~~~~~  173 (299)
T 1s70_B          101 QP-DNEGWIPLHAAASCGY---LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR---QGVDIEAARKEE  173 (299)
T ss_dssp             CC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH---HTCCHHHHHHHH
T ss_pred             CC-CCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhh---cCCCchhhhhhh
Confidence            99 9999999999999999   9999999999999999999999999999999988888776653   111111000000


Q ss_pred             cc-----------ccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCc
Q 004911          182 EH-----------NLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPD  246 (724)
Q Consensus       182 ~~-----------~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d  246 (724)
                      ..           .-.......+..|.||||+|+..|+.++++.|+    +.+..+..|.||||+|+..|+.+++..|++
T Consensus       174 ~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  253 (299)
T 1s70_B          174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE  253 (299)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHH
Confidence            00           000122345678999999999999999966665    566788899999999999999999999999


Q ss_pred             cccccccccccccccceee
Q 004911          247 IKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       247 ~ga~i~~~D~~g~~~fkV~  265 (724)
                      .|++++..|..|.++++++
T Consensus       254 ~gad~~~~d~~g~t~l~~A  272 (299)
T 1s70_B          254 NLCDMEAVNKVGQTAFDVA  272 (299)
T ss_dssp             TTCCTTCCCTTSCCTTTSC
T ss_pred             cCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999987

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=3.2e-30  Score=257.97  Aligned_cols=204  Identities=15%  Similarity=0.116  Sum_probs=180.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC--CCcccc
Q 004911           26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS--ADVNVS  103 (724)
Q Consensus        26 g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G--ADVN~~  103 (724)
                      |.||||.||..|++++|+.||+..+..++..             +..|+||||+|+..|+.++|++|+++ |  ++++..
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~   67 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-------------DQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDY   67 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCCGGGC
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccC-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-ccccccccc
Confidence            6799999999999999999999543333323             68899999999999999999999999 8  666662


Q ss_pred             cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC--CCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccc
Q 004911          104 CGSDRTTALHCAASGGSANVVDVVRLLLSAG--ADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGA  181 (724)
Q Consensus       104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G--Ad~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~  181 (724)
                      .+..|.||||+|+..|+   .+++++|+++|  ++++..|..|.||||+|+..|+.++++.|++.    |+         
T Consensus        68 ~~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~---------  131 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGN---LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN----GA---------  131 (228)
T ss_dssp             CCTTSCCHHHHHHHHCC---HHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TC---------
T ss_pred             CCCCCCCHHHHHHHcCC---HHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc----CC---------
Confidence            28899999999999999   99999999998  99999999999999999999999988877763    42         


Q ss_pred             ccccccccCCCCCCCCChhchhHhcCCCchhhhhcC-----CCccccCCCCccccccccCCCCCCCCCC-cccccccccc
Q 004911          182 EHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS-----SPMALKFNDVSFGTGAEKREYPIDPSLP-DIKNSIYATD  255 (724)
Q Consensus       182 ~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad-----~~a~~~~g~TpLh~Aa~~g~~~i~~~L~-d~ga~i~~~D  255 (724)
                            +++..|..|.||||+|+..|+.++++.|++     .+..+..|.||||+|+..++.+++..|+ +.|++++..|
T Consensus       132 ------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~  205 (228)
T 2dzn_A          132 ------SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD  205 (228)
T ss_dssp             ------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBC
T ss_pred             ------CccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence                  456778899999999999999999777754     4567888999999999999999999999 8899999999


Q ss_pred             ccccccceee
Q 004911          256 EFRMFSFKIR  265 (724)
Q Consensus       256 ~~g~~~fkV~  265 (724)
                      ..|.++++++
T Consensus       206 ~~g~t~l~~A  215 (228)
T 2dzn_A          206 NKGAKAEDVA  215 (228)
T ss_dssp             TTSCBGGGGC
T ss_pred             CCCCcHHHHH
Confidence            9999999887

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=4e-30  Score=274.25  Aligned_cols=224  Identities=20%  Similarity=0.183  Sum_probs=182.6

Q ss_pred             ccccCCCCCCCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCCccccc--------------------cccccccCCcccC
Q 004911           12 TEDMNNNSTAETE-DSFTSMLELASNNDVEGFKRMLERDPSSVDEVG--------------------LWYGRVNGSKQMV   70 (724)
Q Consensus        12 ~~~m~~di~~~d~-~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~g--------------------l~~a~~~g~~~~d   70 (724)
                      ..+.+++++..+. .|+||||+||..|+.++|++||+ .|++++..+                    +........+..|
T Consensus        44 LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  122 (337)
T 4g8k_A           44 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECD  122 (337)
T ss_dssp             HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBC
T ss_pred             HHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhc
Confidence            3446888888775 49999999999999999999999 888887654                    2223344566778


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc---------cCCCCCcHHHHHHhCCCCCHHHHHHHHHH-CCCCCCCC
Q 004911           71 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVS---------CGSDRTTALHCAASGGSANVVDVVRLLLS-AGADPDCV  140 (724)
Q Consensus        71 ~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~---------~d~~G~TPLH~Aa~~G~~~~~eiVklLLe-~GAd~n~~  140 (724)
                      ..|+||||+|+..|+.+++++|+++ |++++..         .+..|.||||+|+..|+   .++|++||+ .|++++.+
T Consensus       123 ~~g~t~l~~A~~~~~~~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~---~~~v~~LL~~~gad~n~~  198 (337)
T 4g8k_A          123 FYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVLKILLDEMGADVNAC  198 (337)
T ss_dssp             TTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHHHTC---HHHHHHHHHHSCCCTTCC
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHc-CCCcchhhccccccccccCCCCcHHHHHHHCCC---HHHHHHHHhccCCCcCcc
Confidence            8999999999999999999999998 9988764         14568999999999999   999999996 59999999


Q ss_pred             CCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc----
Q 004911          141 DANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----  216 (724)
Q Consensus       141 D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----  216 (724)
                      |..|.|+||.++..+....++.++++|++.|+               +++.+|..|.||||+|+..|+.++++.|+    
T Consensus       199 d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~ga---------------d~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~  263 (337)
T 4g8k_A          199 DNMGRNALIHALLSSDDSDVEAITHLLLDHGA---------------DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  263 (337)
T ss_dssp             CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTC---------------CTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT
T ss_pred             CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCC---------------CCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC
Confidence            99999999988876665555666777777775               45667888888888888888888866554    


Q ss_pred             -CCCccccCCCCccccccccCCCCCCCCCCcccccccccc
Q 004911          217 -SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATD  255 (724)
Q Consensus       217 -d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D  255 (724)
                       +++.++..|.||||+|+..|+.++++.|++.|++++..|
T Consensus       264 ~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~  303 (337)
T 4g8k_A          264 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  303 (337)
T ss_dssp             CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC
T ss_pred             CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence             556778888888888888888888888888888887654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=1.7e-29  Score=254.38  Aligned_cols=197  Identities=22%  Similarity=0.185  Sum_probs=174.1

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL   94 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe   94 (724)
                      .+.+++..|..|.||||+|+..|+.++|++|++ .|++++..             +..|+||||+|+..|+.+++++|++
T Consensus        35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~l~~A~~~~~~~~~~~Ll~  100 (241)
T 1k1a_A           35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMAL-------------DRHGQTAAHLACEHRSPTCLRALLD  100 (241)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            567888999999999999999999999999999 88888876             5889999999999999999999999


Q ss_pred             cCCC----CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHhcCCCHHHHHHHHHHHHc
Q 004911           95 HSSA----DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPIDVIVLPPKLDSMRAILEEVFG  169 (724)
Q Consensus        95 ~~GA----DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLhlAa~~G~~eivk~LLe~Ll~  169 (724)
                      . ++    +++.. +..|.||||+|+..|+   .+++++|+++|++++..+ ..|.||||+|+..|+.++++.|++.   
T Consensus       101 ~-~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---  172 (241)
T 1k1a_A          101 S-AAPGTLDLEAR-NYDGLTALHVAVNTEC---QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH---  172 (241)
T ss_dssp             H-SCTTSCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---
T ss_pred             c-CCCcccccccc-CcCCCcHHHHHHHcCC---HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHc---
Confidence            9 76    88888 9999999999999999   999999999999999999 8999999999999999998877763   


Q ss_pred             CCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCC
Q 004911          170 SKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLP  245 (724)
Q Consensus       170 ~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~  245 (724)
                       |+               +++..|..|.||||+|+..|+.++++.|    ++.+.++..|.|||++|+..++.++++.|.
T Consensus       173 -g~---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~  236 (241)
T 1k1a_A          173 -GA---------------NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA  236 (241)
T ss_dssp             -TC---------------CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC--
T ss_pred             -CC---------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhc
Confidence             42               4567788999999999999999995555    566778899999999999999999999887


Q ss_pred             cccc
Q 004911          246 DIKN  249 (724)
Q Consensus       246 d~ga  249 (724)
                      +.++
T Consensus       237 ~~~a  240 (241)
T 1k1a_A          237 TRPA  240 (241)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            7543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=8.9e-30  Score=261.21  Aligned_cols=215  Identities=19%  Similarity=0.169  Sum_probs=161.4

Q ss_pred             ccCCCCCCC-CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911           14 DMNNNSTAE-TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI   92 (724)
Q Consensus        14 ~m~~di~~~-d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL   92 (724)
                      +.+.+++.. +..|.||||+|+..|+.++|++||+ .|++++..             +..|.||||+|+..|+.++|++|
T Consensus        26 ~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~L   91 (285)
T 1wdy_A           26 EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR-HGADPVLR-------------KKNGATPFLLAAIAGSVKLLKLF   91 (285)
T ss_dssp             HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCccc-------------CCCCCCHHHHHHHcCCHHHHHHH
Confidence            345666665 7778899999999999999999998 78887765             57888999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCC----------CCCCCcHHHHHhcCCCHHHHHH
Q 004911           93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCV----------DANGHHPIDVIVLPPKLDSMRA  162 (724)
Q Consensus        93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~----------D~~G~TPLhlAa~~G~~eivk~  162 (724)
                      +++ |++++.. +..|.||||+|+..|+   .+++++|+++|++++..          +..|.||||+|+..|+.++++.
T Consensus        92 l~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  166 (285)
T 1wdy_A           92 LSK-GADVNEC-DFYGFTAFMEAAVYGK---VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI  166 (285)
T ss_dssp             HHT-TCCTTCB-CTTCCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHH
T ss_pred             HHc-CCCCCcc-CcccCCHHHHHHHhCC---HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHH
Confidence            988 8999888 8889999999999998   89999999999888877          7788899999999888888887


Q ss_pred             HHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCC----Cch----hhhhcCCCccccCCCCccccccc
Q 004911          163 ILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGS----PPS----PSRLVSSPMALKFNDVSFGTGAE  234 (724)
Q Consensus       163 LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~----~ei----Ve~Lad~~a~~~~g~TpLh~Aa~  234 (724)
                      |++.   .++               +++..|..|.||||+|+..++    .++    ++.+++.+..+..|.||||+|+.
T Consensus       167 Ll~~---~~~---------------~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~  228 (285)
T 1wdy_A          167 LLDE---MGA---------------DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE  228 (285)
T ss_dssp             HHHT---SCC---------------CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred             HHHh---cCC---------------CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            7763   121               344556666666666666666    333    33334555556666666666666


Q ss_pred             cCCCCCCCCCCc-cccccccccccccccceee
Q 004911          235 KREYPIDPSLPD-IKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       235 ~g~~~i~~~L~d-~ga~i~~~D~~g~~~fkV~  265 (724)
                      .++.++++.|++ .|.+++..|..|.++++++
T Consensus       229 ~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A  260 (285)
T 1wdy_A          229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLA  260 (285)
T ss_dssp             TTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHH
T ss_pred             cCCHHHHHHHHhccCCCccccCCCCCcHHHHH
Confidence            666666666665 5666666666666666654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=1.2e-30  Score=281.29  Aligned_cols=210  Identities=14%  Similarity=0.144  Sum_probs=187.4

Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911           16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH   95 (724)
Q Consensus        16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~   95 (724)
                      +.+++..|.+|.||||+||..|++++|++||+ .|++++..             +..|+||||+||..|+.++|++||++
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~   75 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQ-------------NRFGCTALHLACKFGCVDTAKYLASV   75 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-------------CCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            34566788899999999999999999999999 78999877             68999999999999999999999999


Q ss_pred             CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC----CCCCCC-----------------CCCCCCcHHHHHhcC
Q 004911           96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA----GADPDC-----------------VDANGHHPIDVIVLP  154 (724)
Q Consensus        96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~----GAd~n~-----------------~D~~G~TPLhlAa~~  154 (724)
                       |++++.   .+|.||||+|+..|+   .++|++||++    |++++.                 .|..|.||||+|+..
T Consensus        76 -g~~~~~---~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  148 (364)
T 3ljn_A           76 -GEVHSL---WHGQKPIHLAVMANK---TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGL  148 (364)
T ss_dssp             -CCCCCC---BTTBCHHHHHHHTTC---HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHS
T ss_pred             -CCCccc---cCCCCHHHHHHHcCC---HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHc
Confidence             997764   479999999999999   9999999999    888887                 889999999999999


Q ss_pred             C--CHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcC---------CCcccc
Q 004911          155 P--KLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS---------SPMALK  223 (724)
Q Consensus       155 G--~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad---------~~a~~~  223 (724)
                      |  +.++++.|++.    |+               +++..|..|.||||+|+..|+.+++++|++         .+..+.
T Consensus       149 g~~~~~~v~~Ll~~----ga---------------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~  209 (364)
T 3ljn_A          149 GPEYLEMIKILVQL----GA---------------SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK  209 (364)
T ss_dssp             CGGGHHHHHHHHHH----TC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT
T ss_pred             CCchHHHHHHHHHc----CC---------------CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCC
Confidence            9  99999988875    32               456778899999999999999999877774         677788


Q ss_pred             CCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          224 FNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       224 ~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      .|.||||+|+..|+.++++.|++.|++++..|..+.++++++
T Consensus       210 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  251 (364)
T 3ljn_A          210 QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS  251 (364)
T ss_dssp             TCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            999999999999999999999999999999999999999886

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=3.5e-30  Score=258.62  Aligned_cols=194  Identities=22%  Similarity=0.227  Sum_probs=174.4

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA   98 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA   98 (724)
                      ++..+.+|.||||+|+..|++++|++|++ .|++++..             +..|+||||+|+..|+.++|++|+++ |+
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~   97 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDK-------------DDAGWSPLHIAASAGXDEIVKALLVK-GA   97 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TC
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHH-hCCCCCCc-------------CCCCCCHHHHHHHcCHHHHHHHHHHc-CC
Confidence            56778999999999999999999999999 78888876             58899999999999999999999999 99


Q ss_pred             CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhh
Q 004911           99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVA  178 (724)
Q Consensus        99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~a  178 (724)
                      +++.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++    .|+      
T Consensus        98 ~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~------  163 (231)
T 3aji_A           98 HVNAV-NQNGCTPLHYAASKNR---HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF----YKA------  163 (231)
T ss_dssp             CTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTC------
T ss_pred             CCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh----cCC------
Confidence            99999 9999999999999999   999999999999999999999999999999999998887776    332      


Q ss_pred             cccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCccccc
Q 004911          179 SGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNS  250 (724)
Q Consensus       179 a~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~  250 (724)
                               +++..|..|.||||+|+..|+.+++++|    ++.+.++..|.||+++|...++..+.+.|.+.+++
T Consensus       164 ---------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          164 ---------STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             ---------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             ---------CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence                     4567789999999999999999996555    56667888999999999998888887777666554

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=1.2e-30  Score=273.90  Aligned_cols=198  Identities=16%  Similarity=0.148  Sum_probs=178.9

Q ss_pred             CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911           17 NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS   96 (724)
Q Consensus        17 ~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~   96 (724)
                      .+++..|.+|.||||+||..|++++|++||+ .|++++..               +|+||||+||..|+.++|++||++ 
T Consensus        22 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~---------------~g~t~L~~A~~~g~~~~v~~Ll~~-   84 (285)
T 3kea_A           22 KDTFKADVHGHSASYYAIADNNVRLVCTLLN-AGALKNLL---------------ENEFPLHQAATLEDTKIVKILLFS-   84 (285)
T ss_dssp             TTTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTGGGSCC---------------TTCCHHHHHTTSSSCHHHHHHHHT-
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCC---------------CCCCHHHHHHHcCCHHHHHHHHHC-
Confidence            3688999999999999999999999999999 78888864               489999999999999999999999 


Q ss_pred             CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCC-CcHHHHHhcCCCHHHHHHHHHHHHcCCCCch
Q 004911           97 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG-HHPIDVIVLPPKLDSMRAILEEVFGSKNSSV  175 (724)
Q Consensus        97 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G-~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~  175 (724)
                      |+++|.. +..|+||||+|+..|+   .++|++|+++|++++.+|..| .||||+|+..|+.++++.|++.    |+.  
T Consensus        85 ga~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~----g~~--  154 (285)
T 3kea_A           85 GLDDSQF-DDKGNTALYYAVDSGN---MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE----IPS--  154 (285)
T ss_dssp             TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT----SCT--
T ss_pred             CCCCCCc-CCCCCcHHHHHHHcCC---HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCc--
Confidence            9999998 9999999999999999   999999999999999999999 7999999999999888877663    321  


Q ss_pred             hhhcccccccccccCCCCC-CCCChhchhHhcCCCchhhhh----cCCCccccCCCCc-cccccccCCCCCCCCCCcccc
Q 004911          176 VVASGAEHNLTVSIGSSNS-DYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVS-FGTGAEKREYPIDPSLPDIKN  249 (724)
Q Consensus       176 ~~aa~~~~~l~~~in~~d~-~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~Tp-Lh~Aa~~g~~~i~~~L~d~ga  249 (724)
                                     ..+. .|.||||+|+..|+.+++++|    ++.+..+..|.|| ||+|+..++.++++.|++.|+
T Consensus       155 ---------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga  219 (285)
T 3kea_A          155 ---------------TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI  219 (285)
T ss_dssp             ---------------TCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB
T ss_pred             ---------------cccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC
Confidence                           1122 789999999999999995555    5778889999998 999999999999999999999


Q ss_pred             ccccccc
Q 004911          250 SIYATDE  256 (724)
Q Consensus       250 ~i~~~D~  256 (724)
                      +++..|.
T Consensus       220 d~~~~~~  226 (285)
T 3kea_A          220 NIYSANL  226 (285)
T ss_dssp             CSTTTTG
T ss_pred             CCCCCCh
Confidence            9998885

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=2e-30  Score=271.03  Aligned_cols=215  Identities=17%  Similarity=0.195  Sum_probs=116.5

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCH-HHHHHHHhcCCCC
Q 004911           21 AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSV-DVLKLILLHSSAD   99 (724)
Q Consensus        21 ~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~-evVklLLe~~GAD   99 (724)
                      .+|..+.++|+.||..|++++|++||+ .+.+.....     .......+..|.||||.|+..+.. .++++|++. |+|
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~-~~~~~~~~~-----~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gad   78 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLE-WTEEDLEDA-----EDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLG   78 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHT-CC---------------------------------------------C-CCC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHH-CCCcccccc-----cccccccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCC
Confidence            356678899999999999999999999 444321110     111122345566666666665554 355666666 666


Q ss_pred             cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhc
Q 004911          100 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVAS  179 (724)
Q Consensus       100 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa  179 (724)
                      ||.. |.+|+||||+||..|+   .++|++||+.|++++..+..|.||+|+|+..++.++++.|++    .|+       
T Consensus        79 vn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~----~g~-------  143 (269)
T 4b93_B           79 VNVT-SQDGSSPLHVAALHGR---ADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD----SNA-------  143 (269)
T ss_dssp             TTCC-CTTSCCHHHHHHHTTC---TTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTC-------
T ss_pred             CCCc-CCCCCCHHHHHHHcCc---HHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHH----CCC-------
Confidence            6666 6666666666666666   666666666666666666666666666666666665555444    221       


Q ss_pred             ccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCcccccccccc
Q 004911          180 GAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATD  255 (724)
Q Consensus       180 ~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D  255 (724)
                              +++..|..|.||||+|+..|+.++|++|    ++++..+..|.||||+|+..|+.++++.|++.|++++..|
T Consensus       144 --------~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d  215 (269)
T 4b93_B          144 --------KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN  215 (269)
T ss_dssp             --------CSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             --------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence                    3445566666666666666666664333    3445556666666666666666666666666666666666


Q ss_pred             ccccccceee
Q 004911          256 EFRMFSFKIR  265 (724)
Q Consensus       256 ~~g~~~fkV~  265 (724)
                      ..|.++++++
T Consensus       216 ~~G~TpL~~A  225 (269)
T 4b93_B          216 KRQRTAVDCA  225 (269)
T ss_dssp             TTSCCSGGGS
T ss_pred             CCCCCHHHHH
Confidence            6666666655

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=5.6e-29  Score=242.93  Aligned_cols=157  Identities=31%  Similarity=0.439  Sum_probs=143.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC
Q 004911           28 TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSD  107 (724)
Q Consensus        28 TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~  107 (724)
                      +.|+.||..|++++|+.||+ .|+++|..             |.+|+||||+|+..|+.+++++||+. |+|++.+ +.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~-------------d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~-d~~   69 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIE-NGADVNAS-------------DSDGRTPLHHAAENGHKEVVKLLISK-GADVNAK-DSD   69 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTT
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhh-ccC
Confidence            57999999999999999999 89999987             68999999999999999999999999 9999999 999


Q ss_pred             CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccccc
Q 004911          108 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTV  187 (724)
Q Consensus       108 G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~  187 (724)
                      |+||||+|+..|+   .++|++||++|+|+|.+|.+|+||||+|+..|+.++++.|++    .|+               
T Consensus        70 g~TpLh~A~~~g~---~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~----~ga---------------  127 (169)
T 4gpm_A           70 GRTPLHHAAENGH---KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS----KGA---------------  127 (169)
T ss_dssp             SCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC---------------
T ss_pred             CCCHHHHHHHcCC---HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC---------------
Confidence            9999999999999   999999999999999999999999999999999998887766    343               


Q ss_pred             ccCCCCCCCCChhchhHhcCCCchhhhhcCCCccc
Q 004911          188 SIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMAL  222 (724)
Q Consensus       188 ~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~  222 (724)
                      +++.+|.+|.||||+|+..|+.+++++|++.++..
T Consensus       128 d~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            56678999999999999999999999999888643

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=1.5e-29  Score=259.63  Aligned_cols=211  Identities=23%  Similarity=0.217  Sum_probs=187.6

Q ss_pred             ccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHH
Q 004911           12 TEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKL   91 (724)
Q Consensus        12 ~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVkl   91 (724)
                      ..+.+.+++..+.+|.||||+|+..|+.++|++|++ .|++++..             +..|+||||+|+..|+.+++++
T Consensus        58 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~  123 (285)
T 1wdy_A           58 LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNEC-------------DFYGFTAFMEAAVYGKVKALKF  123 (285)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCB-------------CTTCCBHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CcccCCHHHHHHHhCCHHHHHH
Confidence            344677888999999999999999999999999999 78888876             5889999999999999999999


Q ss_pred             HHhcCCCCccccc---------CCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHhcCCCHHHHH
Q 004911           92 ILLHSSADVNVSC---------GSDRTTALHCAASGGSANVVDVVRLLLSA-GADPDCVDANGHHPIDVIVLPPKLDSMR  161 (724)
Q Consensus        92 LLe~~GADVN~~~---------d~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~n~~D~~G~TPLhlAa~~G~~eivk  161 (724)
                      |+++ |++++...         +..|.||||+|+..|+   .+++++|++. |++++..|..|+||||+|+..++.+.+.
T Consensus       124 Ll~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  199 (285)
T 1wdy_A          124 LYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE  199 (285)
T ss_dssp             HHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC---HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHH
T ss_pred             HHHh-CCCcccccccHHHHHhhccCCCcHHHHHHHcCC---HHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHH
Confidence            9999 99998762         5679999999999999   9999999998 9999999999999999999999954444


Q ss_pred             HHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc-----CCCccccCCCCccccccccC
Q 004911          162 AILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV-----SSPMALKFNDVSFGTGAEKR  236 (724)
Q Consensus       162 ~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La-----d~~a~~~~g~TpLh~Aa~~g  236 (724)
                      .+++.|++.|+               +++..|..|.||||+|+..|+.+++++|+     +.+..+..|.||||+|+..+
T Consensus       200 ~i~~~Ll~~g~---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~  264 (285)
T 1wdy_A          200 AITHLLLDHGA---------------DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             HHHHHHHHTTC---------------CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCC---------------CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence            55555666664               56677899999999999999999977665     45788889999999999999


Q ss_pred             CCCCCCCCCcccccccccc
Q 004911          237 EYPIDPSLPDIKNSIYATD  255 (724)
Q Consensus       237 ~~~i~~~L~d~ga~i~~~D  255 (724)
                      +.++++.|++.|++++..|
T Consensus       265 ~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          265 LKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             CHHHHHHHHHHSSCSCCSS
T ss_pred             cHHHHHHHHHcCCCCCccc
Confidence            9999999999999998877

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=1.8e-30  Score=262.69  Aligned_cols=209  Identities=13%  Similarity=0.100  Sum_probs=174.6

Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhcCC---CCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911           20 TAETEDSFTSMLELASNNDVEGFKRMLERDP---SSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS   96 (724)
Q Consensus        20 ~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~g---adIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~   96 (724)
                      +..|.+|.||||+||..|+.++|+.||+...   ++++..             +..|+||||+||..|+.++|++||++ 
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-   67 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-------------NNLQQTPLHLAVITNQPEIAEALLGA-   67 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-------------CTTCCCHHHHHHHTTCHHHHHCCCSC-
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-
Confidence            3568899999999999999999999998432   256655             57899999999999999999999999 


Q ss_pred             CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC------CCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcC
Q 004911           97 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD------PDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGS  170 (724)
Q Consensus        97 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd------~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~  170 (724)
                      |++++.. +..|.||||+|+..|+   .+++++|+++|++      ++..|..|.||||+|+..|+.++++.|++.    
T Consensus        68 g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----  139 (236)
T 1ikn_D           68 GCDPELR-DFRGNTPLHLACEQGC---LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL----  139 (236)
T ss_dssp             CCCSCCC-CTTCCCHHHHHHHHTC---HHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH----
T ss_pred             CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc----
Confidence            9999998 9999999999999999   9999999999986      467888999999999999999999888775    


Q ss_pred             CCCchhhhcccccccccccCCCCC-CCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCC
Q 004911          171 KNSSVVVASGAEHNLTVSIGSSNS-DYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLP  245 (724)
Q Consensus       171 ga~~~~~aa~~~~~l~~~in~~d~-~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~  245 (724)
                      |+               +++..+. .|.||||+|+..|+.+++++|+    +.+..+..|.||||+|+..++.++++.|+
T Consensus       140 g~---------------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll  204 (236)
T 1ikn_D          140 GA---------------DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG  204 (236)
T ss_dssp             TC---------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH
T ss_pred             CC---------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHH
Confidence            32               4556676 8999999999999999966655    55677888999999999999999999999


Q ss_pred             ccccccc--cccccccccceee
Q 004911          246 DIKNSIY--ATDEFRMFSFKIR  265 (724)
Q Consensus       246 d~ga~i~--~~D~~g~~~fkV~  265 (724)
                      +.|++..  ..+..+.+++...
T Consensus       205 ~~ga~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          205 QLTLENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             TTSCGGGSSCCCCCTTTCCCCC
T ss_pred             HcchhhhhcCCccchHHHHhhh
Confidence            9998765  5666666666554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=2.1e-29  Score=263.28  Aligned_cols=211  Identities=21%  Similarity=0.267  Sum_probs=142.5

Q ss_pred             CCCCCCCCCCchHHHHHHHcCCHH-HHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911           17 NNSTAETEDSFTSMLELASNNDVE-GFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH   95 (724)
Q Consensus        17 ~di~~~d~~g~TpLh~AA~~G~le-~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~   95 (724)
                      ..++..+..+.||||.|+..++.+ +++.|++ .|+++|..             |.+|+||||+||..|+.++|++||+.
T Consensus        43 ~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~-~Gadvn~~-------------d~~G~TpLh~A~~~g~~~~v~~Ll~~  108 (269)
T 4b93_B           43 DTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA-SGLGVNVT-------------SQDGSSPLHVAALHGRADLIPLLLKH  108 (269)
T ss_dssp             ---------------------------------CCCCTTCC-------------CTTSCCHHHHHHHTTCTTHHHHHHHT
T ss_pred             ccccccCccCCCHHHHHHHhCCHHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHhc
Confidence            346678889999999999988765 7788888 89999987             68999999999999999999999999


Q ss_pred             CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCch
Q 004911           96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV  175 (724)
Q Consensus        96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~  175 (724)
                       |++++.. +.+|.||||+|+..++   .+++++||++|++++.+|..|+||||+|+..|+.++++.|++    .|+   
T Consensus       109 -~a~~~~~-~~~g~t~l~~a~~~~~---~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~----~ga---  176 (269)
T 4b93_B          109 -GANAGAR-NADQAVPLHLACQQGH---FQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ----HGA---  176 (269)
T ss_dssp             -TCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHH----TTC---
T ss_pred             -CCCcCcc-CCCCCCccccccccCh---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH----CCC---
Confidence             9999999 9999999999999999   999999999999999999999999999999999998887776    343   


Q ss_pred             hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCC-CCCCCCCCccccc
Q 004911          176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKRE-YPIDPSLPDIKNS  250 (724)
Q Consensus       176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~-~~i~~~L~d~ga~  250 (724)
                                  +++..+..|.||||+|+..|+.++|+.|    +++++++..|.||||+|+..++ .++.+.|...++.
T Consensus       177 ------------dvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~  244 (269)
T 4b93_B          177 ------------SINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS  244 (269)
T ss_dssp             ------------CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred             ------------CCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence                        5677889999999999999999995554    5777889999999999998876 3445555554443


Q ss_pred             c---ccccccccccceee
Q 004911          251 I---YATDEFRMFSFKIR  265 (724)
Q Consensus       251 i---~~~D~~g~~~fkV~  265 (724)
                      +   ..+|......++++
T Consensus       245 ~~~~~~td~~~~~~~~ir  262 (269)
T 4b93_B          245 LDDVAETDRKEYVTVKIR  262 (269)
T ss_dssp             ------------------
T ss_pred             hhhccCCChhhhHHHHHh
Confidence            3   33444444344443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=1.3e-29  Score=260.12  Aligned_cols=196  Identities=19%  Similarity=0.197  Sum_probs=169.5

Q ss_pred             ccCCCCCC-CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911           14 DMNNNSTA-ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI   92 (724)
Q Consensus        14 ~m~~di~~-~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL   92 (724)
                      +.+.+++. .|.+|.||||+||..|+.++|++||+ .|++++..             +..|+||||+|+..|+.++|++|
T Consensus        44 ~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~L  109 (253)
T 1yyh_A           44 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQ-------------DNMGRTPLHAAVSADAQGVFQIL  109 (253)
T ss_dssp             --------CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHH
Confidence            34555543 58899999999999999999999999 78998876             58899999999999999999999


Q ss_pred             HhcCCC-CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCC
Q 004911           93 LLHSSA-DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSK  171 (724)
Q Consensus        93 Le~~GA-DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~g  171 (724)
                      |++ |+ +++.. +..|.||||+|+..|+   .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++.    |
T Consensus       110 l~~-~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----g  180 (253)
T 1yyh_A          110 IRN-RATDLDAR-MHDGTTPLILAARLAV---EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN----G  180 (253)
T ss_dssp             HHS-TTSCTTCC-CTTCCCHHHHHHHHTC---SSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT----T
T ss_pred             HHc-CCCCcccc-CCCCCcHHHHHHHcCh---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc----C
Confidence            999 65 99998 9999999999999999   9999999999999999999999999999999999988877763    4


Q ss_pred             CCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCcc
Q 004911          172 NSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDI  247 (724)
Q Consensus       172 a~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~  247 (724)
                      +               +++..|..|.||||+|+..|+.++++.|    ++.+..+..|.||+++|+..|+.+++..|...
T Consensus       181 a---------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          181 A---------------NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             C---------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             C---------------CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            3               4567789999999999999999996555    46667889999999999999999988766443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=1.1e-29  Score=280.17  Aligned_cols=212  Identities=23%  Similarity=0.263  Sum_probs=171.4

Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911           16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH   95 (724)
Q Consensus        16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~   95 (724)
                      +++++..+..|.||||+||..|++++|++||+ .|++++..             +..|.||||+||..|+.++|++||++
T Consensus         4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------~~~~~t~L~~A~~~g~~~~v~~Ll~~   69 (437)
T 1n11_A            4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQ-RGASPNVS-------------NVKVETPLHMAARAGHTEVAKYLLQN   69 (437)
T ss_dssp             -----------CCHHHHHHHHTCHHHHHHHHH-TTCCSCCS-------------SSCCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            56778899999999999999999999999999 78888876             57899999999999999999999999


Q ss_pred             CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCch
Q 004911           96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV  175 (724)
Q Consensus        96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~  175 (724)
                       |+++|.. +.+|.||||+|+..|+   .++|++|+++|++++..|..|.||||+|+..|+.++++.|++.    ++   
T Consensus        70 -g~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~---  137 (437)
T 1n11_A           70 -KAKVNAK-AKDDQTPLHCAARIGH---TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK----EA---  137 (437)
T ss_dssp             -TCCSSCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TC---
T ss_pred             -CCCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC----CC---
Confidence             9999998 9999999999999999   9999999999999999999999999999999999999888763    21   


Q ss_pred             hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCcccccc
Q 004911          176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSI  251 (724)
Q Consensus       176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i  251 (724)
                                  .++..+..|.||||+|+..|+.+++++|+    +.+..+..|.||||+|+..++.++++.|++.+.++
T Consensus       138 ------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  205 (437)
T 1n11_A          138 ------------SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP  205 (437)
T ss_dssp             ------------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS
T ss_pred             ------------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence                        23345667788888888888887766554    44556667788888888888888888888877777


Q ss_pred             ccccccccccceee
Q 004911          252 YATDEFRMFSFKIR  265 (724)
Q Consensus       252 ~~~D~~g~~~fkV~  265 (724)
                      ...+..+.++++.+
T Consensus       206 ~~~~~~g~t~L~~A  219 (437)
T 1n11_A          206 HSPAWNGYTPLHIA  219 (437)
T ss_dssp             CCCCTTCCCHHHHH
T ss_pred             CCcCCCCCCHHHHH
Confidence            77777777666654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=3.6e-29  Score=245.83  Aligned_cols=189  Identities=19%  Similarity=0.226  Sum_probs=168.6

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004911           24 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS  103 (724)
Q Consensus        24 ~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~  103 (724)
                      ..+.|+||.||..|+.+.|+.||+..+.+++..             +.+|+||||+||..|+.++|++||++ |++++..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~   68 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-------------DTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQ   68 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC
Confidence            467899999999999999999999777788876             58899999999999999999999999 9999998


Q ss_pred             cCCCCCcHHHHHHhCCCCCHHHHHHHHH-HCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccc
Q 004911          104 CGSDRTTALHCAASGGSANVVDVVRLLL-SAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE  182 (724)
Q Consensus       104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLL-e~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~  182 (724)
                       +..|.||||+|+..|+   .+++++|+ ..+++++..|..|.||||+|+..|+.++++.|++.    +.          
T Consensus        69 -~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~----------  130 (201)
T 3hra_A           69 -NSISDSPYLYAGAQGR---TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED----GR----------  130 (201)
T ss_dssp             -CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH----CC----------
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc----CC----------
Confidence             9999999999999999   99999999 56889999999999999999999999999988875    20          


Q ss_pred             cccccccCCCCCCCCChhchhHhcCC-----Cchhhh----hcCCCccccCCCCccccccccCCCCCCCCCCccc
Q 004911          183 HNLTVSIGSSNSDYSSPLLTASASGS-----PPSPSR----LVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIK  248 (724)
Q Consensus       183 ~~l~~~in~~d~~G~TPLh~Aa~~G~-----~eiVe~----Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~g  248 (724)
                          .+++..|..|.||||+|+..+.     .++++.    +++.+..+..|.||||+|+..++.++++.|++.|
T Consensus       131 ----~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          131 ----EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             ----CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             ----CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence                1567788999999999999988     667544    5677788999999999999999998888776654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=3.5e-30  Score=280.42  Aligned_cols=221  Identities=16%  Similarity=0.156  Sum_probs=193.6

Q ss_pred             CCCCCCCC-CCCchHHHHHHHcCCHHHHHHHHh-------cCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHH
Q 004911           16 NNNSTAET-EDSFTSMLELASNNDVEGFKRMLE-------RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVD   87 (724)
Q Consensus        16 ~~di~~~d-~~g~TpLh~AA~~G~le~Vk~LLe-------~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~e   87 (724)
                      +.+++..| ..|.||||+||..|+.++|+.||.       ..|+++|..             |.+|.||||+||..|+.+
T Consensus       114 ~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~-------------d~~g~TpL~~A~~~g~~~  180 (373)
T 2fo1_E          114 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-------------DCDENTPLMLAVLARRRR  180 (373)
T ss_dssp             TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-------------CTTSCCHHHHHHHHTCHH
T ss_pred             cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC-------------CCCCCCHHHHHHHcChHH
Confidence            45678877 789999999999999999888873       388998887             689999999999999999


Q ss_pred             HHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC---CCCCCCCCCCCcHHHHHhcCC---CHHHHH
Q 004911           88 VLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG---ADPDCVDANGHHPIDVIVLPP---KLDSMR  161 (724)
Q Consensus        88 vVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G---Ad~n~~D~~G~TPLhlAa~~G---~~eivk  161 (724)
                      +|++||++ |++++.. +..|.||||+|+..|+   .++|++||++|   ++++..|..|.||||+|+..+   +.++++
T Consensus       181 iv~~Ll~~-ga~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~  255 (373)
T 2fo1_E          181 LVAYLMKA-GADPTIY-NKSERSALHQAAANRD---FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK  255 (373)
T ss_dssp             HHHHHHHT-TCCSCCC-CTTCCCHHHHHHHTTC---HHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHH
T ss_pred             HHHHHHHC-CCCCccc-CCCCCCHHHHHHHCCC---HHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHH
Confidence            99999999 9999998 9999999999999999   99999999998   899999999999999999987   788888


Q ss_pred             HHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc-----CCCccccCCCCccccccccC
Q 004911          162 AILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV-----SSPMALKFNDVSFGTGAEKR  236 (724)
Q Consensus       162 ~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La-----d~~a~~~~g~TpLh~Aa~~g  236 (724)
                      .|++.......           ......+..|..|.||||+|+..|+.++|++|+     +.+..+..|.||||+|+..|
T Consensus       256 ~Ll~~g~~~~~-----------~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g  324 (373)
T 2fo1_E          256 LLVEKGAKVDY-----------DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG  324 (373)
T ss_dssp             HHHHHTCCSSC-----------CSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT
T ss_pred             HHHHCCCCccc-----------ccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcC
Confidence            77775322221           001134556889999999999999999977765     56678889999999999999


Q ss_pred             CCCCCCCCCccccccccccccccccceee
Q 004911          237 EYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       237 ~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      +.++++.|++.|++++..|..|.++++++
T Consensus       325 ~~~iv~~Ll~~gad~~~~d~~g~t~l~~A  353 (373)
T 2fo1_E          325 RIEVVMYLIQQGASVEAVDATDHTARQLA  353 (373)
T ss_dssp             CHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             CHHHHHHHHHcCCCccCCCCCCCCHHHHH
Confidence            99999999999999999999999998886

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=2.9e-29  Score=276.66  Aligned_cols=233  Identities=19%  Similarity=0.186  Sum_probs=154.4

Q ss_pred             ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911           14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL   93 (724)
Q Consensus        14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL   93 (724)
                      +.+.+++..+..|.||||+|+..|+++++++|++ .+++++..             +..|.||||+|+..|+.++|++|+
T Consensus       134 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll  199 (437)
T 1n11_A          134 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAA-------------GKNGLTPLHVAVHHNNLDIVKLLL  199 (437)
T ss_dssp             HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CSSCCCHHHHHHHTTCHHHHHHHG
T ss_pred             hCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3455666777788888888888888888888888 67777665             345555555555555555555555


Q ss_pred             hcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcC---
Q 004911           94 LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGS---  170 (724)
Q Consensus        94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~---  170 (724)
                      ++ |++++.. +..|.||||+|+..|+   .+++++|+++|++++..+..|.||||+|+..|+.++++.|++.....   
T Consensus       200 ~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~  274 (437)
T 1n11_A          200 PR-GGSPHSP-AWNGYTPLHIAAKQNQ---VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG  274 (437)
T ss_dssp             GG-TCCSCCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC
T ss_pred             hC-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCC
Confidence            55 5555554 5555555555555555   55555555555555555555555555555555555554444321110   


Q ss_pred             ---CCCchhhhcccccc--------cccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCcccccccc
Q 004911          171 ---KNSSVVVASGAEHN--------LTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEK  235 (724)
Q Consensus       171 ---ga~~~~~aa~~~~~--------l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~  235 (724)
                         |.++.+.++.....        ...+++..+..|.||||+|+..|+.++|++|+    +++.++..|.||||+|+..
T Consensus       275 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~  354 (437)
T 1n11_A          275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ  354 (437)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHC
Confidence               11111111111100        01256778899999999999999999966654    5667888899999999999


Q ss_pred             CCCCCCCCCCccccccccccccccccceee
Q 004911          236 REYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       236 g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      |+.++++.|++.|++++..|..|.++++++
T Consensus       355 g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A  384 (437)
T 1n11_A          355 GHTDIVTLLLKNGASPNEVSSDGTTPLAIA  384 (437)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             ChHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            999999999999999999999999998886

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=1.1e-29  Score=273.55  Aligned_cols=208  Identities=13%  Similarity=0.106  Sum_probs=181.3

Q ss_pred             ccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHH
Q 004911           12 TEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKL   91 (724)
Q Consensus        12 ~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVkl   91 (724)
                      ..+.+++++..|..|.||||+||..|++++|++||+ .|++++.               .+|.||||+|+..|+.++|++
T Consensus        39 Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~---------------~~g~t~L~~A~~~g~~~~v~~  102 (364)
T 3ljn_A           39 LIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS-VGEVHSL---------------WHGQKPIHLAVMANKTDLVVA  102 (364)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHH-HCCCCCC---------------BTTBCHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCccc---------------cCCCCHHHHHHHcCCHHHHHH
Confidence            344678899999999999999999999999999999 5666554               469999999999999999999


Q ss_pred             HHhcC---CCCccc-----------------ccCCCCCcHHHHHHhCC--CCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911           92 ILLHS---SADVNV-----------------SCGSDRTTALHCAASGG--SANVVDVVRLLLSAGADPDCVDANGHHPID  149 (724)
Q Consensus        92 LLe~~---GADVN~-----------------~~d~~G~TPLH~Aa~~G--~~~~~eiVklLLe~GAd~n~~D~~G~TPLh  149 (724)
                      ||+..   |++++.                 . +..|.||||+|+..|  +   .++|++||++|++++.+|..|+||||
T Consensus       103 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~---~~~v~~Ll~~ga~~~~~d~~g~t~L~  178 (364)
T 3ljn_A          103 LVEGAKERGQMPESLLNECDEREVNEIGSHVK-HCKGQTALHWCVGLGPEY---LEMIKILVQLGASPTAKDKADETPLM  178 (364)
T ss_dssp             HHHHHHHHTCCHHHHHTCCCCCCEEEETTEEE-EESCCCHHHHHHHSCGGG---HHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HHHhccccCCCHHHHHhhcchHhhhhhccccC-CCCCCCHHHHHHHcCCch---HHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            99862   566666                 6 789999999999999  8   99999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCC
Q 004911          150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFN  225 (724)
Q Consensus       150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g  225 (724)
                      +|+..|+.++++.|++.+...              ...+++..|..|.||||+|+..|+.++|++|+    +++..+..|
T Consensus       179 ~A~~~g~~~~v~~Ll~~g~~~--------------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g  244 (364)
T 3ljn_A          179 RAMEFRNREALDLMMDTVPSK--------------SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEH  244 (364)
T ss_dssp             HHHHTTCHHHHHHHHHHCSCS--------------SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTS
T ss_pred             HHHHcCCHHHHHHHHhccccc--------------ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            999999999999888753221              11247788999999999999999999966655    666888999


Q ss_pred             CCccccccccCCCCCCCCCCcccccccc
Q 004911          226 DVSFGTGAEKREYPIDPSLPDIKNSIYA  253 (724)
Q Consensus       226 ~TpLh~Aa~~g~~~i~~~L~d~ga~i~~  253 (724)
                      .||||+|+..|+.++++.|++.++.+..
T Consensus       245 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  272 (364)
T 3ljn_A          245 TVPLYLSVRAAMVLLTKELLQKTDVFLI  272 (364)
T ss_dssp             CCHHHHHHHTCCHHHHHHHHHHSCHHHH
T ss_pred             CCHHHHHHHhChHHHHHHHHHcCCchhh
Confidence            9999999999999999999998876643

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=5.8e-29  Score=265.20  Aligned_cols=216  Identities=22%  Similarity=0.205  Sum_probs=181.9

Q ss_pred             ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911           14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL   93 (724)
Q Consensus        14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL   93 (724)
                      ..+.+++..|..|.||||+|+..|+.+++++|++ .|++++...   .........+..|.||||+||..|+.++|++||
T Consensus       113 ~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~-~ga~~~~~~---~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL  188 (337)
T 4g8k_A          113 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRR---KTKEDQERLRKGGATALMDAAEKGHVEVLKILL  188 (337)
T ss_dssp             TTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCC---CCC-----CTTCSCCHHHHHHHHTCHHHHHHHH
T ss_pred             hccchhhhhccCCCCHHHHHHHcCcHHHHHHHHH-cCCCcchhh---ccccccccccCCCCcHHHHHHHCCCHHHHHHHH
Confidence            3566788899999999999999999999999999 888887642   122233345678999999999999999999999


Q ss_pred             hcCCCCcccccCCCCCcHHHHHHhCCCC-CHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911           94 LHSSADVNVSCGSDRTTALHCAASGGSA-NVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN  172 (724)
Q Consensus        94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~-~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga  172 (724)
                      ++.|+|+|.. +..|.|+||+++..+.. ...+++++|+++|+++|.+|..|+||||+|+..|+.++++.|++.   .+ 
T Consensus       189 ~~~gad~n~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~-  263 (337)
T 4g8k_A          189 DEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EH-  263 (337)
T ss_dssp             HHSCCCTTCC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TT-
T ss_pred             hccCCCcCcc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cC-
Confidence            7669999999 99999999988765542 235689999999999999999999999999999999988876652   22 


Q ss_pred             CchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccCCCCccccccccCCCCCCCCCCccccccc
Q 004911          173 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIY  252 (724)
Q Consensus       173 ~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~  252 (724)
                                    .+++.+|.+|.||||+|+..|+.++|++|++.++. .+..+|||+|+..++.++++.|++.|++++
T Consensus       264 --------------~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd-~n~~~~L~~A~~~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          264 --------------IEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS-TDCGDLVMTARRNYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             --------------CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS-STTCCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred             --------------CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence                          25778899999999999999999999999988864 456689999999999999999999999886


Q ss_pred             c
Q 004911          253 A  253 (724)
Q Consensus       253 ~  253 (724)
                      .
T Consensus       329 ~  329 (337)
T 4g8k_A          329 F  329 (337)
T ss_dssp             -
T ss_pred             C
Confidence            5

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=6.4e-29  Score=262.99  Aligned_cols=225  Identities=20%  Similarity=0.194  Sum_probs=190.8

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA   98 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA   98 (724)
                      .+..+..+.|+||.||..|+++.|+.||...+.+++..             |..|+||||+||..|+.++|++||++ |+
T Consensus        17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~   82 (351)
T 3utm_A           17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-------------DGRKSTPLHLAAGYNRVRIVQLLLQH-GA   82 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-------------STTCCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence            34556678899999999999999999999778888876             68899999999999999999999999 99


Q ss_pred             CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhh
Q 004911           99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVA  178 (724)
Q Consensus        99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~a  178 (724)
                      ++|.. +..|.||||+|+..|+   .++|++|+++|++++..|..|.||||+|+..|+.++++.|++.    |++.....
T Consensus        83 ~~~~~-~~~g~t~L~~A~~~g~---~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~  154 (351)
T 3utm_A           83 DVHAK-DKGGLVPLHNACSYGH---YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH----GADPTLVN  154 (351)
T ss_dssp             CTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCC
T ss_pred             CCCcc-CCCCCcHHHHHHHCCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCcccc
Confidence            99999 9999999999999999   9999999999999999999999999999999999999888775    33222111


Q ss_pred             cccccccc---------------------------------------cccCCCCCCCCChhchhHhcCCC---ch----h
Q 004911          179 SGAEHNLT---------------------------------------VSIGSSNSDYSSPLLTASASGSP---PS----P  212 (724)
Q Consensus       179 a~~~~~l~---------------------------------------~~in~~d~~G~TPLh~Aa~~G~~---ei----V  212 (724)
                      ..+...+.                                       ......+..|.||||+|+..++.   ++    +
T Consensus       155 ~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll  234 (351)
T 3utm_A          155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLL  234 (351)
T ss_dssp             TTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHH
T ss_pred             CCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHH
Confidence            11111100                                       01123567889999999999654   45    4


Q ss_pred             hhhcCCCccccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          213 SRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       213 e~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      +.+++.+..+..|.||||+|+..|+.++++.|++.|++++..|..|.++++.+
T Consensus       235 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A  287 (351)
T 3utm_A          235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA  287 (351)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            45567778899999999999999999999999999999999999999999886

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.96  E-value=5.3e-28  Score=243.65  Aligned_cols=189  Identities=23%  Similarity=0.248  Sum_probs=169.5

Q ss_pred             cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911           13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI   92 (724)
Q Consensus        13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL   92 (724)
                      .+.+.+++..+.+|.||||+|+..|++++|++|++ .|++++..             +..|.||||+|+..|+.+++++|
T Consensus        31 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~L   96 (237)
T 3b7b_A           31 VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPK-------------DAEGSTCLHLAAKKGHYEVVQYL   96 (237)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCC-------------CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHH
Confidence            44577888999999999999999999999999999 78888876             57899999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911           93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN  172 (724)
Q Consensus        93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga  172 (724)
                      ++.+.++++.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++    .|+
T Consensus        97 l~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~  168 (237)
T 3b7b_A           97 LSNGQMDVNCQ-DDGGWTPMIWATEYKH---VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA----AKC  168 (237)
T ss_dssp             HTTTCCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT----TTC
T ss_pred             HhCCCCCcccC-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH----cCC
Confidence            99933899998 9999999999999999   999999999999999999999999999999999888876665    342


Q ss_pred             CchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCC
Q 004911          173 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREY  238 (724)
Q Consensus       173 ~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~  238 (724)
                                     +++..|..|.||||+|+..|+.+++++|    ++.+.++..|.||||+|+..++.
T Consensus       169 ---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          169 ---------------DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             ---------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred             ---------------CCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHH
Confidence                           4567789999999999999999996655    46667889999999999998865

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=7.8e-29  Score=248.17  Aligned_cols=210  Identities=18%  Similarity=0.157  Sum_probs=181.9

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA   98 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA   98 (724)
                      ++..|..+.|+|+.|+..|++++|++|++ .|.+++..             +..|.||||+|+..|+.++|++|+++ |+
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~   66 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVE-AGYDVRQP-------------DKENVTLLHWAAINNRIDLVKYYISK-GA   66 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHH-cCCCcCCC-------------CCCCCCHHHHHHHhCCHHHHHHHHHc-CC
Confidence            45567889999999999999999999999 78888876             57899999999999999999999999 99


Q ss_pred             CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhh
Q 004911           99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVA  178 (724)
Q Consensus        99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~a  178 (724)
                      +++...+..|.||||+|+..|+   .+++++|+++|++++..|..|.||||+|+..|+.++++.|++.    ++      
T Consensus        67 ~~~~~~~~~~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~----~~------  133 (240)
T 3eu9_A           67 IVDQLGGDLNSTPLHWATRQGH---LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK----GQ------  133 (240)
T ss_dssp             CTTCCBTTTTBCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TC------
T ss_pred             cchhhcCCcCCChhHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc----CC------
Confidence            9987756679999999999999   9999999999999999999999999999999999988877763    32      


Q ss_pred             cccccccccccCCCCCCCCChhchhHhcCC-Cchhhh----hcCCCcccc-CCCCccccccccCCCCCCCCCCccccccc
Q 004911          179 SGAEHNLTVSIGSSNSDYSSPLLTASASGS-PPSPSR----LVSSPMALK-FNDVSFGTGAEKREYPIDPSLPDIKNSIY  252 (724)
Q Consensus       179 a~~~~~l~~~in~~d~~G~TPLh~Aa~~G~-~eiVe~----Lad~~a~~~-~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~  252 (724)
                               +++..+..|.||||+|+..++ .++++.    +++.+..+. .|.||||+|+..++.++++.|++.|++++
T Consensus       134 ---------~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  204 (240)
T 3eu9_A          134 ---------DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD  204 (240)
T ss_dssp             ---------CTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             ---------CccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                     455678889999999997776 566444    445566665 78899999999999999999999999999


Q ss_pred             cccccccccceee
Q 004911          253 ATDEFRMFSFKIR  265 (724)
Q Consensus       253 ~~D~~g~~~fkV~  265 (724)
                      ..|..+.++++++
T Consensus       205 ~~~~~g~t~l~~A  217 (240)
T 3eu9_A          205 AQNIKGESALDLA  217 (240)
T ss_dssp             CBCTTSCBHHHHH
T ss_pred             CcCCCCCCHHHHH
Confidence            9999988888876

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=7.7e-28  Score=240.63  Aligned_cols=182  Identities=16%  Similarity=0.137  Sum_probs=159.7

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCC--CCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDP--SSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS   96 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~g--adIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~   96 (724)
                      .+..+.+|.||||+|+..|+.++|++|++ .+  .+++..            .+..|+||||+|+..|+.+++++|+++ 
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~-   94 (228)
T 2dzn_A           29 LLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDY------------PDDSGWTPFHIACSVGNLEVVKSLYDR-   94 (228)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TCTTCCGGGC------------CCTTSCCHHHHHHHHCCHHHHHHHHSS-
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccc------------CCCCCCCHHHHHHHcCCHHHHHHHHhC-
Confidence            34478899999999999999999999999 67  444431            257899999999999999999999999 


Q ss_pred             C--CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCc
Q 004911           97 S--ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSS  174 (724)
Q Consensus        97 G--ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~  174 (724)
                      |  ++++.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++    .|.  
T Consensus        95 g~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~--  164 (228)
T 2dzn_A           95 PLKPDLNKI-TNQGVTCLHLAVGKKW---FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG----LGK--  164 (228)
T ss_dssp             SSCCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT----TTC--
T ss_pred             CCCcccccC-CcCCCCHHHHHHHcCC---HhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh----cCc--
Confidence            7  899998 9999999999999999   999999999999999999999999999999999988887665    331  


Q ss_pred             hhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhh-----hcCCCccccCCCCccccccccC
Q 004911          175 VVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR-----LVSSPMALKFNDVSFGTGAEKR  236 (724)
Q Consensus       175 ~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~-----Lad~~a~~~~g~TpLh~Aa~~g  236 (724)
                                  .+++..|..|.||||+|+..|+.+++++     +++.+..+..|.||+++|...+
T Consensus       165 ------------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          165 ------------SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             ------------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred             ------------ccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence                        1567789999999999999999998554     5577889999999999997653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.95  E-value=6.1e-29  Score=270.65  Aligned_cols=203  Identities=14%  Similarity=0.128  Sum_probs=179.8

Q ss_pred             ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911           14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL   93 (724)
Q Consensus        14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL   93 (724)
                      +.+++++..|.+|.||||+|+..|+.++|++||+ .|++++..             +..|.||||+||..|+.++|++||
T Consensus       154 ~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll  219 (373)
T 2fo1_E          154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIY-------------NKSERSALHQAAANRDFGMMVYML  219 (373)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTCCCHHHHHHHTTCHHHHHHHT
T ss_pred             hcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHH-CCCCCccc-------------CCCCCCHHHHHHHCCCHHHHHHHH
Confidence            5688899999999999999999999999999999 89999876             588999999999999999999999


Q ss_pred             hcCC---CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCC--------CCCCCCcHHHHHhcCCCHHHHHH
Q 004911           94 LHSS---ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC--------VDANGHHPIDVIVLPPKLDSMRA  162 (724)
Q Consensus        94 e~~G---ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~--------~D~~G~TPLhlAa~~G~~eivk~  162 (724)
                      ++ +   ++++.. +..|.||||+|+..+.....+++++|+++|++++.        .|..|.||||+|+..|+.++++.
T Consensus       220 ~~-~~~~~~~~~~-d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  297 (373)
T 2fo1_E          220 NS-TKLKGDIEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY  297 (373)
T ss_dssp             TS-HHHHHTTSCC-CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHH
T ss_pred             hc-CccccChhhc-CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHH
Confidence            98 6   899998 99999999999999832229999999999999986        67799999999999999999998


Q ss_pred             HHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCC
Q 004911          163 ILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREY  238 (724)
Q Consensus       163 LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~  238 (724)
                      |++.   .+               .+++..|..|.||||+|+..|+.++|++|    ++.+..+..|.|||++|+..|+.
T Consensus       298 Ll~~---~~---------------~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~  359 (373)
T 2fo1_E          298 LVGE---KG---------------SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH  359 (373)
T ss_dssp             HHHH---SC---------------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCH
T ss_pred             HHHh---cC---------------CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCH
Confidence            8874   11               15677899999999999999999996665    46678889999999999999999


Q ss_pred             CCCCCCCccccc
Q 004911          239 PIDPSLPDIKNS  250 (724)
Q Consensus       239 ~i~~~L~d~ga~  250 (724)
                      +++..|++.+++
T Consensus       360 ~iv~~Ll~~~a~  371 (373)
T 2fo1_E          360 NIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHHHTTC--
T ss_pred             HHHHHHHhcCcc
Confidence            999988877654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=2.5e-28  Score=251.26  Aligned_cols=181  Identities=16%  Similarity=0.142  Sum_probs=149.0

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA   98 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA   98 (724)
                      ++..+..|.||||+||..|++++|++||+ .|++++..             +..|+||||+|+..|+.++|++||++ |+
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~  102 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVA-------------ERGGHTALHLACRVRAHTCACVLLQP-RP  102 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCC-------------CTTSCCHHHHHTTTTCHHHHHHHSSS-CC
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCcchhHhhhcc-CC
Confidence            77889999999999999999999999999 89999876             58899999999999999999999997 65


Q ss_pred             C-----------------------------------------------cccccCCCCCcHHHHHHhCCCCCHHHHHHHHH
Q 004911           99 D-----------------------------------------------VNVSCGSDRTTALHCAASGGSANVVDVVRLLL  131 (724)
Q Consensus        99 D-----------------------------------------------VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL  131 (724)
                      +                                               ++.. +..|.||||+|+..|+   .++|++||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll  178 (282)
T 1oy3_D          103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKD---AEMVRLLR  178 (282)
T ss_dssp             SSCCCC-----------------------------------CCCGGGGTTCC-CTTSCCHHHHHHHTTC---HHHHHHHH
T ss_pred             CCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc-CCCCcCHHHHHHHcCC---HHHHHHHH
Confidence            4                                               6777 8899999999999999   99999999


Q ss_pred             HCCCCCCCCCCC-CCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCc
Q 004911          132 SAGADPDCVDAN-GHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPP  210 (724)
Q Consensus       132 e~GAd~n~~D~~-G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~e  210 (724)
                      ++|++++..+.. |+||||+|+..|+.++++.|++.    |+               +++.+|..|.||||+|+..|+.+
T Consensus       179 ~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~----ga---------------d~~~~d~~g~tpL~~A~~~~~~~  239 (282)
T 1oy3_D          179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA----GA---------------DPTARMYGGRTPLGSALLRPNPI  239 (282)
T ss_dssp             HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT----TC---------------CTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             HcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc----CC---------------CCcccccCCCCHHHHHHHcCCcH
Confidence            999999999864 99999999999999988877763    43               56678999999999999999999


Q ss_pred             hhh----hhcCCCccccCCCCccccccccCC
Q 004911          211 SPS----RLVSSPMALKFNDVSFGTGAEKRE  237 (724)
Q Consensus       211 iVe----~Lad~~a~~~~g~TpLh~Aa~~g~  237 (724)
                      +++    ++++.+.++..|.|||++|.....
T Consensus       240 ~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          240 LARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHHHTTCCCCCCC---------------
T ss_pred             HHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence            855    456777889999999999876653

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=4.1e-28  Score=244.03  Aligned_cols=184  Identities=18%  Similarity=0.191  Sum_probs=159.5

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL   94 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe   94 (724)
                      .+.+++..|.+|.||||+|+..|+.++|++||+ .+.++...        .....+.+|+||||+||..|+.++|++||+
T Consensus        26 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   96 (232)
T 2rfa_A           26 EGCEVHQRGAMGETALHIAALYDNLEAAMVLME-AAPELVFE--------PMTSELYEGQTALHIAVINQNVNLVRALLA   96 (232)
T ss_dssp             TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGC--------CCCSTTTTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCchhccc--------cccccCCCCcCHHHHHHHcCCHHHHHHHHh
Confidence            377889999999999999999999999999999 56654321        112236789999999999999999999999


Q ss_pred             cCCCCcccccCC-------------CCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHH
Q 004911           95 HSSADVNVSCGS-------------DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMR  161 (724)
Q Consensus        95 ~~GADVN~~~d~-------------~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk  161 (724)
                      + |++++.. +.             .|.||||+|+..|+   .++|++||++|++++.+|..|+||||+|+..|+.++++
T Consensus        97 ~-g~~~~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~  171 (232)
T 2rfa_A           97 R-GASVSAR-ATGSVFHYRPHNLIYYGEHPLSFAACVGS---EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFAC  171 (232)
T ss_dssp             T-TCCTTCC-CCSGGGSCCTTCSCCCCSSHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHH
T ss_pred             C-CCCCCcc-cCCcceeecccccccCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHH
Confidence            9 9999987 54             79999999999999   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCcc
Q 004911          162 AILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMA  221 (724)
Q Consensus       162 ~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~  221 (724)
                      .+++.|++.|++..         .....+..|..|.||||+|+..|+.+++++|++.+..
T Consensus       172 ~i~~~Ll~~g~~~~---------~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          172 QMYNLLLSYDGGDH---------LKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             HHHHHHHHTTCSCS---------SCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCchh---------hhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            99999998885321         1112257789999999999999999999999877643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=1.5e-28  Score=257.62  Aligned_cols=197  Identities=21%  Similarity=0.244  Sum_probs=169.7

Q ss_pred             cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911           13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI   92 (724)
Q Consensus        13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL   92 (724)
                      .+.+.+++..|.+|.||||+|+..|+.++|++|++ .|++++..             +..|+||||+|+..|+.++|++|
T Consensus        79 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~L  144 (285)
T 3d9h_A           79 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGV-------------TADWHTPLFNACVSGSWDCVNLL  144 (285)
T ss_dssp             HHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCC-------------CTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCHHHHHHHH
Confidence            34577889999999999999999999999999999 78998876             58999999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911           93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN  172 (724)
Q Consensus        93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga  172 (724)
                      |++ |++++..  .+|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.    |+
T Consensus       145 l~~-g~~~~~~--~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----ga  214 (285)
T 3d9h_A          145 LQH-GASVQPE--SDLASPIHEAARRGH---VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES----GA  214 (285)
T ss_dssp             HHT-TCCSSCS--CTTSCHHHHHHHHTC---HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT----TC
T ss_pred             HHC-CCCCCCC--CCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC----CC
Confidence            999 9999875  569999999999999   9999999999999999999999999999999999999887763    32


Q ss_pred             CchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCcc-
Q 004911          173 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDI-  247 (724)
Q Consensus       173 ~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~-  247 (724)
                                     +++ .+..|.||||+|+..|+.+++++|    ++.+.++..|.|||++|+.  +.+++..|++. 
T Consensus       215 ---------------~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~~  276 (285)
T 3d9h_A          215 ---------------DVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLERE  276 (285)
T ss_dssp             ---------------CTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSHHHHHHHHHC
T ss_pred             ---------------CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccHHHHHHHHhh
Confidence                           233 378899999999999999995555    5677889999999999993  45666666555 


Q ss_pred             cccc
Q 004911          248 KNSI  251 (724)
Q Consensus       248 ga~i  251 (724)
                      ++++
T Consensus       277 ~a~l  280 (285)
T 3d9h_A          277 GASL  280 (285)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            4433

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=3.2e-29  Score=259.32  Aligned_cols=208  Identities=15%  Similarity=0.155  Sum_probs=164.7

Q ss_pred             CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhc---CCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHHH
Q 004911           17 NNSTAETEDSFTSMLELASNNDVEGFKRMLER---DPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVLK   90 (724)
Q Consensus        17 ~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~---~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evVk   90 (724)
                      +..+..|..|.||||+||..|++++|+.||+.   .+.+++...         ...+..|+||||+||.+   |+.++|+
T Consensus         4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---------~~~~~~g~tpL~~A~~~~~~g~~~~v~   74 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE---------FKDPETGKTCLLKAMLNLHNGQNDTIA   74 (273)
T ss_dssp             -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG---------GSCTTTCCCHHHHHHHSCBTTBCHHHH
T ss_pred             ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc---------cccCcCCCCHHHHHHHHHhcCChHHHH
Confidence            34556788999999999999999999999973   566665321         11257899999999987   9999999


Q ss_pred             HHHhcCCCC-------ccc----ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCC--------------CCC
Q 004911           91 LILLHSSAD-------VNV----SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDA--------------NGH  145 (724)
Q Consensus        91 lLLe~~GAD-------VN~----~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~--------------~G~  145 (724)
                      +||++ |++       +|.    . +..|+||||+|+..|+   .++|++||++|++++.+|.              .|.
T Consensus        75 ~Ll~~-ga~~~~~~~~i~~~~~~~-d~~g~tpL~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~  149 (273)
T 2pnn_A           75 LLLDV-ARKTDSLKQFVNASYTDS-YYKGQTALHIAIERRN---MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE  149 (273)
T ss_dssp             HHHHH-HHHTTCHHHHHTCCCCST-TTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCB
T ss_pred             HHHHh-hccccchhHHhhcccccc-cCCCCCHHHHHHHcCC---HHHHHHHHHCCCCcCccccccccccccccccccCCC
Confidence            99999 776       333    3 6689999999999999   9999999999999999997              799


Q ss_pred             cHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCC---------Cchhhhh-
Q 004911          146 HPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGS---------PPSPSRL-  215 (724)
Q Consensus       146 TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~---------~eiVe~L-  215 (724)
                      ||||+|+..|+.++++.|++... .|+               +++.+|..|+||||+|+..|+         .++++.| 
T Consensus       150 tpL~~A~~~g~~~~v~~Ll~~~~-~ga---------------d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll  213 (273)
T 2pnn_A          150 LPLSLAACTNQLAIVKFLLQNSW-QPA---------------DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL  213 (273)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHCSS-CCC---------------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhccc-CCC---------------CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHH
Confidence            99999999999998887766100 332               567789999999999999988         4655544 


Q ss_pred             ---cCCC-------ccccCCCCccccccccCCCCCCCCCCcccc-ccccc
Q 004911          216 ---VSSP-------MALKFNDVSFGTGAEKREYPIDPSLPDIKN-SIYAT  254 (724)
Q Consensus       216 ---ad~~-------a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga-~i~~~  254 (724)
                         ++.+       ..+..|.||||+|+..|+.++++.|++.|+ +....
T Consensus       214 ~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~  263 (273)
T 2pnn_A          214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECR  263 (273)
T ss_dssp             HHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-----
T ss_pred             HhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhh
Confidence               4554       478899999999999999999999999988 44333

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=3.8e-29  Score=256.04  Aligned_cols=197  Identities=18%  Similarity=0.130  Sum_probs=164.5

Q ss_pred             CchHHHHHHHcCCHHHH----HHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHHHHHHhcCCC
Q 004911           26 SFTSMLELASNNDVEGF----KRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVLKLILLHSSA   98 (724)
Q Consensus        26 g~TpLh~AA~~G~le~V----k~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evVklLLe~~GA   98 (724)
                      |.||||.||..|++++|    ++|++ .|++++...         ...|.+|+||||+||..   |+.++|++||+. |+
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~---------~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~   70 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRW-NSKYLTDSA---------YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DK   70 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGG---------GSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHH-cCCCccccc---------ccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CC
Confidence            78999999999999854    55555 788888711         01268999999999999   999999999999 88


Q ss_pred             Cccccc----------CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCC-------------CCcHHHHHhcCC
Q 004911           99 DVNVSC----------GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDAN-------------GHHPIDVIVLPP  155 (724)
Q Consensus        99 DVN~~~----------d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~-------------G~TPLhlAa~~G  155 (724)
                      +++...          |..|.||||+|+..|+   .++|++||++|++++.+|..             |.||||+|+..|
T Consensus        71 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~  147 (256)
T 2etb_A           71 DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS---LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK  147 (256)
T ss_dssp             HTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTT
T ss_pred             cccchhhhcccccccccccCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcC
Confidence            877431          3679999999999999   99999999999999999986             999999999999


Q ss_pred             CHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHh--cCCCc-------hhhhh----cCC----
Q 004911          156 KLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASA--SGSPP-------SPSRL----VSS----  218 (724)
Q Consensus       156 ~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~--~G~~e-------iVe~L----ad~----  218 (724)
                      +.++++.|++.. ..|+               +++..|..|+||||+|+.  .++.+       +++.|    ++.    
T Consensus       148 ~~~~v~~Ll~~~-~~ga---------------~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~  211 (256)
T 2etb_A          148 QWDVVTYLLENP-HQPA---------------SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV  211 (256)
T ss_dssp             CHHHHHHHHHCS-SCCC---------------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             CHHHHHHHHhcc-ccCC---------------CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccc
Confidence            998888776610 0332               567889999999999999  77776       65554    455    


Q ss_pred             ---CccccCCCCccccccccCCCCCCCCCCccccccc
Q 004911          219 ---PMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIY  252 (724)
Q Consensus       219 ---~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~  252 (724)
                         +..+..|.||||+|+..|+.++++.|++.|....
T Consensus       212 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          212 QLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence               7889999999999999999999999988876543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=5.8e-28  Score=241.84  Aligned_cols=203  Identities=19%  Similarity=0.239  Sum_probs=174.5

Q ss_pred             ccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHH
Q 004911           12 TEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKL   91 (724)
Q Consensus        12 ~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVkl   91 (724)
                      ..+.+.+++..+..|.||||+|+..|++++|++|++ .+.+++...            +..|.||||+|+..|+.++|++
T Consensus        28 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~------------~~~~~t~L~~A~~~~~~~~v~~   94 (240)
T 3eu9_A           28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLG------------GDLNSTPLHWATRQGHLSMVVQ   94 (240)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCB------------TTTTBCHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH-cCCcchhhc------------CCcCCChhHHHHHcCCHHHHHH
Confidence            344677888999999999999999999999999999 777777553            4568999999999999999999


Q ss_pred             HHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCC-HHHHHHHHHHHHcC
Q 004911           92 ILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK-LDSMRAILEEVFGS  170 (724)
Q Consensus        92 LLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~-~eivk~LLe~Ll~~  170 (724)
                      |++. |++++.. +..|.||||+|+..|+   .+++++|+++|++++..|..|.||||+|+..++ .++++.|++    .
T Consensus        95 Ll~~-g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~----~  165 (240)
T 3eu9_A           95 LMKY-GADPSLI-DGEGCSCIHLAAQFGH---TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT----F  165 (240)
T ss_dssp             HHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH----T
T ss_pred             HHHc-CCCCccc-CCCCCCHHHHHHHcCH---HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh----c
Confidence            9999 9999998 9999999999999999   999999999999999999999999999996665 666665555    3


Q ss_pred             CCCchhhhcccccccccccCCCCC-CCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCC
Q 004911          171 KNSSVVVASGAEHNLTVSIGSSNS-DYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLP  245 (724)
Q Consensus       171 ga~~~~~aa~~~~~l~~~in~~d~-~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~  245 (724)
                      ++               +++..+. .|.||||+|+..|+.++++.|    ++.+..+..|.|||++|+..++.++++.|+
T Consensus       166 ~~---------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~  230 (240)
T 3eu9_A          166 NV---------------SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ  230 (240)
T ss_dssp             TC---------------CTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             CC---------------CcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            32               3445565 899999999999999995555    567788899999999999999999999888


Q ss_pred             cccccc
Q 004911          246 DIKNSI  251 (724)
Q Consensus       246 d~ga~i  251 (724)
                      +.+...
T Consensus       231 ~~~~~~  236 (240)
T 3eu9_A          231 EARQAK  236 (240)
T ss_dssp             HHC---
T ss_pred             Hhhhcc
Confidence            776543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=4.3e-27  Score=237.84  Aligned_cols=181  Identities=18%  Similarity=0.174  Sum_probs=157.5

Q ss_pred             CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911           17 NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS   96 (724)
Q Consensus        17 ~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~   96 (724)
                      .+++..+..|.||||+|+..|+.++|++||+ .|++++..             +..|+||||+|+..|+.++|++|++. 
T Consensus        36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-  100 (236)
T 1ikn_D           36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELR-------------DFRGNTPLHLACEQGCLASVGVLTQS-  100 (236)
T ss_dssp             CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHS-
T ss_pred             HHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-
Confidence            3688999999999999999999999999999 88998876             58999999999999999999999998 


Q ss_pred             CCC------cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCC-CCCcHHHHHhcCCCHHHHHHHHHHHHc
Q 004911           97 SAD------VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDA-NGHHPIDVIVLPPKLDSMRAILEEVFG  169 (724)
Q Consensus        97 GAD------VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~-~G~TPLhlAa~~G~~eivk~LLe~Ll~  169 (724)
                      |++      ++.. +..|.||||+|+..|+   .++|++||++|++++.+|. .|+||||+|+..|+.++++.|++    
T Consensus       101 ~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~----  172 (236)
T 1ikn_D          101 CTTPHLHSILKAT-NYNGHTCLHLASIHGY---LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK----  172 (236)
T ss_dssp             TTTTSSSCGGGCC-CTTCCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT----
T ss_pred             ccchhHHHHhhcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----
Confidence            765      5666 8899999999999999   9999999999999999998 99999999999999888887665    


Q ss_pred             CCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc------cccCCCCcccccccc
Q 004911          170 SKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM------ALKFNDVSFGTGAEK  235 (724)
Q Consensus       170 ~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a------~~~~g~TpLh~Aa~~  235 (724)
                      .|+               +++..|..|.||||+|+..|+.+++++|+..++      .+..+.|+.+.+...
T Consensus       173 ~ga---------------~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          173 CGA---------------DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             TTC---------------CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             cCC---------------CCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            443               566778999999999999999999988887774      344566666655443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.94  E-value=1.9e-27  Score=254.51  Aligned_cols=178  Identities=16%  Similarity=0.057  Sum_probs=132.9

Q ss_pred             ccCCCCCC-CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCC---HHHH
Q 004911           14 DMNNNSTA-ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGS---VDVL   89 (724)
Q Consensus        14 ~m~~di~~-~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~---~evV   89 (724)
                      +.+++++. .|.+|.||||+||..|++++|++||+ .|++++..             +.+|+||||+||.+|+   .+++
T Consensus       118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~-------------d~~g~TpLh~A~~~g~~~~~~~~  183 (327)
T 1sw6_A          118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYG-------------DNMGESCLVKAVKSVNNYDSGTF  183 (327)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBC-------------CTTCCCHHHHHHHSSHHHHTTCH
T ss_pred             hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHhcccccHHHH
Confidence            45677888 78888899999999999999998888 78888876             5788899999988888   7888


Q ss_pred             HHHHhcCCCCcccccCCCCCcHHHHHHh----CCCCCHHHHHHHHHHC--------------------CCCCCCCCCCCC
Q 004911           90 KLILLHSSADVNVSCGSDRTTALHCAAS----GGSANVVDVVRLLLSA--------------------GADPDCVDANGH  145 (724)
Q Consensus        90 klLLe~~GADVN~~~d~~G~TPLH~Aa~----~G~~~~~eiVklLLe~--------------------GAd~n~~D~~G~  145 (724)
                      +.||+..+++++.. +..|+||||+|+.    .|+   .+++++||+.                    |++++.+|..|.
T Consensus       184 ~~ll~~~~~~~~~~-d~~g~tpLh~A~~~~~~~g~---~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~  259 (327)
T 1sw6_A          184 EALLDYLYPCLILE-DSMNRTILHHIIITSGMTGC---SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK  259 (327)
T ss_dssp             HHHHHHHGGGGGEE-CTTCCCHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred             HHHHHhhhccccCC-CCCCCCHHHHHHHHcccccc---HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCC
Confidence            88888734788888 8888899999888    788   8888888876                    888888888888


Q ss_pred             cHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhh----hcCCCcc
Q 004911          146 HPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMA  221 (724)
Q Consensus       146 TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~----Lad~~a~  221 (724)
                      ||||+|+.      ++.|++.                     +++.+|..|+||||+|+..|+.++|++    +++++++
T Consensus       260 t~L~~a~~------~~~Ll~~---------------------~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~  312 (327)
T 1sw6_A          260 DSILENLD------LKWIIAN---------------------MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA  312 (327)
T ss_dssp             CHHHHHCS------HHHHHHH---------------------TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred             ChhHHHHH------HHHHHHh---------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence            99988885      5555553                     356678888999999999998888554    4566778


Q ss_pred             ccCCCCccccccccC
Q 004911          222 LKFNDVSFGTGAEKR  236 (724)
Q Consensus       222 ~~~g~TpLh~Aa~~g  236 (724)
                      +..|.||||+|+..|
T Consensus       313 d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          313 NKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CTTSCCGGGGTCC--
T ss_pred             CCCCCCHHHHHHhcC
Confidence            888999999888764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=5.4e-28  Score=246.45  Aligned_cols=187  Identities=18%  Similarity=0.104  Sum_probs=162.4

Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 004911           20 TAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSAD   99 (724)
Q Consensus        20 ~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD   99 (724)
                      +..+.++.|+||.||..|++++|++||+ .|++++..             |..|+||||+||..|+.++|++||+. |++
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~   79 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQP-------------NEEGITALHNAICGANYSIVDFLITA-GAN   79 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCC
Confidence            4456778899999999999999999999 78888876             68999999999999999999999999 999


Q ss_pred             cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--hcCCCHHHHHHHHHHHHcCCCCchh
Q 004911          100 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPIDVI--VLPPKLDSMRAILEEVFGSKNSSVV  176 (724)
Q Consensus       100 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLhlA--a~~G~~eivk~LLe~Ll~~ga~~~~  176 (724)
                      +|.. |..|+||||+|+..|+   .++|++||++|++++.++ ..|+||||+|  +..|+.++++.|++...        
T Consensus        80 ~n~~-d~~g~tpLh~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga--------  147 (229)
T 2vge_A           80 VNSP-DSHGWTPLHCAASCND---TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ--------  147 (229)
T ss_dssp             TTCC-CTTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH--------
T ss_pred             CCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCC--------
Confidence            9999 9999999999999999   999999999999999987 6999999999  99999999999888643        


Q ss_pred             hhcccccccccccCCCCCCCCChhchhHhcCCCch-hhhhcC--CCccccCCCCccccccccCCCCCCCCC
Q 004911          177 VASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPS-PSRLVS--SPMALKFNDVSFGTGAEKREYPIDPSL  244 (724)
Q Consensus       177 ~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~ei-Ve~Lad--~~a~~~~g~TpLh~Aa~~g~~~i~~~L  244 (724)
                                 +++..|..|.|||+.++.....++ ++.+++  .+.++..|+||||+|+..|+.++++.+
T Consensus       148 -----------~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          148 -----------SMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             -----------HTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             -----------CcccccCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence                       344456778899986665554444 666666  556788899999999999998888653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=2.1e-27  Score=232.86  Aligned_cols=162  Identities=15%  Similarity=0.145  Sum_probs=149.1

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA   98 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA   98 (724)
                      ++..|.+|.||||+||..|+.++|++|++ .+.+++..             +..|+||||+|+..|+.++|++||++ |+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~   92 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVE-NFDKLEDK-------------DIEGSTALIWAVKNNRLGIAEKLLSK-GS   92 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHH-HHCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-TC
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHH-hccccccc-------------cccCccHHHHHHHcCCHHHHHHHHHC-CC
Confidence            56789999999999999999999999999 67888776             57899999999999999999999999 99


Q ss_pred             CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhh
Q 004911           99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVA  178 (724)
Q Consensus        99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~a  178 (724)
                      +++.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.    |+      
T Consensus        93 ~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga------  158 (192)
T 2rfm_A           93 NVNTK-DFSGKTPLMWSIIFGY---SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL----GA------  158 (192)
T ss_dssp             CTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TC------
T ss_pred             CCCCC-CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC----CC------
Confidence            99999 9999999999999999   9999999999999999999999999999999999888877763    43      


Q ss_pred             cccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCC
Q 004911          179 SGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS  218 (724)
Q Consensus       179 a~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~  218 (724)
                               +++..|..|.||||+|+..|+.+++++|++.
T Consensus       159 ---------~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          159 ---------DISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             ---------CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---------CCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence                     4567789999999999999999999988754

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=1.2e-26  Score=227.69  Aligned_cols=169  Identities=21%  Similarity=0.243  Sum_probs=152.0

Q ss_pred             ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911           14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL   93 (724)
Q Consensus        14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL   93 (724)
                      .-..+++..|.+|.||||+|+..|++++|++||+ .|++++..             +..|.||||+|+..|+.+++++||
T Consensus        27 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~l~~A~~~~~~~~~~~Ll   92 (201)
T 3hra_A           27 DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQ-------------NSISDSPYLYAGAQGRTEILAYML   92 (201)
T ss_dssp             CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3445788899999999999999999999999999 79999876             588999999999999999999999


Q ss_pred             hcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC-CCCCCCCCCCCcHHHHHhcCCC-----HHHHHHHHHHH
Q 004911           94 LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG-ADPDCVDANGHHPIDVIVLPPK-----LDSMRAILEEV  167 (724)
Q Consensus        94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G-Ad~n~~D~~G~TPLhlAa~~G~-----~eivk~LLe~L  167 (724)
                      +..+++++.. +..|.||||+|+..|+   .+++++||++| ++++.+|..|+||||+|+..++     .++++.|++  
T Consensus        93 ~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~--  166 (201)
T 3hra_A           93 KHATPDLNKH-NRYGGNALIPAAEKGH---IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME--  166 (201)
T ss_dssp             HHSCCCTTCC-CTTSCCSHHHHHHTTC---HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH--
T ss_pred             hccCcccccc-cCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH--
Confidence            7668899998 9999999999999999   99999999998 9999999999999999999887     666665555  


Q ss_pred             HcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911          168 FGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP  219 (724)
Q Consensus       168 l~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~  219 (724)
                        .|+               +++..|..|.||||+|+..|+.++++.|++.+
T Consensus       167 --~ga---------------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          167 --NGA---------------DQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             --TTC---------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             --CCC---------------CCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence              453               45677899999999999999999999988754

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=7.3e-27  Score=221.86  Aligned_cols=159  Identities=21%  Similarity=0.267  Sum_probs=144.1

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004911           24 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS  103 (724)
Q Consensus        24 ~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~  103 (724)
                      +...|+||.|+..|++++|++||+ .|.+++..             +..|+||||+|+. |+.++|++||++ |++++..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~   66 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQ-NNVNVNAQ-------------NGFGRTALQVMKL-GNPEIARRLLLR-GANPDLK   66 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCC-------------CTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCC
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHh-CCCCcccc-------------CccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCC
Confidence            356799999999999999999999 78888876             5889999999999 999999999999 9999999


Q ss_pred             cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccc
Q 004911          104 CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEH  183 (724)
Q Consensus       104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~  183 (724)
                       +..|.||||+|+..|+   .+++++|+++|++++.+|..|+||||+|+..|+.++++.|++.    |++          
T Consensus        67 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~----------  128 (162)
T 1ihb_A           67 -DRTGFAVIHDAARAGF---LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH----TAS----------  128 (162)
T ss_dssp             -CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----SCC----------
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc----cCC----------
Confidence             9999999999999999   9999999999999999999999999999999999999888775    221          


Q ss_pred             ccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc
Q 004911          184 NLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM  220 (724)
Q Consensus       184 ~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a  220 (724)
                          .++..|..|.||||+|+..|+.+++++|++.++
T Consensus       129 ----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A          129 ----NVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             ----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             ----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence                246778899999999999999999999988764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1.8e-26  Score=222.29  Aligned_cols=160  Identities=22%  Similarity=0.318  Sum_probs=144.7

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911           22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN  101 (724)
Q Consensus        22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN  101 (724)
                      ....+.|+|++||..|++++|++||+ .|.+++..             +..|.||||+||..|+.++|++||++ |++++
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~   74 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMA-NGADVNAE-------------DASGWTPLHLAAFNGHLEIVEVLLKN-GADVN   74 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTT
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence            34567899999999999999999999 78998876             58899999999999999999999999 99999


Q ss_pred             cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccc
Q 004911          102 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGA  181 (724)
Q Consensus       102 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~  181 (724)
                      .. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.    |+         
T Consensus        75 ~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~---------  137 (169)
T 2y1l_E           75 AV-DHAGMTPLRLAALFGH---LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN----GA---------  137 (169)
T ss_dssp             CC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TC---------
T ss_pred             cc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CC---------
Confidence            99 9999999999999999   9999999999999999999999999999999999988877763    42         


Q ss_pred             ccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911          182 EHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP  219 (724)
Q Consensus       182 ~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~  219 (724)
                            +++..|..|.||||+|+..|+.+++++|++.+
T Consensus       138 ------~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          138 ------DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             ------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             ------CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence                  45677899999999999999999999887653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.3e-26  Score=221.36  Aligned_cols=161  Identities=25%  Similarity=0.328  Sum_probs=143.4

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911           22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN  101 (724)
Q Consensus        22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN  101 (724)
                      .+.++.|+||.|+..|++++|+.|++..+.+++..             +..|+||||+||..|+.++|++||++ |++++
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~   69 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-------------EGRQSTPLHFAAGYNRVSVVEYLLQH-GADVH   69 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-------------TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTT
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-------------ccCCCCHHHHHHHcChHHHHHHHHhc-CCCCC
Confidence            46788999999999999999999999766666655             57899999999999999999999999 99999


Q ss_pred             cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccc
Q 004911          102 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGA  181 (724)
Q Consensus       102 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~  181 (724)
                      .. +..|+||||+|+..|+   .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++.    |+         
T Consensus        70 ~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga---------  132 (165)
T 3twr_A           70 AK-DKGGLVPLHNACSYGH---YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH----GA---------  132 (165)
T ss_dssp             CC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TC---------
T ss_pred             cc-CCCCCCHHHHHHHcCc---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc----CC---------
Confidence            99 9999999999999999   9999999999999999999999999999999999988877763    42         


Q ss_pred             ccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc
Q 004911          182 EHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM  220 (724)
Q Consensus       182 ~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a  220 (724)
                            +++..|..|.||||+|+. |+.+++++|...++
T Consensus       133 ------~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          133 ------DPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             ------CTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             ------CCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence                  456788999999999877 88899999887653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=6.3e-27  Score=243.99  Aligned_cols=183  Identities=17%  Similarity=0.251  Sum_probs=160.1

Q ss_pred             ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911           14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL   93 (724)
Q Consensus        14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL   93 (724)
                      +.+.+++..+.+|.||||+||..|++++|++||+ .|++++..             +..|+||||+|+..|+.++|++||
T Consensus        61 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~tpL~~A~~~g~~~~v~~Ll  126 (299)
T 1s70_B           61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQP-------------DNEGWIPLHAAASCGYLDIAEYLI  126 (299)
T ss_dssp             HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHHH
Confidence            4577889999999999999999999999999999 89999877             588999999999999999999999


Q ss_pred             hcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCC--------------------------CCCCCCCCc
Q 004911           94 LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA-GADP--------------------------DCVDANGHH  146 (724)
Q Consensus        94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~--------------------------n~~D~~G~T  146 (724)
                      ++ |++++.. +..|.||||+|+..++   .++++.|+.. |+++                          ...+..|.|
T Consensus       127 ~~-g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t  201 (299)
T 1s70_B          127 SQ-GAHVGAV-NSEGDTPLDIAEEEAM---EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT  201 (299)
T ss_dssp             HT-TCCTTCC-CTTSCCHHHHCCSHHH---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCC
T ss_pred             hC-CCCCCCc-CCCCCCHHHHHHhcch---HHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCC
Confidence            99 9999999 9999999999999998   8998877754 5443                          336678999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccc
Q 004911          147 PIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMAL  222 (724)
Q Consensus       147 PLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~  222 (724)
                      |||+|+..|+.++++.|++    .|+               +++..|..|.||||+|+..|+.++++.|    ++.++.+
T Consensus       202 ~L~~A~~~g~~~~v~~Ll~----~g~---------------d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d  262 (299)
T 1s70_B          202 ALHVAAAKGYTEVLKLLIQ----ARY---------------DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN  262 (299)
T ss_dssp             HHHHHHHHTCHHHHHHHHT----TTC---------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHCCcHHHHHHHHH----cCC---------------CCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcC
Confidence            9999999999988887665    343               5667889999999999999999985554    5677889


Q ss_pred             cCCCCccccccc
Q 004911          223 KFNDVSFGTGAE  234 (724)
Q Consensus       223 ~~g~TpLh~Aa~  234 (724)
                      ..|.|||++|.+
T Consensus       263 ~~g~t~l~~A~~  274 (299)
T 1s70_B          263 KVGQTAFDVADE  274 (299)
T ss_dssp             TTSCCTTTSCCS
T ss_pred             CCCCCHHHHHHH
Confidence            999999999965

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=1.8e-26  Score=221.87  Aligned_cols=157  Identities=24%  Similarity=0.349  Sum_probs=140.7

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004911           26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG  105 (724)
Q Consensus        26 g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d  105 (724)
                      +.||||.||..|++++|+.||+..+..++..             +..|+||||+||..|+.++|++||++ |++++.. +
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~   66 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-------------DERGFTPLIWASAFGEIETVRFLLEW-GADPHIL-A   66 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCC-C
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhh-c
Confidence            4689999999999999999999544446665             58899999999999999999999999 9999999 9


Q ss_pred             CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccc
Q 004911          106 SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNL  185 (724)
Q Consensus       106 ~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l  185 (724)
                      ..|.||||+|+..|+   .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++.    |+             
T Consensus        67 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga-------------  126 (172)
T 3v30_A           67 KERESALSLASTGGY---TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR----GA-------------  126 (172)
T ss_dssp             TTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TC-------------
T ss_pred             ccCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CC-------------
Confidence            999999999999999   9999999999999999999999999999999999988877763    42             


Q ss_pred             ccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911          186 TVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP  219 (724)
Q Consensus       186 ~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~  219 (724)
                        +++..|..|.||||+|+..|+.++++.|++.+
T Consensus       127 --~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A          127 --DLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             --CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             --CccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence              45677889999999999999999987777654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=4.4e-28  Score=248.37  Aligned_cols=199  Identities=15%  Similarity=0.095  Sum_probs=163.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHh---cCCCCccccccccccccCCcccCCCCChHHHHHH---HcCCHHHHHHHHhcC
Q 004911           23 TEDSFTSMLELASNNDVEGFKRMLE---RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAA---TYGSVDVLKLILLHS   96 (724)
Q Consensus        23 d~~g~TpLh~AA~~G~le~Vk~LLe---~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA---~~G~~evVklLLe~~   96 (724)
                      +.-+.|+||.||..|+++.|+.||+   ..+.+++...         ...+..|+||||+|+   ..|+.++|++||+. 
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~---------~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-   71 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE---------FREPSTGKTCLPKALLNLSAGRNDTIPILLDI-   71 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG---------GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH-
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh---------hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh-
Confidence            3467899999999999997666665   3677877652         112467999999999   67999999999998 


Q ss_pred             CCC-----------cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC--------------CCCCcHHHHH
Q 004911           97 SAD-----------VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD--------------ANGHHPIDVI  151 (724)
Q Consensus        97 GAD-----------VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D--------------~~G~TPLhlA  151 (724)
                      |++           ++.. |..|+||||+|+..|+   .++|++||++|++++.+|              ..|+||||+|
T Consensus        72 g~~~~~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A  147 (260)
T 3jxi_A           72 AEKTGNMREFINSPFRDV-YYRGQTALHIAIERRC---KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA  147 (260)
T ss_dssp             HHHTTCHHHHHTCCBCCS-SEESBCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHH
T ss_pred             cccccchHhhhccccccc-ccCCCCHHHHHHHcCC---HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHH
Confidence            754           3333 5589999999999999   999999999999999999              6899999999


Q ss_pred             hcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCC---------Cchhhhhc----CC
Q 004911          152 VLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGS---------PPSPSRLV----SS  218 (724)
Q Consensus       152 a~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~---------~eiVe~La----d~  218 (724)
                      +..|+.++++.|++.. ..|+               +++..|..|+||||+|+..++         .++++.|+    +.
T Consensus       148 ~~~g~~~~v~~Ll~~~-~~ga---------------~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          148 ACTNQPHIVHYLTENG-HKQA---------------DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             HHTTCHHHHHHHHHCS-SCCC---------------CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhcc-ccCC---------------CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            9999998888776610 0332               567889999999999998887         46655554    44


Q ss_pred             -------CccccCCCCccccccccCCCCCCCCCCcccccc
Q 004911          219 -------PMALKFNDVSFGTGAEKREYPIDPSLPDIKNSI  251 (724)
Q Consensus       219 -------~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i  251 (724)
                             +..+..|.||||+|+..|+.++++.|++.|...
T Consensus       212 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          212 FPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             CTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence                   568899999999999999999999998887654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=1.8e-26  Score=220.87  Aligned_cols=157  Identities=26%  Similarity=0.316  Sum_probs=144.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 004911           25 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC  104 (724)
Q Consensus        25 ~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~  104 (724)
                      +|.||||.||..|++++|+.|++ .+.+++..             +..|+||||+|+..|+.++|++||++ |++++.. 
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-   65 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIE-QENVINHT-------------DEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLL-   65 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHH-HSSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-
T ss_pred             CCcchHHHHHHCCCHHHHHHHHH-cCCCcCCC-------------CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCc-
Confidence            57899999999999999999999 57888876             58999999999999999999999999 9999999 


Q ss_pred             CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccc
Q 004911          105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHN  184 (724)
Q Consensus       105 d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~  184 (724)
                      +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++    .|+            
T Consensus        66 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~------------  126 (167)
T 3v31_A           66 GKGRESALSLACSKGY---TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE----SGA------------  126 (167)
T ss_dssp             CTTCCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC------------
T ss_pred             CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC------------
Confidence            9999999999999999   999999999999999999999999999999999998887776    343            


Q ss_pred             cccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911          185 LTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP  219 (724)
Q Consensus       185 l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~  219 (724)
                         +++..|..|.||||+|+..|+.++++++++..
T Consensus       127 ---~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A          127 ---DPTIETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             ---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ---CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence               45667889999999999999999988887654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.94  E-value=5e-26  Score=227.05  Aligned_cols=173  Identities=18%  Similarity=0.199  Sum_probs=157.1

Q ss_pred             cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911           13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI   92 (724)
Q Consensus        13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL   92 (724)
                      .+.+.+++..+..|.||||+|+..|+.++|++|++..+.+++..             +..|.||||+|+..|+.+++++|
T Consensus        45 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~L  111 (223)
T 2f8y_A           45 LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR-------------MHDGTTPLILAARLAVEGMLEDL  111 (223)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC-------------CCCCCcHHHHHHHhCcHHHHHHH
Confidence            44578889999999999999999999999999999655577766             58899999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911           93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN  172 (724)
Q Consensus        93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga  172 (724)
                      +++ |++++.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.    |+
T Consensus       112 l~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga  182 (223)
T 2f8y_A          112 INS-HADVNAV-DDLGKSALHWAAAVNN---VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH----FA  182 (223)
T ss_dssp             HHT-TCCTTCB-CTTSCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TC
T ss_pred             HHc-CCCCcCc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc----CC
Confidence            998 9999999 9999999999999999   9999999999999999999999999999999999988877763    42


Q ss_pred             CchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccc
Q 004911          173 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMAL  222 (724)
Q Consensus       173 ~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~  222 (724)
                                     +++..|..|.||||+|+..++.+++++|++.++..
T Consensus       183 ---------------~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          183 ---------------NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             ---------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             ---------------CCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence                           45667889999999999999999999999887643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=1.4e-26  Score=237.01  Aligned_cols=188  Identities=17%  Similarity=0.131  Sum_probs=153.2

Q ss_pred             ccCCCCCC----CCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCH
Q 004911           14 DMNNNSTA----ETEDSFTSMLELASN---NDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSV   86 (724)
Q Consensus        14 ~m~~di~~----~d~~g~TpLh~AA~~---G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~   86 (724)
                      ..+.+++.    .|.+|.||||+||..   |+.++|++||+ .|++++.......  ......|..|+||||+||..|+.
T Consensus        27 ~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~~~--~~~~~~d~~g~t~L~~A~~~g~~  103 (256)
T 2etb_A           27 WNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ-IDKDSGNPKPLVN--AQCTDEFYQGHSALHIAIEKRSL  103 (256)
T ss_dssp             HHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH-HHHHTTCSSCGGG--CCCCSTTTTTCCHHHHHHHTTCH
T ss_pred             HcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHh-cCCcccchhhhcc--cccccccccCCCHHHHHHHcCCH
Confidence            35777887    899999999999999   99999999999 5666553321111  11223357899999999999999


Q ss_pred             HHHHHHHhcCCCCcccccCCC-------------CCcHHHHHHhCCCCCHHHHHHHHHH---CCCCCCCCCCCCCcHHHH
Q 004911           87 DVLKLILLHSSADVNVSCGSD-------------RTTALHCAASGGSANVVDVVRLLLS---AGADPDCVDANGHHPIDV  150 (724)
Q Consensus        87 evVklLLe~~GADVN~~~d~~-------------G~TPLH~Aa~~G~~~~~eiVklLLe---~GAd~n~~D~~G~TPLhl  150 (724)
                      ++|++||++ |+++|.. +..             |.||||+|+..|+   .++|++||+   +|++++.+|..|+||||+
T Consensus       104 ~~v~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~  178 (256)
T 2etb_A          104 QCVKLLVEN-GADVHLR-ACGRFFQKHQGTCFYFGELPLSLAACTKQ---WDVVTYLLENPHQPASLEATDSLGNTVLHA  178 (256)
T ss_dssp             HHHHHHHHT-TCCTTCC-CCSGGGSCCSSSCCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHc-CCCCCcc-cccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCcCccCCCCCCHHHH
Confidence            999999999 9999998 665             9999999999999   999999999   999999999999999999


Q ss_pred             Hhc--CCCHH-------HHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCcc
Q 004911          151 IVL--PPKLD-------SMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMA  221 (724)
Q Consensus       151 Aa~--~G~~e-------ivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~  221 (724)
                      |+.  .++.+       +++.|++.+......            ...++..|..|.||||+|+..|+.++++.|++.+..
T Consensus       179 A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~------------~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          179 LVMIADNSPENSALVIHMYDGLLQMGARLCPT------------VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS  246 (256)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTT------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcccCCchhhHHHHHHHHHHHHcCCCcccc------------cccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence            998  88887       666666653322100            001267899999999999999999999999876643

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=3.7e-26  Score=222.90  Aligned_cols=135  Identities=32%  Similarity=0.430  Sum_probs=127.3

Q ss_pred             ccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHH
Q 004911           12 TEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKL   91 (724)
Q Consensus        12 ~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVkl   91 (724)
                      ..+.++|++..|.+|.||||+|+..++.++++.||+ .|++++..             +.+|+||||+||..|+.++|++
T Consensus        23 Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~-------------d~~g~TpLh~A~~~g~~~~v~~   88 (169)
T 4gpm_A           23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAK-------------DSDGRTPLHHAAENGHKEVVKL   88 (169)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhh-------------ccCCCCHHHHHHHcCCHHHHHH
Confidence            445688999999999999999999999999999999 89999887             6899999999999999999999


Q ss_pred             HHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 004911           92 ILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE  165 (724)
Q Consensus        92 LLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe  165 (724)
                      ||++ |+|+|.+ |.+|+||||+|+..|+   .++|++||++|+|++.+|.+|+||||+|+..|+.++++.|++
T Consensus        89 Ll~~-gadvn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  157 (169)
T 4gpm_A           89 LISK-GADVNAK-DSDGRTPLHHAAENGH---KEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK  157 (169)
T ss_dssp             HHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHC-cCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999 9999999 9999999999999999   999999999999999999999999999999999888775554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=2.7e-26  Score=216.90  Aligned_cols=153  Identities=24%  Similarity=0.314  Sum_probs=140.7

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004911           26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG  105 (724)
Q Consensus        26 g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d  105 (724)
                      +.|+||.||..|++++|+.||+..+.+++..             +..|+||||+ |..|+.++|++||++ |++++.. +
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~-~   65 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-------------NRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQ-D   65 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-------------CTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCC-C
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-------------CCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCc-C
Confidence            5699999999999999999999645577776             5889999999 999999999999999 9999999 9


Q ss_pred             CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccc
Q 004911          106 SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNL  185 (724)
Q Consensus       106 ~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l  185 (724)
                      ..|.||||+|+..|+   .+++++|+++|++++.+|..|+||||+|+..|+.++++.|++.     +             
T Consensus        66 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~-------------  124 (156)
T 1bd8_A           66 TSGTSPVHDAARTGF---LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-----S-------------  124 (156)
T ss_dssp             TTSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-----S-------------
T ss_pred             CCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-----c-------------
Confidence            999999999999999   9999999999999999999999999999999999999877762     1             


Q ss_pred             ccccCCCCCCCCChhchhHhcCCCchhhhhcC
Q 004911          186 TVSIGSSNSDYSSPLLTASASGSPPSPSRLVS  217 (724)
Q Consensus       186 ~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad  217 (724)
                        +++..|..|.||||+|+..|+.++++.|++
T Consensus       125 --~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          125 --DLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             --CTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             --CCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence              566778999999999999999999998875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=1.2e-26  Score=240.05  Aligned_cols=184  Identities=17%  Similarity=0.167  Sum_probs=146.0

Q ss_pred             CCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 004911           21 AETEDSFTSMLELASN---NDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS   97 (724)
Q Consensus        21 ~~d~~g~TpLh~AA~~---G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G   97 (724)
                      ..+.+|.||||+||..   |+.++|++||+ .|++++.......  ......+..|+||||+||..|+.++|++||++ |
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~-~ga~~~~~~~~i~--~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g  124 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLD-VARKTDSLKQFVN--ASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-G  124 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHH-HHHHTTCHHHHHT--CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHH-hhccccchhHHhh--cccccccCCCCCHHHHHHHcCCHHHHHHHHHC-C
Confidence            3588999999999987   99999999999 5554322110000  11122357899999999999999999999999 9


Q ss_pred             CCcccccCC--------------CCCcHHHHHHhCCCCCHHHHHHHHHH---CCCCCCCCCCCCCcHHHHHhcCCC----
Q 004911           98 ADVNVSCGS--------------DRTTALHCAASGGSANVVDVVRLLLS---AGADPDCVDANGHHPIDVIVLPPK----  156 (724)
Q Consensus        98 ADVN~~~d~--------------~G~TPLH~Aa~~G~~~~~eiVklLLe---~GAd~n~~D~~G~TPLhlAa~~G~----  156 (724)
                      ++++.. +.              .|.||||+|+..|+   .++|++||+   +|++++.+|..|+||||+|+..|+    
T Consensus       125 a~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~  200 (273)
T 2pnn_A          125 ADVQAA-ANGDFFKKTKGRPGFYFGELPLSLAACTNQ---LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD  200 (273)
T ss_dssp             CCTTCC-BCSGGGSSCSSSCCCCSCBSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred             CCcCcc-ccccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchh
Confidence            999998 65              79999999999999   999999999   999999999999999999999877    


Q ss_pred             -----HHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccC
Q 004911          157 -----LDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKF  224 (724)
Q Consensus       157 -----~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~  224 (724)
                           .++++.|++.+......            ...++..|..|.||||+|+..|+.+++++|++.++.+..
T Consensus       201 ~~~~~~~~v~~Ll~~ga~~n~~------------~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~  261 (273)
T 2pnn_A          201 NTKFVTSMYNEILILGAKLHPT------------LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPE  261 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHhhhhcccc------------cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCch
Confidence                 56666666553322210            002346789999999999999999999999988876654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=4e-26  Score=215.90  Aligned_cols=151  Identities=17%  Similarity=0.214  Sum_probs=137.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004911           26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG  105 (724)
Q Consensus        26 g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d  105 (724)
                      ..|+||.|+..|++++|++|++ .|.+++.              +..|.||||+||..|+.++|++||+. |++++.. +
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~--------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~   64 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMA-NGAPFTT--------------DWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDAR-T   64 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH-HTCCCCC--------------CTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC-C
T ss_pred             ccHHHHHHHHcCCHHHHHHHHH-cCCCCCc--------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-C
Confidence            4689999999999999999999 5666653              57899999999999999999999999 9999999 9


Q ss_pred             CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccc
Q 004911          106 SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNL  185 (724)
Q Consensus       106 ~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l  185 (724)
                      ..|.||||+|+..|+   .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++.    |+             
T Consensus        65 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga-------------  124 (153)
T 1awc_B           65 KVDRTPLHMAASEGH---ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY----GA-------------  124 (153)
T ss_dssp             TTCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TC-------------
T ss_pred             CCCCCHHHHHHHcCh---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CC-------------
Confidence            999999999999999   9999999999999999999999999999999999988877763    42             


Q ss_pred             ccccCCCCCCCCChhchhHhcCCCchhhhh
Q 004911          186 TVSIGSSNSDYSSPLLTASASGSPPSPSRL  215 (724)
Q Consensus       186 ~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L  215 (724)
                        +++..|..|.||||+|+..|+.+++++|
T Consensus       125 --~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          125 --DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             --CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             --CccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence              4567789999999999999999998765

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=4.3e-26  Score=221.31  Aligned_cols=161  Identities=19%  Similarity=0.228  Sum_probs=143.6

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004911           24 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS  103 (724)
Q Consensus        24 ~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~  103 (724)
                      .++.++||.||..|++++|+.||+..+.+++..             +..|+||||+||..|+.++|++||++ |++++..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~   68 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-------------DDHGFSPLHWACREGRSAVVEMLIMR-GARINVM   68 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCc
Confidence            467899999999999999999999778888876             58899999999999999999999999 9999999


Q ss_pred             cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccc
Q 004911          104 CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEH  183 (724)
Q Consensus       104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~  183 (724)
                       +..|.||||+|+..|+   .++|++||++|++++.+|..|.||||+|+..|+.++++.|++    .|+           
T Consensus        69 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga-----------  129 (179)
T 3f6q_A           69 -NRGDDTPLHLAASHGH---RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA----NGA-----------  129 (179)
T ss_dssp             -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC-----------
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH----CCC-----------
Confidence             9999999999999999   999999999999999999999999999999999988887776    343           


Q ss_pred             ccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCcc
Q 004911          184 NLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMA  221 (724)
Q Consensus       184 ~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~  221 (724)
                          +++..|..|.||||+|+..++.++++.++..++.
T Consensus       130 ----~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~  163 (179)
T 3f6q_A          130 ----LVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN  163 (179)
T ss_dssp             ----CSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             ----CcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence                4567789999999999999999998887766643

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=3.9e-26  Score=233.87  Aligned_cols=188  Identities=17%  Similarity=0.125  Sum_probs=147.1

Q ss_pred             cCCCCCCCC----CCCchHHHHHH---HcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHH
Q 004911           15 MNNNSTAET----EDSFTSMLELA---SNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVD   87 (724)
Q Consensus        15 m~~di~~~d----~~g~TpLh~AA---~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~e   87 (724)
                      .+.+++..+    .+|.||||+|+   ..|+.++|++||+ .|++.+...-.  ........|..|+||||+||..|+.+
T Consensus        31 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~--~~~~~~~~d~~g~t~L~~A~~~g~~~  107 (260)
T 3jxi_A           31 HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD-IAEKTGNMREF--INSPFRDVYYRGQTALHIAIERRCKH  107 (260)
T ss_dssp             HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH-HHHHTTCHHHH--HTCCBCCSSEESBCHHHHHHHTTCHH
T ss_pred             cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH-hcccccchHhh--hcccccccccCCCCHHHHHHHcCCHH
Confidence            455666554    77999999999   6799999999999 45432221100  00112233568999999999999999


Q ss_pred             HHHHHHhcCCCCcccccC--------------CCCCcHHHHHHhCCCCCHHHHHHHHHH---CCCCCCCCCCCCCcHHHH
Q 004911           88 VLKLILLHSSADVNVSCG--------------SDRTTALHCAASGGSANVVDVVRLLLS---AGADPDCVDANGHHPIDV  150 (724)
Q Consensus        88 vVklLLe~~GADVN~~~d--------------~~G~TPLH~Aa~~G~~~~~eiVklLLe---~GAd~n~~D~~G~TPLhl  150 (724)
                      +|++||++ |+++|.. +              ..|.||||+|+..|+   .++|++||+   +|++++.+|..|+||||+
T Consensus       108 ~v~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~  182 (260)
T 3jxi_A          108 YVELLVEK-GADVHAQ-ARGRFFQPKDEGGYFYFGELPLSLAACTNQ---PHIVHYLTENGHKQADLRRQDSRGNTVLHA  182 (260)
T ss_dssp             HHHHHHHT-TCCTTCC-CEECCCSSSCCCCSCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHhC-CCCcCcc-ccccccCcccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCCcccCCCCCcHHHH
Confidence            99999999 9999998 6              689999999999999   999999999   999999999999999999


Q ss_pred             HhcCCC---------HHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCcc
Q 004911          151 IVLPPK---------LDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMA  221 (724)
Q Consensus       151 Aa~~G~---------~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~  221 (724)
                      |+..++         .++++.|++.+......            ...++..|..|.||||+|+..|+.+++++|++.+..
T Consensus       183 A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~------------~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          183 LVAIADNTRENTKFVTKMYDLLLIKCAKLFPD------------TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             HHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTT------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCchhHHHHHHHHHHHHHHhCcccccc------------cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            997666         45555555543322110            012367899999999999999999999999987644


Q ss_pred             c
Q 004911          222 L  222 (724)
Q Consensus       222 ~  222 (724)
                      .
T Consensus       251 ~  251 (260)
T 3jxi_A          251 D  251 (260)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=1.1e-27  Score=256.35  Aligned_cols=226  Identities=12%  Similarity=0.046  Sum_probs=172.4

Q ss_pred             cccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCc----ccCCCCChHHHHHHHcCCH
Q 004911           11 NTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSK----QMVSEHRTPLMVAATYGSV   86 (724)
Q Consensus        11 ~~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~----~~d~~G~TPLH~AA~~G~~   86 (724)
                      ...+.+++++..+..|.|+++     |++++|+.||+ .|++.+...++++......    .......+.+|+|+..+..
T Consensus        37 ~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~-~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  110 (327)
T 1sw6_A           37 DFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQ-RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQ  110 (327)
T ss_dssp             STTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHH-HHHC-------------------------------CHHHHHH
T ss_pred             HHhhCCcccccCCCCCCcccC-----chhHHHHHHHH-hccCCccccchHhhhcccccccccccCCccchhHHHHHhhHH
Confidence            445568888999999999987     99999999999 6777666444443322100    0111223446888888888


Q ss_pred             HHHHHHHhcCCCCccc-ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCC---HHHHHH
Q 004911           87 DVLKLILLHSSADVNV-SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK---LDSMRA  162 (724)
Q Consensus        87 evVklLLe~~GADVN~-~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~---~eivk~  162 (724)
                      +++++|++. |+|+|. . +.+|+||||+||..|+   .++|++||++|++++.+|..|+||||+|+..|+   .++++.
T Consensus       111 ~~~~~l~~~-g~dvn~~~-d~~g~TpLh~Aa~~g~---~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~  185 (327)
T 1sw6_A          111 EVNDAFPNT-QLNLNIPV-DEHGNTPLHWLTSIAN---LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA  185 (327)
T ss_dssp             HHHHHCTTS-CCCSCSCC-STTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHH
T ss_pred             HHHHHHHhc-CCCccccc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHH
Confidence            999999988 999998 6 8999999999999999   999999999999999999999999999999887   677788


Q ss_pred             HHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHh----cCCCchhhhhc----------------------
Q 004911          163 ILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASA----SGSPPSPSRLV----------------------  216 (724)
Q Consensus       163 LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~----~G~~eiVe~La----------------------  216 (724)
                      |++.+..                  +++..|..|.||||+|+.    .|+.++++.++                      
T Consensus       186 ll~~~~~------------------~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~  247 (327)
T 1sw6_A          186 LLDYLYP------------------CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK  247 (327)
T ss_dssp             HHHHHGG------------------GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----
T ss_pred             HHHhhhc------------------cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcc
Confidence            8876431                  345567788888888888    77777766654                      


Q ss_pred             ---------------------------CCCccccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          217 ---------------------------SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       217 ---------------------------d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                                                 +++.++..|+||||+|+..|+.++++.|++.|++++..|..|.++++++
T Consensus       248 g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          248 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             ------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             cCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence                                       5778889999999999999999999999999999999999999999876

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.93  E-value=1.3e-26  Score=243.09  Aligned_cols=195  Identities=15%  Similarity=0.059  Sum_probs=169.0

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL   94 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe   94 (724)
                      .+++++..  +|.||||+|+..|+.++|++||+ .|++++..             +..|+||||+||..|+.++|++||+
T Consensus        53 ~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~  116 (285)
T 3kea_A           53 AGALKNLL--ENEFPLHQAATLEDTKIVKILLF-SGLDDSQF-------------DDKGNTALYYAVDSGNMQTVKLFVK  116 (285)
T ss_dssp             TTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            45555555  59999999999999999999999 79999876             5899999999999999999999999


Q ss_pred             cCCCCcccccCCCC-CcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCC
Q 004911           95 HSSADVNVSCGSDR-TTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNS  173 (724)
Q Consensus        95 ~~GADVN~~~d~~G-~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~  173 (724)
                      + |++++.. +..| .||||+|+..|+   .+++++|+++|+++... ..|.||||+|+..|+.++++.|++.+.     
T Consensus       117 ~-ga~~~~~-~~~g~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga-----  185 (285)
T 3kea_A          117 K-NWRLMFY-GKTGWKTSFYHAVMLND---VSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMT-----  185 (285)
T ss_dssp             H-CGGGGGC-SSSGGGSHHHHHHHTTC---HHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHH-----
T ss_pred             c-CCCCCcc-CCCCCCCHHHHHHHcCC---HHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCC-----
Confidence            9 9999999 8888 799999999999   99999999999987433 289999999999999999999888632     


Q ss_pred             chhhhcccccccccccCCCCCCCCCh-hchhHhcCCCchhhhhcCCCccccCCCCccccccccCCCCCCCCCCccccccc
Q 004911          174 SVVVASGAEHNLTVSIGSSNSDYSSP-LLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIY  252 (724)
Q Consensus       174 ~~~~aa~~~~~l~~~in~~d~~G~TP-Lh~Aa~~G~~eiVe~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~  252 (724)
                                    +++..|..|.|| ||+|+..|+.+++++|++.++.....+   +.|+..++.++++.|++.|.++.
T Consensus       186 --------------d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~---~~a~~~~~~~iv~~Ll~~g~~~~  248 (285)
T 3kea_A          186 --------------STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN---LENVLLDDAEIAKMIIEKHVEYK  248 (285)
T ss_dssp             --------------HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT---GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred             --------------CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC---hhhhhcCCHHHHHHHHHcCCCCC
Confidence                          456778899998 999999999999888887775443332   46788899999999999887765


Q ss_pred             c
Q 004911          253 A  253 (724)
Q Consensus       253 ~  253 (724)
                      .
T Consensus       249 ~  249 (285)
T 3kea_A          249 S  249 (285)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=2.5e-26  Score=234.31  Aligned_cols=175  Identities=13%  Similarity=0.118  Sum_probs=121.3

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004911           24 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS  103 (724)
Q Consensus        24 ~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~  103 (724)
                      ..|.||||.|+..|+.++++.||+ .|++++..              ..|.||||+||..|+.++|++||+. |+++|..
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~--------------~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~   66 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIA-HGMRVKFN--------------PLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLP   66 (239)
T ss_dssp             -------------------------------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCC
T ss_pred             ccccccCchhhhhhhHHHHHHHhc-cCCCcccC--------------chhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCc
Confidence            468999999999999999999999 88888753              5789999999999999999999999 9999999


Q ss_pred             cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccc
Q 004911          104 CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEH  183 (724)
Q Consensus       104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~  183 (724)
                       |..|+||||+|+..|+   .++|++||++|++++.+|..|+||||+|+..|+.++++.|++.    |+           
T Consensus        67 -d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~----ga-----------  127 (239)
T 1ycs_B           67 -NDEGITALHNAVCAGH---TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES----GA-----------  127 (239)
T ss_dssp             -CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TC-----------
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc----CC-----------
Confidence             9999999999999999   9999999999999999999999999999999999988877763    43           


Q ss_pred             ccccccCCCCCCCC-Chhchh--HhcCCCchhhhhcCCC----cc---------ccCCCCccccccccCC
Q 004911          184 NLTVSIGSSNSDYS-SPLLTA--SASGSPPSPSRLVSSP----MA---------LKFNDVSFGTGAEKRE  237 (724)
Q Consensus       184 ~l~~~in~~d~~G~-TPLh~A--a~~G~~eiVe~Lad~~----a~---------~~~g~TpLh~Aa~~g~  237 (724)
                          +++..+..|. ||||+|  +..|+.+++++|+..+    ..         +..+.++++++...|.
T Consensus       128 ----~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          128 ----AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             ----CTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             ----CcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence                4556666666 999999  8889999977776433    32         4456677777766665

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.92  E-value=1.4e-25  Score=234.31  Aligned_cols=163  Identities=21%  Similarity=0.237  Sum_probs=146.1

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC-CccccccccccccCCcccCCCCChHHHHHH-----HcCCHHHHHHH
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDPS-SVDEVGLWYGRVNGSKQMVSEHRTPLMVAA-----TYGSVDVLKLI   92 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~ga-dIn~~gl~~a~~~g~~~~d~~G~TPLH~AA-----~~G~~evVklL   92 (724)
                      ++..|.+|.||||+||..|+.++|++||+ .|+ +++..             +..|+||||+|+     ..++.+++++|
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~~g~tpL~~a~~~~~~~~~~~~~v~~L  169 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLD-SGVCKVDKQ-------------NRAGYSPIMLTALATLKTQDDIETVLQL  169 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TSCCCTTCC-------------CTTSCCHHHHGGGCCCCSHHHHHHHHHH
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCcCCCC-------------CCCCCCHHHHHHHHHhhhhhhHHHHHHH
Confidence            67889999999999999999999999999 555 88876             588999999999     67899999999


Q ss_pred             HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911           93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN  172 (724)
Q Consensus        93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga  172 (724)
                      ++. |++++.. +..|+||||+|+..|+   .++|++||++|+|+|.+|.+|+||||+|+..|+.++++.|++.   .|+
T Consensus       170 l~~-g~~~~~~-~~~g~tpLh~A~~~g~---~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~---~ga  241 (276)
T 4hbd_A          170 FRL-GNINAKA-SQAGQTALMLAVSHGR---VDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAV---PSC  241 (276)
T ss_dssp             HHH-SCTTCCC-TTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTS---TTC
T ss_pred             HHc-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc---CCC
Confidence            999 8888887 8899999999999999   9999999999999999999999999999999998888876651   342


Q ss_pred             CchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCC
Q 004911          173 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS  218 (724)
Q Consensus       173 ~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~  218 (724)
                                     +++..|..|.||||+|+..|+.+++++|++.
T Consensus       242 ---------------d~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          242 ---------------DISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             ---------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             ---------------CCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                           5667899999999999999999999988754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=5.2e-25  Score=204.65  Aligned_cols=132  Identities=27%  Similarity=0.328  Sum_probs=124.5

Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911           16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH   95 (724)
Q Consensus        16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~   95 (724)
                      +.+++..+..|.||||+|+..|++++|++||+ .|++++..             +..|+||||+||. |+.++|++||++
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~-~~~~~v~~Ll~~   66 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNAL-------------NRFGRRPIQVMMM-GSAQVAELLLLH   66 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCTTTTTSTT-SCHHHHHHHHHH
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCc-------------CCCCCCHHHHHHc-CCHHHHHHHHHC
Confidence            35688899999999999999999999999999 78998876             5899999999999 999999999999


Q ss_pred             CCCCcccccCCC-CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHH
Q 004911           96 SSADVNVSCGSD-RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEV  167 (724)
Q Consensus        96 ~GADVN~~~d~~-G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~L  167 (724)
                       |+++|.. +.. |.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..++.++++.|++.+
T Consensus        67 -g~~~~~~-~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           67 -GAEPNCA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             -TCCSSCC-BTTTTBCHHHHHHHHTC---HHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             -CCCCCCc-CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence             9999999 888 9999999999999   99999999999999999999999999999999999999888764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.91  E-value=6.1e-26  Score=237.11  Aligned_cols=184  Identities=14%  Similarity=0.157  Sum_probs=160.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCC--ccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC-Cccc
Q 004911           26 SFTSMLELASNNDVEGFKRMLERDPSS--VDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA-DVNV  102 (724)
Q Consensus        26 g~TpLh~AA~~G~le~Vk~LLe~~gad--In~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA-DVN~  102 (724)
                      ..+++|.|+..|+++.++.+++ .+.+  +|..             |.+|+||||+||..|+.++|++||+. |+ +++.
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~n~~-------------d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~  140 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSA-RLLDYVVNIA-------------DSNGNTALHYSVSHANFPVVQQLLDS-GVCKVDK  140 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCH-HHHHHHHTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-SCCCTTC
T ss_pred             hccCCCHHHHHHHHHHHHHHHH-HHHhhcCcCC-------------CCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCCC
Confidence            3467788999999999999988 3333  4444             68999999999999999999999999 87 9999


Q ss_pred             ccCCCCCcHHHHHH-----hCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhh
Q 004911          103 SCGSDRTTALHCAA-----SGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVV  177 (724)
Q Consensus       103 ~~d~~G~TPLH~Aa-----~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~  177 (724)
                      . +..|.||||+|+     ..++   .+++++|++.|++++..|..|+||||+|+..|+.++++.|++    .|+     
T Consensus       141 ~-~~~g~tpL~~a~~~~~~~~~~---~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~----~ga-----  207 (276)
T 4hbd_A          141 Q-NRAGYSPIMLTALATLKTQDD---IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLA----CEA-----  207 (276)
T ss_dssp             C-CTTSCCHHHHGGGCCCCSHHH---HHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH----TTC-----
T ss_pred             C-CCCCCCHHHHHHHHHhhhhhh---HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh----CCC-----
Confidence            8 999999999999     4566   999999999999999999999999999999999998887776    343     


Q ss_pred             hcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc-----CCCccccCCCCccccccccCCCCCCCCCCcc
Q 004911          178 ASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV-----SSPMALKFNDVSFGTGAEKREYPIDPSLPDI  247 (724)
Q Consensus       178 aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La-----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~  247 (724)
                                +++..|..|.||||+|+..|+.+++++|+     +.+..+..|.||||+|+..|+.++++.|++.
T Consensus       208 ----------d~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          208 ----------DVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             ----------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             ----------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                      56778999999999999999999977665     4568889999999999999999988877654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=1.6e-24  Score=206.09  Aligned_cols=148  Identities=27%  Similarity=0.293  Sum_probs=115.9

Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911           16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH   95 (724)
Q Consensus        16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~   95 (724)
                      +...+..++.|.||||+||..|++++|++||+ .|++++..             +..|+||||+|+ .|+.++|++||++
T Consensus         2 ep~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~-~~~~~~v~~Ll~~   66 (156)
T 1bi7_B            2 EPAAGSSMEPSADWLATAAARGRVEEVRALLE-AGANPNAP-------------NSYGRRPIQVMM-MGSARVAELLLLH   66 (156)
T ss_dssp             --------CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCC-------------CSSSCCTTTSSC-TTCHHHHHHHHTT
T ss_pred             CCCccCCCccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHH-cCCHHHHHHHHHc
Confidence            34456678899999999999999999999999 78998887             589999999985 9999999999999


Q ss_pred             CCCCcccccCCCCCc-HHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCc
Q 004911           96 SSADVNVSCGSDRTT-ALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSS  174 (724)
Q Consensus        96 ~GADVN~~~d~~G~T-PLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~  174 (724)
                       |+++|.. +..|.| |||+|+..|+   .++|++||++|++++.+|..|+||||+|+..|+.++++.|+    +.|+  
T Consensus        67 -g~~~~~~-d~~g~ttpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll----~~ga--  135 (156)
T 1bi7_B           67 -GAEPNCA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR----AAAG--  135 (156)
T ss_dssp             -TCCCCCC-CTTTCCCHHHHHHHHTC---HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS----SCC---
T ss_pred             -CCCCCCc-CCCCCcHHHHHHHHCCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHH----HcCC--
Confidence             9999999 999999 9999999999   99999999999999999999999999999999988777554    4554  


Q ss_pred             hhhhcccccccccccCCCCCCCCChhch
Q 004911          175 VVVASGAEHNLTVSIGSSNSDYSSPLLT  202 (724)
Q Consensus       175 ~~~aa~~~~~l~~~in~~d~~G~TPLh~  202 (724)
                                   +++..+..|.||.+.
T Consensus       136 -------------~~~~~~~~g~t~~~~  150 (156)
T 1bi7_B          136 -------------GTRGSNHARIDAAEG  150 (156)
T ss_dssp             ----------------------------
T ss_pred             -------------CCCccCcCcCccccc
Confidence                         455667777777763

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.90  E-value=3.9e-24  Score=217.93  Aligned_cols=186  Identities=17%  Similarity=0.148  Sum_probs=150.6

Q ss_pred             HHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCC
Q 004911           42 FKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSA  121 (724)
Q Consensus        42 Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~  121 (724)
                      |+.||+ .+.+++...          ..+.+|.||||+||..|+.++|++||+. |+++|.. |..|+||||+|+..|+ 
T Consensus         1 v~~ll~-~~~~~~~~~----------~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~-   66 (229)
T 2vge_A            1 MRSVLR-KAGSPRKAR----------RARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGAN-   66 (229)
T ss_dssp             ----------CCCCCC----------CTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTC-
T ss_pred             Ceehhc-cCCCCcccc----------ccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCC-
Confidence            467787 666665442          2356788999999999999999999999 9999998 9999999999999999 


Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCC-CCCCChh
Q 004911          122 NVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSN-SDYSSPL  200 (724)
Q Consensus       122 ~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d-~~G~TPL  200 (724)
                        .++|++||++|++++.+|..|+||||+|+..|+.++++.|++    .|+               +++..+ ..|.|||
T Consensus        67 --~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~----~ga---------------~~~~~~~~~g~tpL  125 (229)
T 2vge_A           67 --YSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQ----HGA---------------AIFATTLSDGATAF  125 (229)
T ss_dssp             --HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT----TTC---------------CTTCCCSSTTCCTG
T ss_pred             --HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC---------------CcccccCCCCCCHH
Confidence              999999999999999999999999999999999988887665    443               344554 6899999


Q ss_pred             chh--HhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCccccc--cccccccccccceee
Q 004911          201 LTA--SASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNS--IYATDEFRMFSFKIR  265 (724)
Q Consensus       201 h~A--a~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~--i~~~D~~g~~~fkV~  265 (724)
                      |+|  +..|+.+++++|    ++.+..+..+.++++.++....   ...|+..|++  +...|..|.++++.+
T Consensus       126 ~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A  195 (229)
T 2vge_A          126 EKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWA  195 (229)
T ss_dssp             GGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEE
T ss_pred             HHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHH
Confidence            999  999999985555    5677888889999987665543   3577888888  677899999999987

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.90  E-value=1.7e-23  Score=201.44  Aligned_cols=135  Identities=27%  Similarity=0.374  Sum_probs=127.0

Q ss_pred             ccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHH
Q 004911           12 TEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKL   91 (724)
Q Consensus        12 ~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVkl   91 (724)
                      ..+.+.+++..+.+|.||||+|+..|++++|++||+ .|++++..             +..|+||||+|+..|+.+++++
T Consensus        33 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~   98 (169)
T 2y1l_E           33 LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAV-------------DHAGMTPLRLAALFGHLEIVEV   98 (169)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CCCCCCHHHHHHHcCCHHHHHH
Confidence            344578889999999999999999999999999999 78888876             5889999999999999999999


Q ss_pred             HHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 004911           92 ILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE  165 (724)
Q Consensus        92 LLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe  165 (724)
                      |+++ |++++.. +..|.||||+|+..|+   .++|++|+++|++++.+|..|.||||+|+..|+.++++.|++
T Consensus        99 Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E           99 LLKN-GADVNAN-DMEGHTPLHLAAMFGH---LEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             HHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            9999 9999999 9999999999999999   999999999999999999999999999999999999988775

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=1.2e-23  Score=195.49  Aligned_cols=126  Identities=24%  Similarity=0.313  Sum_probs=117.9

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911           22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN  101 (724)
Q Consensus        22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN  101 (724)
                      ....+.||||+||..|++++|++||+ .|++++..             |..|+||||+||..|+.++|++||++ |+++|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~   74 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMA-NGADVNAK-------------DEYGLTPLYLATAHGHLEIVEVLLKN-GADVN   74 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTT
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence            45568899999999999999999999 78998876             58899999999999999999999999 99999


Q ss_pred             cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911          102 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus       102 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      .. |..|.||||+|+..|+   .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++.
T Consensus        75 ~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           75 AV-DAIGFTPLHLAAFIGH---LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             CC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             cC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            99 9999999999999999   9999999999999999999999999999999999999988763

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.90  E-value=3.6e-23  Score=197.86  Aligned_cols=137  Identities=23%  Similarity=0.321  Sum_probs=129.0

Q ss_pred             ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911           14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL   93 (724)
Q Consensus        14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL   93 (724)
                      +.+.+++..|..|.||||+|+..|++++|++|++ .|++++..             +..|.||||+|+..|+.++|++||
T Consensus        24 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll   89 (167)
T 3v31_A           24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLL-------------GKGRESALSLACSKGYTDIVKMLL   89 (167)
T ss_dssp             HHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCc-------------CCCCCcHHHHHHHcCCHHHHHHHH
Confidence            3467788999999999999999999999999999 78888876             588999999999999999999999


Q ss_pred             hcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHc
Q 004911           94 LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFG  169 (724)
Q Consensus        94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~  169 (724)
                      ++ |++++.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.+.+
T Consensus        90 ~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A           90 DC-GVDVNEY-DWNGGTPLLYAVHGNH---VKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             HH-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HC-CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence            99 9999999 9999999999999999   9999999999999999999999999999999999999999987543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=8.5e-24  Score=215.57  Aligned_cols=168  Identities=16%  Similarity=0.128  Sum_probs=135.6

Q ss_pred             cccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHH
Q 004911           11 NTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLK   90 (724)
Q Consensus        11 ~~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVk   90 (724)
                      ...+.+++++. +..+.||||.|+..|++++|+.||+ .|++++..             |..|+||||+||..|+.++|+
T Consensus        23 ~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~   87 (239)
T 1ycs_B           23 ERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLP-------------NDEGITALHNAVCAGHTEIVK   87 (239)
T ss_dssp             ---------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCC-------------CTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHH
Confidence            33445666665 3778999999999999999999999 78888887             688999999999999999999


Q ss_pred             HHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCC-cHHHHH--hcCCCHHHHHHHHHHH
Q 004911           91 LILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGH-HPIDVI--VLPPKLDSMRAILEEV  167 (724)
Q Consensus        91 lLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~-TPLhlA--a~~G~~eivk~LLe~L  167 (724)
                      +||++ |+++|.. |..|+||||+|+..|+   .++|++||++|++++.+|..|. ||||+|  +..|+.++++.|++..
T Consensus        88 ~Ll~~-ga~~~~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~  162 (239)
T 1ycs_B           88 FLVQF-GVNVNAA-DSDGWTPLHCAASCNN---VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  162 (239)
T ss_dssp             HHHHH-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence            99999 9999999 9999999999999999   9999999999999999998887 999999  7889999999999876


Q ss_pred             HcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCC
Q 004911          168 FGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGS  208 (724)
Q Consensus       168 l~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~  208 (724)
                      ...+....          .......+..+.++++++...|.
T Consensus       163 a~~~~~~~----------~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          163 EKMGIMNK----------GVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHTTTTGG----------GEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hccccccc----------ceEEEEeccCCCCCCcccccCCC
Confidence            65542100          11122347778999999988886

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.90  E-value=3e-24  Score=208.28  Aligned_cols=165  Identities=16%  Similarity=0.221  Sum_probs=145.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 004911           71 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDV  150 (724)
Q Consensus        71 ~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhl  150 (724)
                      .++.++||.||..|+.++|++||+..+.+++.. +..|+||||+|+..|+   .++|++||++|++++.+|..|.||||+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~   78 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGR---SAVVEMLIMRGARINVMNRGDDTPLHL   78 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            468899999999999999999999878899998 9999999999999999   999999999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCC
Q 004911          151 IVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFND  226 (724)
Q Consensus       151 Aa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~  226 (724)
                      |+..|+.++++.|++.    |+               +++..|..|.||||+|+..|+.++++.|    ++.+..+..|.
T Consensus        79 A~~~~~~~~v~~Ll~~----g~---------------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  139 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQY----KA---------------DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE  139 (179)
T ss_dssp             HHHTTCHHHHHHHHHT----TC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSC
T ss_pred             HHHcCCHHHHHHHHHc----CC---------------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCC
Confidence            9999999988877763    42               5667889999999999999999996555    56668889999


Q ss_pred             CccccccccCCCCCCCCCCccccccccccccc
Q 004911          227 VSFGTGAEKREYPIDPSLPDIKNSIYATDEFR  258 (724)
Q Consensus       227 TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g  258 (724)
                      |||++|+..++..+++.|++.|++++..+..+
T Consensus       140 tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          140 MPVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             CGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            99999999999999999999999887766443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=4e-24  Score=211.57  Aligned_cols=162  Identities=13%  Similarity=0.112  Sum_probs=137.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCH----HHHHHHHhcCCCCcc
Q 004911           26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSV----DVLKLILLHSSADVN  101 (724)
Q Consensus        26 g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~----evVklLLe~~GADVN  101 (724)
                      ++++|+.||..|+++.|+.+++. +  ++...            +..|+||||+|+.+|+.    ++|++||++ |+|||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~-~--~~~~~------------~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn   69 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEK-G--YEDKE------------SVLKSNILYDVLRNNNDEARYKISMFLINK-GADIK   69 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHH-S--SSCHH------------HHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSS
T ss_pred             cccHHHHHHHcCCHHHHHHHHhc-C--ccccc------------ccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCC
Confidence            56889999999999999999984 3  23321            25699999999999985    599999999 99999


Q ss_pred             cccCCCCCcHHHHHHhCCCCCH---HHHHHHHHHCCCCCCCCCCCCC-cHHHHHhcCCCH-HHHHHHHHHHHc-CCCCch
Q 004911          102 VSCGSDRTTALHCAASGGSANV---VDVVRLLLSAGADPDCVDANGH-HPIDVIVLPPKL-DSMRAILEEVFG-SKNSSV  175 (724)
Q Consensus       102 ~~~d~~G~TPLH~Aa~~G~~~~---~eiVklLLe~GAd~n~~D~~G~-TPLhlAa~~G~~-eivk~LLe~Ll~-~ga~~~  175 (724)
                      .+ +.+|+||||+|+..|+...   .++|++||++|||+|.+|..|+ ||||+|+..+.. .....++++|+. .|+   
T Consensus        70 ~~-d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga---  145 (186)
T 3t8k_A           70 SR-TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL---  145 (186)
T ss_dssp             CC-CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC---
T ss_pred             CC-CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC---
Confidence            99 9999999999999887432   5889999999999999999999 999999996653 233456677777 775   


Q ss_pred             hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911          176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP  219 (724)
Q Consensus       176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~  219 (724)
                                  +++.+|..|.||||+|+..|+.++|++|.+..
T Consensus       146 ------------d~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          146 ------------QLLIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             ------------CTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ------------CCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence                        67788999999999999999999988887543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.90  E-value=2.8e-23  Score=199.55  Aligned_cols=132  Identities=24%  Similarity=0.320  Sum_probs=125.2

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA   98 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA   98 (724)
                      ++..+..|.||||+|+..|++++|++||+ .|++++..             +..|+||||+|+..|+.++|++||++ |+
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~   93 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLE-WGADPHIL-------------AKERESALSLASTGGYTDIVGLLLER-DV   93 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHTT-TC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhh-------------cccCCCHHHHHHHCCCHHHHHHHHHc-CC
Confidence            67788999999999999999999999999 78888876             58899999999999999999999999 99


Q ss_pred             CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHc
Q 004911           99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFG  169 (724)
Q Consensus        99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~  169 (724)
                      +++.. +..|.||||+|+..|+   .++|++|+++|++++.+|..|.||||+|+..|+.++++.|++.+.+
T Consensus        94 ~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (172)
T 3v30_A           94 DINIY-DWNGGTPLLYAVRGNH---VKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK  160 (172)
T ss_dssp             CTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence            99999 9999999999999999   9999999999999999999999999999999999999999987543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.89  E-value=7.9e-23  Score=193.19  Aligned_cols=128  Identities=25%  Similarity=0.257  Sum_probs=119.4

Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911           16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH   95 (724)
Q Consensus        16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~   95 (724)
                      +.+++ .+..|.||||+|+..|+.++|++|++ .|++++..             +..|+||||+|+..|+.++|++|+++
T Consensus        25 g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~   89 (153)
T 1awc_B           25 GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDAR-------------TKVDRTPLHMAASEGHANIVEVLLKH   89 (153)
T ss_dssp             TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcChHHHHHHHHHc
Confidence            44444 57889999999999999999999999 88888876             58899999999999999999999999


Q ss_pred             CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHH
Q 004911           96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAI  163 (724)
Q Consensus        96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~L  163 (724)
                       |++++.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..|+.++++.|
T Consensus        90 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           90 -GADVNAK-DMLKMTALHWATEHNH---QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence             9999999 9999999999999999   9999999999999999999999999999999999988764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.89  E-value=3.3e-23  Score=196.55  Aligned_cols=133  Identities=23%  Similarity=0.221  Sum_probs=124.4

Q ss_pred             ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911           14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL   93 (724)
Q Consensus        14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL   93 (724)
                      +.+.+++..+..|.||||+|+. |+.++|++|++ .|++++..             +..|+||||+|+..|+.++|++||
T Consensus        26 ~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll   90 (162)
T 1ihb_A           26 QNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLK-------------DRTGFAVIHDAARAGFLDTLQTLL   90 (162)
T ss_dssp             TSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             hCCCCccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4567788899999999999999 99999999999 78998876             588999999999999999999999


Q ss_pred             hcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911           94 LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD-PDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus        94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd-~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      ++ |+++|.. +..|.||||+|+..|+   .++|++|+++|++ ++.+|..|.||||+|+..|+.++++.|++.
T Consensus        91 ~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           91 EF-QADVNIE-DNEGNLPLHLAAKEGH---LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             HT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             Hc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            99 9999999 9999999999999999   9999999999998 599999999999999999999988877764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.89  E-value=6.1e-23  Score=201.02  Aligned_cols=134  Identities=22%  Similarity=0.261  Sum_probs=126.9

Q ss_pred             ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911           14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL   93 (724)
Q Consensus        14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL   93 (724)
                      +.+.+++..+..|.||||+|+..|+.++|++|++ .|++++..             +..|.||||+|+..|+.++|++||
T Consensus        56 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll  121 (192)
T 2rfm_A           56 ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTK-------------DFSGKTPLMWSIIFGYSEMSYFLL  121 (192)
T ss_dssp             HHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HhccccccccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHHH
Confidence            3467788899999999999999999999999999 68888876             588999999999999999999999


Q ss_pred             hcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911           94 LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus        94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      ++ |++++.. +..|.||||+|+..|+   .++|++|+++|++++.+|..|.||||+|+..|+.++++.|++.
T Consensus       122 ~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          122 EH-GANVNDR-NLEGETPLIVASKYGR---SEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HT-TCCSSCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HC-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            99 9999999 9999999999999999   9999999999999999999999999999999999999999885

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=8e-23  Score=184.52  Aligned_cols=123  Identities=37%  Similarity=0.519  Sum_probs=116.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 004911           25 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC  104 (724)
Q Consensus        25 ~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~  104 (724)
                      +|.||||.|+..|+.++|++|++ .+.+++..             +..|.||||+|+..|+.+++++|+++ |++++.. 
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-   64 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAK-------------DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-   64 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-
T ss_pred             CCccHHHHHHHcCcHHHHHHHHH-cCCCCCCc-------------CCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCccc-
Confidence            58999999999999999999999 68888776             57899999999999999999999999 9999999 


Q ss_pred             CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911          105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus       105 d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.
T Consensus        65 ~~~g~t~l~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           65 DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCh---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            9999999999999999   9999999999999999999999999999999999999988875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.2e-23  Score=195.24  Aligned_cols=125  Identities=28%  Similarity=0.342  Sum_probs=114.5

Q ss_pred             CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911           17 NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS   96 (724)
Q Consensus        17 ~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~   96 (724)
                      +|+ ..|.+|.||||+|+..|++++|++||+ .|++++..             +..|+||||+||..|+.+++++||++ 
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-   65 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVK-------------DHAGWTPLHEACNHGHLKVVELLLQH-   65 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-
Confidence            345 678999999999999999999999999 78888876             58899999999999999999999999 


Q ss_pred             CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHH
Q 004911           97 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMR  161 (724)
Q Consensus        97 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk  161 (724)
                      |++++.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..+..++++
T Consensus        66 g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~  126 (137)
T 3c5r_A           66 KALVNTT-GYQNDSPLHDAAKNGH---VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL  126 (137)
T ss_dssp             TCCTTCC-CGGGCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred             CCcccCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHh
Confidence            9999999 9999999999999999   99999999999999999999999999999866655443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.89  E-value=5.8e-23  Score=193.90  Aligned_cols=130  Identities=22%  Similarity=0.236  Sum_probs=123.1

Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911           16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH   95 (724)
Q Consensus        16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~   95 (724)
                      +.+++..+..|.||||+ |..|+.++|++|++ .|++++..             +..|+||||+||..|+.++|++|+++
T Consensus        26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~   90 (156)
T 1bd8_A           26 LVHPDALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQ-------------DTSGTSPVHDAARTGFLDTLKVLVEH   90 (156)
T ss_dssp             CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CcCccccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            45788899999999999 99999999999999 79999877             58899999999999999999999999


Q ss_pred             CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911           96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus        96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                       |++++.. +..|.||||+|+..|+   .++|++|+++ ++++.+|..|.||||+|+..|+.++++.|++.
T Consensus        91 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           91 -GADVNVP-DGTGALPIHLAVQEGH---TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             -TCCSCCC-CTTSCCHHHHHHHHTC---HHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             -CCCCCCc-CCCCCcHHHHHHHhCh---HHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence             9999999 9999999999999999   9999999999 99999999999999999999999999988763

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.89  E-value=8.2e-23  Score=194.99  Aligned_cols=131  Identities=27%  Similarity=0.335  Sum_probs=120.7

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL   94 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe   94 (724)
                      ...+++..+..|.||||+|+..|+.++|++|++ .|++++..             +..|+||||+|+..|+.++|++||+
T Consensus        31 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~   96 (165)
T 3twr_A           31 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAK-------------DKGGLVPLHNACSYGHYEVAELLVK   96 (165)
T ss_dssp             TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCcc-------------CCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            445667788889999999999999999999999 78998877             5889999999999999999999999


Q ss_pred             cCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 004911           95 HSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE  165 (724)
Q Consensus        95 ~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe  165 (724)
                      + |+++|.. +..|+||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+. ++.++++.|++
T Consensus        97 ~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~  161 (165)
T 3twr_A           97 H-GAVVNVA-DLWKFTPLHEAAAKGK---YEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG  161 (165)
T ss_dssp             T-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred             C-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhh
Confidence            9 9999999 9999999999999999   999999999999999999999999999776 88877776654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=3.2e-22  Score=212.55  Aligned_cols=149  Identities=16%  Similarity=0.180  Sum_probs=123.7

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCC
Q 004911           23 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVLKLILLHSSAD   99 (724)
Q Consensus        23 d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evVklLLe~~GAD   99 (724)
                      .....++|+.|+..|+++.|+.||+ .|.+++..-  .     ....+..|+||||+||..   |++++|++||++ |++
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~--~-----~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gad  218 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPL--P-----GPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGH  218 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCE--E-----CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSC
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHh-cCCcccccC--C-----CcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCC
Confidence            3445688999999999999999998 888888630  0     001257899999999997   899999999999 999


Q ss_pred             cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhc
Q 004911          100 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVAS  179 (724)
Q Consensus       100 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa  179 (724)
                      +|.. |.+|+||||+|+..|+   .++|++||++|||++.+|.+|.||||+|+..|+.+++++|++....          
T Consensus       219 vn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------  284 (301)
T 2b0o_E          219 LDAK-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG----------  284 (301)
T ss_dssp             TTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------
T ss_pred             CCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------
Confidence            9999 9999999999999999   9999999999999999999999999999999999999988886332          


Q ss_pred             ccccccccccCCCCCCCCChhchhHhcCCC
Q 004911          180 GAEHNLTVSIGSSNSDYSSPLLTASASGSP  209 (724)
Q Consensus       180 ~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~  209 (724)
                                     .|.||||+|+..|+.
T Consensus       285 ---------------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 ---------------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             ---------------TTSSCCC--------
T ss_pred             ---------------CCCChhHHHHhcCCc
Confidence                           368999999998863

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=4.9e-23  Score=201.22  Aligned_cols=140  Identities=25%  Similarity=0.256  Sum_probs=126.2

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 004911           23 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV  102 (724)
Q Consensus        23 d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~  102 (724)
                      +.+|.||||.|+..|++++|+.||+  +.++|..             |..|+||||+||..|+.++|++||++ |+++|.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-------------d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~  104 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-------------DENGRTALLFVAGLGSDKCVRLLAEA-GADLDH  104 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCc
Confidence            5688999999999999999999999  7788876             68999999999999999999999999 999999


Q ss_pred             ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccc
Q 004911          103 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE  182 (724)
Q Consensus       103 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~  182 (724)
                      ..+..|+||||+|+..|+   .+++++||++|++++.+|..|+||||+|+..++                          
T Consensus       105 ~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~--------------------------  155 (183)
T 3deo_A          105 RDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILK--------------------------  155 (183)
T ss_dssp             CCSSSSCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH--------------------------
T ss_pred             CCCCCCCCHHHHHHhcCc---HHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc--------------------------
Confidence            833899999999999999   999999999999999999999999999985221                          


Q ss_pred             cccccccCCCCCCCCChhchhHhcCCCchhhhhcC
Q 004911          183 HNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS  217 (724)
Q Consensus       183 ~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad  217 (724)
                                ...+.++|++|+..|+.++++.|.+
T Consensus       156 ----------~~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          156 ----------TTPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             ----------TCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             ----------CcccccHHHHHHHcCHHHHHHHHHH
Confidence                      1235899999999999999887764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=5.4e-23  Score=210.91  Aligned_cols=142  Identities=25%  Similarity=0.248  Sum_probs=127.9

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 004911           23 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV  102 (724)
Q Consensus        23 d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~  102 (724)
                      +.+|.||||+||..|++++|+.||+  ++++|..             +..|+||||+||..|+.++|++||++ |+++|.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~  105 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-------------DENGRTALLFVAGLGSDKCVRLLAEA-GADLDH  105 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-------------CTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-------------CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCc
Confidence            4578999999999999999999999  7888876             58899999999999999999999999 999999


Q ss_pred             ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccc
Q 004911          103 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE  182 (724)
Q Consensus       103 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~  182 (724)
                      ..+..|+||||+|+..|+   .++|++||++|++++.+|..|+||||+|+..++                          
T Consensus       106 ~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~--------------------------  156 (244)
T 3ui2_A          106 RDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILK--------------------------  156 (244)
T ss_dssp             CCSSSCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT--------------------------
T ss_pred             CCCCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh--------------------------
Confidence            933889999999999999   999999999999999999999999999984111                          


Q ss_pred             cccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911          183 HNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP  219 (724)
Q Consensus       183 ~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~  219 (724)
                                ...+.||||+|+..|+.++++.+.+..
T Consensus       157 ----------~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          157 ----------TTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             ----------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence                      135689999999999999988887643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.87  E-value=5.9e-23  Score=190.73  Aligned_cols=125  Identities=22%  Similarity=0.267  Sum_probs=115.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCC-CCcHH
Q 004911           70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDAN-GHHPI  148 (724)
Q Consensus        70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~-G~TPL  148 (724)
                      +..|.||||+||..|+.++|++||++ |+++|.. +..|+||||+|+. |+   .++|++|+++|++++.+|.. |+|||
T Consensus         9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~---~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GS---AQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SC---HHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CC---HHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            68999999999999999999999999 9999999 9999999999999 99   99999999999999999999 99999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911          149 DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP  219 (724)
Q Consensus       149 hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~  219 (724)
                      |+|+..|+.++++.|++    .|+               +++..|..|.||||+|+..++.+++++|++.+
T Consensus        83 ~~A~~~~~~~~v~~Ll~----~ga---------------~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHR----AGA---------------RLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHTCHHHHHHHHH----TCC---------------CCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHH----cCC---------------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999998887776    342               46677899999999999999999998887654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=1.8e-22  Score=184.01  Aligned_cols=112  Identities=27%  Similarity=0.389  Sum_probs=104.4

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 004911           23 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV  102 (724)
Q Consensus        23 d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~  102 (724)
                      +..|.|+||+|+..|++++|+.||+ .+.+++..             +..|+||||+||..|+.++|++||++ |+++|.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~   68 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRT-------------LEGGRKPLHYAADCGQLEILEFLLLK-GADINA   68 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSC-------------CTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTC
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCcc-------------CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCc
Confidence            4568899999999999999999999 78888876             58899999999999999999999999 999999


Q ss_pred             ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhc
Q 004911          103 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVL  153 (724)
Q Consensus       103 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~  153 (724)
                      . |..|+||||+|+..|+   .++|++|+++|++++.+|..|.||||+|..
T Consensus        69 ~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           69 P-DKHHITPLLSAVYEGH---VSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             C-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             C-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            9 9999999999999999   999999999999999999999999999954

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.87  E-value=1e-22  Score=201.49  Aligned_cols=139  Identities=11%  Similarity=0.079  Sum_probs=122.2

Q ss_pred             CCCCCCC-CCCchHHHHHHHcCCH----HHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCC------
Q 004911           17 NNSTAET-EDSFTSMLELASNNDV----EGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGS------   85 (724)
Q Consensus        17 ~di~~~d-~~g~TpLh~AA~~G~l----e~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~------   85 (724)
                      .+++..+ ..|.||||+|+..|+.    ++|++||+ .|+++|..             +.+|+||||+|+..|+      
T Consensus        28 ~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~-------------d~~g~TpLh~a~~~~~~~~~~~   93 (186)
T 3t8k_A           28 KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSR-------------TKEGTTLFFPLFQGGGNDITGT   93 (186)
T ss_dssp             HSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCC-------------CTTCCCTHHHHHHHCTTCHHHH
T ss_pred             cCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCcchhhH
Confidence            3445555 7799999999999985    58999999 89999987             6899999999999997      


Q ss_pred             HHHHHHHHhcCCCCcccccCCCCC-cHHHHHHhCCCC--CHHHHHHHHHH-CCCCCCCCCCCCCcHHHHHhcCCCHHHHH
Q 004911           86 VDVLKLILLHSSADVNVSCGSDRT-TALHCAASGGSA--NVVDVVRLLLS-AGADPDCVDANGHHPIDVIVLPPKLDSMR  161 (724)
Q Consensus        86 ~evVklLLe~~GADVN~~~d~~G~-TPLH~Aa~~G~~--~~~eiVklLLe-~GAd~n~~D~~G~TPLhlAa~~G~~eivk  161 (724)
                      .++|++||++ |+|||.+ |..|. ||||+|+..+..  ...+++++||+ +|+|++.+|..|+||||+|+..|+.++++
T Consensus        94 ~~iv~~Ll~~-Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~  171 (186)
T 3t8k_A           94 TELCKIFLEK-GADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK  171 (186)
T ss_dssp             HHHHHHHHHT-TCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHC-CCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            6899999999 9999999 99999 999999995542  12679999999 99999999999999999999999999999


Q ss_pred             HHHHHHHcCC
Q 004911          162 AILEEVFGSK  171 (724)
Q Consensus       162 ~LLe~Ll~~g  171 (724)
                      .|++++.+.+
T Consensus       172 ~L~~~~~~~~  181 (186)
T 3t8k_A          172 MMEDYIKKYN  181 (186)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9998765444

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.86  E-value=3.8e-22  Score=189.64  Aligned_cols=136  Identities=20%  Similarity=0.197  Sum_probs=113.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCc-HH
Q 004911           70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHH-PI  148 (724)
Q Consensus        70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~T-PL  148 (724)
                      +..|.||||+||..|+.++|++||++ |+++|.. +..|+||||+|+ .|+   .++|++||++|++++.+|..|+| ||
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~---~~~v~~Ll~~g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGS---ARVAELLLLHGAEPNCADPATLTRPV   82 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTC---HHHHHHHHTTTCCCCCCCTTTCCCHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCC---HHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            57899999999999999999999999 9999999 999999999985 888   99999999999999999999999 99


Q ss_pred             HHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCC----CccccC
Q 004911          149 DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS----PMALKF  224 (724)
Q Consensus       149 hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~----~a~~~~  224 (724)
                      |+|+..|+.++++.|++.    |+               +++..|..|.||||+|+..|+.+++++|+..    +..+..
T Consensus        83 ~~A~~~~~~~~v~~Ll~~----ga---------------~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  143 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRA----GA---------------RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHA  143 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHH----TC---------------CSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------
T ss_pred             HHHHHCCCHHHHHHHHHc----CC---------------CCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcC
Confidence            999999999999888875    32               5667789999999999999999997777654    455666


Q ss_pred             CCCccc
Q 004911          225 NDVSFG  230 (724)
Q Consensus       225 g~TpLh  230 (724)
                      |.|+.+
T Consensus       144 g~t~~~  149 (156)
T 1bi7_B          144 RIDAAE  149 (156)
T ss_dssp             ------
T ss_pred             cCcccc
Confidence            777655

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.86  E-value=7.8e-24  Score=232.25  Aligned_cols=178  Identities=13%  Similarity=0.058  Sum_probs=145.0

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC--
Q 004911           22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSAD--   99 (724)
Q Consensus        22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD--   99 (724)
                      .+.++.||||+||..|++++|++||+ .|+.....          ..++..|.||||+||.+|+.++|++||++ |+|  
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~-~ga~~~~~----------~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~  155 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCL-LLTSDEIV----------KVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEI  155 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTT-C--CCSSC----------C--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTH
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHH-cCCcHHHH----------HHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcc
Confidence            34566799999999999999999999 55521110          01134578999999999999999999999 876  


Q ss_pred             -cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCC--CCCCCCcHHHHHh-cCCCHHHHHHHHHHHHcCCCCch
Q 004911          100 -VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC--VDANGHHPIDVIV-LPPKLDSMRAILEEVFGSKNSSV  175 (724)
Q Consensus       100 -VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~--~D~~G~TPLhlAa-~~G~~eivk~LLe~Ll~~ga~~~  175 (724)
                       ++.. +.+ .||||+||..|+   .++|++|+++|++++.  .|..|.||||+|+ ..|+.++++.|++.    |+   
T Consensus       156 ~~~i~-~~~-~TpLh~Aa~~G~---~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~----ga---  223 (376)
T 2aja_A          156 MAMIQ-AEN-YHAFRLAAENGH---LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC----PV---  223 (376)
T ss_dssp             HHHHS-HHH-HHHHHHHHHTTC---HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS----HH---
T ss_pred             ccccC-CCC-CCHHHHHHHCCC---HHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC----CC---
Confidence             2332 223 999999999999   9999999999999988  8999999999999 99999999887762    20   


Q ss_pred             hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccCCCCccccccccCCCCCCC
Q 004911          176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDP  242 (724)
Q Consensus       176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~  242 (724)
                                         .|.||||+|+..|+.+++++|+..++.....+++++.|+..|+.+++.
T Consensus       224 -------------------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~  271 (376)
T 2aja_A          224 -------------------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT  271 (376)
T ss_dssp             -------------------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSS
T ss_pred             -------------------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhc
Confidence                               168999999999999999999887765555667899999999998764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.86  E-value=8.7e-22  Score=182.83  Aligned_cols=125  Identities=23%  Similarity=0.324  Sum_probs=114.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911           70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID  149 (724)
Q Consensus        70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLh  149 (724)
                      ...+.||||+||..|+.++|++||++ |+++|.. +..|+||||+|+..|+   .++|++|+++|++++.+|..|.||||
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~   85 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGH---LEIVEVLLKNGADVNAVDAIGFTPLH   85 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence            45688999999999999999999999 9999999 9999999999999999   99999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCC
Q 004911          150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS  218 (724)
Q Consensus       150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~  218 (724)
                      +|+..|+.++++.|++.    |+               +++..|..|.||||+|+..|+.++++.|++.
T Consensus        86 ~A~~~~~~~~v~~Ll~~----g~---------------~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKH----GA---------------DVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHHHTCHHHHHHHHHT----TC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHc----CC---------------CCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            99999999988877763    42               4567789999999999999999999988764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=4.4e-22  Score=199.68  Aligned_cols=127  Identities=21%  Similarity=0.278  Sum_probs=114.3

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911           22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN  101 (724)
Q Consensus        22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN  101 (724)
                      .+.+|.||||+||..|++++|+.||+ .|++++..             +..|+||||+||..|+.++|++||+..|+++|
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~  134 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGL-------------DKAGSTALYWACHGGHKDIVEMLFTQPNIELN  134 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC
T ss_pred             cccccccccccccccCcHHHHHHHHh-CCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc
Confidence            34567899999999999999999999 88998876             58899999999999999999999998799999


Q ss_pred             cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911          102 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus       102 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      .. |..|+||||+|+..|+   .++|++||++|++++.+|..|.||||+|+..++.++++.+++.
T Consensus       135 ~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~  195 (222)
T 3ehr_A          135 QQ-NKLGDTALHAAAWKGY---ADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT  195 (222)
T ss_dssp             CC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----
T ss_pred             cc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc
Confidence            99 9999999999999999   9999999999999999999999999999998877777665553

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=1.7e-21  Score=180.67  Aligned_cols=124  Identities=20%  Similarity=0.164  Sum_probs=111.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911           70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID  149 (724)
Q Consensus        70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLh  149 (724)
                      +.+|+||||+||..|+.++|++||+. |++++.. +..|+||||+|+..|+   .+++++|+++|++++.+|..|+||||
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~   81 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGH---LKVVELLLQHKALVNTTGYQNDSPLH   81 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCcccCcCCCCCCHHH
Confidence            68899999999999999999999999 9999999 9999999999999999   99999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcC
Q 004911          150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS  217 (724)
Q Consensus       150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad  217 (724)
                      +|+..|+.++++.|++.    |+               +++..|..|.||||+|+..+..++++.+..
T Consensus        82 ~A~~~~~~~~v~~Ll~~----ga---------------~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSY----GA---------------SRNAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             HHHHTTCHHHHHHHHHT----TC---------------CTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             HHHHcCCHHHHHHHHHc----CC---------------CCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            99999999988877763    42               456778899999999998888777665543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.85  E-value=3.3e-21  Score=173.84  Aligned_cols=125  Identities=34%  Similarity=0.513  Sum_probs=114.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 004911           72 EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVI  151 (724)
Q Consensus        72 ~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlA  151 (724)
                      +|+||||+|+..|+.++|++|+++ |++++.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCcHHHHH
Confidence            489999999999999999999999 9999998 9999999999999999   9999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc
Q 004911          152 VLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM  220 (724)
Q Consensus       152 a~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a  220 (724)
                      +..|+.++++.|++.    |+               +++..|..|.||||+|+..|+.+++++|++.++
T Consensus        76 ~~~~~~~~~~~Ll~~----g~---------------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           76 ARNGHLEVVKLLLEA----GA---------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HHTTCHHHHHHHHHT----TC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHcChHHHHHHHHHc----CC---------------CCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            999999988877763    32               456778899999999999999999998887653

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=1.4e-20  Score=205.74  Aligned_cols=131  Identities=20%  Similarity=0.248  Sum_probs=118.6

Q ss_pred             CCCCCCCchHHHHHHHc-CCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911           20 TAETEDSFTSMLELASN-NDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA   98 (724)
Q Consensus        20 ~~~d~~g~TpLh~AA~~-G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA   98 (724)
                      +....++.|+||.|+.. |++++|+.||+ .|+++|...           .+.+|.||||+||..|++++|++||++ |+
T Consensus       193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~-----------~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Ga  259 (368)
T 3jue_A          193 DLGSLHPGALLFRASGHPPSLPTMADALA-HGADVNWVN-----------GGQDNATPLIQATAANSLLACEFLLQN-GA  259 (368)
T ss_dssp             ----CCHHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCC-----------TTTTCCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             ccccCCCCcHHHHHHHccCCHHHHHHHHH-cCCCCCccc-----------cccCCCCHHHHHHHCCCHHHHHHHHHc-CC
Confidence            34455677999999999 99999999999 899998762           127899999999999999999999999 99


Q ss_pred             CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHH
Q 004911           99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEV  167 (724)
Q Consensus        99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~L  167 (724)
                      |+|.. |..|+||||+|+..|+   .++|++||++||+++.+|.+|.||||+|+..|+.+++++|++..
T Consensus       260 dvn~~-d~~G~TpLh~A~~~g~---~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          260 NVNQA-DSAGRGPLHHATILGH---TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             CTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCC-CCCCCCHHHHHHHcCc---HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999 9999999999999999   99999999999999999999999999999999999999888764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.83  E-value=7.6e-21  Score=173.16  Aligned_cols=116  Identities=21%  Similarity=0.244  Sum_probs=102.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911           70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID  149 (724)
Q Consensus        70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLh  149 (724)
                      +..|.||||+|+..|+.++|++||+. |+++|.. +..|+||||+|+..|+   .++|++|+++|++++.+|..|+||||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~tpL~   78 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLKGADINAPDKHHITPLL   78 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence            45788999999999999999999999 9999999 9999999999999999   99999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCC
Q 004911          150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSP  209 (724)
Q Consensus       150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~  209 (724)
                      +|+..|+.++++.|++.    |+               +++..|..|.||||+|+..+..
T Consensus        79 ~A~~~~~~~~v~~Ll~~----ga---------------~~~~~~~~g~t~l~~A~~~~~~  119 (123)
T 3aaa_C           79 SAVYEGHVSCVKLLLSK----GA---------------DKTVKGPDGLTAFEATDNQAIK  119 (123)
T ss_dssp             HHHHHTCHHHHHHHHHT----TC---------------CTTCCCTTSCCHHHHCCCHHHH
T ss_pred             HHHHcCCHHHHHHHHHc----CC---------------CCCCcCCCCCCHHHHhCCHHHH
Confidence            99999999988877763    42               4567789999999999655433

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=4.4e-20  Score=193.76  Aligned_cols=132  Identities=17%  Similarity=0.255  Sum_probs=117.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCC
Q 004911           23 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVLKLILLHSSAD   99 (724)
Q Consensus        23 d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evVklLLe~~GAD   99 (724)
                      +....++|+.|+..|+++.++.+++ .|.+++..-       .....+..|+||||+||..   |+.++|++||++ |++
T Consensus       127 ~~~~l~~l~~a~~~~d~~~~~~ll~-~g~~~~~~~-------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~  197 (278)
T 1dcq_A          127 TAAKLHSLCEAVKTRDIFGLLQAYA-DGVDLTEKI-------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGN  197 (278)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH-TTCCTTSBC-------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSC
T ss_pred             cchhhhhhhhHhhhcccHHHHHHHH-hhcchhhhc-------cccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCC
Confidence            3345689999999999999999999 788866531       0112257899999999999   899999999999 999


Q ss_pred             cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHH
Q 004911          100 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEV  167 (724)
Q Consensus       100 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~L  167 (724)
                      +|.. |..|+||||+|+..|+   .++|++||++|||++.+|.+|.||||+|+..|+.++++.|++.+
T Consensus       198 in~~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          198 LDKQ-TGKGSTALHYCCLTDN---AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             TTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999 9999999999999999   99999999999999999999999999999999999999888864

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.82  E-value=3.9e-20  Score=209.33  Aligned_cols=130  Identities=16%  Similarity=0.190  Sum_probs=115.6

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHH---cCCHHHHHHHHhcCCCCc
Q 004911           24 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAAT---YGSVDVLKLILLHSSADV  100 (724)
Q Consensus        24 ~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~---~G~~evVklLLe~~GADV  100 (724)
                      ....+.||.|+..|++++|+.||+ .|+++|....       ....+..|+||||+||.   .|+.++|++||++ |+|+
T Consensus       130 ~~~~~~L~~A~~~g~~~~v~~ll~-~g~~~n~~~~-------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga~v  200 (497)
T 3lvq_E          130 TPEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLP-------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHL  200 (497)
T ss_dssp             C-CHHHHHHHHHHTCHHHHHHHHH-TTCCSSSCBC-------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SCCT
T ss_pred             cccHHHHHHHHhccCHHHHHHHHh-hcccccCCCC-------CcccccccchHHHHHHHhcccccHHHHHHHHHc-CCCC
Confidence            344588999999999999999999 7899886510       11225789999999976   8999999999999 9999


Q ss_pred             ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911          101 NVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE  166 (724)
Q Consensus       101 N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~  166 (724)
                      |.. |.+|+||||+||..|+   .++|++||++|||++.+|.+|+||||+|+..|+.++++.|++.
T Consensus       201 n~~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  262 (497)
T 3lvq_E          201 DAK-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA  262 (497)
T ss_dssp             TCC-CSSSCCHHHHHTTTTC---HHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             Ccc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999 9999999999999999   9999999999999999999999999999999999888877663

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.82  E-value=2.4e-21  Score=189.17  Aligned_cols=171  Identities=22%  Similarity=0.173  Sum_probs=133.3

Q ss_pred             HHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHH
Q 004911           33 LASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTAL  112 (724)
Q Consensus        33 AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPL  112 (724)
                      |++.|..+++++|++.......   .|..........+.+|.||||+||..|+.++|++||+  |+++|.. +..|+|||
T Consensus         7 aa~~~~~~~~~~li~~~~~~~~---~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L   80 (183)
T 3deo_A            7 GSRTAGEGAMEYLIEWKDGHSP---SWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTAL   80 (183)
T ss_dssp             EEEEETTTEEEEEEEETTCCCC---EEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHH
T ss_pred             HHHhcCCchhHHHHHHhCCCCc---cccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHH
Confidence            3444555566666653111111   1222222233345689999999999999999999998  8999998 99999999


Q ss_pred             HHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCC
Q 004911          113 HCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGS  191 (724)
Q Consensus       113 H~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~  191 (724)
                      |+|+..|+   .++|++||++|++++.+| ..|+||||+|+..|+.++++.|++.    |+               +++.
T Consensus        81 ~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~----ga---------------~~~~  138 (183)
T 3deo_A           81 LFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL----GA---------------DIEV  138 (183)
T ss_dssp             HHHHHHTC---HHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHH----TC---------------CTTC
T ss_pred             HHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHc----CC---------------CCcC
Confidence            99999999   999999999999999998 8999999999999999999888875    32               4567


Q ss_pred             CCCCCCChhchhHhcCCCchhhhhcCCCccccCCCCccccccccCCCCCCCCC
Q 004911          192 SNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSL  244 (724)
Q Consensus       192 ~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L  244 (724)
                      .|..|.||||+|+..++.             ..+.++|++|+..|..+++..|
T Consensus       139 ~d~~g~tpl~~A~~~~~~-------------~~~~~~l~~a~~~~~~~i~~~L  178 (183)
T 3deo_A          139 EDERGLTALELAREILKT-------------TPKGNPMQFGRRIGLEKVINVL  178 (183)
T ss_dssp             CCTTSCCHHHHHHHHHHT-------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHhccC-------------cccccHHHHHHHcCHHHHHHHH
Confidence            799999999999998754             3457788888877766665544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.81  E-value=1.6e-20  Score=188.22  Aligned_cols=167  Identities=18%  Similarity=0.193  Sum_probs=128.3

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCC---------cccCCCCChHHHHHHHcCCHHHHHHH
Q 004911           22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGS---------KQMVSEHRTPLMVAATYGSVDVLKLI   92 (724)
Q Consensus        22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~---------~~~d~~G~TPLH~AA~~G~~evVklL   92 (724)
                      .+.++.+++.+++..|++..|..+.+        .+.|.+...+.         ...+.+|.||||+||..|+.++|++|
T Consensus        21 ~d~~~~~~~el~~~~Gd~~~v~~~~~--------~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~L   92 (222)
T 3ehr_A           21 YTFEPRTPDELYIEEGDIIYITDMSD--------TNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLREC   92 (222)
T ss_dssp             SCCCCSSTTBCCCCTTCEEEEEECCS--------SSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHH
T ss_pred             CCcCCCCCCcccccCCCEEEEecccc--------chhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHH
Confidence            34455566666666666543322221        22233332221         12356789999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCC
Q 004911           93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA-GADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSK  171 (724)
Q Consensus        93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~g  171 (724)
                      |+. |+++|.. +..|+||||+||..|+   .++|++||++ |++++.+|..|+||||+|+..|+.++++.|++.    |
T Consensus        93 l~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~----g  163 (222)
T 3ehr_A           93 LDN-RVGVNGL-DKAGSTALYWACHGGH---KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK----G  163 (222)
T ss_dssp             HHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH----T
T ss_pred             HhC-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc----C
Confidence            998 9999998 9999999999999999   9999999999 999999999999999999999999999888875    3


Q ss_pred             CCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc
Q 004911          172 NSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM  220 (724)
Q Consensus       172 a~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a  220 (724)
                      +               +++..|..|.||||+|+..|+.++++.++..++
T Consensus       164 a---------------~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          164 A---------------RTDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             C---------------CSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             C---------------CCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            2               456778899999999999998888887776653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.81  E-value=2e-21  Score=199.13  Aligned_cols=141  Identities=24%  Similarity=0.164  Sum_probs=126.1

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHH
Q 004911           71 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPID  149 (724)
Q Consensus        71 ~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLh  149 (724)
                      .+|.||||+||..|+.++|++||+  |+++|.. +..|+||||+|+..|+   .++|++||++|++++.+| ..|+||||
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~t~L~  116 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSCCCHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence            568999999999999999999998  8999999 9999999999999999   999999999999999998 88999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccCCCCcc
Q 004911          150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSF  229 (724)
Q Consensus       150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~g~TpL  229 (724)
                      +|+..|+.++++.|++.    |+               +++..|..|.||||+|+..+.             ...+.|||
T Consensus       117 ~A~~~g~~~~v~~Ll~~----ga---------------~~~~~d~~g~t~l~~A~~~~~-------------~~~~~~~l  164 (244)
T 3ui2_A          117 MAAGYVRPEVVEALVEL----GA---------------DIEVEDERGLTALELAREILK-------------TTPKGNPM  164 (244)
T ss_dssp             HHHHTTCHHHHHHHHHT----TC---------------CTTCCCTTCCCHHHHHHHHHT-------------TCCCSSHH
T ss_pred             HHHHcCCHHHHHHHHHC----CC---------------CCCCCCCCCCcHHHHHHHHHh-------------ccCCCCHH
Confidence            99999999988877763    43               566789999999999998653             35689999


Q ss_pred             ccccccCCCCCCCCCCcccc
Q 004911          230 GTGAEKREYPIDPSLPDIKN  249 (724)
Q Consensus       230 h~Aa~~g~~~i~~~L~d~ga  249 (724)
                      ++|+..|+.+++..|.+.+.
T Consensus       165 ~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          165 QFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHE
T ss_pred             HHHHHcChHHHHHHHHHhcc
Confidence            99999999999888876533

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.81  E-value=1.6e-21  Score=213.94  Aligned_cols=199  Identities=13%  Similarity=0.054  Sum_probs=132.0

Q ss_pred             CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 004911           21 AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADV  100 (724)
Q Consensus        21 ~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADV  100 (724)
                      ..+..|.||||+||..|++++|++|++ .|++++..+.        +  +.+ .||||+||..|+.++|++||++ |+++
T Consensus       123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~i--------~--~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~  189 (376)
T 2aja_A          123 VIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMI--------Q--AEN-YHAFRLAAENGHLHVLNRLCEL-APTE  189 (376)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHH--------S--HHH-HHHHHHHHHTTCHHHHHHHHHS-CGGG
T ss_pred             HhccCCCCHHHHHHHcCCHHHHHHHHh-CCCCcccccc--------C--CCC-CCHHHHHHHCCCHHHHHHHHHc-CCcc
Confidence            344568899999999999999999999 6765322110        0  112 8999999999999999999999 9998


Q ss_pred             cc--ccCCCCCcHHHHHH-hCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC--Cch
Q 004911          101 NV--SCGSDRTTALHCAA-SGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN--SSV  175 (724)
Q Consensus       101 N~--~~d~~G~TPLH~Aa-~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga--~~~  175 (724)
                      +.  . +..|.||||+|+ ..|+   .++|++|+++|++       |.||||+|+..|+.++++.|++.......  ...
T Consensus       190 ~~~~~-d~~g~TpL~~Aa~~~G~---~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l  258 (376)
T 2aja_A          190 ATAMI-QAENYYAFRWAAVGRGH---HNVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAF  258 (376)
T ss_dssp             HHHHH-HHHHHHHHHHHHSTTCC---HHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTT
T ss_pred             chhcc-CCCCCCHHHHHHHHCCC---HHHHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCcccccccHHH
Confidence            87  6 788999999999 9999   9999999998853       89999999999999999999886542210  001


Q ss_pred             hhhccccc-c---------------------------------------cccccCCCCCCCCChhchhHhcCCCchhhhh
Q 004911          176 VVASGAEH-N---------------------------------------LTVSIGSSNSDYSSPLLTASASGSPPSPSRL  215 (724)
Q Consensus       176 ~~aa~~~~-~---------------------------------------l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L  215 (724)
                      ..++.... .                                       ...........+.||||+|+..|+.++++.|
T Consensus       259 ~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lL  338 (376)
T 2aja_A          259 KLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL  338 (376)
T ss_dssp             TTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHH
T ss_pred             HHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHH
Confidence            01110000 0                                       0000112233556788888888888888888


Q ss_pred             cCCC-ccccCCCCccccccccCCCCCCCC
Q 004911          216 VSSP-MALKFNDVSFGTGAEKREYPIDPS  243 (724)
Q Consensus       216 ad~~-a~~~~g~TpLh~Aa~~g~~~i~~~  243 (724)
                      +..+ +.+..++|++.+|...|+.++...
T Consensus       339 l~~~~v~~~~~~~~~~~~~~~~~~~~~~~  367 (376)
T 2aja_A          339 LSIPSVLALTKANNYYINETGGRLDLRAV  367 (376)
T ss_dssp             TTSHHHHHSCC------------------
T ss_pred             HcChHHHHHHHHhccccccccccccHHHH
Confidence            8765 466678888887777777766554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.4e-19  Score=156.92  Aligned_cols=88  Identities=42%  Similarity=0.644  Sum_probs=47.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHh
Q 004911           73 HRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIV  152 (724)
Q Consensus        73 G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa  152 (724)
                      |+||||+||..|+.++|++||++ |+++|.+ |..|+||||+|+..|+   .++|++|+++|++++.+|..|+||||+|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            45555555555555555555555 5555555 5555555555555555   55555555555555555555555555555


Q ss_pred             cCCCHHHHHHHHH
Q 004911          153 LPPKLDSMRAILE  165 (724)
Q Consensus       153 ~~G~~eivk~LLe  165 (724)
                      ..|+.++++.|++
T Consensus        77 ~~~~~~~~~~Ll~   89 (93)
T 1n0q_A           77 RNGHLEVVKLLLE   89 (93)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH
Confidence            5555555544443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.80  E-value=6.8e-20  Score=194.58  Aligned_cols=141  Identities=14%  Similarity=0.136  Sum_probs=119.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCcccc-----cCCCCCcHHHHHHhC---CCCCHHHHHHHHHHCCCCCCCCCCCC
Q 004911           73 HRTPLMVAATYGSVDVLKLILLHSSADVNVS-----CGSDRTTALHCAASG---GSANVVDVVRLLLSAGADPDCVDANG  144 (724)
Q Consensus        73 G~TPLH~AA~~G~~evVklLLe~~GADVN~~-----~d~~G~TPLH~Aa~~---G~~~~~eiVklLLe~GAd~n~~D~~G  144 (724)
                      +.++||.|+..|++++|++||+. |+|++..     .+..|.||||+|+..   |+   +++|++||++|+++|.+|.+|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~---~~iv~~Ll~~gadvn~~d~~G  226 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQAS---LPLVDFIIQNGGHLDAKAADG  226 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTT---HHHHHHHHHHSSCTTCCCTTC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCc---HHHHHHHHhcCCCCCCCCCCC
Confidence            45789999999999999999998 9999982     288999999999997   67   999999999999999999999


Q ss_pred             CcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccC
Q 004911          145 HHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKF  224 (724)
Q Consensus       145 ~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~  224 (724)
                      +||||+|+..|+.++++.|++    .|+               +++..|..|.||||+|+..|+.+++++|++.++.  .
T Consensus       227 ~TpLh~A~~~g~~~~v~~Ll~----~ga---------------d~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--~  285 (301)
T 2b0o_E          227 NTALHYAALYNQPDCLKLLLK----GRA---------------LVGTVNEAGETALDIARKKHHKECEELLEQAQAG--T  285 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH----TTC---------------CCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--T
T ss_pred             CCHHHHHHHcCCHHHHHHHHH----cCC---------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--C
Confidence            999999999999998887776    343               5667899999999999999999999999887754  6


Q ss_pred             CCCccccccccCCC
Q 004911          225 NDVSFGTGAEKREY  238 (724)
Q Consensus       225 g~TpLh~Aa~~g~~  238 (724)
                      |.||||+|+..|+.
T Consensus       286 g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          286 FAFPLHVDYSWVIS  299 (301)
T ss_dssp             TSSCCC--------
T ss_pred             CCChhHHHHhcCCc
Confidence            89999999988753

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=3.8e-20  Score=166.28  Aligned_cols=110  Identities=30%  Similarity=0.415  Sum_probs=100.3

Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 004911           20 TAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSAD   99 (724)
Q Consensus        20 ~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD   99 (724)
                      .+.|.+|.||||+|+..|++++++.||+ .+++++..             |..|+||||+|+..|+.++|++||++ |++
T Consensus         3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~   67 (115)
T 2l6b_A            3 MWGSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNAR-------------SKDGNTPLHLAAKNGHAEIVKLLLAK-GAD   67 (115)
T ss_dssp             -CCSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCC-------------CSSSCCTTHHHHTTTCHHHHHHHTTT-TCC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence            3578899999999999999999999999 78888876             58899999999999999999999999 999


Q ss_pred             cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHH
Q 004911          100 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI  148 (724)
Q Consensus       100 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPL  148 (724)
                      ++.. +..|.||||+|+..|+   .+++++|+++|+++|.++..|.+|-
T Consensus        68 ~~~~-d~~g~tpl~~A~~~~~---~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           68 VNAR-SKDGNTPEHLAKKNGH---HEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCC-CTTCCCTTHHHHTTTC---HHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             Cccc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCccccccc
Confidence            9998 9999999999999999   9999999999999999999998874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=2.3e-19  Score=155.64  Aligned_cols=75  Identities=40%  Similarity=0.511  Sum_probs=68.7

Q ss_pred             ccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC
Q 004911           57 GLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD  136 (724)
Q Consensus        57 gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd  136 (724)
                      .+++......+..|.+|+||||+|+..|+.++|++||++ |++++.+ |.+|.||||+|+..|+   .+++++|+++||+
T Consensus        19 ~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~-d~~g~t~l~~A~~~~~---~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           19 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCC
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCC
Confidence            345556667788899999999999999999999999999 9999999 9999999999999999   9999999999985

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.76  E-value=2.8e-18  Score=179.92  Aligned_cols=187  Identities=16%  Similarity=0.093  Sum_probs=140.2

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCC----------Cccccccc----cccccCCcc---cCCCCChHHHHHHHcC
Q 004911           22 ETEDSFTSMLELASNNDVEGFKRMLERDPS----------SVDEVGLW----YGRVNGSKQ---MVSEHRTPLMVAATYG   84 (724)
Q Consensus        22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~ga----------dIn~~gl~----~a~~~g~~~---~d~~G~TPLH~AA~~G   84 (724)
                      .|.-+.+.|+.+...|+..+.+.+...-..          +.....-|    |....-...   ......++|+.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            466778899999999998776655431110          00000001    111110000   1122357899999999


Q ss_pred             CHHHHHHHHhcCCCCccccc-----CCCCCcHHHHHHhC---CCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCC
Q 004911           85 SVDVLKLILLHSSADVNVSC-----GSDRTTALHCAASG---GSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK  156 (724)
Q Consensus        85 ~~evVklLLe~~GADVN~~~-----d~~G~TPLH~Aa~~---G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~  156 (724)
                      +++.++.|++. |++++...     +..|+||||+|+..   |+   .++|++||++|+++|.+|..|+||||+|+..|+
T Consensus       142 d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~---~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~  217 (278)
T 1dcq_A          142 DIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTS---LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN  217 (278)
T ss_dssp             CHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT---HHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred             ccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccch---HHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence            99999999999 99955331     78899999999999   77   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccCCCCcccccccc
Q 004911          157 LDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEK  235 (724)
Q Consensus       157 ~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~g~TpLh~Aa~~  235 (724)
                      .++++.|++    .|+               +++..|..|.||||+|+..|+.++++.|+..++    +.+++|.+++.
T Consensus       218 ~~~v~~Ll~----~ga---------------d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~v~~  273 (278)
T 1dcq_A          218 AECLKLLLR----GKA---------------SIEIANESGETPLDIAKRLKHEHCEELLTQALS----GRFNSHVHVEY  273 (278)
T ss_dssp             HHHHHHHHH----TTC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT----TCCCSSCCCCC
T ss_pred             HHHHHHHHH----cCC---------------CCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcceeeec
Confidence            998887766    453               566789999999999999999999999987764    35666665543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.74  E-value=2.2e-18  Score=154.67  Aligned_cols=92  Identities=30%  Similarity=0.428  Sum_probs=87.1

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHH
Q 004911           69 MVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI  148 (724)
Q Consensus        69 ~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPL  148 (724)
                      .|.+|+||||+||..|+.+++++||++ |++++.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.|||
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~d~~g~tpl   79 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNAR-SKDGNTPLHLAAKNGH---AEIVKLLLAKGADVNARSKDGNTPE   79 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCC-CSSSCCTTHHHHTTTC---HHHHHHHTTTTCCTTCCCTTCCCTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCCHH
Confidence            478999999999999999999999999 9999999 9999999999999999   9999999999999999999999999


Q ss_pred             HHHhcCCCHHHHHHHHH
Q 004911          149 DVIVLPPKLDSMRAILE  165 (724)
Q Consensus       149 hlAa~~G~~eivk~LLe  165 (724)
                      |+|+..++.++++.|++
T Consensus        80 ~~A~~~~~~~~~~~Ll~   96 (115)
T 2l6b_A           80 HLAKKNGHHEIVKLLDA   96 (115)
T ss_dssp             HHHHTTTCHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHH
Confidence            99999999887776554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.73  E-value=3.5e-18  Score=186.80  Aligned_cols=124  Identities=23%  Similarity=0.251  Sum_probs=112.9

Q ss_pred             CCChHHHHHHHc-CCHHHHHHHHhcCCCCcccccC--CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHH
Q 004911           72 EHRTPLMVAATY-GSVDVLKLILLHSSADVNVSCG--SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI  148 (724)
Q Consensus        72 ~G~TPLH~AA~~-G~~evVklLLe~~GADVN~~~d--~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPL  148 (724)
                      .+.|+||.||.. |++++|++||++ |+|+|.. +  ..|.||||+|+..|+   +++|++||++|+++|.+|..|+|||
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~-~~~~~g~TpLh~Aa~~g~---~~iv~~LL~~Gadvn~~d~~G~TpL  272 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAH-GADVNWV-NGGQDNATPLIQATAANS---LLACEFLLQNGANVNQADSAGRGPL  272 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCC-CTTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHc-CCCCCcc-ccccCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            345799999999 999999999999 9999998 6  899999999999999   9999999999999999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911          149 DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP  219 (724)
Q Consensus       149 hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~  219 (724)
                      |+|+..|+.+++++|++.    |+               +++..|.+|.||||+|+..|+.+++++|+...
T Consensus       273 h~A~~~g~~~~v~~LL~~----Ga---------------d~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          273 HHATILGHTGLACLFLKR----GA---------------DLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHT----TC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHC----cC---------------CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999988877763    43               56678999999999999999999999887554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=1.5e-17  Score=149.20  Aligned_cols=92  Identities=32%  Similarity=0.441  Sum_probs=85.2

Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCc
Q 004911           67 KQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHH  146 (724)
Q Consensus        67 ~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~T  146 (724)
                      ..++.+|.||||+||..|+.++|++||++ |+++|.. |..|.||||+|+..|+   .++|++||++|++++.+|..|+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~-d~~g~tpLh~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t   92 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAK-DKNGSTPLHLAARNGH---LEVVKLLLEAGADVXAQDKFGKT   92 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccCCCc
Confidence            34578999999999999999999999999 9999999 9999999999999999   99999999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHH
Q 004911          147 PIDVIVLPPKLDSMRAI  163 (724)
Q Consensus       147 PLhlAa~~G~~eivk~L  163 (724)
                      |||+|+..|+.++++.|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999988754

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.67  E-value=2e-16  Score=141.73  Aligned_cols=93  Identities=25%  Similarity=0.324  Sum_probs=84.2

Q ss_pred             CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911           19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA   98 (724)
Q Consensus        19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA   98 (724)
                      ....+.+|.|+||+||..|++++|++||+ .|++++..             |..|+||||+||..|+.++|++||++ |+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~-------------d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga   81 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAK-------------DKNGSTPLHLAARNGHLEVVKLLLEA-GA   81 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence            45567899999999999999999999999 78998876             58999999999999999999999999 99


Q ss_pred             CcccccCCCCCcHHHHHHhCCCCCHHHHHHHH
Q 004911           99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLL  130 (724)
Q Consensus        99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklL  130 (724)
                      +++.. |..|+||||+|+..|+   .+++++|
T Consensus        82 ~~~~~-d~~g~tpl~~A~~~~~---~~~~~~L  109 (110)
T 2zgd_A           82 DVXAQ-DKFGKTAFDISIDNGN---EDLAEIL  109 (110)
T ss_dssp             CTTCC-CTTSCCHHHHHHHHTC---HHHHHHH
T ss_pred             Ccccc-ccCCCcHHHHHHHcCC---HHHHHHh
Confidence            99999 9999999999999999   9999987

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=98.72  E-value=3.9e-09  Score=89.29  Aligned_cols=61  Identities=36%  Similarity=0.791  Sum_probs=29.1

Q ss_pred             CccccCCCCCC-CCCcCCCCCCcccCCCcccccC---CccccccccCCCC---CCCCCcc-cccccCCCc
Q 004911          295 FHYSCVPCPDF-RKGACRRGDMCEYAHGVFECWL---HPAQYRTRLCKDG---TSCDRRV-CFFAHTAEE  356 (724)
Q Consensus       295 y~Ys~~~CP~~-rkG~C~~Gd~C~~aH~~~E~~~---hP~~yrT~~C~~~---~~C~~~~-C~faH~~~e  356 (724)
                      -.|...+|+.| +.|.|+.|+.|.|+|+..|+..   || .|+|++|+.|   +.|++|. |.|+|..+|
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccc-cccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            35788999998 5899999999999999988874   44 7999999965   7899997 999999876

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.42  E-value=2.7e-08  Score=82.83  Aligned_cols=60  Identities=25%  Similarity=0.659  Sum_probs=55.2

Q ss_pred             CCCCCCCCCcCCCCC-CcccCCCcccccCCccccccccCCCC--CCCCCcccccccCCCcccc
Q 004911          300 VPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELRP  359 (724)
Q Consensus       300 ~~CP~~rkG~C~~Gd-~C~~aH~~~E~~~hP~~yrT~~C~~~--~~C~~~~C~faH~~~e~r~  359 (724)
                      ..|.+|..|.|.+|+ .|.|+|...+.+.++..+++..|.+|  +.|.++.|+|+|.+.+||.
T Consensus         7 ~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~L~~   69 (70)
T 3d2q_A            7 EVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQA   69 (70)
T ss_dssp             EBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCHHHHC
T ss_pred             hhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHHHHhc
Confidence            469999999999999 59999999999988999999999997  8999999999999998873

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.82  E-value=1.4e-06  Score=77.15  Aligned_cols=61  Identities=26%  Similarity=0.634  Sum_probs=54.9

Q ss_pred             cCCCCCCCCCcCCCCC-CcccCCCcccccCCccccccccCCCC--CCCCCcccccccCCCcccc
Q 004911          299 CVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELRP  359 (724)
Q Consensus       299 ~~~CP~~rkG~C~~Gd-~C~~aH~~~E~~~hP~~yrT~~C~~~--~~C~~~~C~faH~~~e~r~  359 (724)
                      ...|.+|..|.|.+|| .|.|+|...+....+...++..|.+|  +.|.|+.|+|.|...+|+.
T Consensus        20 ~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~l~~   83 (98)
T 2e5s_A           20 LEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQA   83 (98)
T ss_dssp             EEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred             hhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChHHHHH
Confidence            4579999999999999 79999999888777778999999999  9999999999999888764

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=97.73  E-value=1.6e-05  Score=70.38  Aligned_cols=49  Identities=29%  Similarity=0.552  Sum_probs=42.6

Q ss_pred             ccccCCCCCCCCCcCCCCCCcccCCCcccccCCccccccccCCCC---CCCCCcc-cccccCCCc
Q 004911          296 HYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCDRRV-CFFAHTAEE  356 (724)
Q Consensus       296 ~Ys~~~CP~~rkG~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~---~~C~~~~-C~faH~~~e  356 (724)
                      .+...+|..|..|.|.+|+.|.|.|.            +..|+.|   +.|++|. |.|+|....
T Consensus        10 ~~k~~lC~~f~~G~C~~G~~C~f~H~------------~~~C~~f~~~G~C~~G~~C~f~H~~~~   62 (98)
T 2cqe_A           10 PKKRELCKFYITGFCARAENCPYMHG------------DFPCKLYHTTGNCINGDDCMFSHDPLT   62 (98)
T ss_dssp             SCCCSBCTTTTTTCCSCSTTCSSBSS------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             CCCCccCcccccCcCCCCCCCCCCCC------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence            36778999999999999999999999            6779876   7899987 999998643

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.45  E-value=5.2e-05  Score=64.05  Aligned_cols=58  Identities=26%  Similarity=0.523  Sum_probs=46.8

Q ss_pred             cCccccCCCCCCCCCcCCCCCCcccCCCcccccCCccccccccCCCC---CCCCCcccccccCCCccc
Q 004911          294 KFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCDRRVCFFAHTAEELR  358 (724)
Q Consensus       294 ~y~Ys~~~CP~~rkG~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~---~~C~~~~C~faH~~~e~r  358 (724)
                      ...+....|..|..|.|.+|+.|.|+|....       -++..|++|   +.|....|.|+|...+.+
T Consensus         5 ~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~   65 (77)
T 2d9n_A            5 SSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMPECYFYSKFGECSNKECPFLHIDPESK   65 (77)
T ss_dssp             CSCCTTSBCHHHHTTCCSCTTSSSSBCSCCT-------TTSCBCHHHHHTCCCCCSSCSSBCCCTTSS
T ss_pred             CCCCcceeCHhHccCcCCCCCCCCCcccccc-------CcCCCCcccCCCCccCCCCeeccCCCcccc
Confidence            3456778999999999999999999999543       356679988   889955599999976544

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.23  E-value=3.6e-05  Score=63.05  Aligned_cols=27  Identities=30%  Similarity=0.551  Sum_probs=14.5

Q ss_pred             ccccCCCC--CCCCCcc-cccccCCCcccc
Q 004911          333 RTRLCKDG--TSCDRRV-CFFAHTAEELRP  359 (724)
Q Consensus       333 rT~~C~~~--~~C~~~~-C~faH~~~e~r~  359 (724)
                      ++++|+.|  +.|++|. |.|||+.+|||.
T Consensus        19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~   48 (69)
T 2d9m_A           19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE   48 (69)
T ss_dssp             CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred             CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence            33555554  4555554 555555555554

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=97.22  E-value=7.4e-05  Score=62.28  Aligned_cols=56  Identities=27%  Similarity=0.568  Sum_probs=44.6

Q ss_pred             ccccCCCCCCCCCcCCCCCCcccCCCcccccCCccccccccCCCC---CCCCCcccccccCCCccc
Q 004911          296 HYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCDRRVCFFAHTAEELR  358 (724)
Q Consensus       296 ~Ys~~~CP~~rkG~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~---~~C~~~~C~faH~~~e~r  358 (724)
                      .+....|..|..|.|.+|+.|.|.|...       .-++..|++|   +.|.+..|+|.|...+.|
T Consensus        13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~-------~~~~~~C~~f~~~G~C~~~~C~y~H~~p~~k   71 (72)
T 2rhk_C           13 GEKTVVCKHWLRGLCKKGDQCEFLHEYD-------MTKMSECYFYSKFGECSNKECPFLHIDPESK   71 (72)
T ss_dssp             CCCCSBCHHHHTTCCCCGGGSSSBCSCC-------TTSCCBCHHHHHHSCCSBTTCCSBCCCCC--
T ss_pred             CCcCeeCHHHhcCCCCCCCCCCCccccc-------cccCCcccccCCCCCCCCCCeeccCCCcccc
Confidence            3456789999999999999999999943       2467789985   789996699999876554

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=97.07  E-value=0.00012  Score=62.61  Aligned_cols=66  Identities=30%  Similarity=0.663  Sum_probs=49.9

Q ss_pred             ccCCCCCCCCCcCCCCC-CcccCCCcccccCCccccccccCCCC--CCCCCcccccccCCCccccccccCC
Q 004911          298 SCVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELRPLYVSNG  365 (724)
Q Consensus       298 s~~~CP~~rkG~C~~Gd-~C~~aH~~~E~~~hP~~yrT~~C~~~--~~C~~~~C~faH~~~e~r~~~~~~~  365 (724)
                      ....|.+|..|.|.++| .|.|+|.......  ..-+...|.+|  +.|.|+.|+|.|.+..+..-...+|
T Consensus         8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~--~~~~~~vC~dflkG~C~r~~C~y~H~~~~l~~~~~i~g   76 (83)
T 3d2n_A            8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQV--ENGRVIACFDSLKGRCSRENCKYLHPPPHLKTQLEING   76 (83)
T ss_dssp             EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCE--ETTEEECCHHHHTTCCCCSSCSSCCCCHHHHHHHHHHT
T ss_pred             cchhcHHHhcCCCCCCCCCCCCcCCCccccc--cCCceeehhHhhhccccCCCcceeCChHHHHHHHhcCC
Confidence            34579999999999998 9999999653211  13456679988  8899999999999887765443333

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=96.68  E-value=0.00024  Score=61.59  Aligned_cols=59  Identities=31%  Similarity=0.703  Sum_probs=47.3

Q ss_pred             cCCCCCCCCCcCCCCC-CcccCCCcccccCCccccccccCCCC--CCCCCcccccccCCCcccc
Q 004911          299 CVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELRP  359 (724)
Q Consensus       299 ~~~CP~~rkG~C~~Gd-~C~~aH~~~E~~~hP~~yrT~~C~~~--~~C~~~~C~faH~~~e~r~  359 (724)
                      ...|.+|..|.|.++| .|.|+|.......  +.-+...|.+|  +.|.|..|.|.|.+..|..
T Consensus        17 ~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v--~~~~~~vC~dflkG~C~r~~Cky~H~~~hl~~   78 (89)
T 2rpp_A           17 LEVCRQFQRGTCSRSDEECKFAHPPKSCQV--ENGRVIACFDSLKGRCSRENCKYLHPPTHLKT   78 (89)
T ss_dssp             ECBCHHHHHTCCCCCTTTSSSBCCCSSSCC--BTTBEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred             hhhchHHhcCCCCCCCCCCCCcCCCccccc--cCCceeeehhhhhCcCCCCCcceecCHHHHHH
Confidence            4569999999999999 9999999654321  13356779988  8999999999999877654

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.65  E-value=0.0002  Score=58.60  Aligned_cols=40  Identities=28%  Similarity=0.606  Sum_probs=34.7

Q ss_pred             CCCCCCCCCcCCCCCCcccCCCcccccC---CccccccccCCC
Q 004911          300 VPCPDFRKGACRRGDMCEYAHGVFECWL---HPAQYRTRLCKD  339 (724)
Q Consensus       300 ~~CP~~rkG~C~~Gd~C~~aH~~~E~~~---hP~~yrT~~C~~  339 (724)
                      .+|..|.+|.|+.|+.|.||||..|+..   .+...++++|+-
T Consensus        21 ~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~A   63 (69)
T 2d9m_A           21 SICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKA   63 (69)
T ss_dssp             SBCHHHHHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSC
T ss_pred             ccCcccCcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHH
Confidence            9999998899999999999999999865   366778887764

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=96.29  E-value=0.0017  Score=54.40  Aligned_cols=32  Identities=38%  Similarity=0.728  Sum_probs=28.2

Q ss_pred             ccccccccCCCC---CCCCCcc-cccccCCCccccc
Q 004911          329 PAQYRTRLCKDG---TSCDRRV-CFFAHTAEELRPL  360 (724)
Q Consensus       329 P~~yrT~~C~~~---~~C~~~~-C~faH~~~e~r~~  360 (724)
                      +..|||++|+.|   +.|++|. |.|+|..+|+|.+
T Consensus         7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~   42 (77)
T 1m9o_A            7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   42 (77)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCCccchhCHHhhhCCCcCCCCCccCCCCChhhccc
Confidence            457999999977   6899998 9999999999964

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=88.60  E-value=0.077  Score=44.82  Aligned_cols=41  Identities=27%  Similarity=0.668  Sum_probs=29.8

Q ss_pred             cCCCCCCCCCcCCCCCCcccCCCcccccCCccccccccCCCCCCCCCcccccccC
Q 004911          299 CVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHT  353 (724)
Q Consensus       299 ~~~CP~~rkG~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~~~C~~~~C~faH~  353 (724)
                      ..+|.....  |.+ ..|.|.|.           ....|+++..|.+..|.|.|-
T Consensus        31 ~~~Cr~g~~--C~~-~~C~f~HP-----------~~~~Crf~~~C~n~~C~F~Hp   71 (80)
T 2lhn_A           31 HIMCREGAN--CTR-IDCLFGHP-----------INEDCRFGVNCKNIYCLFRHP   71 (80)
Confidence            346666554  776 45777774           136799999999988999994

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=88.64  E-value=0.23  Score=43.59  Aligned_cols=33  Identities=33%  Similarity=0.886  Sum_probs=27.7

Q ss_pred             CCCCcccCCCCCccCCCCccCccccCCCCCC-CCCcCCCCCCcccCCCc
Q 004911          275 WTECPFVHPGENARRRDPRKFHYSCVPCPDF-RKGACRRGDMCEYAHGV  322 (724)
Q Consensus       275 wteCpf~H~ge~arRRdPr~y~Ys~~~CP~~-rkG~C~~Gd~C~~aH~~  322 (724)
                      ...|+|.|.               ..+|+.| ..|.|++|+.|.|.|..
T Consensus        27 G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~   60 (98)
T 2cqe_A           27 AENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDP   60 (98)
T ss_dssp             STTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCC
Confidence            346888885               4679998 58999999999999985

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.58  E-value=0.26  Score=41.11  Aligned_cols=53  Identities=19%  Similarity=0.403  Sum_probs=37.1

Q ss_pred             cCCCCCCCCcccCCCCCccCCCCccCccccCCCCCCCC-CcCCCCCCcccCCCcccccCCccccccccCCCC
Q 004911          270 AYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRK-GACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG  340 (724)
Q Consensus       270 ~~shdwteCpf~H~ge~arRRdPr~y~Ys~~~CP~~rk-G~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~  340 (724)
                      +.+.....|.|.|.....          ....|..|.+ |.|. ++.|.|.|...       ..++..|.+|
T Consensus        19 G~C~~G~~C~fsH~~~~~----------~~~~C~~f~~~G~C~-~~~C~f~H~~~-------~~~~~~C~~f   72 (77)
T 2d9n_A           19 GLCKKGDQCEFLHEYDMT----------KMPECYFYSKFGECS-NKECPFLHIDP-------ESKIKDCPWS   72 (77)
T ss_dssp             TCCSCTTSSSSBCSCCTT----------TSCBCHHHHHTCCCC-CSSCSSBCCCT-------TSSCSSSSCC
T ss_pred             CcCCCCCCCCCccccccC----------cCCCCcccCCCCccC-CCCeeccCCCc-------cccCCCCccc
Confidence            334434579999965421          1246988887 9999 89999999943       3467778776

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=88.22  E-value=0.086  Score=44.52  Aligned_cols=41  Identities=29%  Similarity=0.769  Sum_probs=32.3

Q ss_pred             CCCCCCCCCcCCCCCCcccCCCcccccCCccccccccCCCCCCCCCcccccccC
Q 004911          300 VPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHT  353 (724)
Q Consensus       300 ~~CP~~rkG~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~~~C~~~~C~faH~  353 (724)
                      ..|..+..  |.+ +.|.|.|...          ...|++|..|.+..|.|+|-
T Consensus        10 e~CKf~~~--Ctn-~~C~f~Hp~~----------~~~Cr~g~~C~~~~C~f~HP   50 (80)
T 2lhn_A           10 EQCKFGTH--CTN-KRCKYRHARS----------HIMCREGANCTRIDCLFGHP   50 (80)
Confidence            45644454  888 8999999642          45899999999988999995

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=84.41  E-value=0.31  Score=40.25  Aligned_cols=31  Identities=26%  Similarity=0.473  Sum_probs=25.4

Q ss_pred             CccccccccCCCC--CCCCCcc-cccccCCCccc
Q 004911          328 HPAQYRTRLCKDG--TSCDRRV-CFFAHTAEELR  358 (724)
Q Consensus       328 hP~~yrT~~C~~~--~~C~~~~-C~faH~~~e~r  358 (724)
                      |-..+++..|++|  +.|.+|. |.|+|..+..|
T Consensus        10 ~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~~   43 (72)
T 2rhk_C           10 HMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTK   43 (72)
T ss_dssp             SSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCTTS
T ss_pred             cCCCCcCeeCHHHhcCCCCCCCCCCCcccccccc
Confidence            3567889999988  8899987 99999976543

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=82.84  E-value=0.49  Score=38.73  Aligned_cols=45  Identities=29%  Similarity=0.644  Sum_probs=32.4

Q ss_pred             CCcccCCCCCccCCCCccCccccCCCCCCCCCcCCCCCCcccCCCcccc
Q 004911          277 ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFEC  325 (724)
Q Consensus       277 eCpf~H~ge~arRRdPr~y~Ys~~~CP~~rkG~C~~Gd~C~~aH~~~E~  325 (724)
                      +|+|.|+.+...-   +.-.+....|-.|.+|.|.++ .|.|.|...++
T Consensus        23 ~C~f~H~~~~~~~---~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~L   67 (70)
T 3d2q_A           23 DCRFAHPADSTMI---DTNDNTVTVCMDYIKGRCSRE-KCKYFHPPAHL   67 (70)
T ss_dssp             TCSSBCCCTTSCC---BTTTTEEEBCHHHHTTCCCCT-TCCSBCCCHHH
T ss_pred             CCCCccCcccccc---cccCCcceeccccCcCCCCCC-CcCeeCCHHHH
Confidence            5999996642211   112345678999999999998 99999986543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	724
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.001
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-04
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	2e-04
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	8e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.002
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.001
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 4e-15
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
           TPL VA+  G + ++K  LL   A  NV       T LH AA  G     +V + LL   
Sbjct: 2   TPLHVASFMGHLPIVKN-LLQRGASPNV-SNVKVETPLHMAARAGH---TEVAKYLLQNK 56

Query: 135 ADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
           A  +    +   P+         + ++ +LE
Sbjct: 57  AKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 87

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 1e-10
 Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 23/116 (19%)

Query: 34  ASNNDVEGFKRMLER--DPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKL 91
           +    +   K +L+R   P+  +                    TPL +AA  G  +V K 
Sbjct: 8   SFMGHLPIVKNLLQRGASPNVSNVKV----------------ETPLHMAARAGHTEVAKY 51

Query: 92  ILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHP 147
            LL + A VN     D  T LHCAA  G     ++V+LLL   A+P+     GH P
Sbjct: 52  -LLQNKAKVNA-KAKDDQTPLHCAARIGH---TNMVKLLLENNANPNLATTAGHTP 102

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 2e-10
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 45  MLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC 104
            +     ++  V                  +PL  AA  G  D++ L LL + A  N   
Sbjct: 302 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL-LLKNGASPNE-V 359

Query: 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
            SD TT L  A   G  +V DV++++    +     D + 
Sbjct: 360 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHR 399

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 5e-09
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 36/112 (32%)

Query: 71  SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRT--------------------- 109
               TPL + A  G V V  + L+     V+ +     T                     
Sbjct: 262 KSGLTPLHLVAQEGHVPVADV-LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 320

Query: 110 -----------TALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDV 150
                      + LH AA  G     D+V LLL  GA P+ V ++G  P+ +
Sbjct: 321 ADVNAKTKLGYSPLHQAAQQGH---TDIVTLLLKNGASPNEVSSDGTTPLAI 369

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 73  HRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLS 132
             TPL VAA YG V V +L LL   A  N   G +  T LH A    +   +D+V+LLL 
Sbjct: 132 GFTPLHVAAKYGKVRVAEL-LLERDAHPNA-AGKNGLTPLHVAVHHNN---LDIVKLLLP 186

Query: 133 AGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
            G  P     NG+ P+ +     +++  R++L+
Sbjct: 187 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 219

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 1e-07
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 22/111 (19%)

Query: 110 TALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFG 169
           T LH A+  G    + +V+ LL  GA P+  +     P+ +       +  + +L+    
Sbjct: 2   TPLHVASFMGH---LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ---- 54

Query: 170 SKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM 220
                    + A+ N          D  +PL  A+  G       L+ +  
Sbjct: 55  ---------NKAKVNAK------AKDDQTPLHCAARIGHTNMVKLLLENNA 90

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 24/150 (16%)

Query: 18  NSTAETEDSFTSMLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV-- 70
           +  A  ++  T +     +N+++  K +L R   P S    G   L         ++   
Sbjct: 157 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 216

Query: 71  ------------SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASG 118
                        +  TPL +AA  G  +++ L+   S             T LH  A  
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL--LSKQANGNLGNKSGLTPLHLVAQE 274

Query: 119 GSANVVDVVRLLLSAGADPDCVDANGHHPI 148
           G    V V  +L+  G   D     G+ P+
Sbjct: 275 GH---VPVADVLIKHGVMVDATTRMGYTPL 301

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.1 bits (173), Expect = 4e-14
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 28/165 (16%)

Query: 1   MCCGPDKSESNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLER---DPSSVDEVG 57
                  + +       +     +   T++++ A    VE  K +L+    D ++ D +G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 58  LWYGRVNGSKQMVSEH---------------------RTPLMVAATYGSVDVLKLILLHS 96
                        S+                      +TPL++A     + +++ +L   
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

Query: 97  SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD 141
             ++N    SD  TAL  A          +  LL   GA  DC D
Sbjct: 243 HIEIND-TDSDGKTALLLAVELKL---KKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 2e-12
 Identities = 50/209 (23%), Positives = 75/209 (35%), Gaps = 22/209 (10%)

Query: 1   MCCGPDKSESNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWY 60
              G  K          +        FT+ +E A    V+  K + +R       V L  
Sbjct: 80  AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA----NVNLRR 135

Query: 61  GRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGS 120
                 +++     T LM AA  G V+VLK++L    ADVN      R   +H   S   
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195

Query: 121 ANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASG 180
           ++V  +  LLL  GAD +     G  P+ + V    L  ++ +LE+              
Sbjct: 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ------------EH 243

Query: 181 AEHNLTVSIGSSNSDYSSPLLTASASGSP 209
            E N T      +SD  + LL A      
Sbjct: 244 IEINDT------DSDGKTALLLAVELKLK 266

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 1e-07
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVV 124
           E    L+ A     VD+++  LL   A+VN        T LH A      ++V
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQ-LLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG 144
           +    L  A        VD+V+ LL  GA+ +  +  G
Sbjct: 4   EDNHLLIKAVQNED---VDLVQQLLEGGANVNFQEEEG 38

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 65.7 bits (159), Expect = 5e-12
 Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 8/96 (8%)

Query: 74  RTPLMVAATYGSVDVLKLI--LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
                VAA  G    L  +  LL S   V V   ++   A   AA  G    + V+  L 
Sbjct: 91  EVICFVAAITGCSSALDTLCLLLTSDEIVKV-IQAENYQAFRLAAENGH---LHVLNRLC 146

Query: 132 SAGADPDCVDAN--GHHPIDVIVLPPKLDSMRAILE 165
                          +H   +      L  +  + E
Sbjct: 147 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 182

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 52.6 bits (125), Expect = 7e-08
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 11/84 (13%)

Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNV----------SCGSDRTTALHCAASGGSANVV 124
             + +  T     V +L+ L+  A  N             G         AA  G ++ +
Sbjct: 48  IHIFLPGTKNMEQVRQLLCLYY-AHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSAL 106

Query: 125 DVVRLLLSAGADPDCVDANGHHPI 148
           D + LLL++      + A  +   
Sbjct: 107 DTLCLLLTSDEIVKVIQAENYQAF 130

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.9 bits (118), Expect = 5e-07
 Identities = 17/129 (13%), Positives = 31/129 (24%), Gaps = 11/129 (8%)

Query: 7   KSESNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGS 66
                      +     E      +    N   E        +P  V ++      + G 
Sbjct: 218 DCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF 277

Query: 67  KQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGS---DRTTALHCAASGGSANV 123
             +       L+       +D ++ +L            +   D    L  A   G+   
Sbjct: 278 YML-----RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN--- 329

Query: 124 VDVVRLLLS 132
                LLLS
Sbjct: 330 QGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.6 bits (112), Expect = 3e-06
 Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 5/77 (6%)

Query: 71  SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDR-TTALHCAASGGSANVVDVVRL 129
           +E+     +AA  G + VL   L   +    ++        A   AA       + V+  
Sbjct: 124 AENYQAFRLAAENGHLHVLNR-LCELAPTEIMAMIQAENYHAFRLAAEN---GHLHVLNR 179

Query: 130 LLSAGADPDCVDANGHH 146
           L               +
Sbjct: 180 LCELAPTEATAMIQAEN 196

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.9 bits (92), Expect = 8e-04
 Identities = 19/147 (12%), Positives = 40/147 (27%), Gaps = 18/147 (12%)

Query: 21  AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVA 80
               +++ +    A N  +    R+ E  P+ +  +                      +A
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY------------HAFRLA 168

Query: 81  ATYGSVDVLKLILLHSSADVNVSC--GSDRTTALHCAASGGSANVVDVVRLLLSAGADPD 138
           A  G + VL   L   +     +     +       A   G     +V+  LL       
Sbjct: 169 AENGHLHVLNR-LCELAPTEATAMIQAENYYAFRWAAVGRG---HHNVINFLLDCPVMLA 224

Query: 139 CVDANGHHPIDVIVLPPKLDSMRAILE 165
             + +     +  V P     +  + E
Sbjct: 225 YAEIHEFEYGEKYVNPFIARHVNRLKE 251

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.5 bits (91), Expect = 0.001
 Identities = 20/167 (11%), Positives = 37/167 (22%), Gaps = 45/167 (26%)

Query: 16  NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEV--------GLWYGRVNGSK 67
                    +++ +    A N  +    R+ E  P+    +          W     G  
Sbjct: 151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 210

Query: 68  QMV-------SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGS 120
            ++              +    YG   V   I  H +    +        A   +   G 
Sbjct: 211 NVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH------DAFKLSNPDGV 264

Query: 121 ANVV------------------------DVVRLLLSAGADPDCVDAN 143
            ++V                        D +R LLS           
Sbjct: 265 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA 311

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.8 bits (151), Expect = 2e-11
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
              T L VAA  G  +VLK +L+ +  DVN+    D  T LH AA  G     +  R+L+
Sbjct: 198 SGGTALHVAAAKGYTEVLK-LLIQARYDVNIKD-YDGWTPLHAAAHWGK---EEACRILV 252

Query: 132 SAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN 172
               D + V+  G    DV       + +   LEE+   +N
Sbjct: 253 ENLCDMEAVNKVGQTAFDVAD-----EDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.9 bits (107), Expect = 9e-06
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI 148
           D       A S G     + V  LL  GAD +  + +G   +
Sbjct: 39  DDGAVFLAACSSGD---TEEVLRLLERGADINYANVDGLTAL 77

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.8 bits (99), Expect = 7e-05
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 9/71 (12%)

Query: 68  QMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVV 127
               +  TPL  AA +G  +  ++ L+ +  D+         TA   A         D++
Sbjct: 227 IKDYDGWTPLHAAAHWGKEEACRI-LVENLCDMEA-VNKVGQTAFDVADE-------DIL 277

Query: 128 RLLLSAGADPD 138
             L       +
Sbjct: 278 GYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANV 123
           +     + A + G  + +   LL   AD+N     D  TALH A    + ++
Sbjct: 39  DDGAVFLAACSSGDTEEVLR-LLERGADINY-ANVDGLTALHQACIDDNVDM 88

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.7 bits (143), Expect = 3e-10
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 71  SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG-SDRTTALHCAASGGSANVVDVVRL 129
           +E  +            +L+ + L       ++   S+  T L+ AA  G+   + +V  
Sbjct: 221 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN---ISIVDA 277

Query: 130 LLSAGADPDCVDANGHHPID 149
           LL  GADP   + +G  P+D
Sbjct: 278 LLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 89  LKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI 148
           +     ++  ++N+       T LH   S  +   +++V+ L+  G++    D  G   +
Sbjct: 88  VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN---LELVKHLVKHGSNRLYGDNMGESCL 144

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 71  SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTT---ALHCAASGGSANVVDVV 127
               TPL    +  +++++K  L+   ++         +    A+    +  S     ++
Sbjct: 105 EHGNTPLHWLTSIANLELVKH-LVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 163

Query: 128 RLLLSAGADPDCVDANGHHPI 148
             L       D ++    H I
Sbjct: 164 DYLYPCLILEDSMNRTILHHI 184

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.1 bits (131), Expect = 8e-09
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 75  TPLMVAATY-GSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDV-----VR 128
           +P+ +     GS  + + I       VN+       T LH  AS  SA   +       +
Sbjct: 2   SPIKLHTEAAGSYAITEPIT---RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 129 LLLSAGADPDCVDANGHHPIDVIVLPPKLDSM 160
             ++AGAD + +D + + P+ + VL  +   +
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLV 90

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.0 bits (123), Expect = 8e-08
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 71  SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
            + +TP+M+AA  G ++V+   L+   A V     +D  TA   A +       ++V + 
Sbjct: 219 EDGKTPIMLAAQEGRIEVVMY-LIQQGASVEAVDATDH-TARQLAQANNH---HNIVDIF 273

Query: 131 L 131
            
Sbjct: 274 D 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 72  EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
           + RT L  AA   ++ ++K ++    ++ +     D  T +  AA  G    ++VV  L+
Sbjct: 186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDK-QDEDGKTPIMLAAQEGR---IEVVMYLI 241

Query: 132 SAGADPDCVDANGHHPIDV 150
             GA  + VDA  H    +
Sbjct: 242 QQGASVEAVDATDHTARQL 260

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 68  QMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVV 127
              +  RTPL +A    +  VL+L LL + AD          T L  A    +     + 
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLEL-LLKAGADPTA-RMYGGRTPLGSALLRPN---PILA 241

Query: 128 RLLLSAGADPD 138
           RLL + GA   
Sbjct: 242 RLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 18/106 (16%), Positives = 24/106 (22%), Gaps = 33/106 (31%)

Query: 74  RTPLMVAATYGSVDVLKLILLHSSADVNV--SCGSDRTTALHCAASGGSA---------- 121
            T L +A  +     L   LL  SA             TALH AA  G A          
Sbjct: 10  DTALHLAVIHQHEPFLDF-LLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 122 --------------------NVVDVVRLLLSAGADPDCVDANGHHP 147
                                      +LL          ++ +  
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 6e-05
 Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 3/36 (8%)

Query: 107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDA 142
           D  TALH A           +  LL   A  + +D 
Sbjct: 8   DGDTALHLAVIHQH---EPFLDFLLGFSAGHEYLDL 40

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 26/169 (15%), Positives = 37/169 (21%), Gaps = 36/169 (21%)

Query: 30  MLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVL 89
            L LA          +L +   S                       P  V +     +  
Sbjct: 81  ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

Query: 90  KLILLHSSADVNVSCGSDRT---------------------------------TALHCAA 116
           +         +        T                                 T LH A 
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200

Query: 117 SGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
              +     V+ LLL AGADP      G  P+   +L P     R +  
Sbjct: 201 EAQA---ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 8e-07
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 32/110 (29%)

Query: 71  SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANV------- 123
               TPL  AA+    ++  + LL   A+ +        TA+H AA+ G+  +       
Sbjct: 101 QNGCTPLHYAASKNRHEIAVM-LLEGGANPDA-KDHYEATAMHRAAAKGNLKMIHILLYY 158

Query: 124 -----------------------VDVVRLLLSAGADPDCVDANGHHPIDV 150
                                  V+  +LL+S GA     +     P+ V
Sbjct: 159 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 33/123 (26%)

Query: 75  TPLMV--AATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGG------------- 119
           + LMV   A  G ++ LK  +L   +        D  TALH A S G             
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKSLAT-RTDQDSRTALHWACSAGHTEIVEFLLQLGV 61

Query: 120 -----------------SANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRA 162
                            SA   ++V+ LL  GA  + V+ NG  P+       + +    
Sbjct: 62  PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 121

Query: 163 ILE 165
           +LE
Sbjct: 122 LLE 124

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGS 120
            PL  A        ++ +L    + +      D    LH + S  +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLL-QKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 8e-06
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
           TPL  A   G  D   L++    A+ ++   +    A   A +        V +  L+  
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYDL-VDNKGAKAEDVALN------EQVKKFFLNNV 226

Query: 135 AD 136
            D
Sbjct: 227 VD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 2/39 (5%)

Query: 110 TALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI 148
             LH A        V    LL S  +     D +G  P+
Sbjct: 2   YPLHQACMENEFFKV--QELLHSKPSLLLQKDQDGRIPL 38

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 58  LWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAAS 117
           L     +     +   R+PL+ A    S+ +++L  L        +     ++ALH A+ 
Sbjct: 129 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL--LLQHGANVNAQMYSGSSALHSASG 186

Query: 118 GGSANVVDVVRLLLSAGADPDCVDANGHHPIDV 150
            G    + +VR L+ +GAD    + +   P+ V
Sbjct: 187 RGL---LPLVRTLVRSGADSSLKNCHNDTPLMV 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 9e-05
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 74  RTPLMVAATYGSVDVLKLIL---LHSSADVNVSCGSDRTTALHCA 115
            TPL +A   G++  +  ++        ++++   + R T LH A
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 68  QMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVV 124
             +    + L  A+  G + +++  L+ S AD ++       T L  A S    +++
Sbjct: 172 AQMYSGSSALHSASGRGLLPLVRT-LVRSGADSSL-KNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 110 TALHCAASGGSANVVDV-VRLLLSAGADPDCVDANGHHPI 148
           T LH A   G+   V   V L    G + D  +     P+
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL 44

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 4e-06
 Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 110 TALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHP 147
             L  AA+ G    ++ +  LL    + +  +  G   
Sbjct: 3   NELASAAARGD---LEQLTSLLQNNVNVNAQNGFGRTA 37

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 110 TALHCAASGGSANVV-DVVRLLLSAGADPDCVDANGHHPI 148
           + LH A       +  +V+R +    A  +  +     P+
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPL 43

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 5/80 (6%)

Query: 59  WYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASG 118
                + + Q     RT L +A    + D++ L+L    ADVN        +        
Sbjct: 131 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNR-VTYQGYSPYQLTWGR 188

Query: 119 GSANVVDVVRLLLSAGADPD 138
            S     + + L     +  
Sbjct: 189 PS---TRIQQQLGQLTLENL 205

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 74  RTPLMVAATYGSVDVLKLI---LLHSSADVNVSCGSDRTTALHCA 115
            + L +A  +    +   +   +    A +N    + + T LH A
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF-QNNLQQTPLHLA 46

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 6/78 (7%)

Query: 75  TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRT-----TALHCAASGGSANVVDVVRL 129
             L  A     +  L L       D+              TALH A        + +V  
Sbjct: 8   HSLCEAVKTRDIFGL-LQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF 66

Query: 130 LLSAGADPDCVDANGHHP 147
           L+    + D     G   
Sbjct: 67  LVQNSGNLDKQTGKGSTA 84

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 19/151 (12%), Positives = 31/151 (20%), Gaps = 45/151 (29%)

Query: 21  AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVA 80
           A+T     S+ E     D+ G  +         +++ L  G             T L +A
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPD--------ETALHLA 52

Query: 81  ATYGSVDVLKLILLHSSADVNVSCG----------------------------------S 106
                   L ++        N+                                      
Sbjct: 53  VRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE 112

Query: 107 DRTTALHCAASGGSANVVDVVRLLLSAGADP 137
              T L  A             LL  A +  
Sbjct: 113 SGETPLDIAKRLKH---EHCEELLTQALSGR 140

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 332 YRTRLCKD---GTSCDRRV-CFFAHTAEELRPL 360
           Y+T LC+      +C     C FAH   ELR L
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELRSL 36

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 8e-04
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 301 PCPDF-RKGACRRGDMCEYAHGVFE 324
            C  F   G C+ G+ C++AHG  E
Sbjct: 8   LCRPFEESGTCKYGEKCQFAHGFHE 32

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 85  SVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVV 124
           +  V+   LL   A++N +      T+LH AA    A+  
Sbjct: 1   TAQVISD-LLAQGAELNATMDKTGETSLHLAARFARADAA 39

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 56  VGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCA 115
           V +             +  TPL +AA  GS +  K  LL + A+  +            A
Sbjct: 139 VNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA-LLDNFANREI-TDHMDRLPRDVA 196

Query: 116 ASGGSANVVDVVRLL 130
           +        D+VRLL
Sbjct: 197 SERLH---HDIVRLL 208

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query: 329 PAQYRTRLCKD---GTSCDRRV-CFFAHTAEELRPL 360
            ++Y+T LC+       C     C FAH   ELR  
Sbjct: 4   SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 39

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 301 PCPDFRK-GACRRGDMCEYAHGVFE 324
            C  + + G CR G  C++AHG+ E
Sbjct: 11  LCRTYSESGRCRYGAKCQFAHGLGE 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	724
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.89
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.87
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.87
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.87
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.86
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.86
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.84
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.83
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.83
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.81
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.8
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.75
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.72
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.53
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.51
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.24
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	97.01
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	96.81
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	96.19
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	87.56
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	87.07

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=9.4e-30  Score=256.87  Aligned_cols=197  Identities=16%  Similarity=0.124  Sum_probs=167.0

Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 004911           20 TAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSAD   99 (724)
Q Consensus        20 ~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD   99 (724)
                      .+.|++|.||||+||..|+.++|++||+ .|++++..+          ..+..|+||||+||..|+.++|++||++ |++
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~-~~a~~~~i~----------~~~~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~   70 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLD----------LQNDLGQTALHLAAILGEASTVEKLYAA-GAG   70 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGG----------CCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccc----------CcCCCCCCccchHHhhcccccccccccc-ccc
Confidence            4678999999999999999999999999 666643321          2268899999999999999999999999 999


Q ss_pred             cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC---------------------------------------------
Q 004911          100 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG---------------------------------------------  134 (724)
Q Consensus       100 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G---------------------------------------------  134 (724)
                      ++.. |.+|.||||+|+..++   .+++++|++.+                                             
T Consensus        71 i~~~-d~~g~tpL~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (255)
T d1oy3d_          71 VLVA-ERGGHTALHLACRVRA---HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED  146 (255)
T ss_dssp             SSCC-CTTSCCHHHHHTTTTC---HHHHHHHSSSCCSSCCCC-----------------------------------CCC
T ss_pred             cccc-ccccchhhhhhhccCc---hHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhh
Confidence            9998 9999999999999999   89999887543                                             


Q ss_pred             --CCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchh
Q 004911          135 --ADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSP  212 (724)
Q Consensus       135 --Ad~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiV  212 (724)
                        .+++.+|.+|.||||+|+..++.++++.|++.    ++.              .....+..|.||||+|+..|+.+++
T Consensus       147 ~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~----~~~--------------~~~~~~~~g~TpL~~A~~~~~~~~v  208 (255)
T d1oy3d_         147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA----GAD--------------LNKPEPTCGRTPLHLAVEAQAASVL  208 (255)
T ss_dssp             GGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----TCC--------------TTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cCcccccccccCcccccccccccccccccchhcc----ccc--------------ccccccccccccccccccccHHHHH
Confidence              23345678899999999999999999888775    211              1234467899999999999999996


Q ss_pred             hhh----cCCCccccCCCCccccccccCCCCCCCCCCccccc
Q 004911          213 SRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNS  250 (724)
Q Consensus       213 e~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~  250 (724)
                      +.|    ++++.++..|.||||+|+..++.++++.|++.|++
T Consensus       209 ~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            654    56778899999999999999999999999999985

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-28  Score=244.99  Aligned_cols=187  Identities=22%  Similarity=0.221  Sum_probs=113.4

Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911           16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH   95 (724)
Q Consensus        16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~   95 (724)
                      +..++..|.+|+||||+||..|+.+++++|++ .+......             +..+.++++.|+..|+.+++++||++
T Consensus        27 ~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~i~~~Ll~~   92 (223)
T d1uoha_          27 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDK-------------DDAGWSPLHIAASAGRDEIVKALLGK   92 (223)
T ss_dssp             GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCSCCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCcCcCcCCCCCCHHHHHHHhhhhcccccccc-cccccccc-------------cccccccccccccccccchhHHHhcc
Confidence            33455566666666666666666666666666 33333322             24556666666666666666666666


Q ss_pred             CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCch
Q 004911           96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV  175 (724)
Q Consensus        96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~  175 (724)
                       |++++.. |.+|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+..++.++++.+++    .+    
T Consensus        93 -~~d~~~~-d~~g~tpL~~A~~~~~---~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~----~~----  159 (223)
T d1uoha_          93 -GAQVNAV-NQNGCTPLHYAASKNR---HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY----YK----  159 (223)
T ss_dssp             -TCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TT----
T ss_pred             -CceeEee-CCCCCchhhHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcc----cc----
Confidence             6666666 6666666666666666   666666666666666666666666666666666665554433    22    


Q ss_pred             hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCC
Q 004911          176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPID  241 (724)
Q Consensus       176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~  241 (724)
                                 .+++..|..|+||||.|+..|+.++|+.|    ++.+.+|..|+||||+|. .|+..++
T Consensus       160 -----------~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~  217 (223)
T d1uoha_         160 -----------ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLIL  217 (223)
T ss_dssp             -----------CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHH
T ss_pred             -----------ceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHH
Confidence                       13455566666666666666666664433    345566666666666653 3444443

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-28  Score=245.37  Aligned_cols=202  Identities=19%  Similarity=0.229  Sum_probs=185.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC
Q 004911           27 FTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGS  106 (724)
Q Consensus        27 ~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~  106 (724)
                      .+.|+.+|..|+++.|+.+|+..+.+++.+             |.+|+||||+||..|+.+++++|+.. +.+.... +.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~-------------D~~G~TpLh~Aa~~g~~e~~~~l~~~-~~~~~~~-~~   68 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRT-------------DQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDK-DD   68 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHH-TCCSCCC-CT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCc-------------CCCCCCHHHHHHHhhhhccccccccc-ccccccc-cc
Confidence            478999999999999999999888888876             79999999999999999999999999 8888887 88


Q ss_pred             CCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccc
Q 004911          107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLT  186 (724)
Q Consensus       107 ~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~  186 (724)
                      .+.+++++|+..|+   .+++++|+++|++++.+|.+|.||||+|+..|+.++++.|++    .|+              
T Consensus        69 ~~~~~~~~~~~~~~---~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~----~g~--------------  127 (223)
T d1uoha_          69 AGWSPLHIAASAGR---DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE----GGA--------------  127 (223)
T ss_dssp             TCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTC--------------
T ss_pred             cccccccccccccc---cchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHH----CCC--------------
Confidence            99999999999999   999999999999999999999999999999999998887776    342              


Q ss_pred             cccCCCCCCCCChhchhHhcCCCchhhh----hcCCCccccCCCCccccccccCCCCCCCCCCccccccccccccccccc
Q 004911          187 VSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSF  262 (724)
Q Consensus       187 ~~in~~d~~G~TPLh~Aa~~G~~eiVe~----Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~f  262 (724)
                       +++..+..|.||||+|+..++.+++++    +.+.+..+..|.||||+|+..|+.++++.|++.|++++..|..|.+++
T Consensus       128 -d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl  206 (223)
T d1uoha_         128 -NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL  206 (223)
T ss_dssp             -CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHH
T ss_pred             -CCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence             456678899999999999999988555    457778999999999999999999999999999999999999999999


Q ss_pred             eee
Q 004911          263 KIR  265 (724)
Q Consensus       263 kV~  265 (724)
                      +++
T Consensus       207 ~~A  209 (223)
T d1uoha_         207 QVA  209 (223)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=6e-27  Score=240.74  Aligned_cols=220  Identities=18%  Similarity=0.170  Sum_probs=186.8

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004911           24 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS  103 (724)
Q Consensus        24 ~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~  103 (724)
                      .++.|+|+.||..|++++|++||+ .|+++|..             |.+|+||||+|+..|+.++|++||++ |++++..
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~-~Gadvn~~-------------d~~G~T~L~~A~~~g~~eiv~~Ll~~-~~~~~~~  102 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLE-RGADINYA-------------NVDGLTALHQACIDDNVDMVKFLVEN-GANINQP  102 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCB-------------CTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHH-CCCCCCcc-------------CCCCCcHHHHHHhcCCceeeeeeccc-ccccccc
Confidence            456799999999999999999999 78999987             68999999999999999999999999 9999888


Q ss_pred             cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccc--
Q 004911          104 CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGA--  181 (724)
Q Consensus       104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~--  181 (724)
                       +..+.||||+|+..++   .++++.|+++|+..+..|..|.+++++|+..+..+.++.++....   ..........  
T Consensus       103 -~~~~~~~L~~a~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~---~~~~~~~~~~~~  175 (291)
T d1s70b_         103 -DNEGWIPLHAAASCGY---LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG---VDIEAARKEEER  175 (291)
T ss_dssp             -CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHT---CCHHHHHHHHHH
T ss_pred             -cccccccccccccccc---cchhhcccccCcccccccccCccccccccccccchhccccccccc---cccccccccccc
Confidence             8999999999999999   999999999999999999999999999999888888877775321   1100000000  


Q ss_pred             ---------ccccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCccc
Q 004911          182 ---------EHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDIK  248 (724)
Q Consensus       182 ---------~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~g  248 (724)
                               ...........+..|.||||.|+..|+.++++.|+    +++.++..|.||||+|+..|+.++++.|++.|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~G  255 (291)
T d1s70b_         176 IMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL  255 (291)
T ss_dssp             HHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence                     00011234456788999999999999999966655    55678889999999999999999999999999


Q ss_pred             cccccccccccccceee
Q 004911          249 NSIYATDEFRMFSFKIR  265 (724)
Q Consensus       249 a~i~~~D~~g~~~fkV~  265 (724)
                      ++++..|..|.++++++
T Consensus       256 adv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         256 CDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             CCTTCCCTTSCCTTTSC
T ss_pred             CCCCCcCCCCCCHHHHH
Confidence            99999999999999987

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.7e-27  Score=238.69  Aligned_cols=193  Identities=17%  Similarity=0.108  Sum_probs=159.4

Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC---cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCC
Q 004911           68 QMVSEHRTPLMVAATYGSVDVLKLILLHSSAD---VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG  144 (724)
Q Consensus        68 ~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD---VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G  144 (724)
                      .++.+|+||||+||.+|+.++|++||++ |++   +|.. +..|.||||+||..|+   .++|++||++|++++..|.+|
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~-~a~~~~i~~~-~~~g~TpL~~A~~~g~---~~iv~~Ll~~ga~i~~~d~~g   78 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQ-NDLGQTALHLAAILGE---ASTVEKLYAAGAGVLVAERGG   78 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSCCCTTS
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCc-CCCCCCccchHHhhcc---ccccccccccccccccccccc
Confidence            3578999999999999999999999998 888   6666 8899999999999999   999999999999999999999


Q ss_pred             CcHHHHHhcCCCHHHHHHHHHHHHcCCCCch-------------------hh---------hcccccccccccCCCCCCC
Q 004911          145 HHPIDVIVLPPKLDSMRAILEEVFGSKNSSV-------------------VV---------ASGAEHNLTVSIGSSNSDY  196 (724)
Q Consensus       145 ~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~-------------------~~---------aa~~~~~l~~~in~~d~~G  196 (724)
                      .||||+|+..++.++++.+++..........                   ..         ...........++.+|.+|
T Consensus        79 ~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g  158 (255)
T d1oy3d_          79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (255)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             chhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccC
Confidence            9999999999999988887653211110000                   00         0000111224677889999


Q ss_pred             CChhchhHhcCCCchhhhhcCC----C-ccccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          197 SSPLLTASASGSPPSPSRLVSS----P-MALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       197 ~TPLh~Aa~~G~~eiVe~Lad~----~-a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      .||||+|+..++.+++++|++.    + ..+..|.||||+|+..++.++++.|++.|++++.+|+.|.++++.+
T Consensus       159 ~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A  232 (255)
T d1oy3d_         159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA  232 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999998888743    3 3456799999999999999999999999999999999999999885

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-26  Score=248.06  Aligned_cols=223  Identities=24%  Similarity=0.250  Sum_probs=170.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC
Q 004911           27 FTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGS  106 (724)
Q Consensus        27 ~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~  106 (724)
                      .||||+||..|++++|++||+ .|+++|..             |..|+||||+||..|+.++|++||++ |+|+|.. +.
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~-~g~~in~~-------------d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~-~~   64 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQ-RGASPNVS-------------NVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAK-AK   64 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH-TTCCSCCS-------------SSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CT
T ss_pred             CChHHHHHHCcCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCC-CC
Confidence            499999999999999999999 79999987             68999999999999999999999999 9999999 99


Q ss_pred             CCCcHHHHHHhCCCCC---------------------------------------------------------------H
Q 004911          107 DRTTALHCAASGGSAN---------------------------------------------------------------V  123 (724)
Q Consensus       107 ~G~TPLH~Aa~~G~~~---------------------------------------------------------------~  123 (724)
                      +|.||||+|+..|+..                                                               .
T Consensus        65 ~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~  144 (408)
T d1n11a_          65 DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK  144 (408)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCC
Confidence            9999999998877620                                                               1


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcC-----------------------------C---
Q 004911          124 VDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGS-----------------------------K---  171 (724)
Q Consensus       124 ~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~-----------------------------g---  171 (724)
                      .++|++|+++|++++..+.+|.+|||+|+..|+.++++.|++.....                             .   
T Consensus       145 ~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~  224 (408)
T d1n11a_         145 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA  224 (408)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccc
Confidence            56788899999999999999999999999999999888877532110                             0   


Q ss_pred             -------CCchhhhccccc--------ccc---------------------------------cccCCCCCCCCChhchh
Q 004911          172 -------NSSVVVASGAEH--------NLT---------------------------------VSIGSSNSDYSSPLLTA  203 (724)
Q Consensus       172 -------a~~~~~aa~~~~--------~l~---------------------------------~~in~~d~~G~TPLh~A  203 (724)
                             .++.+.++....        ...                                 .+++..+..+.||||.+
T Consensus       225 ~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~  304 (408)
T d1n11a_         225 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA  304 (408)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHH
T ss_pred             cccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhh
Confidence                   001111000000        000                                 12233344445555555


Q ss_pred             HhcCCCch----hhhhcCCCccccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          204 SASGSPPS----PSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       204 a~~G~~ei----Ve~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      +..++.++    ++.+++.+.++..|.||||+|+..|+.++++.|++.|++++..|..|.++++.+
T Consensus       305 ~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         305 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             HHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             cccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            55555544    233445667888899999999999999999999999999999999999988876

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.4e-26  Score=232.37  Aligned_cols=212  Identities=18%  Similarity=0.183  Sum_probs=159.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc-
Q 004911           25 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS-  103 (724)
Q Consensus        25 ~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~-  103 (724)
                      ++.|+||.|++.|++++|++||+ .|++||...            +..|+||||+||.+|+.++|++|++. +.+++.. 
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~-~G~din~~~------------~~~g~tpL~~A~~~~~~eiv~~L~~~-~~~~~~~~   69 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQE------------EEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRK   69 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCC------------TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCC
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHH-CCCCcCccC------------CCCCCCHHHHHHHcCCHHHhhhhccc-cccccccc
Confidence            35799999999999999999999 899998763            46799999999999999999999987 6554332 


Q ss_pred             -------------------------------cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCC----------CC
Q 004911          104 -------------------------------CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCV----------DA  142 (724)
Q Consensus       104 -------------------------------~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~----------D~  142 (724)
                                                     .+..+.|+|++|+..++   ..+++.++....+++..          +.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (285)
T d1wdya_          70 KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK---VKALKFLYKRGANVNLRRKTKEDQERLRK  146 (285)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCCCHHHHHTTC
T ss_pred             cccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcc---hhhhhhhhhhcccccccccchhhhhhhcc
Confidence                                           14456677777777777   77777777776665543          24


Q ss_pred             CCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhc------------ccccc----------cccccCCCCCCCCChh
Q 004911          143 NGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVAS------------GAEHN----------LTVSIGSSNSDYSSPL  200 (724)
Q Consensus       143 ~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa------------~~~~~----------l~~~in~~d~~G~TPL  200 (724)
                      .|.||||+|+..|+.++++.|++.   .|++......            .....          ...+++.++..|.|||
T Consensus       147 ~g~t~L~~A~~~~~~~~~~~Ll~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L  223 (285)
T d1wdya_         147 GGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL  223 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhc---cCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCcc
Confidence            577888888887777777776653   1111110000            00000          0125677889999999


Q ss_pred             chhHhcCCCchhhhh-----cCCCccccCCCCccccccccCCCCCCCCCCccccccccccc
Q 004911          201 LTASASGSPPSPSRL-----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDE  256 (724)
Q Consensus       201 h~Aa~~G~~eiVe~L-----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~  256 (724)
                      |+|+..|+.++|+++     ++++..+..|.||||+|+..+++++++.|++.|+++++.|-
T Consensus       224 ~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             chhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            999999999996655     46668888999999999999999999999999999998873

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.9e-26  Score=225.06  Aligned_cols=202  Identities=16%  Similarity=0.144  Sum_probs=174.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc--cC
Q 004911           28 TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS--CG  105 (724)
Q Consensus        28 TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~--~d  105 (724)
                      ||||+||..|++++|+.||+..+.+++.+             |.+|+||||+||..|+.++|++||++ |++++..  .+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~-------------d~~G~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~   67 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQK-------------DQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPD   67 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHTT-CTTCCGGGCCC
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCccccc-------------CCCCCCHHHHHHHcCCccccchhhhh-hcccccccccc
Confidence            79999999999999999999878888876             68999999999999999999999999 9998753  26


Q ss_pred             CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCC--CCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccc
Q 004911          106 SDRTTALHCAASGGSANVVDVVRLLLSAGADP--DCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEH  183 (724)
Q Consensus       106 ~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~--n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~  183 (724)
                      ..|.||+|+|+..+.   .++++.++..+++.  ...+..+.|+++.++..++.++++.+++.    +.           
T Consensus        68 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~----~~-----------  129 (229)
T d1ixva_          68 DSGWTPFHIACSVGN---LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN----GA-----------  129 (229)
T ss_dssp             TTSCCHHHHHHHHTC---HHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TC-----------
T ss_pred             ccccccccccccccc---cccccccccccccccccccccccccccccccccchhhhhhhhhhh----cc-----------
Confidence            789999999999999   99999999988755  44677889999999999998888776653    21           


Q ss_pred             ccccccCCCCCCCCChhchhHhcCCCchhhhhcCC-----CccccCCCCccccccccCCCCCCCCCCc-ccccccccccc
Q 004911          184 NLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS-----PMALKFNDVSFGTGAEKREYPIDPSLPD-IKNSIYATDEF  257 (724)
Q Consensus       184 ~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~-----~a~~~~g~TpLh~Aa~~g~~~i~~~L~d-~ga~i~~~D~~  257 (724)
                          ..+..|..|+||||+|+..|+.++++.|+..     +..+..|.||||+|+..++.++++.|++ .|++++..|+.
T Consensus       130 ----~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~  205 (229)
T d1ixva_         130 ----SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK  205 (229)
T ss_dssp             ----CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTT
T ss_pred             ----cccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCC
Confidence                3445678899999999999999998887654     4677889999999999999999999986 58999999999


Q ss_pred             ccccceee
Q 004911          258 RMFSFKIR  265 (724)
Q Consensus       258 g~~~fkV~  265 (724)
                      |.++++++
T Consensus       206 g~t~l~~A  213 (229)
T d1ixva_         206 GAKAEDVA  213 (229)
T ss_dssp             SCCTGGGC
T ss_pred             CCCHHHHH
Confidence            99998876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=4.8e-26  Score=231.16  Aligned_cols=234  Identities=15%  Similarity=0.121  Sum_probs=181.5

Q ss_pred             CCCCCCccccccCCCCCCCC-CCCchHHHHHHHcCCHHHHHHHHhc-------CCCCccccccccccccCCcccCCCCCh
Q 004911            4 GPDKSESNTEDMNNNSTAET-EDSFTSMLELASNNDVEGFKRMLER-------DPSSVDEVGLWYGRVNGSKQMVSEHRT   75 (724)
Q Consensus         4 gs~~~~~~~~~m~~di~~~d-~~g~TpLh~AA~~G~le~Vk~LLe~-------~gadIn~~gl~~a~~~g~~~~d~~G~T   75 (724)
                      |++..+..+...+  ++..+ ++|.||||+||..|+.++|+.||..       .|++||..             |.+|+|
T Consensus        12 ~~~~~~~~l~~~~--~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~-------------d~~G~T   76 (277)
T d2fo1e1          12 GSYAITEPITRES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-------------DCDENT   76 (277)
T ss_dssp             SSSCCCSCCSTTT--TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-------------CTTSCC
T ss_pred             CCHHHHHHHHhcC--CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcccc-------------CCCCCe
Confidence            3443333333333  44444 5699999999999999999887532       68899887             689999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC---CCCCCCCCCCCcHHHHHh
Q 004911           76 PLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG---ADPDCVDANGHHPIDVIV  152 (724)
Q Consensus        76 PLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G---Ad~n~~D~~G~TPLhlAa  152 (724)
                      |||+||.+|+.++|++||++ |+|+|.. +.+|.||||+|+..++   .+++++++..+   ..++..+..+.++.+++.
T Consensus        77 pLh~A~~~g~~~iv~~Ll~~-Gad~n~~-~~~g~t~l~~a~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  151 (277)
T d2fo1e1          77 PLMLAVLARRRRLVAYLMKA-GADPTIY-NKSERSALHQAAANRD---FGMMVYMLNSTKLKGDIEELDRNGMTALMIVA  151 (277)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTCCCHHHHHHHTTC---HHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred             eecccccccccccccccccc-ccccccc-cccccccccchhhhcc---hhhhhhhhhcccccccccccccccchhHHHHH
Confidence            99999999999999999999 9999999 9999999999999999   99999998774   577888999999999999


Q ss_pred             cCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh-----cCCCccccCCCC
Q 004911          153 LPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL-----VSSPMALKFNDV  227 (724)
Q Consensus       153 ~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L-----ad~~a~~~~g~T  227 (724)
                      ..+..+....+........ .       .........+..+..|.||||+++..++.++++.+     .+.+..+..|.|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~t  223 (277)
T d2fo1e1         152 HNEGRDQVASAKLLVEKGA-K-------VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT  223 (277)
T ss_dssp             HSCSTTHHHHHHHHHHHTC-C-------SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             hcccccccccccccccccc-c-------ccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCC
Confidence            8776554433222111111 0       11122234556678889999999999888775443     355677888999


Q ss_pred             ccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911          228 SFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       228 pLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      |||+|+..|++++++.|++.|++++..|..|.++++.+
T Consensus       224 pL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A  261 (277)
T d2fo1e1         224 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA  261 (277)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHH
Confidence            99999999999999999999999999999998888876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-25  Score=223.00  Aligned_cols=186  Identities=15%  Similarity=0.136  Sum_probs=156.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhc---CCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911           25 DSFTSMLELASNNDVEGFKRMLER---DPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN  101 (724)
Q Consensus        25 ~g~TpLh~AA~~G~le~Vk~LLe~---~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN  101 (724)
                      +|.||||+|+..|+.++++.||+.   .+++||..             |.+|+||||+||..|+.+++++|+++ |+|++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~-------------d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~   66 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-------------NNLQQTPLHLAVITNQPEIAEALLGA-GCDPE   66 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-------------CTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccC-------------CCCCCccccccccccccccccccccc-ccccc
Confidence            689999999999997666655442   67788876             68999999999999999999999999 99999


Q ss_pred             cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCC------CCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCch
Q 004911          102 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC------VDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV  175 (724)
Q Consensus       102 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~------~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~  175 (724)
                      .. +..|.||||+|+..|+   .+++++|++.+.+...      ....|.||||+|+..++.+.++.+++.    +.   
T Consensus        67 ~~-d~~g~t~l~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~----~~---  135 (221)
T d1iknd_          67 LR-DFRGNTPLHLACEQGC---LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL----GA---  135 (221)
T ss_dssp             CC-CTTCCCHHHHHHHHTC---HHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH----TC---
T ss_pred             cc-cccccccccccccccc---ccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeeccc----Cc---
Confidence            98 9999999999999999   9999999998766433      345789999999999999998877764    21   


Q ss_pred             hhhcccccccccccC-CCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCcc
Q 004911          176 VVASGAEHNLTVSIG-SSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDI  247 (724)
Q Consensus       176 ~~aa~~~~~l~~~in-~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~  247 (724)
                                  .++ ..+.+|.||||+|+..|+.+++++|+    |+++++..|.||||+|+..+..++++.|...
T Consensus       136 ------------~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         136 ------------DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             ------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             ------------ccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence                        122 23567999999999999999966654    6778899999999999999998888777554

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-24  Score=202.40  Aligned_cols=152  Identities=24%  Similarity=0.319  Sum_probs=138.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC
Q 004911           28 TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSD  107 (724)
Q Consensus        28 TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~  107 (724)
                      +.|+.||..|++++|+.||+..++++|..             |..|+||||+|+ +|+.++|++||++ +++++.. +..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~-------------d~~g~t~L~~A~-~~~~~~v~~Ll~~-~~~~~~~-~~~   67 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDAL-------------NRFGKTALQVMM-FGSTAIALELLKQ-GASPNVQ-DTS   67 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCC-------------CTTSCCHHHHSC-TTCHHHHHHHHHT-TCCTTCC-CTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCcc-------------CCCCCccccccc-ccccccccccccc-ccccccc-ccc
Confidence            46999999999999999999888899887             689999999986 5899999999999 9999998 899


Q ss_pred             CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccccc
Q 004911          108 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTV  187 (724)
Q Consensus       108 G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~  187 (724)
                      |.+||++|+..++   .+++++++++|++++.+|..|+||||+|+..|+.+++++|++     |+               
T Consensus        68 ~~~~l~~~~~~~~---~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~-----~~---------------  124 (156)
T d1bd8a_          68 GTSPVHDAARTGF---LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-----ES---------------  124 (156)
T ss_dssp             SCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-----TS---------------
T ss_pred             ccccccccccccc---ccccccccccccccccccCCCCeeeccccccccccccccccc-----cc---------------
Confidence            9999999999999   999999999999999999999999999999999988875543     32               


Q ss_pred             ccCCCCCCCCChhchhHhcCCCchhhhhcCC
Q 004911          188 SIGSSNSDYSSPLLTASASGSPPSPSRLVSS  218 (724)
Q Consensus       188 ~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~  218 (724)
                      +++..|.+|.||||+|+..|+.+++++|++.
T Consensus       125 ~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         125 DLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            4667899999999999999999999998864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.7e-24  Score=200.20  Aligned_cols=154  Identities=20%  Similarity=0.285  Sum_probs=141.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC
Q 004911           28 TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSD  107 (724)
Q Consensus        28 TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~  107 (724)
                      ++||+||..|++++|+.||+ .|+++|..             |.+|+||||+|+ .|+.+++++||++ |++++.. +..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~-~g~d~n~~-------------d~~g~TpL~~A~-~~~~ei~~~Ll~~-~a~~~~~-~~~   65 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ-NNVNVNAQ-------------NGFGRTALQVMK-LGNPEIARRLLLR-GANPDLK-DRT   65 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT-SCCCTTCC-------------CTTSCCHHHHCC-SSCHHHHHHHHHT-TCCTTCC-CTT
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCcCcc-------------CCcccccccccc-ccccccccccccc-ccccccc-ccc
Confidence            79999999999999999999 79999887             689999999886 7999999999999 9999999 999


Q ss_pred             CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccccc
Q 004911          108 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTV  187 (724)
Q Consensus       108 G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~  187 (724)
                      |.|+|+.++..++   .+++++|++.+.+++..|..|.+|||+|+..++.++++.|++.    ++              .
T Consensus        66 ~~~~l~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~----~~--------------~  124 (156)
T d1ihba_          66 GFAVIHDAARAGF---LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH----TA--------------S  124 (156)
T ss_dssp             SCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----SC--------------C
T ss_pred             Ccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccc----cc--------------c
Confidence            9999999999999   9999999999999999999999999999999999999888774    21              1


Q ss_pred             ccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911          188 SIGSSNSDYSSPLLTASASGSPPSPSRLVSSP  219 (724)
Q Consensus       188 ~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~  219 (724)
                      +++.+|..|.||||+|+..|+.+++++|++.+
T Consensus       125 ~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         125 NVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            45677899999999999999999999987653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.9e-24  Score=214.08  Aligned_cols=202  Identities=13%  Similarity=0.085  Sum_probs=169.2

Q ss_pred             cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911           13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI   92 (724)
Q Consensus        13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL   92 (724)
                      ...+.+++..|.+|.||||+|+..|+.++|++||+ .|++++...          ..+..|.||+|+|+..+..++++.+
T Consensus        21 ~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~   89 (229)
T d1ixva_          21 HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDD----------YPDDSGWTPFHIACSVGNLEVVKSL   89 (229)
T ss_dssp             HHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHT-TCTTCCGGG----------CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HcCCCcccccCCCCCCHHHHHHHcCCccccchhhh-hhccccccc----------ccccccccccccccccccccccccc
Confidence            33456788999999999999999999999999999 788887542          2357899999999999999999999


Q ss_pred             HhcCCCCcccc-cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCC
Q 004911           93 LLHSSADVNVS-CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSK  171 (724)
Q Consensus        93 Le~~GADVN~~-~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~g  171 (724)
                      +.. +.+.+.. .+..+.|+|++++..++   .+++++|++.|.+.+..|..|+||||+|+..|+.++++.|++    .+
T Consensus        90 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~----~~  161 (229)
T d1ixva_          90 YDR-PLKPDLNKITNQGVTCLHLAVGKKW---FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG----LG  161 (229)
T ss_dssp             HSS-SSCCCTTCCCTTSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT----TT
T ss_pred             ccc-cccccccccccccccccccccccch---hhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc----cc
Confidence            988 6654332 26789999999999999   999999999999999999999999999999999888876665    23


Q ss_pred             CCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhh-----hcCCCccccCCCCccccccccCCCCCCCCCCc
Q 004911          172 NSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR-----LVSSPMALKFNDVSFGTGAEKREYPIDPSLPD  246 (724)
Q Consensus       172 a~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~-----Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d  246 (724)
                      .              ..++.+|.+|.||||+|+..|+.++|++     ++++++++..|.||||+|+..   .+++.|++
T Consensus       162 ~--------------~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~---~~~~~Ll~  224 (229)
T d1ixva_         162 K--------------SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  224 (229)
T ss_dssp             C--------------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH---HHHHHHHH
T ss_pred             c--------------ccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH---HHHHHHHH
Confidence            1              1567789999999999999999998555     456778999999999999854   45566666


Q ss_pred             cccc
Q 004911          247 IKNS  250 (724)
Q Consensus       247 ~ga~  250 (724)
                      .|++
T Consensus       225 ~g~d  228 (229)
T d1ixva_         225 NVVD  228 (229)
T ss_dssp             HCCC
T ss_pred             cCCC
Confidence            6654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.9e-24  Score=229.70  Aligned_cols=222  Identities=18%  Similarity=0.212  Sum_probs=183.3

Q ss_pred             cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccc--------------------cccccccCCcccCCC
Q 004911           13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVG--------------------LWYGRVNGSKQMVSE   72 (724)
Q Consensus        13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~g--------------------l~~a~~~g~~~~d~~   72 (724)
                      .+.+.+++..+.+|.+|||.|+..|+++++++|++ .|++++...                    .+..........+..
T Consensus       152 l~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  230 (408)
T d1n11a_         152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ  230 (408)
T ss_dssp             HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGG-GTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHh-cCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCC
Confidence            34577788899999999999999999999999999 677777543                    112223333445678


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHh
Q 004911           73 HRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIV  152 (724)
Q Consensus        73 G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa  152 (724)
                      |.||||+|+..++.+++++++.. +.+++.. +..|.||||+|+..++   .+++++|+++|++++..+..+.||||.++
T Consensus       231 ~~t~l~~a~~~~~~~~~~~~~~~-~~~~~~~-~~~g~~~l~~a~~~~~---~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~  305 (408)
T d1n11a_         231 GVTPLHLAAQEGHAEMVALLLSK-QANGNLG-NKSGLTPLHLVAQEGH---VPVADVLIKHGVMVDATTRMGYTPLHVAS  305 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTT-TCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCSSCCCHHHHHH
T ss_pred             CCCHHHHHHHhCcHhHhhhhhcc-ccccccc-cCCCCChhhhhhhcCc---HHHHHHHHHCCCccccccccccccchhhc
Confidence            89999999999999999999998 8999988 8999999999999999   99999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhh----hcCCCccccCCCCc
Q 004911          153 LPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKFNDVS  228 (724)
Q Consensus       153 ~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~----Lad~~a~~~~g~Tp  228 (724)
                      ..++.++++.+++    .|+               +++.+|.+|.||||+|++.|+.++|++    |+++++++..|.||
T Consensus       306 ~~~~~~~~~~ll~----~g~---------------~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~  366 (408)
T d1n11a_         306 HYGNIKLVKFLLQ----HQA---------------DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP  366 (408)
T ss_dssp             HSSCSHHHHHHHH----TTC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCH
T ss_pred             ccCcceeeeeecc----ccc---------------cccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            9999888876665    342               577889999999999999999998555    55777889999999


Q ss_pred             cccccccCCCCCCCCC---Ccccccccccccccc
Q 004911          229 FGTGAEKREYPIDPSL---PDIKNSIYATDEFRM  259 (724)
Q Consensus       229 Lh~Aa~~g~~~i~~~L---~d~ga~i~~~D~~g~  259 (724)
                      ||+|+..|++++++.|   .+.++.+...|..++
T Consensus       367 L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~  400 (408)
T d1n11a_         367 LAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRM  400 (408)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCCCSSCC----CCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHhccccccccccccC
Confidence            9999999999988755   566666666665443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=5.5e-23  Score=191.47  Aligned_cols=151  Identities=17%  Similarity=0.216  Sum_probs=135.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004911           26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG  105 (724)
Q Consensus        26 g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d  105 (724)
                      ..||||.||+.|++++|++||+ .|++++.              +..|+||||+|+..++.+++++++.. ....+.. +
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~-~ga~~~~--------------~~~g~t~L~~a~~~~~~~~~~~~~~~-~~~~~~~-~   64 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMA-NGAPFTT--------------DWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDAR-T   64 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH-HTCCCCC--------------CTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC-C
T ss_pred             CCHHHHHHHHCCCHHHHHHHHH-cCCCccc--------------ccCCCccccccccccccccccccccc-ccccccc-c
Confidence            3499999999999999999999 6777763              57899999999999999999999998 6766666 7


Q ss_pred             CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccc
Q 004911          106 SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNL  185 (724)
Q Consensus       106 ~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l  185 (724)
                      ..+.++++.++...+   .+++++|+.+|++++.+|.+|+||||+|+..|+.++++.|++    .|+             
T Consensus        65 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~----~ga-------------  124 (153)
T d1awcb_          65 KVDRTPLHMAASEGH---ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK----YGA-------------  124 (153)
T ss_dssp             TTCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC-------------
T ss_pred             ccccccccccccccc---ceeeecccccCCccccccccCchHHHhhhhcchhheeeeccc----ccc-------------
Confidence            889999999999999   999999999999999999999999999999999998887765    343             


Q ss_pred             ccccCCCCCCCCChhchhHhcCCCchhhhh
Q 004911          186 TVSIGSSNSDYSSPLLTASASGSPPSPSRL  215 (724)
Q Consensus       186 ~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L  215 (724)
                        +++..|.+|.||||+|+.+|+.+++++|
T Consensus       125 --d~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         125 --DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             --CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             --CCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence              5677899999999999999999998765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.7e-23  Score=200.18  Aligned_cols=206  Identities=16%  Similarity=0.146  Sum_probs=141.7

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHh---cCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 004911           24 EDSFTSMLELASNNDVEGFKRMLE---RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADV  100 (724)
Q Consensus        24 ~~g~TpLh~AA~~G~le~Vk~LLe---~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADV  100 (724)
                      ++|.||||+||..|++++|+.||+   ..|+++|..             |.+|+||||+||..|+.++|++||++ |+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~-------------d~~g~TpL~~A~~~~~~~iv~~Ll~~-ga~~   66 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-------------NNLRQTPLHLAVITTLPSVVRLLVTA-GASP   66 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCcc-------------CCCCCccceehhcccccccccccccc-cccc
Confidence            479999999999999999999986   378888877             68999999999999999999999999 9999


Q ss_pred             ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC----CCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchh
Q 004911          101 NVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG----ADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVV  176 (724)
Q Consensus       101 N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G----Ad~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~  176 (724)
                      +.. ...|.++++.|...++   .++++.+....    ...+.......++|+.+.........+.+...    ...   
T Consensus        67 ~~~-~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~----~~~---  135 (228)
T d1k1aa_          67 MAL-DRHGQTAAHLACEHRS---PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER----GAD---  135 (228)
T ss_dssp             TCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCC---
T ss_pred             ccc-cccccccccccccccc---ccchhhhhhccccccccccccccccccccccccccccchhhhhhhcc----ccc---
Confidence            998 8899999999999998   77777776643    22344455666777777666555544443331    100   


Q ss_pred             hhcccccccccccCCCCCCCCChhchhHhcCCCchhhh----hcCCCccccCCCCccccccccCCCCCCCCCCccccccc
Q 004911          177 VASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIY  252 (724)
Q Consensus       177 ~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~----Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~  252 (724)
                                 .....+..|.++|+.|+..+...+++.    +.+.+.++..|.||||+|+..|+.++++.|++.|++++
T Consensus       136 -----------~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n  204 (228)
T d1k1aa_         136 -----------IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS  204 (228)
T ss_dssp             -----------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             -----------cccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC
Confidence                       111223445566666665555555332    23344455555666666666666666666666666666


Q ss_pred             cccccccccceee
Q 004911          253 ATDEFRMFSFKIR  265 (724)
Q Consensus       253 ~~D~~g~~~fkV~  265 (724)
                      ..|..|.++++++
T Consensus       205 ~~d~~G~TpL~~A  217 (228)
T d1k1aa_         205 LKNCHNDTPLMVA  217 (228)
T ss_dssp             CCCTTSCCTTTTC
T ss_pred             CCCCCCCCHHHHH
Confidence            5555565555554

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.3e-23  Score=190.47  Aligned_cols=120  Identities=31%  Similarity=0.357  Sum_probs=110.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 004911           25 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC  104 (724)
Q Consensus        25 ~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~  104 (724)
                      .+.++||+||..|++++|++||+ .|+++|..             +.+|.||||+|+ .|+.++|++||++ |+++|.. 
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~-~gad~n~~-------------~~~g~t~l~~a~-~g~~~~v~~Ll~~-ga~~~~~-   64 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLE-AGANPNAP-------------NSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCA-   64 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCC-------------CSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCC-
T ss_pred             CChhHHHHHHHCCCHHHHHHHHH-cCCccccc-------------cccccccccccc-ccccccccccccc-ccccccc-
Confidence            45689999999999999999999 78999887             589999999764 7999999999999 9999999 


Q ss_pred             CCCC-CcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHH
Q 004911          105 GSDR-TTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAIL  164 (724)
Q Consensus       105 d~~G-~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LL  164 (724)
                      +..| .||||+|+..|+   .++|++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        65 ~~~~~~~~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          65 DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             CTTTCCCHHHHHHHHTC---HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccccc---ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6655 579999999999   99999999999999999999999999999999999998765

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=7e-24  Score=192.17  Aligned_cols=108  Identities=28%  Similarity=0.420  Sum_probs=103.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC
Q 004911           27 FTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGS  106 (724)
Q Consensus        27 ~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~  106 (724)
                      .|||++|+..|++++|++||+ .|++++..             +.+|+||||+||.+|+.+++++|+++ |+|+|.+ |.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~-~g~d~n~~-------------~~~g~t~lh~A~~~~~~~~~~~ll~~-g~din~~-d~   66 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVA-KGEDVNRT-------------LEGGRKPLHYAADCGQLEILEFLLLK-GADINAP-DK   66 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT-TTCCCCCC-------------SSSSCCTTHHHHHHSTTTHHHHHHHS-SCTTTCC-SS
T ss_pred             ChHHHHHHHCCCHHHHHHHHH-hhhccccc-------------cccccccccccccccccccccccccc-cceeeec-cc
Confidence            389999999999999999999 78999887             58999999999999999999999999 9999999 99


Q ss_pred             CCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhc
Q 004911          107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVL  153 (724)
Q Consensus       107 ~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~  153 (724)
                      +|+||||+|+..|+   .++|++||++|+|++.+|.+|+||||+|..
T Consensus        67 ~g~tpLh~A~~~~~---~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          67 HHITPLLSAVYEGH---VSCVKLLLSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             SCSCHHHHHHTTTC---CHHHHHHHTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             ccccchhhhhhcCc---hhhhhhhhcccccceeeCCCCCCHHHHHhH
Confidence            99999999999999   999999999999999999999999999854

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.3e-22  Score=198.31  Aligned_cols=170  Identities=18%  Similarity=0.153  Sum_probs=147.9

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL   94 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe   94 (724)
                      -+++++..|.+|.||||+||..|+.+++++|++ .|++++..             +..|.||||+|+..|+.+++++|+.
T Consensus        28 ~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~-~g~d~~~~-------------d~~g~t~l~~~~~~~~~~~~~~l~~   93 (221)
T d1iknd_          28 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELR-------------DFRGNTPLHLACEQGCLASVGVLTQ   93 (221)
T ss_dssp             -CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCC-------------CTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCcccCCCCCCcccccccccccccccccccc-cccccccc-------------ccccccccccccccccccccchhhh
Confidence            456789999999999999999999999999999 88998876             6899999999999999999999998


Q ss_pred             cCCCCcccc-----cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHhcCCCHHHHHHHHHHHH
Q 004911           95 HSSADVNVS-----CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPIDVIVLPPKLDSMRAILEEVF  168 (724)
Q Consensus        95 ~~GADVN~~-----~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLhlAa~~G~~eivk~LLe~Ll  168 (724)
                      . +.+....     ...+|.||||+|+..++   .+++++|+..|++++..+ .+|+||||+|+..|+.++++.|++   
T Consensus        94 ~-~~~~~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~---  166 (221)
T d1iknd_          94 S-CTTPHLHSILKATNYNGHTCLHLASIHGY---LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK---  166 (221)
T ss_dssp             S-TTTTSSSCGGGCCCTTCCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT---
T ss_pred             h-cccccccccccccccccchhhhHHhhcCC---hhheeeecccCcccccccccCCCCccccccccccHHHHHHHHh---
Confidence            7 5443221     25678999999999999   999999999999998865 579999999999999988876654   


Q ss_pred             cCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCcc
Q 004911          169 GSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMA  221 (724)
Q Consensus       169 ~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~  221 (724)
                       .|+               +++.+|.+|.||||+|+..++.+++++++.....
T Consensus       167 -~ga---------------d~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         167 -CGA---------------DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             -TTC---------------CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             -cCC---------------cccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence             453               5678899999999999999999999998887643

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.87  E-value=2.7e-22  Score=205.64  Aligned_cols=184  Identities=16%  Similarity=0.242  Sum_probs=157.4

Q ss_pred             cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911           13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI   92 (724)
Q Consensus        13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL   92 (724)
                      .+.++|++..|.+|.||||+|+..|+.++|++||+ .+.+.+..             +..+.||||+|+..|+.+++++|
T Consensus        60 l~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~-~~~~~~~~-------------~~~~~~~L~~a~~~~~~~~~~~l  125 (291)
T d1s70b_          60 LERGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQP-------------DNEGWIPLHAAASCGYLDIAEYL  125 (291)
T ss_dssp             HHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecc-cccccccc-------------cccccccccccccccccchhhcc
Confidence            34678899999999999999999999999999999 67776654             47889999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC-C--------------------------CCCCCCCCCCC
Q 004911           93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA-G--------------------------ADPDCVDANGH  145 (724)
Q Consensus        93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~-G--------------------------Ad~n~~D~~G~  145 (724)
                      +++ |+..+.. +.++.|++++|+..++   .++++.|+.. +                          .+....+..|.
T Consensus       126 ~~~-~~~~~~~-~~~~~~~~~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  200 (291)
T d1s70b_         126 ISQ-GAHVGAV-NSEGDTPLDIAEEEAM---EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG  200 (291)
T ss_dssp             HHT-TCCTTCC-CTTSCCHHHHCCSHHH---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCC
T ss_pred             ccc-Ccccccc-cccCcccccccccccc---chhccccccccccccccccccccccccccchhhhcccccccccccCCCC
Confidence            999 9999998 9999999999998888   7887777753 2                          33455778999


Q ss_pred             cHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhh----hcCCCcc
Q 004911          146 HPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMA  221 (724)
Q Consensus       146 TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~----Lad~~a~  221 (724)
                      ||||+|+..|+.++++.|++    .|+               +++..+.+|+||||+|+..|+.++|+.    |++++++
T Consensus       201 t~L~~a~~~~~~~~~~~Ll~----~g~---------------din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~  261 (291)
T d1s70b_         201 TALHVAAAKGYTEVLKLLIQ----ARY---------------DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV  261 (291)
T ss_dssp             CHHHHHHHHTCHHHHHHHHT----TTC---------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ChhhHHHHcCChhhhccccc----cee---------------cccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            99999999999888776655    443               566788999999999999999999555    4567788


Q ss_pred             ccCCCCccccccc
Q 004911          222 LKFNDVSFGTGAE  234 (724)
Q Consensus       222 ~~~g~TpLh~Aa~  234 (724)
                      |..|.||||+|++
T Consensus       262 d~~G~TaL~~A~e  274 (291)
T d1s70b_         262 NKVGQTAFDVADE  274 (291)
T ss_dssp             CTTSCCTTTSCCS
T ss_pred             CCCCCCHHHHHHH
Confidence            9999999999975

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.6e-22  Score=184.77  Aligned_cols=122  Identities=20%  Similarity=0.262  Sum_probs=112.1

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCC
Q 004911           27 FTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGS  106 (724)
Q Consensus        27 ~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~  106 (724)
                      .+.|+.||..|++++|+.||+ .|+++|..             |.+|+||||+||..|+.+++++||+. |+|+|.. |.
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~-~g~d~n~~-------------d~~g~t~Lh~A~~~~~~~~~~~ll~~-g~~~~~~-d~   65 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIY-EVDDPSLP-------------NDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAA-DS   65 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTS-TTSSCCCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CT
T ss_pred             hHHHHHHHHcCCHHHHHHHHH-cCCCcccc-------------cccccccccccccccccccccccccc-ccccccc-cc
Confidence            478999999999999999999 89999987             68999999999999999999999999 9999999 99


Q ss_pred             CCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCC-CCCcHHHHH--hcCCCHHHHHHHHHHH
Q 004911          107 DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDA-NGHHPIDVI--VLPPKLDSMRAILEEV  167 (724)
Q Consensus       107 ~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~-~G~TPLhlA--a~~G~~eivk~LLe~L  167 (724)
                      +|+||||+|+..|+   .++|++||++||+++..+. .|.||++++  +..|+.+++++|+...
T Consensus        66 ~g~tpLh~A~~~g~---~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          66 DGWTPLHCAASCNN---VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             TCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             cCcccccccchhhH---HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999999999999   9999999999999998775 588888776  4678899999988753

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=6e-25  Score=235.16  Aligned_cols=210  Identities=13%  Similarity=0.010  Sum_probs=154.1

Q ss_pred             CCCCCCCchHHHHHHHcCCHHHHHH---HHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911           20 TAETEDSFTSMLELASNNDVEGFKR---MLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS   96 (724)
Q Consensus        20 ~~~d~~g~TpLh~AA~~G~le~Vk~---LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~   96 (724)
                      +.++.+|.|+||+||.+|+.++++.   |++ .|+++|..             +.+|+||||+||.+|+.++|++||++ 
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~-~~~~in~~-------------~~~g~taL~~Aa~~G~~~~v~~Ll~~-  148 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLT-SDEIVKVI-------------QAENYQAFRLAAENGHLHVLNRLCEL-  148 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC---------------CHHHHHHHHHHHHTTCHHHHHHHHHS-
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHh-CCCccccc-------------CCCCCCHHHHHHHCCCHHHHHHHHHc-
Confidence            4567789999999999999988776   455 89999987             58899999999999999999999999 


Q ss_pred             CCCccccc-CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCC---CCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCC-
Q 004911           97 SADVNVSC-GSDRTTALHCAASGGSANVVDVVRLLLSAGADPD---CVDANGHHPIDVIVLPPKLDSMRAILEEVFGSK-  171 (724)
Q Consensus        97 GADVN~~~-d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n---~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~g-  171 (724)
                      |++++... +.+|+||||+||..|+   .+||++|++.|++..   ..+.+|.||+|.|+..|+.+++++|++...... 
T Consensus       149 g~~~~~~~~~~~g~t~L~~Aa~~g~---~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         149 APTEIMAMIQAENYHAFRLAAENGH---LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY  225 (346)
T ss_dssp             CTTTHHHHHSHHHHHHHHHHHHTTC---HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHH
T ss_pred             CCCccccccccCCCChhHHHHHHhh---HHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcch
Confidence            99998861 2469999999999999   999999999998753   344567889999999999999998876432111 


Q ss_pred             -----CCc-------hhhhcccc-cccccccCCCCC----------------CCCChhchhHhcCCCchhhhhcCCC---
Q 004911          172 -----NSS-------VVVASGAE-HNLTVSIGSSNS----------------DYSSPLLTASASGSPPSPSRLVSSP---  219 (724)
Q Consensus       172 -----a~~-------~~~aa~~~-~~l~~~in~~d~----------------~G~TPLh~Aa~~G~~eiVe~Lad~~---  219 (724)
                           ...       .+...... ......+.....                .+.++|+.|+..|..+++++++..+   
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~  305 (346)
T d2ajaa1         226 AEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK  305 (346)
T ss_dssp             HHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTG
T ss_pred             HHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChh
Confidence                 000       00000000 000000000111                1247888888889888888776533   


Q ss_pred             ------ccccCCCCccccccccCCCCCCCCCCcc
Q 004911          220 ------MALKFNDVSFGTGAEKREYPIDPSLPDI  247 (724)
Q Consensus       220 ------a~~~~g~TpLh~Aa~~g~~~i~~~L~d~  247 (724)
                            ..+.+|+||||+|+++|+.++++.|++.
T Consensus       306 ~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         306 ALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             GGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             hhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence                  3345688999999999999999999876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=1.7e-23  Score=204.14  Aligned_cols=172  Identities=18%  Similarity=0.250  Sum_probs=147.1

Q ss_pred             HHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhC
Q 004911           39 VEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASG  118 (724)
Q Consensus        39 le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~  118 (724)
                      .|+|+.||+ .|+++|...            |.+|+||||+||.+|+.++|++||.. |+++|.. +..+.|+++.++..
T Consensus         2 ~~~v~~Ll~-~g~din~~~------------d~~G~t~L~~A~~~g~~e~v~~Ll~~-g~~~n~~-~~~~~~~~~~~~~~   66 (209)
T d1ot8a_           2 AQVISDLLA-QGAELNATM------------DKTGETSLHLAARFARADAAKRLLDA-GADANSQ-DNTGRTPLHAAVAA   66 (209)
T ss_dssp             HHHHHHHHH-HHHHHHHHH------------HHHCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHT
T ss_pred             HHHHHHHHH-CCCCcCcCc------------CCCCCCHHHHHHHcCCHHHHHHHHhh-ccccccc-cccccccccccccc
Confidence            489999999 889998742            67899999999999999999999999 9999998 88999999998877


Q ss_pred             CCC-------------------------------CHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHH
Q 004911          119 GSA-------------------------------NVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEV  167 (724)
Q Consensus       119 G~~-------------------------------~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~L  167 (724)
                      ++.                               ....+.++|+..+++++.++..|+|||++++..+..++++.+++. 
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~-  145 (209)
T d1ot8a_          67 DAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH-  145 (209)
T ss_dssp             TCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccc-
Confidence            663                               124678889999999999999999999999999998877766663 


Q ss_pred             HcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhh----hcCCCccccCCCCccccccccCCCCCCCC
Q 004911          168 FGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKFNDVSFGTGAEKREYPIDPS  243 (724)
Q Consensus       168 l~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~----Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~  243 (724)
                         +.               +++..|.+|.||||.|+..|+.++++.    +++++..+..|.||||+|+.+|+++++++
T Consensus       146 ---~~---------------~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~l  207 (209)
T d1ot8a_         146 ---HA---------------NRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRL  207 (209)
T ss_dssp             ---TC---------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ---cc---------------cccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhh
Confidence               21               456778999999999999999999555    45667889999999999999999887764


Q ss_pred             C
Q 004911          244 L  244 (724)
Q Consensus       244 L  244 (724)
                      |
T Consensus       208 L  208 (209)
T d1ot8a_         208 L  208 (209)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1e-21  Score=199.65  Aligned_cols=194  Identities=23%  Similarity=0.254  Sum_probs=149.9

Q ss_pred             cccCCCCCCCC-CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccc----------------------------------
Q 004911           13 EDMNNNSTAET-EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVG----------------------------------   57 (724)
Q Consensus        13 ~~m~~di~~~d-~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~g----------------------------------   57 (724)
                      .+.+++++..+ ..|.||||+||..|+.++|+.|++ .+...+...                                  
T Consensus        25 l~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (285)
T d1wdya_          25 LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF  103 (285)
T ss_dssp             HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT
T ss_pred             HHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcc-ccccccccccccchhhHHHhhcCCccccchhhhhccccccccc
Confidence            44577887665 469999999999999999999998 454443221                                  


Q ss_pred             -----cccccccCC------------------------cccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCC
Q 004911           58 -----LWYGRVNGS------------------------KQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDR  108 (724)
Q Consensus        58 -----l~~a~~~g~------------------------~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G  108 (724)
                           +.++...+.                        ...+..|.||||+|+.+|+.+++++||++.|++++.. +..|
T Consensus       104 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~-~~~~  182 (285)
T d1wdya_         104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC-DNMG  182 (285)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC-CTTS
T ss_pred             CCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccc-cCCC
Confidence                 000000000                        0112568999999999999999999998779999998 8999


Q ss_pred             CcHHHHHHhCCCC-CHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccccc
Q 004911          109 TTALHCAASGGSA-NVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTV  187 (724)
Q Consensus       109 ~TPLH~Aa~~G~~-~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~  187 (724)
                      .++++.+...+.. +..+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.   .|               .
T Consensus       183 ~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~---~g---------------~  244 (285)
T d1wdya_         183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EH---------------I  244 (285)
T ss_dssp             CCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SS---------------C
T ss_pred             CcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHc---CC---------------C
Confidence            9988877654432 236799999999999999999999999999999999988877762   23               2


Q ss_pred             ccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccCCC
Q 004911          188 SIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFND  226 (724)
Q Consensus       188 ~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~g~  226 (724)
                      +++..|.+|.||||+|+..|+.+++++|++.|+....++
T Consensus       245 din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            577889999999999999999999777766665544433

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=1e-21  Score=191.39  Aligned_cols=177  Identities=20%  Similarity=0.214  Sum_probs=149.1

Q ss_pred             ccCCCCCC-CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccc---------------------cccccccCCcccCC
Q 004911           14 DMNNNSTA-ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVG---------------------LWYGRVNGSKQMVS   71 (724)
Q Consensus        14 ~m~~di~~-~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~g---------------------l~~a~~~g~~~~d~   71 (724)
                      +.++|++. .|.+|.||||+||..|+.++|++||+ .|+++|..+                     ..............
T Consensus        10 ~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~-~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (209)
T d1ot8a_          10 AQGAELNATMDKTGETSLHLAARFARADAAKRLLD-AGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMH   88 (209)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT
T ss_pred             HCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHh-hccccccccccccccccccccccccccccccccccccccccccc
Confidence            34556666 58899999999999999999999999 788887654                     01111122233346


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 004911           72 EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVI  151 (724)
Q Consensus        72 ~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlA  151 (724)
                      .|.+..+.+.......+.++|+.. +++++.. +..|.||||+|+..+.   .++++.|++++++++..|..|.||||+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~-~~~~~t~l~~~~~~~~---~~~~~~l~~~~~~~~~~d~~g~TpL~~A  163 (209)
T d1ot8a_          89 DGTTPLILAARLAIEGMVEDLITA-DADINAA-DNSGKTALHWAAAVNN---TEAVNILLMHHANRDAQDDKDETPLFLA  163 (209)
T ss_dssp             TCCCHHHHHHHTTCTTHHHHHHHT-TCCTTCB-CTTSCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccccccccccchhhhhhhhhh-ccccccc-CCCCCCcchhhcccCc---ceeeeeeccccccccccccccccccchh
Confidence            678888888888888999999998 9999999 9999999999999999   9999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh
Q 004911          152 VLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL  215 (724)
Q Consensus       152 a~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L  215 (724)
                      +..|+.++++.|++    .|+               +++..|..|.||||+|+..|+.++|++|
T Consensus       164 ~~~g~~~~v~~Ll~----~ga---------------d~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         164 AREGSYEASKALLD----NFA---------------NREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHTTCHHHHHHHHH----TTC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccHHHHHHHHHH----CCC---------------CCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999987776    343               4667889999999999999999999865

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.2e-23  Score=191.72  Aligned_cols=149  Identities=22%  Similarity=0.234  Sum_probs=133.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcC
Q 004911           75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLP  154 (724)
Q Consensus        75 TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~  154 (724)
                      +|||+||..|++++|++||++ |+|+|.+ |.+|.||||+|+ .|+   .+++++||++|++++.++..|.++|+.++..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~-d~~g~TpL~~A~-~~~---~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~   76 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQ-NGFGRTALQVMK-LGN---PEIARRLLLRGANPDLKDRTGFAVIHDAARA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCC-CTTSCCHHHHCC-SSC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCcc-CCcccccccccc-ccc---ccccccccccccccccccccCcccccccccc
Confidence            899999999999999999999 9999999 999999999886 688   9999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc-----CCCccccCCCCcc
Q 004911          155 PKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV-----SSPMALKFNDVSF  229 (724)
Q Consensus       155 G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La-----d~~a~~~~g~TpL  229 (724)
                      ++.++++.+++.    +               ..++..+..|.+|||+|+..++.++++.++     +.+.++..|.|||
T Consensus        77 ~~~~~~~~l~~~----~---------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL  137 (156)
T d1ihba_          77 GFLDTLQTLLEF----Q---------------ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC  137 (156)
T ss_dssp             TCHHHHHHHHHT----T---------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             cccccccccccc----c---------------ccccccccccccccccccccccccccccccccccccccccCCCCCCHH
Confidence            998888877653    2               145667889999999999999999977664     5667888899999


Q ss_pred             ccccccCCCCCCCCCCccc
Q 004911          230 GTGAEKREYPIDPSLPDIK  248 (724)
Q Consensus       230 h~Aa~~g~~~i~~~L~d~g  248 (724)
                      |+|+..++.++++.|++.|
T Consensus       138 ~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         138 DLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHcCCHHHHHHHHhcC
Confidence            9999999999888877654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.85  E-value=8.5e-22  Score=199.43  Aligned_cols=199  Identities=14%  Similarity=0.131  Sum_probs=150.8

Q ss_pred             ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911           14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL   93 (724)
Q Consensus        14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL   93 (724)
                      ..++|+|..|.+|.||||+|+..|+.++|++||+ .|++++..             +.+|.||||+|+..++.+++++++
T Consensus        62 ~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~-~Gad~n~~-------------~~~g~t~l~~a~~~~~~~~~~~l~  127 (277)
T d2fo1e1          62 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIY-------------NKSERSALHQAAANRDFGMMVYML  127 (277)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTCCCHHHHHHHTTCHHHHHHHT
T ss_pred             HcCCCccccCCCCCeeeccccccccccccccccc-cccccccc-------------cccccccccchhhhcchhhhhhhh
Confidence            3578899999999999999999999999999999 79999886             588999999999999999999997


Q ss_pred             hcC--CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCC--------CCCCCCCCCCcHHHHHhcCCCHHHHHHH
Q 004911           94 LHS--SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGA--------DPDCVDANGHHPIDVIVLPPKLDSMRAI  163 (724)
Q Consensus        94 e~~--GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GA--------d~n~~D~~G~TPLhlAa~~G~~eivk~L  163 (724)
                      ...  ...++.. +..+.++.+++...+.......++++.+...        ..+..+..|.||||+++..++.++++.+
T Consensus       128 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~  206 (277)
T d2fo1e1         128 NSTKLKGDIEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL  206 (277)
T ss_dssp             TSHHHHHTTSCC-CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHH
T ss_pred             hccccccccccc-ccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccc
Confidence            751  1355555 7777888888887776544556666655432        2344566788888888888887777655


Q ss_pred             HHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCC
Q 004911          164 LEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYP  239 (724)
Q Consensus       164 Le~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~  239 (724)
                      +..   .+               .+++..|..|.||||+|+..|+.++|++|    ++++++|..|.||||+|+..|+.+
T Consensus       207 l~~---~~---------------~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~  268 (277)
T d2fo1e1         207 VGE---KG---------------SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHN  268 (277)
T ss_dssp             HHH---SC---------------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHH
T ss_pred             ccc---cc---------------ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            432   12               14455677888888888888888774444    466677788888888888888877


Q ss_pred             CCCCCC
Q 004911          240 IDPSLP  245 (724)
Q Consensus       240 i~~~L~  245 (724)
                      +++.|.
T Consensus       269 iv~lL~  274 (277)
T d2fo1e1         269 IVDIFD  274 (277)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766553

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.1e-20  Score=179.57  Aligned_cols=128  Identities=17%  Similarity=0.257  Sum_probs=113.2

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCCcccc
Q 004911           27 FTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVLKLILLHSSADVNVS  103 (724)
Q Consensus        27 ~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evVklLLe~~GADVN~~  103 (724)
                      ...|+.|++.+++..|+.++. .|.+++...       .....+..|+||||+|+..   |+.++|++||++ |+|+|.+
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~-~g~d~~~~~-------~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~   77 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYA-DGVDLTEKI-------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQ   77 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH-TTCCTTSBC-------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHH-cCCCcCCCC-------CcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhh
Confidence            345778999999999999999 788776542       1122356799999999975   689999999999 9999999


Q ss_pred             cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHH
Q 004911          104 CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEV  167 (724)
Q Consensus       104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~L  167 (724)
                       |.+|+||||+||..|+   .++|++||++|++++.+|.+|+||||+|+..|+.++++.|++..
T Consensus        78 -d~~g~TpLh~A~~~~~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          78 -TGKGSTALHYCCLTDN---AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -hhhhcccccccccccc---ccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence             9999999999999999   99999999999999999999999999999999999999888864

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.1e-21  Score=180.59  Aligned_cols=132  Identities=23%  Similarity=0.239  Sum_probs=121.3

Q ss_pred             cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911           13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI   92 (724)
Q Consensus        13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL   92 (724)
                      ...+.+++..|..|.||||.|+ .|+.++|++||+ .+.+++..             +..|.+||+.|+..++.++++++
T Consensus        23 ~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~-~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~~~   87 (156)
T d1bd8a_          23 HRELVHPDALNRFGKTALQVMM-FGSTAIALELLK-QGASPNVQ-------------DTSGTSPVHDAARTGFLDTLKVL   87 (156)
T ss_dssp             HTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HhCCCCCCccCCCCCccccccc-cccccccccccc-cccccccc-------------ccccccccccccccccccccccc
Confidence            3346788999999999999886 589999999999 78888876             47899999999999999999999


Q ss_pred             HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 004911           93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE  165 (724)
Q Consensus        93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe  165 (724)
                      +++ |+++|.. +.+|+||||+|+..|+   .+++++|+ .|++++.+|.+|+||||+|+..|+.++++.|++
T Consensus        88 l~~-~~~~n~~-~~~~~t~L~~A~~~~~---~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          88 VEH-GADVNVP-DGTGALPIHLAVQEGH---TAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHT-TCCSCCC-CTTSCCHHHHHHHHTC---HHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             ccc-ccccccc-cCCCCeeecccccccc---cccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999 9999998 9999999999999999   99999887 799999999999999999999999999988875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.3e-21  Score=177.07  Aligned_cols=121  Identities=22%  Similarity=0.265  Sum_probs=109.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCC-cHHHHH
Q 004911           73 HRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGH-HPIDVI  151 (724)
Q Consensus        73 G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~-TPLhlA  151 (724)
                      +.++||+||..|++++|++||++ |+|+|.. +.+|.||||+|+ .|+   .++|++|+++|++++.+|..|. ||||+|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~-gad~n~~-~~~g~t~l~~a~-~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGS---ARVAELLLLHGAEPNCADPATLTRPVHDA   76 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTC---HHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHc-CCccccc-cccccccccccc-ccc---ccccccccccccccccccccccccccccc
Confidence            56899999999999999999999 9999999 999999999775 688   9999999999999999999876 699999


Q ss_pred             hcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCC
Q 004911          152 VLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS  218 (724)
Q Consensus       152 a~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~  218 (724)
                      +..|+.++++.|++.    |+               +++..|..|.||||+|+..|+.+++++|+..
T Consensus        77 ~~~g~~~~v~~Ll~~----ga---------------~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          77 AREGFLDTLVVLHRA----GA---------------RLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HHHTCHHHHHHHHHH----TC---------------CSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccc----cc---------------ccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999888774    32               5677899999999999999999999998753

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=2.7e-21  Score=174.94  Aligned_cols=107  Identities=22%  Similarity=0.287  Sum_probs=98.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhc
Q 004911           74 RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVL  153 (724)
Q Consensus        74 ~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~  153 (724)
                      .|||++||..|++++|++||++ |+|+|.. +.+|+||||+|+..|+   .+++++|+++|++++.+|..|+||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~-~~~g~t~lh~A~~~~~---~~~~~~ll~~g~din~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLKGADINAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCC-SSSSCCTTHHHHHHST---TTHHHHHHHSSCTTTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhccccc-cccccccccccccccc---cccccccccccceeeecccccccchhhhhh
Confidence            4899999999999999999999 9999999 9999999999999999   999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhH
Q 004911          154 PPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTAS  204 (724)
Q Consensus       154 ~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa  204 (724)
                      .|+.++++.|++    .|+               +++..|.+|.||||+|.
T Consensus        78 ~~~~~~v~~Ll~----~Ga---------------d~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          78 EGHVSCVKLLLS----KGA---------------DKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TTCCHHHHHHHT----TCC---------------CSSSSSSSTCCCCCTCS
T ss_pred             cCchhhhhhhhc----ccc---------------cceeeCCCCCCHHHHHh
Confidence            999998887665    453               56778999999999984

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.83  E-value=1.5e-22  Score=216.44  Aligned_cols=176  Identities=15%  Similarity=0.099  Sum_probs=128.3

Q ss_pred             cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911           13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI   92 (724)
Q Consensus        13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL   92 (724)
                      ...+++++..|.+|+||||+||..|++++|++||+ .|++++...           .+.+|+||||+||.+|+.+||++|
T Consensus       113 ~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~-~g~~~~~~~-----------~~~~g~t~L~~Aa~~g~~~iv~~L  180 (346)
T d2ajaa1         113 LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAM-----------IQAENYHAFRLAAENGHLHVLNRL  180 (346)
T ss_dssp             --CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHH-----------HSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccc-----------cccCCCChhHHHHHHhhHHHHHHH
Confidence            34578899999999999999999999999999999 788887652           124689999999999999999999


Q ss_pred             HhcCCCCc---ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCC-------CC------------------
Q 004911           93 LLHSSADV---NVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDA-------NG------------------  144 (724)
Q Consensus        93 Le~~GADV---N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~-------~G------------------  144 (724)
                      |+. |++.   +.. +.+|.||||+|+..|+   .+||++||++|++++..+.       .+                  
T Consensus       181 l~~-~~~~~~~~~~-~~~~~t~l~~A~~~g~---~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (346)
T d2ajaa1         181 CEL-APTEATAMIQ-AENYYAFRWAAVGRGH---HNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA  255 (346)
T ss_dssp             HHS-CGGGHHHHHH-HHHHHHHHHHHSTTCC---HHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTT
T ss_pred             HHc-CCcccccccc-cCCCcchhhHHhhcCH---HHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHH
Confidence            998 8765   333 4567888899999999   9999999999876543211       11                  


Q ss_pred             ------------------------CcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChh
Q 004911          145 ------------------------HHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPL  200 (724)
Q Consensus       145 ------------------------~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPL  200 (724)
                                              .++|+.|+..++.++++.|++    .+..          ......+..+.+|+|||
T Consensus       256 l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~----~~~~----------~~~~~~~~~~~~g~T~L  321 (346)
T d2ajaa1         256 FKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS----IPGI----------KALAPTATIPGDANELL  321 (346)
T ss_dssp             TTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHT----STTT----------GGGSSCCSSTTCCCHHH
T ss_pred             HHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHh----CcCh----------hhhcccccCCCCCCcHH
Confidence                                    134444444444444443332    2210          01112344556799999


Q ss_pred             chhHhcCCCchhhhhcCCC
Q 004911          201 LTASASGSPPSPSRLVSSP  219 (724)
Q Consensus       201 h~Aa~~G~~eiVe~Lad~~  219 (724)
                      |+|++.|+.++|+.|++..
T Consensus       322 hlA~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         322 RLALRLGNQGACALLLSIP  340 (346)
T ss_dssp             HHHHHHTCTTHHHHHTTSH
T ss_pred             HHHHHcCcHHHHHHHhCCC
Confidence            9999999999999999864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.3e-20  Score=175.40  Aligned_cols=176  Identities=15%  Similarity=0.090  Sum_probs=141.8

Q ss_pred             ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccc------cc------------------cccccCCccc
Q 004911           14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVG------LW------------------YGRVNGSKQM   69 (724)
Q Consensus        14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~g------l~------------------~a~~~g~~~~   69 (724)
                      +.+++++..|.+|.||||+||..|+.++|+.||+ .|++++...      +.                  ..........
T Consensus        28 ~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (228)
T d1k1aa_          28 QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR  106 (228)
T ss_dssp             HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCC
T ss_pred             HCCCCCCccCCCCCccceehhccccccccccccc-ccccccccccccccccccccccccccchhhhhhcccccccccccc
Confidence            4577899999999999999999999999999999 787776643      00                  0111122233


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911           70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID  149 (724)
Q Consensus        70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLh  149 (724)
                      .....++||.+.........+.|+.. ..+........|.++||.|+..+.   .++++.++++|.+++.+|..|.||||
T Consensus       107 ~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~~~~~~~~~~~~d~~g~t~L~  182 (228)
T d1k1aa_         107 NYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNS---LSMVQLLLQHGANVNAQMYSGSSALH  182 (228)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred             ccccccccccccccccchhhhhhhcc-ccccccccccchhhHHHHHHHhhh---hhhhhhhhhhccccccccccCcchHH
Confidence            45667788888888888888888776 666555547789999999999999   99999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhh
Q 004911          150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPS  213 (724)
Q Consensus       150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe  213 (724)
                      +|+..|+.++++.|++    .|+               +++.+|.+|.||||+|+..|+.++|+
T Consensus       183 ~A~~~g~~~~v~~Ll~----~Ga---------------d~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         183 SASGRGLLPLVRTLVR----SGA---------------DSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTCHHHHHHHHH----TTC---------------CTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHH----CCC---------------CCCCCCCCCCCHHHHHHhCCCccccC
Confidence            9999999988877665    443               46677899999999999999887764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=8.1e-21  Score=198.19  Aligned_cols=159  Identities=12%  Similarity=0.081  Sum_probs=109.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCC----CHHHHHHHHHHCCCCCCCCCCCCC
Q 004911           70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSA----NVVDVVRLLLSAGADPDCVDANGH  145 (724)
Q Consensus        70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~----~~~eiVklLLe~GAd~n~~D~~G~  145 (724)
                      |.+|+||||+||..|++++|++||++ |+|++.+ |..|+||||.||..++.    ...+++++|.   .+++.+|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad~~~~-d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcC-CcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccC
Confidence            67888999999999999999999988 8999888 88899999998876641    1124455543   34666788888


Q ss_pred             cHHHHHhcCC----CHHHH----HHHHHHHHcCCCCchhhhccc----------------------ccccccccCCCCCC
Q 004911          146 HPIDVIVLPP----KLDSM----RAILEEVFGSKNSSVVVASGA----------------------EHNLTVSIGSSNSD  195 (724)
Q Consensus       146 TPLhlAa~~G----~~eiv----k~LLe~Ll~~ga~~~~~aa~~----------------------~~~l~~~in~~d~~  195 (724)
                      ||||+++..+    ...++    ..++..+...+..........                      ...+...+|.+|.+
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~  258 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN  258 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTT
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCC
Confidence            9998877533    23332    234444444332111000000                      00011237889999


Q ss_pred             CCChhchhHhcCCCchhhh----hcCCCccccCCCCcccccc
Q 004911          196 YSSPLLTASASGSPPSPSR----LVSSPMALKFNDVSFGTGA  233 (724)
Q Consensus       196 G~TPLh~Aa~~G~~eiVe~----Lad~~a~~~~g~TpLh~Aa  233 (724)
                      |+||||+|++.|+.++|++    +++++++++.|.|||++|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            9999999999999999555    5567788999999999986

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-20  Score=173.50  Aligned_cols=121  Identities=19%  Similarity=0.313  Sum_probs=105.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcC
Q 004911           75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLP  154 (724)
Q Consensus        75 TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~  154 (724)
                      ++||.||..|++++|++||++ |+|+|.+ |.+|+||||+|+..|+   .+++++|+++|++++.+|.+|+||||+|+..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~-d~~g~t~Lh~A~~~~~---~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLP-NDEGITALHNAVCAGH---TEIVKFLVQFGVNVNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCcccc-cccccccccccccccc---ccccccccccccccccccccCcccccccchh
Confidence            689999999999999999999 9999999 9999999999999999   9999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCC-CCCCChhc--hhHhcCCCchhhhhcCCC
Q 004911          155 PKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSN-SDYSSPLL--TASASGSPPSPSRLVSSP  219 (724)
Q Consensus       155 G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d-~~G~TPLh--~Aa~~G~~eiVe~Lad~~  219 (724)
                      |+.++++.|++    .|+               +++..+ ..|.|+++  .|+..|+.+++++|++..
T Consensus        78 g~~~~v~~Ll~----~ga---------------~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          78 NNVQVCKFLVE----SGA---------------AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             TCHHHHHHHHH----TTC---------------CTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             hHHHHHHHHHH----cCC---------------CcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99998887766    443               233333 35777754  557889999999987643

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=4.6e-19  Score=164.52  Aligned_cols=129  Identities=25%  Similarity=0.249  Sum_probs=115.4

Q ss_pred             cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911           15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL   94 (724)
Q Consensus        15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe   94 (724)
                      .+++++ .|..|+||||+|+..++.++++.++.. ....+..             +..+.++++.++...+.+++++|+.
T Consensus        24 ~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~~   88 (153)
T d1awcb_          24 NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDAR-------------TKVDRTPLHMAASEGHANIVEVLLK   88 (153)
T ss_dssp             HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cCCCcc-cccCCCccccccccccccccccccccc-ccccccc-------------ccccccccccccccccceeeecccc
Confidence            455555 588999999999999999999999984 3333332             4678899999999999999999999


Q ss_pred             cCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHH
Q 004911           95 HSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAI  163 (724)
Q Consensus        95 ~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~L  163 (724)
                      . |++++.+ +.+|+||||+|+..|+   .++|++|+++|+|++.+|.+|.||||+|+..|+.++++.|
T Consensus        89 ~-~~~~~~~-~~~g~T~L~~A~~~g~---~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          89 H-GADVNAK-DMLKMTALHWATEHNH---QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             T-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             c-CCccccc-cccCchHHHhhhhcch---hheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9 9999999 9999999999999999   9999999999999999999999999999999999988754

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.3e-20  Score=194.74  Aligned_cols=220  Identities=13%  Similarity=0.074  Sum_probs=120.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCC
Q 004911           29 SMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDR  108 (724)
Q Consensus        29 pLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G  108 (724)
                      .|...+.....+....+.. .+...+...            ........+.+......++...+... ++|+|...|.+|
T Consensus        42 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dvn~~~D~~G  107 (301)
T d1sw6a_          42 FLQRLLFPEIQEMPTSLNN-DSSNRNSEG------------GSSNQQQQHVSFDSLLQEVNDAFPNT-QLNLNIPVDEHG  107 (301)
T ss_dssp             HHHHHHC--------------------------------------------CHHHHHHHHHHHCTTS-CCCSCSCCSTTC
T ss_pred             HHHHHhcccchhhhhhhcc-ccccccccc------------ccccchhHHHHHHHHHHHHHhcCCcc-CCCcCcCcCCCC
Confidence            3334444455555665555 444444321            12223333333333334455555455 889997558999


Q ss_pred             CcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCH---HHHHHHHHHHHc-------CCCCchhhh
Q 004911          109 TTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKL---DSMRAILEEVFG-------SKNSSVVVA  178 (724)
Q Consensus       109 ~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~---eivk~LLe~Ll~-------~ga~~~~~a  178 (724)
                      +||||+||..|+   .++|++||++|||++.+|..|+||||+|+..++.   ..+..+++.+..       .|.++.+.+
T Consensus       108 ~T~LH~Aa~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~  184 (301)
T d1sw6a_         108 NTPLHWLTSIAN---LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI  184 (301)
T ss_dssp             CCHHHHHHHTTC---HHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHH
T ss_pred             CCHHHHHHHcCC---HHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHH
Confidence            999999999999   9999999999999999999999999999987652   233455555442       222332211


Q ss_pred             ccccc---------------------ccccccCCCCCCCCChhchhHhcCCCchhhh-----hc--CCCccccCCCCccc
Q 004911          179 SGAEH---------------------NLTVSIGSSNSDYSSPLLTASASGSPPSPSR-----LV--SSPMALKFNDVSFG  230 (724)
Q Consensus       179 a~~~~---------------------~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~-----La--d~~a~~~~g~TpLh  230 (724)
                      .....                     ............+.++++.+........+..     ++  .++.+|..|+||||
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh  264 (301)
T d1sw6a_         185 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN  264 (301)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHH
T ss_pred             HHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHH
Confidence            10000                     0001112223344455555544443333211     11  26788999999999


Q ss_pred             cccccCCCCCCCCCCccccccccccccccccceee
Q 004911          231 TGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR  265 (724)
Q Consensus       231 ~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~  265 (724)
                      +|+..|+.++++.|++.|++++..|..|.++++.+
T Consensus       265 ~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         265 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence            99999999999999999999999999999998765

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.2e-17  Score=158.31  Aligned_cols=125  Identities=18%  Similarity=0.181  Sum_probs=106.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCcccc-----cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911           75 TPLMVAATYGSVDVLKLILLHSSADVNVS-----CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID  149 (724)
Q Consensus        75 TPLH~AA~~G~~evVklLLe~~GADVN~~-----~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLh  149 (724)
                      ..|+.|++.+++..+..++.. |+|++..     .+..|+||||+|+..+.....++|++||++|+|+|.+|.+|+||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccc
Confidence            356688999999999999998 8887754     2567999999999754333399999999999999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911          150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP  219 (724)
Q Consensus       150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~  219 (724)
                      +|+..|+.++++.|++    .|+               +++..|.+|.||||+|+..|+.++++.|+...
T Consensus        87 ~A~~~~~~~~v~~Ll~----~ga---------------d~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLR----GKA---------------SIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHHHTTCHHHHHHHHH----TTC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccccccccc----cCc---------------cccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            9999999998887766    343               56678999999999999999999999888754

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=1.4e-08  Score=73.16  Aligned_cols=32  Identities=38%  Similarity=0.728  Sum_probs=29.2

Q ss_pred             ccccccccCCCC---CCCCCcc-cccccCCCccccc
Q 004911          329 PAQYRTRLCKDG---TSCDRRV-CFFAHTAEELRPL  360 (724)
Q Consensus       329 P~~yrT~~C~~~---~~C~~~~-C~faH~~~e~r~~  360 (724)
                      +..|||++|+.|   +.|++|. |.|||+.+|||.+
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   39 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   39 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCC
Confidence            578999999977   7899998 9999999999975

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=7.1e-09  Score=72.89  Aligned_cols=31  Identities=42%  Similarity=0.790  Sum_probs=28.2

Q ss_pred             cccccccCCCC---CCCCCcc-cccccCCCccccc
Q 004911          330 AQYRTRLCKDG---TSCDRRV-CFFAHTAEELRPL  360 (724)
Q Consensus       330 ~~yrT~~C~~~---~~C~~~~-C~faH~~~e~r~~  360 (724)
                      ..|||++|+.|   +.|++|. |.|||+.+|||++
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   36 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSL   36 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccCC
Confidence            47999999977   7899998 9999999999975

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=8.6e-08  Score=66.28  Aligned_cols=28  Identities=43%  Similarity=0.911  Sum_probs=25.6

Q ss_pred             CccccccccCCCC---CCCCCcc-cccccCCCc
Q 004911          328 HPAQYRTRLCKDG---TSCDRRV-CFFAHTAEE  356 (724)
Q Consensus       328 hP~~yrT~~C~~~---~~C~~~~-C~faH~~~e  356 (724)
                      || .|||++|+.|   +.|++|. |.|||+++|
T Consensus         3 hp-kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           3 HP-KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             CT-TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CC-CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            67 6999999988   8999998 999999987

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00016  Score=51.43  Aligned_cols=32  Identities=34%  Similarity=0.753  Sum_probs=28.4

Q ss_pred             CccccCCCCCCC-CCcCCCCCCcccCCCccccc
Q 004911          295 FHYSCVPCPDFR-KGACRRGDMCEYAHGVFECW  326 (724)
Q Consensus       295 y~Ys~~~CP~~r-kG~C~~Gd~C~~aH~~~E~~  326 (724)
                      -.|.+.+|+.|. .|.|+.|+.|.|||+..|+.
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            468999999885 58999999999999998875

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=8.2e-05  Score=51.73  Aligned_cols=31  Identities=35%  Similarity=0.887  Sum_probs=27.7

Q ss_pred             ccccCCCCCCC-CCcCCCCCCcccCCCccccc
Q 004911          296 HYSCVPCPDFR-KGACRRGDMCEYAHGVFECW  326 (724)
Q Consensus       296 ~Ys~~~CP~~r-kG~C~~Gd~C~~aH~~~E~~  326 (724)
                      +|.+.+|..|. .|.|+.|+.|.|||+..|+.
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHcc
Confidence            68999999875 58999999999999998875

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.00036  Score=47.69  Aligned_cols=29  Identities=31%  Similarity=0.704  Sum_probs=25.9

Q ss_pred             ccccCCCCCCCC-CcCCCCCCcccCCCccc
Q 004911          296 HYSCVPCPDFRK-GACRRGDMCEYAHGVFE  324 (724)
Q Consensus       296 ~Ys~~~CP~~rk-G~C~~Gd~C~~aH~~~E  324 (724)
                      +|.+.+|..|.. |.|+.|+.|.|||+..|
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            589999999864 89999999999999765

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.56  E-value=0.16  Score=32.14  Aligned_cols=23  Identities=35%  Similarity=0.788  Sum_probs=19.7

Q ss_pred             cCCCCCCCCCcCCCCCCcccCCC
Q 004911          299 CVPCPDFRKGACRRGDMCEYAHG  321 (724)
Q Consensus       299 ~~~CP~~rkG~C~~Gd~C~~aH~  321 (724)
                      -.+|..+..|.|.+|++|.|-|.
T Consensus         6 kelCKfYvqGyCtrgenC~ymH~   28 (29)
T d2cqea2           6 RELCKFYITGFCARAENCPYMHG   28 (29)
T ss_dssp             CSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             hhhhhhheeeeecCCcCcccccC
Confidence            35788888999999999999886

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.07  E-value=0.18  Score=31.97  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=19.2

Q ss_pred             cccccCCCC--CCCCCcc-cccccCC
Q 004911          332 YRTRLCKDG--TSCDRRV-CFFAHTA  354 (724)
Q Consensus       332 yrT~~C~~~--~~C~~~~-C~faH~~  354 (724)
                      -|..+|+.+  +.|.++. |.|-|+.
T Consensus         4 kkkelCKfYvqGyCtrgenC~ymH~e   29 (29)
T d2cqea2           4 KKRELCKFYITGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCCSBCTTTTTTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhhheeeeecCCcCcccccCC
Confidence            356789987  8899998 9999974